AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0706490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706490 MtrunA17_Chr8g0385761 96.942 327 7 1 28 354 1 324 0.0 655
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706490 AT4G25080.6 73.810 294 66 4 66 354 39 326 1.08e-155 440
Msa0706490 AT4G25080.2 73.810 294 66 4 66 354 25 312 2.69e-155 439
Msa0706490 AT4G25080.3 73.810 294 66 4 66 354 25 312 2.69e-155 439
Msa0706490 AT4G25080.5 73.810 294 66 4 66 354 25 312 2.69e-155 439
Msa0706490 AT4G25080.1 73.810 294 66 4 66 354 25 312 2.69e-155 439
Msa0706490 AT4G25080.4 78.088 251 49 2 104 354 1 245 2.25e-145 411

Find 130 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGCTCACCTTGCTTCTT+TGG 0.174968 4_4:-79467979 Msa0706490:CDS
TGTTCGCGTCGTCGTCTTTC+CGG 0.201498 4_4:+79469499 None:intergenic
CTGGCATCGAGTTTCAAATT+TGG 0.243537 4_4:+79467537 None:intergenic
CAACTTGTGTCCAGTGAAAA+TGG 0.270170 4_4:-79468122 Msa0706490:CDS
GGATGATGAGAACGCCATTT+TGG 0.276616 4_4:+79469750 None:intergenic
CGCGATTGTTGTGCCGTCTA+TGG 0.289010 4_4:+79469576 None:intergenic
GGTGAGTGATTTAGAGAGTT+TGG 0.296867 4_4:-79468072 Msa0706490:CDS
TTTGTTGTGGGTGGCGGGAG+AGG 0.307225 4_4:+79469663 None:intergenic
GAACATGCAATGATAATAAA+AGG 0.309474 4_4:+79467461 None:intergenic
ATAGAGTTCAACGGGATATT+AGG 0.312977 4_4:-79469372 Msa0706490:CDS
TGTGATGCTGGTTGTGGTAC+TGG 0.330850 4_4:-79469274 Msa0706490:CDS
AAGTAGGACCCACGAGAATC+AGG 0.337401 4_4:-79469867 Msa0706490:five_prime_UTR
TCACTCAAATCAAACCAAAA+TGG 0.348627 4_4:-79469764 Msa0706490:CDS
GAATGCTATCTTATCTTTCC+TGG 0.348744 4_4:-79469828 Msa0706490:CDS
GCATCATAATAAAATGTCTT+AGG 0.351793 4_4:+79467927 None:intergenic
CAACGATGGAAGAAGATTTA+CGG 0.365499 4_4:-79469412 Msa0706490:CDS
GAAAGATGAAGGGCCACTTC+AGG 0.373746 4_4:-79469308 Msa0706490:CDS
GTTCGCGTCGTCGTCTTTCC+GGG 0.385307 4_4:+79469500 None:intergenic
TTGTGGGTGGCGGGAGAGGA+GGG 0.387295 4_4:+79469667 None:intergenic
GGAAAGACGACGACGCGAAC+AGG 0.395017 4_4:-79469497 Msa0706490:CDS
GGAATATAATATACATATCC+AGG 0.395360 4_4:+79467622 None:intergenic
ATACATATCCAGGGGATCAT+AGG 0.401558 4_4:+79467632 None:intergenic
GCAACAGCCGCCGACGTTAC+CGG 0.402705 4_4:-79469601 Msa0706490:CDS
AATATAATCAATGCATCAAC+TGG 0.408032 4_4:+79467518 None:intergenic
GTTGTGGGTGGCGGGAGAGG+AGG 0.411029 4_4:+79469666 None:intergenic
GGTGTTACTATTTGTGATGC+TGG 0.416395 4_4:-79469286 Msa0706490:CDS
AATGGCTTACAATATACATT+AGG 0.416961 4_4:+79467682 None:intergenic
GGTTGCTGAAGCTGAGAAAC+AGG 0.419084 4_4:-79469185 Msa0706490:intron
TGAGAGTGTGAGTGTGAGTT+GGG 0.425010 4_4:+79469784 None:intergenic
AAAGGGCGTTGCACAAGGTT+GGG 0.430716 4_4:-79467827 Msa0706490:CDS
TAAGAGTTTGTTGTGGGTGG+CGG 0.431253 4_4:+79469657 None:intergenic
AGGGTTGGAGAGTTGTTCCC+TGG 0.435316 4_4:-79467897 Msa0706490:CDS
CTGAAAGAAGTTTGAAAAGT+AGG 0.444048 4_4:-79469883 None:intergenic
GTGAGAGTGTGAGTGTGAGT+TGG 0.444943 4_4:+79469783 None:intergenic
GTAAGCGGTGGCTTCGTCGC+TGG 0.445724 4_4:-79469550 Msa0706490:CDS
TTACAGATGTTGAAAGATGA+AGG 0.450243 4_4:-79469319 Msa0706490:CDS
AAATCACTCACCACAAACTT+TGG 0.452354 4_4:+79468083 None:intergenic
AAGTGATGATATTGTTATCC+AGG 0.465411 4_4:+79469810 None:intergenic
CTGGGCCTTCCAAGGCAACC+AGG 0.466683 4_4:-79467878 Msa0706490:CDS
TGATGTTAATAGAGTTCAAC+GGG 0.468337 4_4:-79469380 Msa0706490:CDS
ACTATTTGTGATGCTGGTTG+TGG 0.469095 4_4:-79469280 Msa0706490:CDS
CTGGTTGCCTTGGAAGGCCC+AGG 0.472074 4_4:+79467879 None:intergenic
AGTGATTTAGAGAGTTTGGA+TGG 0.476634 4_4:-79468068 Msa0706490:CDS
GGGAGTATTTCAACAACAAC+GGG 0.479355 4_4:-79469438 Msa0706490:CDS
AAAGATGAAGGGCCACTTCA+GGG 0.481133 4_4:-79469307 Msa0706490:CDS
GTCGTCTTTCCGGGTCTGAA+AGG 0.481970 4_4:+79469509 None:intergenic
AAGAGTTTGTTGTGGGTGGC+GGG 0.483942 4_4:+79469658 None:intergenic
TAAAGCATTCTCAACAGTCT+TGG 0.484120 4_4:+79469339 None:intergenic
GGTTGTTAAGAGTTTGTTGT+GGG 0.485748 4_4:+79469651 None:intergenic
GTTCAACGGGATATTAGGTT+GGG 0.491602 4_4:-79469367 Msa0706490:CDS
AGGATAACATAGCATACAAA+AGG 0.495144 4_4:+79467652 None:intergenic
AGTTCAACGGGATATTAGGT+TGG 0.497728 4_4:-79469368 Msa0706490:CDS
TTTATTATGATGCACTAAAG+AGG 0.498288 4_4:-79467917 Msa0706490:CDS
TTACTTTGCCAAGCTTATTG+AGG 0.499395 4_4:-79467766 Msa0706490:CDS
TTCTGAAGCAGATGTTGAAA+GGG 0.501417 4_4:-79467844 Msa0706490:CDS
TCGTCTTTCCGGGTCTGAAA+GGG 0.501629 4_4:+79469510 None:intergenic
ACCACAAACTTTGGCATCGC+AGG 0.503004 4_4:+79468092 None:intergenic
AAGATATGCCCTGGTTGCCT+TGG 0.503839 4_4:+79467869 None:intergenic
AAACTTACCTCTGAATCCTC+TGG 0.506783 4_4:+79467724 None:intergenic
CAGCATCATTTACGCTAAGA+AGG 0.507758 4_4:+79467601 None:intergenic
TCGATTCCGTTGGCGAAGGA+AGG 0.509084 4_4:-79469244 Msa0706490:CDS
ACGACGACGCGAACAGGCGG+AGG 0.509203 4_4:-79469491 Msa0706490:CDS
ACCTGCGATGCCAAAGTTTG+TGG 0.512251 4_4:-79468093 Msa0706490:CDS
GGTAACGTCGGCGGCTGTTG+CGG 0.517328 4_4:+79469603 None:intergenic
ATTCTGAAGCAGATGTTGAA+AGG 0.518414 4_4:-79467845 Msa0706490:CDS
TATGCCCTGGTTGCCTTGGA+AGG 0.522393 4_4:+79467873 None:intergenic
TGGTTCTCTTTCGATTCCGT+TGG 0.522603 4_4:-79469254 Msa0706490:CDS
ACTTCTCTCCCTTTCAGACC+CGG 0.523310 4_4:-79469518 Msa0706490:CDS
GAAAGGGCGTTGCACAAGGT+TGG 0.524004 4_4:-79467828 Msa0706490:CDS
TATGATGCACTAAAGAGGGT+TGG 0.524966 4_4:-79467912 Msa0706490:CDS
TCTTTCGATTCCGTTGGCGA+AGG 0.532526 4_4:-79469248 Msa0706490:CDS
GTTGTTCCCTGGGCCTTCCA+AGG 0.535217 4_4:-79467886 Msa0706490:CDS
GTCTATGGCGCCGGTAACGT+CGG 0.538591 4_4:+79469591 None:intergenic
GCGGCTGTTGCGGTTGAGAG+TGG 0.540172 4_4:+79469613 None:intergenic
TTATTATGATGCACTAAAGA+GGG 0.543982 4_4:-79467916 Msa0706490:CDS
GCTGTTGCGGTTGAGAGTGG+AGG 0.545699 4_4:+79469616 None:intergenic
CGCGAACAGGCGGAGGAAGT+AGG 0.545859 4_4:-79469484 Msa0706490:CDS
TCCCATCTGCTTTACTCTGA+GGG 0.551667 4_4:+79468003 None:intergenic
TTTCTCAGCTTCAGCAACCA+TGG 0.556058 4_4:+79469189 None:intergenic
GGGTTGGAGAGTTGTTCCCT+GGG 0.560240 4_4:-79467896 Msa0706490:CDS
AGGAACAGCCTCAATAAGCT+TGG 0.560754 4_4:+79467758 None:intergenic
GGCAGAAAATTCATCACCCA+AGG 0.565337 4_4:+79467482 None:intergenic
AGTAGGACCCACGAGAATCA+GGG 0.566735 4_4:-79469866 Msa0706490:five_prime_UTR
AAGACGACGACGCGAACAGG+CGG 0.569936 4_4:-79469494 Msa0706490:CDS
TGGTTGCCTTGGAAGGCCCA+GGG 0.570031 4_4:+79467880 None:intergenic
TGTTGTGCCGTCTATGGCGC+CGG 0.571715 4_4:+79469582 None:intergenic
TGGGCCTTCCAAGGCAACCA+GGG 0.571898 4_4:-79467877 Msa0706490:CDS
TGGTTGTTAAGAGTTTGTTG+TGG 0.572241 4_4:+79469650 None:intergenic
GACGTTACCGGCGCCATAGA+CGG 0.574011 4_4:-79469589 Msa0706490:CDS
ACAACAACGGGTTTCAACGA+TGG 0.574622 4_4:-79469426 Msa0706490:CDS
TGTTAAGAGTTTGTTGTGGG+TGG 0.574727 4_4:+79469654 None:intergenic
GAGTGGAGGGATGGCGAATG+TGG 0.575620 4_4:+79469630 None:intergenic
TGTTGAAAGGGCGTTGCACA+AGG 0.576683 4_4:-79467832 Msa0706490:CDS
TATGTTATCCTATGATCCCC+TGG 0.581885 4_4:-79467640 Msa0706490:three_prime_UTR
AGGGAGAGAATGTAGCGAAA+CGG 0.590209 4_4:+79469686 None:intergenic
TACCCTCAGAGTAAAGCAGA+TGG 0.593009 4_4:-79468005 Msa0706490:CDS
ATCCCATCTGCTTTACTCTG+AGG 0.595461 4_4:+79468002 None:intergenic
GGGCGTTGCACAAGGTTGGG+TGG 0.596548 4_4:-79467824 Msa0706490:CDS
AGTGAGTCCAGAGGATTCAG+AGG 0.601420 4_4:-79467731 Msa0706490:three_prime_UTR
TACAGATGTTGAAAGATGAA+GGG 0.602628 4_4:-79469318 Msa0706490:CDS
CAAATAGTAACACCCTGAAG+TGG 0.608139 4_4:+79469295 None:intergenic
CTGTTGCGGTTGAGAGTGGA+GGG 0.608229 4_4:+79469617 None:intergenic
GAATATAATATACATATCCA+GGG 0.609774 4_4:+79467623 None:intergenic
GGGTGGACGATAAAGAAGAA+AGG 0.614466 4_4:-79467807 Msa0706490:CDS
TGCATGTTCTCAAAATGTCA+AGG 0.621246 4_4:-79467447 Msa0706490:three_prime_UTR
TATGGCGCCGGTAACGTCGG+CGG 0.621518 4_4:+79469594 None:intergenic
ACGAGAATCAGGGAAAAGCA+TGG 0.621841 4_4:-79469856 Msa0706490:five_prime_UTR
TAGTGATATATCAGCTGCCA+TGG 0.622099 4_4:-79469206 Msa0706490:CDS
ACGGCACCTTCCTTCGCCAA+CGG 0.623201 4_4:+79469238 None:intergenic
ACAACAATCGCGGTCGTAAG+CGG 0.623303 4_4:-79469565 Msa0706490:CDS
AGGGAGTATTTCAACAACAA+CGG 0.626963 4_4:-79469439 Msa0706490:CDS
ACCCTCAGAGTAAAGCAGAT+GGG 0.629699 4_4:-79468004 Msa0706490:CDS
GTGATGACAAAGAAGTTGTG+AGG 0.636702 4_4:-79469459 Msa0706490:CDS
TGCGGTTGAGAGTGGAGGGA+TGG 0.637524 4_4:+79469621 None:intergenic
AACAAAGAGAGAAGACCACA+TGG 0.638571 4_4:+79469729 None:intergenic
ATGATGTTAATAGAGTTCAA+CGG 0.639280 4_4:-79469381 Msa0706490:CDS
TTCAGAATGAAGATATGCCC+TGG 0.639551 4_4:+79467860 None:intergenic
TGATGACAAAGAAGTTGTGA+GGG 0.644653 4_4:-79469458 Msa0706490:CDS
ACAATCGCGGTCGTAAGCGG+TGG 0.652916 4_4:-79469562 Msa0706490:CDS
ATCCTCTGGACTCACTACAT+AGG 0.659752 4_4:+79467738 None:intergenic
GTCTGAAAGGGAGAGAAGTG+CGG 0.675558 4_4:+79469522 None:intergenic
CATAGACGGCACAACAATCG+CGG 0.676803 4_4:-79469575 Msa0706490:CDS
GGATGGATTGTACGATACAG+TGG 0.678861 4_4:-79468051 Msa0706490:CDS
GAACAGGCGGAGGAAGTAGG+CGG 0.681114 4_4:-79469481 Msa0706490:CDS
TTCCTATGTAGTGAGTCCAG+AGG 0.689702 4_4:-79467740 Msa0706490:exon
TATATCACTAGCACAAACAA+CGG 0.690655 4_4:+79469219 None:intergenic
AATATAATATACATATCCAG+GGG 0.707394 4_4:+79467624 None:intergenic
TGGCGTTCTCATCATCCATG+TGG 0.707884 4_4:-79469744 Msa0706490:CDS
AAAGGGAGAGAAGTGCGGTG+AGG 0.719705 4_4:+79469527 None:intergenic
GGTAATGAATCATAACATCG+AGG 0.752533 4_4:+79468024 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTGTAATATGTAA+CGG - chr4_4:79469725-79469744 Msa0706490:CDS 10.0%
!! TTATATAAATAGGAAGATTA+TGG - chr4_4:79468590-79468609 Msa0706490:intron 15.0%
!!! ATTTTATCCTATCTAAGTTT+TGG + chr4_4:79468255-79468274 None:intergenic 20.0%
!! AGAGAAGGATTTATATAAAT+AGG - chr4_4:79468580-79468599 Msa0706490:intron 20.0%
!!! GCAACTTTTTTTTTTTTTAG+GGG + chr4_4:79468675-79468694 None:intergenic 20.0%
!!! CGCAACTTTTTTTTTTTTTA+GGG + chr4_4:79468676-79468695 None:intergenic 20.0%
!!! TCGCAACTTTTTTTTTTTTT+AGG + chr4_4:79468677-79468696 None:intergenic 20.0%
!! GACAATAATAATGTAATCAT+TGG - chr4_4:79468969-79468988 Msa0706490:intron 20.0%
!! AATATAATATACATATCCAG+GGG + chr4_4:79469672-79469691 None:intergenic 20.0%
!! GAATATAATATACATATCCA+GGG + chr4_4:79469673-79469692 None:intergenic 20.0%
! ATGATGTTAATAGAGTTCAA+CGG - chr4_4:79467912-79467931 Msa0706490:CDS 25.0%
!! CGTGAATATCATTTTGTAAA+CGG + chr4_4:79468449-79468468 None:intergenic 25.0%
! CAATTGATGTTTGTAAACAT+CGG + chr4_4:79468476-79468495 None:intergenic 25.0%
!!! TAAGTTGTTTTTGTTAGAGA+AGG - chr4_4:79468565-79468584 Msa0706490:intron 25.0%
!!! TTTTTTTTTTAGGGGAATAG+AGG + chr4_4:79468667-79468686 None:intergenic 25.0%
!!! TTGATAAAAAGTGTTTTGGT+AGG + chr4_4:79468817-79468836 None:intergenic 25.0%
!!! TGCTTTGATAAAAAGTGTTT+TGG + chr4_4:79468821-79468840 None:intergenic 25.0%
! TTATTGTCAGACATTGTAAA+AGG + chr4_4:79468957-79468976 None:intergenic 25.0%
!! TTTAGACAATTTGAAATACC+CGG + chr4_4:79469052-79469071 None:intergenic 25.0%
!!! GTTTTGAATGAATTTGACTT+TGG + chr4_4:79469076-79469095 None:intergenic 25.0%
! GCATCATAATAAAATGTCTT+AGG + chr4_4:79469369-79469388 None:intergenic 25.0%
! TTTATTATGATGCACTAAAG+AGG - chr4_4:79469376-79469395 Msa0706490:CDS 25.0%
! TTATTATGATGCACTAAAGA+GGG - chr4_4:79469377-79469396 Msa0706490:CDS 25.0%
! AATGGCTTACAATATACATT+AGG + chr4_4:79469614-79469633 None:intergenic 25.0%
! GGAATATAATATACATATCC+AGG + chr4_4:79469674-79469693 None:intergenic 25.0%
! AATATAATCAATGCATCAAC+TGG + chr4_4:79469778-79469797 None:intergenic 25.0%
!!! TATTTATTTTGCTACTTCCT+TGG - chr4_4:79469794-79469813 Msa0706490:CDS 25.0%
!!! ATTTATTTTGCTACTTCCTT+GGG - chr4_4:79469795-79469814 Msa0706490:CDS 25.0%
! GAACATGCAATGATAATAAA+AGG + chr4_4:79469835-79469854 None:intergenic 25.0%
AAGTGATGATATTGTTATCC+AGG + chr4_4:79467486-79467505 None:intergenic 30.0%
TCACTCAAATCAAACCAAAA+TGG - chr4_4:79467529-79467548 Msa0706490:three_prime_UTR 30.0%
TGATGTTAATAGAGTTCAAC+GGG - chr4_4:79467913-79467932 Msa0706490:CDS 30.0%
TTACAGATGTTGAAAGATGA+AGG - chr4_4:79467974-79467993 Msa0706490:CDS 30.0%
TACAGATGTTGAAAGATGAA+GGG - chr4_4:79467975-79467994 Msa0706490:CDS 30.0%
TATATCACTAGCACAAACAA+CGG + chr4_4:79468077-79468096 None:intergenic 30.0%
CTTTACATTTCAGCAATCAA+AGG + chr4_4:79468148-79468167 None:intergenic 30.0%
CTAAAATAACGCTTCACATA+CGG + chr4_4:79468201-79468220 None:intergenic 30.0%
! ATTGACTCCAAAACTTAGAT+AGG - chr4_4:79468245-79468264 Msa0706490:intron 30.0%
TGAATATCGTAGAACAATAG+CGG - chr4_4:79468331-79468350 Msa0706490:intron 30.0%
ATCATGTTAGAGGTTAGAAT+AGG - chr4_4:79468526-79468545 Msa0706490:intron 30.0%
TCATGTTAGAGGTTAGAATA+GGG - chr4_4:79468527-79468546 Msa0706490:intron 30.0%
TTCTGTTCCATTCAATTCTT+AGG - chr4_4:79468771-79468790 Msa0706490:intron 30.0%
GTCATGGGTCAAATTTAATA+GGG + chr4_4:79468868-79468887 None:intergenic 30.0%
CATACAAAAGGACACAAAAA+TGG + chr4_4:79469632-79469651 None:intergenic 30.0%
AGGATAACATAGCATACAAA+AGG + chr4_4:79469644-79469663 None:intergenic 30.0%
GAATGCTATCTTATCTTTCC+TGG - chr4_4:79467465-79467484 Msa0706490:three_prime_UTR 35.0%
!!! CGAAACGGTTAGTTTTGTTT+GGG + chr4_4:79467595-79467614 None:intergenic 35.0%
!! GGTTGTTAAGAGTTTGTTGT+GGG + chr4_4:79467645-79467664 None:intergenic 35.0%
!! TGGTTGTTAAGAGTTTGTTG+TGG + chr4_4:79467646-79467665 None:intergenic 35.0%
TGATGACAAAGAAGTTGTGA+GGG - chr4_4:79467835-79467854 Msa0706490:CDS 35.0%
!! AGGGAGTATTTCAACAACAA+CGG - chr4_4:79467854-79467873 Msa0706490:CDS 35.0%
CAACGATGGAAGAAGATTTA+CGG - chr4_4:79467881-79467900 Msa0706490:CDS 35.0%
ATAGAGTTCAACGGGATATT+AGG - chr4_4:79467921-79467940 Msa0706490:CDS 35.0%
! TAAAGCATTCTCAACAGTCT+TGG + chr4_4:79467957-79467976 None:intergenic 35.0%
ATAGCTGTTATTCGACAACA+CGG - chr4_4:79468298-79468317 Msa0706490:intron 35.0%
!!! CAACTCATTTTGAAGTGGAA+GGG - chr4_4:79468403-79468422 Msa0706490:intron 35.0%
! TGTGTTAGGAAGCACAATTA+CGG + chr4_4:79468507-79468526 None:intergenic 35.0%
TTCCTAACACATCATGTTAG+AGG - chr4_4:79468516-79468535 Msa0706490:intron 35.0%
AACCTCTAACATGATGTGTT+AGG + chr4_4:79468521-79468540 None:intergenic 35.0%
TTGTGAAAGGGAAACCTTTA+AGG - chr4_4:79468702-79468721 Msa0706490:intron 35.0%
ATGAGAGAATCTCTCCTTAA+AGG + chr4_4:79468719-79468738 None:intergenic 35.0%
TTAGGGACCTAAGAATTGAA+TGG + chr4_4:79468781-79468800 None:intergenic 35.0%
GGTCATGGGTCAAATTTAAT+AGG + chr4_4:79468869-79468888 None:intergenic 35.0%
ATTAAATTTGACCCATGACC+AGG - chr4_4:79468869-79468888 Msa0706490:intron 35.0%
TTAAATTTGACCCATGACCA+GGG - chr4_4:79468870-79468889 Msa0706490:intron 35.0%
TGTCAGACATTGTAAAAGGA+GGG + chr4_4:79468953-79468972 None:intergenic 35.0%
TTGTCAGACATTGTAAAAGG+AGG + chr4_4:79468954-79468973 None:intergenic 35.0%
! AAGTGTGTTTTTCACTTTGC+AGG - chr4_4:79469140-79469159 Msa0706490:intron 35.0%
AAATCACTCACCACAAACTT+TGG + chr4_4:79469213-79469232 None:intergenic 35.0%
AGTGATTTAGAGAGTTTGGA+TGG - chr4_4:79469225-79469244 Msa0706490:CDS 35.0%
GGTAATGAATCATAACATCG+AGG + chr4_4:79469272-79469291 None:intergenic 35.0%
!! ATTCTGAAGCAGATGTTGAA+AGG - chr4_4:79469448-79469467 Msa0706490:CDS 35.0%
!! TTCTGAAGCAGATGTTGAAA+GGG - chr4_4:79469449-79469468 Msa0706490:CDS 35.0%
TTACTTTGCCAAGCTTATTG+AGG - chr4_4:79469527-79469546 Msa0706490:CDS 35.0%
! GGTAAGTTTTGCATCATTAG+AGG - chr4_4:79469583-79469602 Msa0706490:CDS 35.0%
TGCATGTTCTCAAAATGTCA+AGG - chr4_4:79469846-79469865 Msa0706490:exon 35.0%
AACAAAGAGAGAAGACCACA+TGG + chr4_4:79467567-79467586 None:intergenic 40.0%
!!! CGGTTAGTTTTGTTTGGGTT+TGG + chr4_4:79467590-79467609 None:intergenic 40.0%
!!! GCGAAACGGTTAGTTTTGTT+TGG + chr4_4:79467596-79467615 None:intergenic 40.0%
!! TGTTAAGAGTTTGTTGTGGG+TGG + chr4_4:79467642-79467661 None:intergenic 40.0%
GTGATGACAAAGAAGTTGTG+AGG - chr4_4:79467834-79467853 Msa0706490:CDS 40.0%
!! GGGAGTATTTCAACAACAAC+GGG - chr4_4:79467855-79467874 Msa0706490:CDS 40.0%
AGTTCAACGGGATATTAGGT+TGG - chr4_4:79467925-79467944 Msa0706490:CDS 40.0%
GTTCAACGGGATATTAGGTT+GGG - chr4_4:79467926-79467945 Msa0706490:CDS 40.0%
CAAATAGTAACACCCTGAAG+TGG + chr4_4:79468001-79468020 None:intergenic 40.0%
!! GGTGTTACTATTTGTGATGC+TGG - chr4_4:79468007-79468026 Msa0706490:CDS 40.0%
! ACTATTTGTGATGCTGGTTG+TGG - chr4_4:79468013-79468032 Msa0706490:CDS 40.0%
TAGTGATATATCAGCTGCCA+TGG - chr4_4:79468087-79468106 Msa0706490:CDS 40.0%
!! GCTTGCAACTCATTTTGAAG+TGG - chr4_4:79468398-79468417 Msa0706490:intron 40.0%
!!! GCAACTCATTTTGAAGTGGA+AGG - chr4_4:79468402-79468421 Msa0706490:intron 40.0%
AGTTGCGACTCTATTGTGAA+AGG - chr4_4:79468689-79468708 Msa0706490:intron 40.0%
GTTGCGACTCTATTGTGAAA+GGG - chr4_4:79468690-79468709 Msa0706490:intron 40.0%
CCAGACAAATTTGGTCTCTA+AGG + chr4_4:79468901-79468920 None:intergenic 40.0%
CCTTAGAGACCAAATTTGTC+TGG - chr4_4:79468898-79468917 Msa0706490:intron 40.0%
GAACACACACCAGACAAATT+TGG + chr4_4:79468910-79468929 None:intergenic 40.0%
GTCAGACATTGTAAAAGGAG+GGG + chr4_4:79468952-79468971 None:intergenic 40.0%
CTTTCAGGATCAGAACTAAG+GGG + chr4_4:79469007-79469026 None:intergenic 40.0%
CCTTTCAGGATCAGAACTAA+GGG + chr4_4:79469008-79469027 None:intergenic 40.0%
CAACTTGTGTCCAGTGAAAA+TGG - chr4_4:79469171-79469190 Msa0706490:intron 40.0%
GGTGAGTGATTTAGAGAGTT+TGG - chr4_4:79469221-79469240 Msa0706490:CDS 40.0%
TATGATGCACTAAAGAGGGT+TGG - chr4_4:79469381-79469400 Msa0706490:CDS 40.0%
TTCAGAATGAAGATATGCCC+TGG + chr4_4:79469436-79469455 None:intergenic 40.0%
AAACTTACCTCTGAATCCTC+TGG + chr4_4:79469572-79469591 None:intergenic 40.0%
TATGTTATCCTATGATCCCC+TGG - chr4_4:79469653-79469672 Msa0706490:CDS 40.0%
ATACATATCCAGGGGATCAT+AGG + chr4_4:79469664-79469683 None:intergenic 40.0%
CAGCATCATTTACGCTAAGA+AGG + chr4_4:79469695-79469714 None:intergenic 40.0%
! CTGGCATCGAGTTTCAAATT+TGG + chr4_4:79469759-79469778 None:intergenic 40.0%
! TGCTTTTCCCTGATTCTCGT+GGG + chr4_4:79467437-79467456 None:intergenic 45.0%
! ATGCTTTTCCCTGATTCTCG+TGG + chr4_4:79467438-79467457 None:intergenic 45.0%
ACGAGAATCAGGGAAAAGCA+TGG - chr4_4:79467437-79467456 Msa0706490:three_prime_UTR 45.0%
! TGAGAGTGTGAGTGTGAGTT+GGG + chr4_4:79467512-79467531 None:intergenic 45.0%
! GGATGATGAGAACGCCATTT+TGG + chr4_4:79467546-79467565 None:intergenic 45.0%
AGGGAGAGAATGTAGCGAAA+CGG + chr4_4:79467610-79467629 None:intergenic 45.0%
!! TAAGAGTTTGTTGTGGGTGG+CGG + chr4_4:79467639-79467658 None:intergenic 45.0%
! ACAACAACGGGTTTCAACGA+TGG - chr4_4:79467867-79467886 Msa0706490:CDS 45.0%
AAAGATGAAGGGCCACTTCA+GGG - chr4_4:79467986-79468005 Msa0706490:CDS 45.0%
TGGTTCTCTTTCGATTCCGT+TGG - chr4_4:79468039-79468058 Msa0706490:CDS 45.0%
TTTCTCAGCTTCAGCAACCA+TGG + chr4_4:79468107-79468126 None:intergenic 45.0%
TAGGCACGAATGGCATGTTA+GGG + chr4_4:79468798-79468817 None:intergenic 45.0%
!!! AGTGTTTTGGTAGGCACGAA+TGG + chr4_4:79468808-79468827 None:intergenic 45.0%
TAAGGTTTCACCCTGGTCAT+GGG + chr4_4:79468883-79468902 None:intergenic 45.0%
GGTGTGTGTTCTGTCAACTA+AGG - chr4_4:79468919-79468938 Msa0706490:intron 45.0%
!! CCCTTAGTTCTGATCCTGAA+AGG - chr4_4:79469005-79469024 Msa0706490:intron 45.0%
GCCTTTCAGGATCAGAACTA+AGG + chr4_4:79469009-79469028 None:intergenic 45.0%
! AGGTGACACTCCATTTTCAC+TGG + chr4_4:79469184-79469203 None:intergenic 45.0%
!! GGATGGATTGTACGATACAG+TGG - chr4_4:79469242-79469261 Msa0706490:CDS 45.0%
TACCCTCAGAGTAAAGCAGA+TGG - chr4_4:79469288-79469307 Msa0706490:CDS 45.0%
ACCCTCAGAGTAAAGCAGAT+GGG - chr4_4:79469289-79469308 Msa0706490:CDS 45.0%
TCCCATCTGCTTTACTCTGA+GGG + chr4_4:79469293-79469312 None:intergenic 45.0%
ATCCCATCTGCTTTACTCTG+AGG + chr4_4:79469294-79469313 None:intergenic 45.0%
GATTGCTCACCTTGCTTCTT+TGG - chr4_4:79469314-79469333 Msa0706490:CDS 45.0%
! GCTTTTCTGCCAAAGAAGCA+AGG + chr4_4:79469326-79469345 None:intergenic 45.0%
GGGTGGACGATAAAGAAGAA+AGG - chr4_4:79469486-79469505 Msa0706490:CDS 45.0%
AGGAACAGCCTCAATAAGCT+TGG + chr4_4:79469538-79469557 None:intergenic 45.0%
TTCCTATGTAGTGAGTCCAG+AGG - chr4_4:79469553-79469572 Msa0706490:CDS 45.0%
ATCCTCTGGACTCACTACAT+AGG + chr4_4:79469558-79469577 None:intergenic 45.0%
GGCAGAAAATTCATCACCCA+AGG + chr4_4:79469814-79469833 None:intergenic 45.0%
AAGTAGGACCCACGAGAATC+AGG - chr4_4:79467426-79467445 Msa0706490:three_prime_UTR 50.0%
AGTAGGACCCACGAGAATCA+GGG - chr4_4:79467427-79467446 Msa0706490:three_prime_UTR 50.0%
! GTGAGAGTGTGAGTGTGAGT+TGG + chr4_4:79467513-79467532 None:intergenic 50.0%
TGGCGTTCTCATCATCCATG+TGG - chr4_4:79467549-79467568 Msa0706490:three_prime_UTR 50.0%
!! AAGAGTTTGTTGTGGGTGGC+GGG + chr4_4:79467638-79467657 None:intergenic 50.0%
CATAGACGGCACAACAATCG+CGG - chr4_4:79467718-79467737 Msa0706490:three_prime_UTR 50.0%
ACAACAATCGCGGTCGTAAG+CGG - chr4_4:79467728-79467747 Msa0706490:three_prime_UTR 50.0%
GTCTGAAAGGGAGAGAAGTG+CGG + chr4_4:79467774-79467793 None:intergenic 50.0%
ACTTCTCTCCCTTTCAGACC+CGG - chr4_4:79467775-79467794 Msa0706490:CDS 50.0%
TCGTCTTTCCGGGTCTGAAA+GGG + chr4_4:79467786-79467805 None:intergenic 50.0%
GAAAGATGAAGGGCCACTTC+AGG - chr4_4:79467985-79468004 Msa0706490:CDS 50.0%
! TGTGATGCTGGTTGTGGTAC+TGG - chr4_4:79468019-79468038 Msa0706490:CDS 50.0%
TCTTTCGATTCCGTTGGCGA+AGG - chr4_4:79468045-79468064 Msa0706490:CDS 50.0%
GGTTGCTGAAGCTGAGAAAC+AGG - chr4_4:79468108-79468127 Msa0706490:CDS 50.0%
GTAGGCACGAATGGCATGTT+AGG + chr4_4:79468799-79468818 None:intergenic 50.0%
CTAAGGTTTCACCCTGGTCA+TGG + chr4_4:79468884-79468903 None:intergenic 50.0%
!! TGGTCTCTAAGGTTTCACCC+TGG + chr4_4:79468890-79468909 None:intergenic 50.0%
ACCTGCGATGCCAAAGTTTG+TGG - chr4_4:79469200-79469219 Msa0706490:CDS 50.0%
ACCACAAACTTTGGCATCGC+AGG + chr4_4:79469204-79469223 None:intergenic 50.0%
AAGATATGCCCTGGTTGCCT+TGG + chr4_4:79469427-79469446 None:intergenic 50.0%
!! TGTTGAAAGGGCGTTGCACA+AGG - chr4_4:79469461-79469480 Msa0706490:CDS 50.0%
!! AAAGGGCGTTGCACAAGGTT+GGG - chr4_4:79469466-79469485 Msa0706490:CDS 50.0%
AGTGAGTCCAGAGGATTCAG+AGG - chr4_4:79469562-79469581 Msa0706490:CDS 50.0%
CTGTTGCGGTTGAGAGTGGA+GGG + chr4_4:79467679-79467698 None:intergenic 55.0%
CGCGATTGTTGTGCCGTCTA+TGG + chr4_4:79467720-79467739 None:intergenic 55.0%
! AAAGGGAGAGAAGTGCGGTG+AGG + chr4_4:79467769-79467788 None:intergenic 55.0%
GTCGTCTTTCCGGGTCTGAA+AGG + chr4_4:79467787-79467806 None:intergenic 55.0%
TGTTCGCGTCGTCGTCTTTC+CGG + chr4_4:79467797-79467816 None:intergenic 55.0%
TCGATTCCGTTGGCGAAGGA+AGG - chr4_4:79468049-79468068 Msa0706490:CDS 55.0%
TCCTGAAAGGCGAAAGAGCC+CGG - chr4_4:79469018-79469037 Msa0706490:intron 55.0%
AAATACCCGGATCTTGCGCC+GGG + chr4_4:79469039-79469058 None:intergenic 55.0%
GAAATACCCGGATCTTGCGC+CGG + chr4_4:79469040-79469059 None:intergenic 55.0%
AGGGTTGGAGAGTTGTTCCC+TGG - chr4_4:79469396-79469415 Msa0706490:CDS 55.0%
GGGTTGGAGAGTTGTTCCCT+GGG - chr4_4:79469397-79469416 Msa0706490:CDS 55.0%
TATGCCCTGGTTGCCTTGGA+AGG + chr4_4:79469423-79469442 None:intergenic 55.0%
!! GAAAGGGCGTTGCACAAGGT+TGG - chr4_4:79469465-79469484 Msa0706490:CDS 55.0%
!! TTTGTTGTGGGTGGCGGGAG+AGG + chr4_4:79467633-79467652 None:intergenic 60.0%
GAGTGGAGGGATGGCGAATG+TGG + chr4_4:79467666-79467685 None:intergenic 60.0%
TGCGGTTGAGAGTGGAGGGA+TGG + chr4_4:79467675-79467694 None:intergenic 60.0%
GCTGTTGCGGTTGAGAGTGG+AGG + chr4_4:79467680-79467699 None:intergenic 60.0%
!! GTCTATGGCGCCGGTAACGT+CGG + chr4_4:79467705-79467724 None:intergenic 60.0%
GACGTTACCGGCGCCATAGA+CGG - chr4_4:79467704-79467723 Msa0706490:three_prime_UTR 60.0%
TGTTGTGCCGTCTATGGCGC+CGG + chr4_4:79467714-79467733 None:intergenic 60.0%
ACAATCGCGGTCGTAAGCGG+TGG - chr4_4:79467731-79467750 Msa0706490:three_prime_UTR 60.0%
GTTCGCGTCGTCGTCTTTCC+GGG + chr4_4:79467796-79467815 None:intergenic 60.0%
GGAAAGACGACGACGCGAAC+AGG - chr4_4:79467796-79467815 Msa0706490:CDS 60.0%
AAGACGACGACGCGAACAGG+CGG - chr4_4:79467799-79467818 Msa0706490:CDS 60.0%
GAACAGGCGGAGGAAGTAGG+CGG - chr4_4:79467812-79467831 Msa0706490:CDS 60.0%
ACGGCACCTTCCTTCGCCAA+CGG + chr4_4:79468058-79468077 None:intergenic 60.0%
AAAGAGCCCGGCGCAAGATC+CGG - chr4_4:79469030-79469049 Msa0706490:intron 60.0%
GTTGTTCCCTGGGCCTTCCA+AGG - chr4_4:79469407-79469426 Msa0706490:CDS 60.0%
TGGTTGCCTTGGAAGGCCCA+GGG + chr4_4:79469416-79469435 None:intergenic 60.0%
TGGGCCTTCCAAGGCAACCA+GGG - chr4_4:79469416-79469435 Msa0706490:CDS 60.0%
!! TTGTGGGTGGCGGGAGAGGA+GGG + chr4_4:79467629-79467648 None:intergenic 65.0%
GCGGCTGTTGCGGTTGAGAG+TGG + chr4_4:79467683-79467702 None:intergenic 65.0%
GGTAACGTCGGCGGCTGTTG+CGG + chr4_4:79467693-79467712 None:intergenic 65.0%
GCAACAGCCGCCGACGTTAC+CGG - chr4_4:79467692-79467711 Msa0706490:three_prime_UTR 65.0%
!! TATGGCGCCGGTAACGTCGG+CGG + chr4_4:79467702-79467721 None:intergenic 65.0%
GTAAGCGGTGGCTTCGTCGC+TGG - chr4_4:79467743-79467762 Msa0706490:exon 65.0%
CGCGAACAGGCGGAGGAAGT+AGG - chr4_4:79467809-79467828 Msa0706490:CDS 65.0%
GCCGGGCTCTTTCGCCTTTC+AGG + chr4_4:79469022-79469041 None:intergenic 65.0%
AAGAGCCCGGCGCAAGATCC+GGG - chr4_4:79469031-79469050 Msa0706490:intron 65.0%
CTGGTTGCCTTGGAAGGCCC+AGG + chr4_4:79469417-79469436 None:intergenic 65.0%
CTGGGCCTTCCAAGGCAACC+AGG - chr4_4:79469415-79469434 Msa0706490:CDS 65.0%
! GGGCGTTGCACAAGGTTGGG+TGG - chr4_4:79469469-79469488 Msa0706490:CDS 65.0%
!! GTTGTGGGTGGCGGGAGAGG+AGG + chr4_4:79467630-79467649 None:intergenic 70.0%
ACGACGACGCGAACAGGCGG+AGG - chr4_4:79467802-79467821 Msa0706490:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 79467423 79469892 79467423 ID=Msa0706490;Name=Msa0706490
chr4_4 mRNA 79467423 79469892 79467423 ID=Msa0706490-mRNA-1;Parent=Msa0706490;Name=Msa0706490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=44|1|1|1|1|1|2|329|354
chr4_4 exon 79467423 79468153 79467423 ID=Msa0706490-mRNA-1:exon:25578;Parent=Msa0706490-mRNA-1
chr4_4 exon 79469186 79469892 79469186 ID=Msa0706490-mRNA-1:exon:25577;Parent=Msa0706490-mRNA-1
chr4_4 five_prime_UTR 79469849 79469892 79469849 ID=Msa0706490-mRNA-1:five_prime_utr;Parent=Msa0706490-mRNA-1
chr4_4 CDS 79469186 79469848 79469186 ID=Msa0706490-mRNA-1:cds;Parent=Msa0706490-mRNA-1
chr4_4 CDS 79467752 79468153 79467752 ID=Msa0706490-mRNA-1:cds;Parent=Msa0706490-mRNA-1
chr4_4 three_prime_UTR 79467423 79467751 79467423 ID=Msa0706490-mRNA-1:three_prime_utr;Parent=Msa0706490-mRNA-1
Gene Sequence

>Msa0706490

ATGCTATCTTATCTTTCCTGGATAACAATATCATCACTTCAACCCAACTCACACTCACACTCTCACTCAAATCAAACCAAAATGGCGTTCTCATCATCCATGTGGTCTTCTCTCTTTGTTCCAAACCCAAACAAAACTAACCGTTTCGCTACATTCTCTCCCTCCTCTCCCGCCACCCACAACAAACTCTTAACAACCACATTCGCCATCCCTCCACTCTCAACCGCAACAGCCGCCGACGTTACCGGCGCCATAGACGGCACAACAATCGCGGTCGTAAGCGGTGGCTTCGTCGCTGGCCTCACCGCACTTCTCTCCCTTTCAGACCCGGAAAGACGACGACGCGAACAGGCGGAGGAAGTAGGCGGTGATGACAAAGAAGTTGTGAGGGAGTATTTCAACAACAACGGGTTTCAACGATGGAAGAAGATTTACGGTGATACTGATGATGTTAATAGAGTTCAACGGGATATTAGGTTGGGACATTCCAAGACTGTTGAGAATGCTTTACAGATGTTGAAAGATGAAGGGCCACTTCAGGGTGTTACTATTTGTGATGCTGGTTGTGGTACTGGTTCTCTTTCGATTCCGTTGGCGAAGGAAGGTGCCGTTGTTTGTGCTAGTGATATATCAGCTGCCATGGTTGCTGAAGCTGAGAAACAGGCAAAAGAACAACTTGTGTCCAGTGAAAATGGAGTGTCACCTGCGATGCCAAAGTTTGTGGTGAGTGATTTAGAGAGTTTGGATGGATTGTACGATACAGTGGTGTGCCTCGATGTTATGATTCATTACCCTCAGAGTAAAGCAGATGGGATGATTGCTCACCTTGCTTCTTTGGCAGAAAAGCGATTGATTCTGAGCTTTGCACCTAAGACATTTTATTATGATGCACTAAAGAGGGTTGGAGAGTTGTTCCCTGGGCCTTCCAAGGCAACCAGGGCATATCTTCATTCTGAAGCAGATGTTGAAAGGGCGTTGCACAAGGTTGGGTGGACGATAAAGAAGAAAGGCTTAATCGCTACTCAATTTTACTTTGCCAAGCTTATTGAGGCTGTTCCTATGTAG

Protein sequence

>Msa0706490

MLSYLSWITISSLQPNSHSHSHSNQTKMAFSSSMWSSLFVPNPNKTNRFATFSPSSPATHNKLLTTTFAIPPLSTATAADVTGAIDGTTIAVVSGGFVAGLTALLSLSDPERRRREQAEEVGGDDKEVVREYFNNNGFQRWKKIYGDTDDVNRVQRDIRLGHSKTVENALQMLKDEGPLQGVTICDAGCGTGSLSIPLAKEGAVVCASDISAAMVAEAEKQAKEQLVSSENGVSPAMPKFVVSDLESLDGLYDTVVCLDVMIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDALKRVGELFPGPSKATRAYLHSEADVERALHKVGWTIKKKGLIATQFYFAKLIEAVPM*