AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0619870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619870 MtrunA17_Chr8g0385761 96.942 327 7 1 1 327 1 324 0.0 653
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619870 AT4G25080.6 73.469 294 67 4 39 327 39 326 4.78e-154 435
Msa0619870 AT4G25080.2 73.469 294 67 4 39 327 25 312 7.30e-154 434
Msa0619870 AT4G25080.3 73.469 294 67 4 39 327 25 312 7.30e-154 434
Msa0619870 AT4G25080.5 73.469 294 67 4 39 327 25 312 7.30e-154 434
Msa0619870 AT4G25080.1 73.469 294 67 4 39 327 25 312 7.30e-154 434
Msa0619870 AT4G25080.4 77.689 251 50 2 77 327 1 245 5.73e-144 406

Find 129 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGCATGTAGTTTCAAATT+TGG 0.101475 4_2:-71209035 None:intergenic
GATTGCTCACCTTGCTTCTT+TGG 0.174968 4_2:+71208593 Msa0619870:CDS
TGTTCGCGTCGTCGTCTTTC+CGG 0.201498 4_2:-71207075 None:intergenic
GGATGATGAGAACGCCATTT+TGG 0.276616 4_2:-71206824 None:intergenic
GGTGAGTGATTTAGAGAGTT+TGG 0.296867 4_2:+71208500 Msa0619870:CDS
TTTGTTGTGGGTGGCGGGAG+AGG 0.307225 4_2:-71206911 None:intergenic
GAACATGCAATGATAATAAA+AGG 0.309474 4_2:-71209111 None:intergenic
ATAGAGTTCAACGGGATATT+AGG 0.312977 4_2:+71207202 Msa0619870:CDS
CTGCTTGTGTCCAGTGAAAA+TGG 0.315342 4_2:+71208450 Msa0619870:CDS
TGGCATGTAGTTTCAAATTT+GGG 0.320809 4_2:-71209034 None:intergenic
TGTGATGCTGGTTGTGGTAC+TGG 0.330850 4_2:+71207300 Msa0619870:CDS
GGCGATTGTTGTGCCGTCTA+TGG 0.335739 4_2:-71206998 None:intergenic
AAGTAGGACCCACGAGAATC+AGG 0.337401 4_2:+71206706 Msa0619870:five_prime_UTR
TCACTCAAATCAAACCAAAA+TGG 0.348627 4_2:+71206810 Msa0619870:exon
GAATGCTATCTTATCTTTCC+TGG 0.348744 4_2:+71206745 Msa0619870:five_prime_UTR
GCATCATAATAAAATGTCTT+AGG 0.351793 4_2:-71208645 None:intergenic
CAACGATGGAAGAAGATTTA+CGG 0.365499 4_2:+71207162 Msa0619870:CDS
GAAAGATGAAGGGCCACTTC+AGG 0.373746 4_2:+71207266 Msa0619870:CDS
GTTCGCGTCGTCGTCTTTCC+GGG 0.385307 4_2:-71207074 None:intergenic
TTGTGGGTGGCGGGAGAGGA+GGG 0.387295 4_2:-71206907 None:intergenic
GGAAAGACGACGACGCGAAC+AGG 0.395017 4_2:+71207077 Msa0619870:CDS
GGAATATAATATACATATCC+AGG 0.395360 4_2:-71208950 None:intergenic
ATACATATCCAGGGGATCAT+AGG 0.401558 4_2:-71208940 None:intergenic
GCAACAGCCGCCGACGTTAC+CGG 0.402705 4_2:+71206973 Msa0619870:CDS
AATATAATCGATGCATCAAC+TGG 0.405124 4_2:-71209054 None:intergenic
GTTGTGGGTGGCGGGAGAGG+AGG 0.411029 4_2:-71206908 None:intergenic
GGTGTTACTATTTGTGATGC+TGG 0.416395 4_2:+71207288 Msa0619870:CDS
AATGGCTTACAATATACATT+AGG 0.416961 4_2:-71208890 None:intergenic
AAAGGGCGTTGCGCAAGGTT+GGG 0.417723 4_2:+71208745 Msa0619870:CDS
GGTTGCTGAAGCTGAGAAAC+AGG 0.419084 4_2:+71207389 Msa0619870:CDS
TAAGAGTTTGTTGTGGGTGG+CGG 0.431253 4_2:-71206917 None:intergenic
AGGGTTGGAGAGTTGTTCCC+TGG 0.435316 4_2:+71208675 Msa0619870:CDS
CTGAAAGAAGTTTGAAAAGT+AGG 0.444048 4_2:+71206690 None:intergenic
ACAAACAACGGCACCTTCCT+TGG 0.445026 4_2:-71207343 None:intergenic
GTAAGCGGTGGCTTCGTCGC+TGG 0.445724 4_2:+71207024 Msa0619870:CDS
TTACAGATGTTGAAAGATGA+AGG 0.450243 4_2:+71207255 Msa0619870:CDS
AAATCACTCACCACAAACTT+TGG 0.452354 4_2:-71208489 None:intergenic
AAGTGATGATATTGTTATCC+AGG 0.465411 4_2:-71206763 None:intergenic
CTGGGCCTTCCAAGGCAACC+AGG 0.466683 4_2:+71208694 Msa0619870:CDS
TGATGTTAATAGAGTTCAAC+GGG 0.468337 4_2:+71207194 Msa0619870:CDS
ACTATTTGTGATGCTGGTTG+TGG 0.469095 4_2:+71207294 Msa0619870:CDS
GAAAGGGCGTTGCGCAAGGT+TGG 0.471715 4_2:+71208744 Msa0619870:CDS
CTGGTTGCCTTGGAAGGCCC+AGG 0.472074 4_2:-71208693 None:intergenic
AGTGATTTAGAGAGTTTGGA+TGG 0.476634 4_2:+71208504 Msa0619870:CDS
GGGAGTATTTCAACAACAAC+GGG 0.479355 4_2:+71207136 Msa0619870:CDS
AAAGATGAAGGGCCACTTCA+GGG 0.481133 4_2:+71207267 Msa0619870:CDS
GTCGTCTTTCCGGGTCTGAA+AGG 0.481970 4_2:-71207065 None:intergenic
AAGAGTTTGTTGTGGGTGGC+GGG 0.483942 4_2:-71206916 None:intergenic
GGTTGTTAAGAGTTTGTTGT+GGG 0.485748 4_2:-71206923 None:intergenic
GTTCAACGGGATATTAGGTT+GGG 0.491602 4_2:+71207207 Msa0619870:CDS
AGTTCAACGGGATATTAGGT+TGG 0.497728 4_2:+71207206 Msa0619870:CDS
TTTATTATGATGCACTAAAG+AGG 0.498288 4_2:+71208655 Msa0619870:CDS
TTACTTTGCCAAGCTTATTG+AGG 0.499395 4_2:+71208806 Msa0619870:CDS
TTCTGAAGCAGATGTTGAAA+GGG 0.501417 4_2:+71208728 Msa0619870:CDS
TCGTCTTTCCGGGTCTGAAA+GGG 0.501629 4_2:-71207064 None:intergenic
ACCACAAACTTTGGCATCGC+AGG 0.503004 4_2:-71208480 None:intergenic
AAGATATGCCCTGGTTGCCT+TGG 0.503839 4_2:-71208703 None:intergenic
TGGTTCTCTTTCGATTCCGT+TGG 0.504285 4_2:+71207320 Msa0619870:CDS
AAACTTACCTCTGAATCCTC+TGG 0.506783 4_2:-71208848 None:intergenic
CAGCATCATTTACGCTAAGA+AGG 0.507758 4_2:-71208971 None:intergenic
ACGACGACGCGAACAGGCGG+AGG 0.509203 4_2:+71207083 Msa0619870:CDS
TCGATTCCGTTGGCCAAGGA+AGG 0.510765 4_2:+71207330 Msa0619870:CDS
ACCTGCGATGCCAAAGTTTG+TGG 0.512251 4_2:+71208479 Msa0619870:CDS
GGTAACGTCGGCGGCTGTTG+CGG 0.517328 4_2:-71206971 None:intergenic
ATTCTGAAGCAGATGTTGAA+AGG 0.518414 4_2:+71208727 Msa0619870:CDS
TATGCCCTGGTTGCCTTGGA+AGG 0.522393 4_2:-71208699 None:intergenic
ACTTCTCTCCCTTTCAGACC+CGG 0.523310 4_2:+71207056 Msa0619870:CDS
TAAAGCGTTCTCAACAGTCT+TGG 0.523882 4_2:-71207235 None:intergenic
TATGATGCACTAAAGAGGGT+TGG 0.524966 4_2:+71208660 Msa0619870:CDS
GTTGTTCCCTGGGCCTTCCA+AGG 0.535217 4_2:+71208686 Msa0619870:CDS
GGGCGTTGCGCAAGGTTGGG+TGG 0.537359 4_2:+71208748 Msa0619870:CDS
GTCTATGGCGCCGGTAACGT+CGG 0.538591 4_2:-71206983 None:intergenic
GCGGCTGTTGCGGTTGAGAG+TGG 0.540172 4_2:-71206961 None:intergenic
TTATTATGATGCACTAAAGA+GGG 0.543982 4_2:+71208656 Msa0619870:CDS
GCTGTTGCGGTTGAGAGTGG+AGG 0.545699 4_2:-71206958 None:intergenic
CGCGAACAGGCGGAGGAAGT+AGG 0.545859 4_2:+71207090 Msa0619870:CDS
TCCCATCTGCTTTACTCTGA+GGG 0.551667 4_2:-71208569 None:intergenic
TTTCTCAGCTTCAGCAACCA+TGG 0.556058 4_2:-71207385 None:intergenic
GGGTTGGAGAGTTGTTCCCT+GGG 0.560240 4_2:+71208676 Msa0619870:CDS
AGGAACAGCCTCAATAAGCT+TGG 0.560754 4_2:-71208814 None:intergenic
TGTTGAAAGGGCGTTGCGCA+AGG 0.560806 4_2:+71208740 Msa0619870:CDS
TCTTTCGATTCCGTTGGCCA+AGG 0.564426 4_2:+71207326 Msa0619870:CDS
GGCAGAAAATTCATCACCCA+AGG 0.565337 4_2:-71209090 None:intergenic
AGTAGGACCCACGAGAATCA+GGG 0.566735 4_2:+71206707 Msa0619870:five_prime_UTR
AAGACGACGACGCGAACAGG+CGG 0.569936 4_2:+71207080 Msa0619870:CDS
TGGTTGCCTTGGAAGGCCCA+GGG 0.570031 4_2:-71208692 None:intergenic
TGTTGTGCCGTCTATGGCGC+CGG 0.571715 4_2:-71206992 None:intergenic
TGGGCCTTCCAAGGCAACCA+GGG 0.571898 4_2:+71208695 Msa0619870:CDS
TGGTTGTTAAGAGTTTGTTG+TGG 0.572241 4_2:-71206924 None:intergenic
GACGTTACCGGCGCCATAGA+CGG 0.574011 4_2:+71206985 Msa0619870:CDS
ACAACAACGGGTTTCAACGA+TGG 0.574622 4_2:+71207148 Msa0619870:CDS
TGTTAAGAGTTTGTTGTGGG+TGG 0.574727 4_2:-71206920 None:intergenic
GAGTGGAGGGATGGCGAATG+TGG 0.575620 4_2:-71206944 None:intergenic
TATGTTATCCTATGATCCCC+TGG 0.581885 4_2:+71208932 Msa0619870:three_prime_UTR
AGGGAGAGAATGTAGCGAAA+CGG 0.590209 4_2:-71206888 None:intergenic
GACGAAGCCACCGCTTACGA+CGG 0.590883 4_2:-71207019 None:intergenic
TACCCTCAGAGTAAAGCAGA+TGG 0.593009 4_2:+71208567 Msa0619870:CDS
ATCCCATCTGCTTTACTCTG+AGG 0.595461 4_2:-71208570 None:intergenic
AGTGAGTCCAGAGGATTCAG+AGG 0.601420 4_2:+71208841 Msa0619870:exon
TACAGATGTTGAAAGATGAA+GGG 0.602628 4_2:+71207256 Msa0619870:CDS
CAAATAGTAACACCCTGAAG+TGG 0.608139 4_2:-71207279 None:intergenic
CTGTTGCGGTTGAGAGTGGA+GGG 0.608229 4_2:-71206957 None:intergenic
GAATATAATATACATATCCA+GGG 0.609774 4_2:-71208949 None:intergenic
ACGGCACCTTCCTTGGCCAA+CGG 0.611174 4_2:-71207336 None:intergenic
GGGTGGACGATAAAGAAGAA+AGG 0.614466 4_2:+71208765 Msa0619870:CDS
TGCATGTTCTCAAAATGTCA+AGG 0.621246 4_2:+71209125 Msa0619870:three_prime_UTR
TATGGCGCCGGTAACGTCGG+CGG 0.621518 4_2:-71206980 None:intergenic
ACGAGAATCAGGGAAAAGCA+TGG 0.621841 4_2:+71206717 Msa0619870:five_prime_UTR
TAGTGATATATCAGCTGCCA+TGG 0.622099 4_2:+71207368 Msa0619870:CDS
ACAACAATCGCCGTCGTAAG+CGG 0.623303 4_2:+71207009 Msa0619870:CDS
AGGGAGTATTTCAACAACAA+CGG 0.626963 4_2:+71207135 Msa0619870:CDS
ACCCTCAGAGTAAAGCAGAT+GGG 0.629699 4_2:+71208568 Msa0619870:CDS
GTGATGACAAAGAAGTTGTG+AGG 0.636702 4_2:+71207115 Msa0619870:CDS
TGCGGTTGAGAGTGGAGGGA+TGG 0.637524 4_2:-71206953 None:intergenic
AACAAAGAGAGAAGACCACA+TGG 0.638571 4_2:-71206845 None:intergenic
ATGATGTTAATAGAGTTCAA+CGG 0.639280 4_2:+71207193 Msa0619870:CDS
TTCAGAATGAAGATATGCCC+TGG 0.639551 4_2:-71208712 None:intergenic
TGATGACAAAGAAGTTGTGA+GGG 0.644653 4_2:+71207116 Msa0619870:CDS
ATCCTCTGGACTCACTACAT+AGG 0.659752 4_2:-71208834 None:intergenic
ACAATCGCCGTCGTAAGCGG+TGG 0.659960 4_2:+71207012 Msa0619870:CDS
GTCTGAAAGGGAGAGAAGTG+CGG 0.675558 4_2:-71207052 None:intergenic
GGATGGATTGTACGATACAG+TGG 0.678861 4_2:+71208521 Msa0619870:CDS
GAACAGGCGGAGGAAGTAGG+CGG 0.681114 4_2:+71207093 Msa0619870:CDS
TTCCTATGTAGTGAGTCCAG+AGG 0.689702 4_2:+71208832 Msa0619870:exon
TATATCACTAGCACAAACAA+CGG 0.690655 4_2:-71207355 None:intergenic
AATATAATATACATATCCAG+GGG 0.707394 4_2:-71208948 None:intergenic
TGGCGTTCTCATCATCCATG+TGG 0.707884 4_2:+71206830 Msa0619870:CDS
AAAGGGAGAGAAGTGCGGTG+AGG 0.719705 4_2:-71207047 None:intergenic
GGTAATGAATCATAACATCG+AGG 0.752533 4_2:-71208548 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTGTAATATGTAA+CGG + chr4_2:71209004-71209023 Msa0619870:three_prime_UTR 10.0%
!! TCAAAAAACATAAATATCAA+AGG - chr4_2:71207429-71207448 None:intergenic 15.0%
!! TTATATAAATAGGAAGATTA+TGG + chr4_2:71207873-71207892 Msa0619870:intron 15.0%
!!! ATTTTATCCTATCTAAGTTT+TGG - chr4_2:71207538-71207557 None:intergenic 20.0%
!! AGAGAAGGATTTATATAAAT+AGG + chr4_2:71207863-71207882 Msa0619870:intron 20.0%
!! GACAATAATAATGTAATCAT+TGG + chr4_2:71208248-71208267 Msa0619870:intron 20.0%
!! AATATAATATACATATCCAG+GGG - chr4_2:71208951-71208970 None:intergenic 20.0%
!! GAATATAATATACATATCCA+GGG - chr4_2:71208952-71208971 None:intergenic 20.0%
! ATGATGTTAATAGAGTTCAA+CGG + chr4_2:71207193-71207212 Msa0619870:CDS 25.0%
! ACGATATTCAATTTAGTACA+CGG - chr4_2:71207604-71207623 None:intergenic 25.0%
!! CGTGAATATCATTTTGTAAA+CGG - chr4_2:71207732-71207751 None:intergenic 25.0%
! CAATTGATGTTTGTAAACAT+CGG - chr4_2:71207759-71207778 None:intergenic 25.0%
!!! TATGTTGTTTTTGTTAGAGA+AGG + chr4_2:71207848-71207867 Msa0619870:intron 25.0%
!!! TTGATAAAAAGTGTTTTGGT+AGG - chr4_2:71208096-71208115 None:intergenic 25.0%
!!! TGCTTTGATAAAAAGTGTTT+TGG - chr4_2:71208100-71208119 None:intergenic 25.0%
! TTATTGTCAGACATTGTAAA+AGG - chr4_2:71208236-71208255 None:intergenic 25.0%
!! TTTAGACAATTTGAAATACC+CGG - chr4_2:71208331-71208350 None:intergenic 25.0%
!!! GTTTTGAATGAATTTGACTT+TGG - chr4_2:71208355-71208374 None:intergenic 25.0%
! GCATCATAATAAAATGTCTT+AGG - chr4_2:71208648-71208667 None:intergenic 25.0%
! TTTATTATGATGCACTAAAG+AGG + chr4_2:71208655-71208674 Msa0619870:CDS 25.0%
! TTATTATGATGCACTAAAGA+GGG + chr4_2:71208656-71208675 Msa0619870:CDS 25.0%
! AATGGCTTACAATATACATT+AGG - chr4_2:71208893-71208912 None:intergenic 25.0%
! GGAATATAATATACATATCC+AGG - chr4_2:71208953-71208972 None:intergenic 25.0%
!!! TATTTATTTTGCTACTTCCT+TGG + chr4_2:71209073-71209092 Msa0619870:three_prime_UTR 25.0%
!!! ATTTATTTTGCTACTTCCTT+GGG + chr4_2:71209074-71209093 Msa0619870:three_prime_UTR 25.0%
! GAACATGCAATGATAATAAA+AGG - chr4_2:71209114-71209133 None:intergenic 25.0%
AAGTGATGATATTGTTATCC+AGG - chr4_2:71206766-71206785 None:intergenic 30.0%
TCACTCAAATCAAACCAAAA+TGG + chr4_2:71206810-71206829 Msa0619870:exon 30.0%
TGATGTTAATAGAGTTCAAC+GGG + chr4_2:71207194-71207213 Msa0619870:CDS 30.0%
TTACAGATGTTGAAAGATGA+AGG + chr4_2:71207255-71207274 Msa0619870:CDS 30.0%
TACAGATGTTGAAAGATGAA+GGG + chr4_2:71207256-71207275 Msa0619870:CDS 30.0%
TATATCACTAGCACAAACAA+CGG - chr4_2:71207358-71207377 None:intergenic 30.0%
! ATTGACTCCAAAACTTAGAT+AGG + chr4_2:71207528-71207547 Msa0619870:intron 30.0%
TGAATATCGTAGAACAATAG+CGG + chr4_2:71207614-71207633 Msa0619870:intron 30.0%
ATCATGTTAGAGGTTAGAAT+AGG + chr4_2:71207809-71207828 Msa0619870:intron 30.0%
TCATGTTAGAGGTTAGAATA+GGG + chr4_2:71207810-71207829 Msa0619870:intron 30.0%
!!! CTTTTTTTTTAGGGGAATAG+AGG - chr4_2:71207950-71207969 None:intergenic 30.0%
!!! AGTCGCAACTTTTTTTTTAG+GGG - chr4_2:71207958-71207977 None:intergenic 30.0%
!!! GAGTCGCAACTTTTTTTTTA+GGG - chr4_2:71207959-71207978 None:intergenic 30.0%
!!! AGAGTCGCAACTTTTTTTTT+AGG - chr4_2:71207960-71207979 None:intergenic 30.0%
TTCTGTTCCATTCAATTCTT+AGG + chr4_2:71208050-71208069 Msa0619870:intron 30.0%
GTCATGGGTCAAATTTAATA+GGG - chr4_2:71208147-71208166 None:intergenic 30.0%
TTCAAACACACAAACTAACA+CGG + chr4_2:71208395-71208414 Msa0619870:intron 30.0%
! CATACAAAAGCACACAAAAA+TGG - chr4_2:71208911-71208930 None:intergenic 30.0%
TGGCATGTAGTTTCAAATTT+GGG - chr4_2:71209037-71209056 None:intergenic 30.0%
AATATAATCGATGCATCAAC+TGG - chr4_2:71209057-71209076 None:intergenic 30.0%
GAATGCTATCTTATCTTTCC+TGG + chr4_2:71206745-71206764 Msa0619870:five_prime_UTR 35.0%
!!! CGAAACGGTTAGTTTTGTTT+GGG - chr4_2:71206876-71206895 None:intergenic 35.0%
!! GGTTGTTAAGAGTTTGTTGT+GGG - chr4_2:71206926-71206945 None:intergenic 35.0%
!! TGGTTGTTAAGAGTTTGTTG+TGG - chr4_2:71206927-71206946 None:intergenic 35.0%
TGATGACAAAGAAGTTGTGA+GGG + chr4_2:71207116-71207135 Msa0619870:CDS 35.0%
!! AGGGAGTATTTCAACAACAA+CGG + chr4_2:71207135-71207154 Msa0619870:CDS 35.0%
CAACGATGGAAGAAGATTTA+CGG + chr4_2:71207162-71207181 Msa0619870:CDS 35.0%
ATAGAGTTCAACGGGATATT+AGG + chr4_2:71207202-71207221 Msa0619870:CDS 35.0%
!!! CAACTCATTTTGAAGTGGAA+GGG + chr4_2:71207686-71207705 Msa0619870:intron 35.0%
! TGTGTTAGGAAGCACAATTA+CGG - chr4_2:71207790-71207809 None:intergenic 35.0%
TTCCTAACACATCATGTTAG+AGG + chr4_2:71207799-71207818 Msa0619870:intron 35.0%
AACCTCTAACATGATGTGTT+AGG - chr4_2:71207804-71207823 None:intergenic 35.0%
TTGTGAAAGGGAAACCTTTA+AGG + chr4_2:71207981-71208000 Msa0619870:intron 35.0%
ATGAGAGAATCTCTCCTTAA+AGG - chr4_2:71207998-71208017 None:intergenic 35.0%
TTAGGGACCTAAGAATTGAA+TGG - chr4_2:71208060-71208079 None:intergenic 35.0%
GGTCATGGGTCAAATTTAAT+AGG - chr4_2:71208148-71208167 None:intergenic 35.0%
ATTAAATTTGACCCATGACC+AGG + chr4_2:71208148-71208167 Msa0619870:intron 35.0%
TTAAATTTGACCCATGACCA+GGG + chr4_2:71208149-71208168 Msa0619870:intron 35.0%
TGTCAGACATTGTAAAAGGA+GGG - chr4_2:71208232-71208251 None:intergenic 35.0%
TTGTCAGACATTGTAAAAGG+AGG - chr4_2:71208233-71208252 None:intergenic 35.0%
! AAGTGTGTTTTTCACTTTGC+AGG + chr4_2:71208419-71208438 Msa0619870:intron 35.0%
AAATCACTCACCACAAACTT+TGG - chr4_2:71208492-71208511 None:intergenic 35.0%
AGTGATTTAGAGAGTTTGGA+TGG + chr4_2:71208504-71208523 Msa0619870:CDS 35.0%
GGTAATGAATCATAACATCG+AGG - chr4_2:71208551-71208570 None:intergenic 35.0%
!! ATTCTGAAGCAGATGTTGAA+AGG + chr4_2:71208727-71208746 Msa0619870:CDS 35.0%
!! TTCTGAAGCAGATGTTGAAA+GGG + chr4_2:71208728-71208747 Msa0619870:CDS 35.0%
TTACTTTGCCAAGCTTATTG+AGG + chr4_2:71208806-71208825 Msa0619870:CDS 35.0%
! GGTAAGTTTTGCATCATTAG+AGG + chr4_2:71208862-71208881 Msa0619870:three_prime_UTR 35.0%
CTGGCATGTAGTTTCAAATT+TGG - chr4_2:71209038-71209057 None:intergenic 35.0%
TGCATGTTCTCAAAATGTCA+AGG + chr4_2:71209125-71209144 Msa0619870:three_prime_UTR 35.0%
AACAAAGAGAGAAGACCACA+TGG - chr4_2:71206848-71206867 None:intergenic 40.0%
!!! CGGTTAGTTTTGTTTGGGTT+TGG - chr4_2:71206871-71206890 None:intergenic 40.0%
!!! GCGAAACGGTTAGTTTTGTT+TGG - chr4_2:71206877-71206896 None:intergenic 40.0%
!! TGTTAAGAGTTTGTTGTGGG+TGG - chr4_2:71206923-71206942 None:intergenic 40.0%
GTGATGACAAAGAAGTTGTG+AGG + chr4_2:71207115-71207134 Msa0619870:CDS 40.0%
!! GGGAGTATTTCAACAACAAC+GGG + chr4_2:71207136-71207155 Msa0619870:CDS 40.0%
AGTTCAACGGGATATTAGGT+TGG + chr4_2:71207206-71207225 Msa0619870:CDS 40.0%
GTTCAACGGGATATTAGGTT+GGG + chr4_2:71207207-71207226 Msa0619870:CDS 40.0%
! TAAAGCGTTCTCAACAGTCT+TGG - chr4_2:71207238-71207257 None:intergenic 40.0%
CAAATAGTAACACCCTGAAG+TGG - chr4_2:71207282-71207301 None:intergenic 40.0%
!! GGTGTTACTATTTGTGATGC+TGG + chr4_2:71207288-71207307 Msa0619870:CDS 40.0%
! ACTATTTGTGATGCTGGTTG+TGG + chr4_2:71207294-71207313 Msa0619870:CDS 40.0%
TAGTGATATATCAGCTGCCA+TGG + chr4_2:71207368-71207387 Msa0619870:CDS 40.0%
!! GCTTGCAACTCATTTTGAAG+TGG + chr4_2:71207681-71207700 Msa0619870:intron 40.0%
!!! GCAACTCATTTTGAAGTGGA+AGG + chr4_2:71207685-71207704 Msa0619870:intron 40.0%
AGTTGCGACTCTATTGTGAA+AGG + chr4_2:71207968-71207987 Msa0619870:intron 40.0%
GTTGCGACTCTATTGTGAAA+GGG + chr4_2:71207969-71207988 Msa0619870:intron 40.0%
CCAGACAAATTTGGTCTCTA+AGG - chr4_2:71208180-71208199 None:intergenic 40.0%
CCTTAGAGACCAAATTTGTC+TGG + chr4_2:71208177-71208196 Msa0619870:intron 40.0%
GAACACACACCAGACAAATT+TGG - chr4_2:71208189-71208208 None:intergenic 40.0%
GTCAGACATTGTAAAAGGAG+GGG - chr4_2:71208231-71208250 None:intergenic 40.0%
CTTTCAGGATCAGAACTAAG+GGG - chr4_2:71208286-71208305 None:intergenic 40.0%
CCTTTCAGGATCAGAACTAA+GGG - chr4_2:71208287-71208306 None:intergenic 40.0%
GGTGAGTGATTTAGAGAGTT+TGG + chr4_2:71208500-71208519 Msa0619870:CDS 40.0%
TATGATGCACTAAAGAGGGT+TGG + chr4_2:71208660-71208679 Msa0619870:CDS 40.0%
TTCAGAATGAAGATATGCCC+TGG - chr4_2:71208715-71208734 None:intergenic 40.0%
AAACTTACCTCTGAATCCTC+TGG - chr4_2:71208851-71208870 None:intergenic 40.0%
TATGTTATCCTATGATCCCC+TGG + chr4_2:71208932-71208951 Msa0619870:three_prime_UTR 40.0%
ATACATATCCAGGGGATCAT+AGG - chr4_2:71208943-71208962 None:intergenic 40.0%
CAGCATCATTTACGCTAAGA+AGG - chr4_2:71208974-71208993 None:intergenic 40.0%
! TGCTTTTCCCTGATTCTCGT+GGG - chr4_2:71206717-71206736 None:intergenic 45.0%
! ATGCTTTTCCCTGATTCTCG+TGG - chr4_2:71206718-71206737 None:intergenic 45.0%
ACGAGAATCAGGGAAAAGCA+TGG + chr4_2:71206717-71206736 Msa0619870:five_prime_UTR 45.0%
! GGATGATGAGAACGCCATTT+TGG - chr4_2:71206827-71206846 None:intergenic 45.0%
AGGGAGAGAATGTAGCGAAA+CGG - chr4_2:71206891-71206910 None:intergenic 45.0%
!! TAAGAGTTTGTTGTGGGTGG+CGG - chr4_2:71206920-71206939 None:intergenic 45.0%
! ACAACAACGGGTTTCAACGA+TGG + chr4_2:71207148-71207167 Msa0619870:CDS 45.0%
AAAGATGAAGGGCCACTTCA+GGG + chr4_2:71207267-71207286 Msa0619870:CDS 45.0%
TGGTTCTCTTTCGATTCCGT+TGG + chr4_2:71207320-71207339 Msa0619870:CDS 45.0%
TTTCTCAGCTTCAGCAACCA+TGG - chr4_2:71207388-71207407 None:intergenic 45.0%
GGAAGATTATGGAGTCAGAG+AGG + chr4_2:71207884-71207903 Msa0619870:intron 45.0%
TAGGCACGAATGGCATGTTA+GGG - chr4_2:71208077-71208096 None:intergenic 45.0%
!!! AGTGTTTTGGTAGGCACGAA+TGG - chr4_2:71208087-71208106 None:intergenic 45.0%
TAAGGTTTCACCCTGGTCAT+GGG - chr4_2:71208162-71208181 None:intergenic 45.0%
GGTGTGTGTTCTGTCAACTA+AGG + chr4_2:71208198-71208217 Msa0619870:intron 45.0%
!! CCCTTAGTTCTGATCCTGAA+AGG + chr4_2:71208284-71208303 Msa0619870:intron 45.0%
GCCTTTCAGGATCAGAACTA+AGG - chr4_2:71208288-71208307 None:intergenic 45.0%
CTGCTTGTGTCCAGTGAAAA+TGG + chr4_2:71208450-71208469 Msa0619870:CDS 45.0%
! AGGTGACACTCCATTTTCAC+TGG - chr4_2:71208463-71208482 None:intergenic 45.0%
!! GGATGGATTGTACGATACAG+TGG + chr4_2:71208521-71208540 Msa0619870:CDS 45.0%
TACCCTCAGAGTAAAGCAGA+TGG + chr4_2:71208567-71208586 Msa0619870:CDS 45.0%
ACCCTCAGAGTAAAGCAGAT+GGG + chr4_2:71208568-71208587 Msa0619870:CDS 45.0%
TCCCATCTGCTTTACTCTGA+GGG - chr4_2:71208572-71208591 None:intergenic 45.0%
ATCCCATCTGCTTTACTCTG+AGG - chr4_2:71208573-71208592 None:intergenic 45.0%
GATTGCTCACCTTGCTTCTT+TGG + chr4_2:71208593-71208612 Msa0619870:CDS 45.0%
! GCTTTTCTGCCAAAGAAGCA+AGG - chr4_2:71208605-71208624 None:intergenic 45.0%
GGGTGGACGATAAAGAAGAA+AGG + chr4_2:71208765-71208784 Msa0619870:CDS 45.0%
AGGAACAGCCTCAATAAGCT+TGG - chr4_2:71208817-71208836 None:intergenic 45.0%
TTCCTATGTAGTGAGTCCAG+AGG + chr4_2:71208832-71208851 Msa0619870:exon 45.0%
ATCCTCTGGACTCACTACAT+AGG - chr4_2:71208837-71208856 None:intergenic 45.0%
GGCAGAAAATTCATCACCCA+AGG - chr4_2:71209093-71209112 None:intergenic 45.0%
AAGTAGGACCCACGAGAATC+AGG + chr4_2:71206706-71206725 Msa0619870:five_prime_UTR 50.0%
AGTAGGACCCACGAGAATCA+GGG + chr4_2:71206707-71206726 Msa0619870:five_prime_UTR 50.0%
TGGCGTTCTCATCATCCATG+TGG + chr4_2:71206830-71206849 Msa0619870:CDS 50.0%
!! AAGAGTTTGTTGTGGGTGGC+GGG - chr4_2:71206919-71206938 None:intergenic 50.0%
ACAACAATCGCCGTCGTAAG+CGG + chr4_2:71207009-71207028 Msa0619870:CDS 50.0%
GTCTGAAAGGGAGAGAAGTG+CGG - chr4_2:71207055-71207074 None:intergenic 50.0%
ACTTCTCTCCCTTTCAGACC+CGG + chr4_2:71207056-71207075 Msa0619870:CDS 50.0%
TCGTCTTTCCGGGTCTGAAA+GGG - chr4_2:71207067-71207086 None:intergenic 50.0%
GAAAGATGAAGGGCCACTTC+AGG + chr4_2:71207266-71207285 Msa0619870:CDS 50.0%
! TGTGATGCTGGTTGTGGTAC+TGG + chr4_2:71207300-71207319 Msa0619870:CDS 50.0%
TCTTTCGATTCCGTTGGCCA+AGG + chr4_2:71207326-71207345 Msa0619870:CDS 50.0%
ACAAACAACGGCACCTTCCT+TGG - chr4_2:71207346-71207365 None:intergenic 50.0%
GGTTGCTGAAGCTGAGAAAC+AGG + chr4_2:71207389-71207408 Msa0619870:CDS 50.0%
GTAGGCACGAATGGCATGTT+AGG - chr4_2:71208078-71208097 None:intergenic 50.0%
CTAAGGTTTCACCCTGGTCA+TGG - chr4_2:71208163-71208182 None:intergenic 50.0%
!! TGGTCTCTAAGGTTTCACCC+TGG - chr4_2:71208169-71208188 None:intergenic 50.0%
ACCTGCGATGCCAAAGTTTG+TGG + chr4_2:71208479-71208498 Msa0619870:CDS 50.0%
ACCACAAACTTTGGCATCGC+AGG - chr4_2:71208483-71208502 None:intergenic 50.0%
AAGATATGCCCTGGTTGCCT+TGG - chr4_2:71208706-71208725 None:intergenic 50.0%
AGTGAGTCCAGAGGATTCAG+AGG + chr4_2:71208841-71208860 Msa0619870:exon 50.0%
CTGTTGCGGTTGAGAGTGGA+GGG - chr4_2:71206960-71206979 None:intergenic 55.0%
GGCGATTGTTGTGCCGTCTA+TGG - chr4_2:71207001-71207020 None:intergenic 55.0%
! AAAGGGAGAGAAGTGCGGTG+AGG - chr4_2:71207050-71207069 None:intergenic 55.0%
GTCGTCTTTCCGGGTCTGAA+AGG - chr4_2:71207068-71207087 None:intergenic 55.0%
TGTTCGCGTCGTCGTCTTTC+CGG - chr4_2:71207078-71207097 None:intergenic 55.0%
TCGATTCCGTTGGCCAAGGA+AGG + chr4_2:71207330-71207349 Msa0619870:CDS 55.0%
TCCTGAAAGGCGAAAGAGCC+CGG + chr4_2:71208297-71208316 Msa0619870:intron 55.0%
AAATACCCGGATCTTGCGCC+GGG - chr4_2:71208318-71208337 None:intergenic 55.0%
GAAATACCCGGATCTTGCGC+CGG - chr4_2:71208319-71208338 None:intergenic 55.0%
AGGGTTGGAGAGTTGTTCCC+TGG + chr4_2:71208675-71208694 Msa0619870:CDS 55.0%
GGGTTGGAGAGTTGTTCCCT+GGG + chr4_2:71208676-71208695 Msa0619870:CDS 55.0%
TATGCCCTGGTTGCCTTGGA+AGG - chr4_2:71208702-71208721 None:intergenic 55.0%
!! TGTTGAAAGGGCGTTGCGCA+AGG + chr4_2:71208740-71208759 Msa0619870:CDS 55.0%
!! AAAGGGCGTTGCGCAAGGTT+GGG + chr4_2:71208745-71208764 Msa0619870:CDS 55.0%
!! TTTGTTGTGGGTGGCGGGAG+AGG - chr4_2:71206914-71206933 None:intergenic 60.0%
GAGTGGAGGGATGGCGAATG+TGG - chr4_2:71206947-71206966 None:intergenic 60.0%
TGCGGTTGAGAGTGGAGGGA+TGG - chr4_2:71206956-71206975 None:intergenic 60.0%
GCTGTTGCGGTTGAGAGTGG+AGG - chr4_2:71206961-71206980 None:intergenic 60.0%
!! GTCTATGGCGCCGGTAACGT+CGG - chr4_2:71206986-71207005 None:intergenic 60.0%
GACGTTACCGGCGCCATAGA+CGG + chr4_2:71206985-71207004 Msa0619870:CDS 60.0%
TGTTGTGCCGTCTATGGCGC+CGG - chr4_2:71206995-71207014 None:intergenic 60.0%
ACAATCGCCGTCGTAAGCGG+TGG + chr4_2:71207012-71207031 Msa0619870:CDS 60.0%
GACGAAGCCACCGCTTACGA+CGG - chr4_2:71207022-71207041 None:intergenic 60.0%
GTTCGCGTCGTCGTCTTTCC+GGG - chr4_2:71207077-71207096 None:intergenic 60.0%
GGAAAGACGACGACGCGAAC+AGG + chr4_2:71207077-71207096 Msa0619870:CDS 60.0%
AAGACGACGACGCGAACAGG+CGG + chr4_2:71207080-71207099 Msa0619870:CDS 60.0%
GAACAGGCGGAGGAAGTAGG+CGG + chr4_2:71207093-71207112 Msa0619870:CDS 60.0%
ACGGCACCTTCCTTGGCCAA+CGG - chr4_2:71207339-71207358 None:intergenic 60.0%
AAAGAGCCCGGCGCAAGATC+CGG + chr4_2:71208309-71208328 Msa0619870:intron 60.0%
GTTGTTCCCTGGGCCTTCCA+AGG + chr4_2:71208686-71208705 Msa0619870:CDS 60.0%
TGGTTGCCTTGGAAGGCCCA+GGG - chr4_2:71208695-71208714 None:intergenic 60.0%
TGGGCCTTCCAAGGCAACCA+GGG + chr4_2:71208695-71208714 Msa0619870:CDS 60.0%
!! GAAAGGGCGTTGCGCAAGGT+TGG + chr4_2:71208744-71208763 Msa0619870:CDS 60.0%
!! TTGTGGGTGGCGGGAGAGGA+GGG - chr4_2:71206910-71206929 None:intergenic 65.0%
GCGGCTGTTGCGGTTGAGAG+TGG - chr4_2:71206964-71206983 None:intergenic 65.0%
GGTAACGTCGGCGGCTGTTG+CGG - chr4_2:71206974-71206993 None:intergenic 65.0%
GCAACAGCCGCCGACGTTAC+CGG + chr4_2:71206973-71206992 Msa0619870:CDS 65.0%
!! TATGGCGCCGGTAACGTCGG+CGG - chr4_2:71206983-71207002 None:intergenic 65.0%
GTAAGCGGTGGCTTCGTCGC+TGG + chr4_2:71207024-71207043 Msa0619870:CDS 65.0%
CGCGAACAGGCGGAGGAAGT+AGG + chr4_2:71207090-71207109 Msa0619870:CDS 65.0%
GCCGGGCTCTTTCGCCTTTC+AGG - chr4_2:71208301-71208320 None:intergenic 65.0%
AAGAGCCCGGCGCAAGATCC+GGG + chr4_2:71208310-71208329 Msa0619870:intron 65.0%
CTGGTTGCCTTGGAAGGCCC+AGG - chr4_2:71208696-71208715 None:intergenic 65.0%
CTGGGCCTTCCAAGGCAACC+AGG + chr4_2:71208694-71208713 Msa0619870:CDS 65.0%
!! GTTGTGGGTGGCGGGAGAGG+AGG - chr4_2:71206911-71206930 None:intergenic 70.0%
ACGACGACGCGAACAGGCGG+AGG + chr4_2:71207083-71207102 Msa0619870:CDS 70.0%
! GGGCGTTGCGCAAGGTTGGG+TGG + chr4_2:71208748-71208767 Msa0619870:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 71206703 71209171 71206703 ID=Msa0619870;Name=Msa0619870
chr4_2 mRNA 71206703 71209171 71206703 ID=Msa0619870-mRNA-1;Parent=Msa0619870;Name=Msa0619870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=126|1|1|1|1|1|2|329|327
chr4_2 exon 71206703 71207410 71206703 ID=Msa0619870-mRNA-1:exon:20972;Parent=Msa0619870-mRNA-1
chr4_2 exon 71208441 71209171 71208441 ID=Msa0619870-mRNA-1:exon:20973;Parent=Msa0619870-mRNA-1
chr4_2 five_prime_UTR 71206703 71206828 71206703 ID=Msa0619870-mRNA-1:five_prime_utr;Parent=Msa0619870-mRNA-1
chr4_2 CDS 71206829 71207410 71206829 ID=Msa0619870-mRNA-1:cds;Parent=Msa0619870-mRNA-1
chr4_2 CDS 71208441 71208842 71208441 ID=Msa0619870-mRNA-1:cds;Parent=Msa0619870-mRNA-1
chr4_2 three_prime_UTR 71208843 71209171 71208843 ID=Msa0619870-mRNA-1:three_prime_utr;Parent=Msa0619870-mRNA-1
Gene Sequence

>Msa0619870

ATGGCGTTCTCATCATCCATGTGGTCTTCTCTCTTTGTTCCAAACCCAAACAAAACTAACCGTTTCGCTACATTCTCTCCCTCCTCTCCCGCCACCCACAACAAACTCTTAACAACCACATTCGCCATCCCTCCACTCTCAACCGCAACAGCCGCCGACGTTACCGGCGCCATAGACGGCACAACAATCGCCGTCGTAAGCGGTGGCTTCGTCGCTGGCCTCACCGCACTTCTCTCCCTTTCAGACCCGGAAAGACGACGACGCGAACAGGCGGAGGAAGTAGGCGGTGATGACAAAGAAGTTGTGAGGGAGTATTTCAACAACAACGGGTTTCAACGATGGAAGAAGATTTACGGTGATACTGATGATGTTAATAGAGTTCAACGGGATATTAGGTTGGGACATTCCAAGACTGTTGAGAACGCTTTACAGATGTTGAAAGATGAAGGGCCACTTCAGGGTGTTACTATTTGTGATGCTGGTTGTGGTACTGGTTCTCTTTCGATTCCGTTGGCCAAGGAAGGTGCCGTTGTTTGTGCTAGTGATATATCAGCTGCCATGGTTGCTGAAGCTGAGAAACAGGCAAAAGAACTGCTTGTGTCCAGTGAAAATGGAGTGTCACCTGCGATGCCAAAGTTTGTGGTGAGTGATTTAGAGAGTTTGGATGGATTGTACGATACAGTGGTGTGCCTCGATGTTATGATTCATTACCCTCAGAGTAAAGCAGATGGGATGATTGCTCACCTTGCTTCTTTGGCAGAAAAGCGATTGATTCTGAGCTTTGCACCTAAGACATTTTATTATGATGCACTAAAGAGGGTTGGAGAGTTGTTCCCTGGGCCTTCCAAGGCAACCAGGGCATATCTTCATTCTGAAGCAGATGTTGAAAGGGCGTTGCGCAAGGTTGGGTGGACGATAAAGAAGAAAGGCTTAATCGCTACTCAATTTTACTTTGCCAAGCTTATTGAGGCTGTTCCTATGTAG

Protein sequence

>Msa0619870

MAFSSSMWSSLFVPNPNKTNRFATFSPSSPATHNKLLTTTFAIPPLSTATAADVTGAIDGTTIAVVSGGFVAGLTALLSLSDPERRRREQAEEVGGDDKEVVREYFNNNGFQRWKKIYGDTDDVNRVQRDIRLGHSKTVENALQMLKDEGPLQGVTICDAGCGTGSLSIPLAKEGAVVCASDISAAMVAEAEKQAKELLVSSENGVSPAMPKFVVSDLESLDGLYDTVVCLDVMIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDALKRVGELFPGPSKATRAYLHSEADVERALRKVGWTIKKKGLIATQFYFAKLIEAVPM*