AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467970 MtrunA17_Chr3g0122441 96.875 192 6 0 1 192 1 192 9.26e-136 377
Msa0467970 MtrunA17_Chr8g0356191 32.450 151 90 5 9 151 12 158 5.70e-16 72.4
Msa0467970 MtrunA17_Chr7g0260061 28.070 114 79 2 1 114 1 111 3.87e-12 62.0
Msa0467970 MtrunA17_Chr5g0395001 28.125 192 113 7 1 191 1 168 3.97e-12 61.6
Msa0467970 MtrunA17_Chr1g0205181 35.714 84 49 1 30 113 26 104 6.24e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467970 AT1G27950.1 49.020 153 71 3 31 183 34 179 1.84e-42 141
Msa0467970 AT2G44290.1 34.395 157 91 7 10 161 13 162 4.99e-18 78.6
Msa0467970 AT2G44300.1 34.615 130 72 6 42 164 45 168 1.78e-14 68.9
Msa0467970 AT1G55260.2 26.829 164 100 6 1 159 44 192 6.12e-13 65.5
Msa0467970 AT1G55260.1 26.829 164 103 6 1 159 44 195 9.94e-13 64.7

Find 86 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACCCATGCTCTTGCTTTC+AGG 0.112193 3_3:+69475526 None:intergenic
TGTAATGGTTTCTCGAATTA+TGG 0.138518 3_3:-69471333 Msa0467970:three_prime_UTR
GCATCACAGCATTCCTTCTT+TGG 0.234849 3_3:+69475619 None:intergenic
AGGAAGTAGTAAAGTATTAT+TGG 0.255709 3_3:-69471414 Msa0467970:three_prime_UTR
CCTCAATCTCACCATTAAAT+AGG 0.265782 3_3:-69475991 Msa0467970:five_prime_UTR
AATTATCACCAACATATTAA+TGG 0.276720 3_3:+69471249 None:intergenic
TGGTCTCGTTTCCTATTTAA+TGG 0.277493 3_3:+69475980 None:intergenic
TCACAATAAAGGCAAATTAA+AGG 0.315377 3_3:+69471292 None:intergenic
AAGCAAGAGCATGGGTATTC+AGG 0.320822 3_3:-69475521 Msa0467970:CDS
CCAACATATTAATGGGAAAC+TGG 0.323379 3_3:+69471257 None:intergenic
CCATGTCTGGACTTTGCAAC+TGG 0.330521 3_3:-69475655 Msa0467970:CDS
GTTTATGTGTCTGTGTGTTT+TGG 0.332428 3_3:-69475752 Msa0467970:CDS
TAAATATATGGTTGTAAGTA+AGG 0.339209 3_3:+69475861 None:intergenic
TTAATATGTTGGTGATAATT+CGG 0.339427 3_3:-69471246 Msa0467970:three_prime_UTR
CTCTAATGGAGCTGAAGATT+TGG 0.343257 3_3:-69475713 Msa0467970:CDS
AAAGTACTGTTATAAATATA+TGG 0.347676 3_3:+69475849 None:intergenic
GATGATGGATCTCTGTATTA+AGG 0.351887 3_3:+69476017 None:intergenic
TAGCAGAAGCTGTGAATTGT+AGG 0.363437 3_3:+69475816 None:intergenic
CTTGCCGAGGTCGGAGTTGT+AGG 0.376495 3_3:+69471603 None:intergenic
GTAATGGTTTCTCGAATTAT+GGG 0.376913 3_3:-69471332 Msa0467970:three_prime_UTR
AAGTAATAAGTTCACAATAA+AGG 0.379954 3_3:+69471281 None:intergenic
CTCATCATAGGTGGCTCTAA+TGG 0.381692 3_3:-69475727 Msa0467970:CDS
TTGTCTCTGCTGCTGTGTAA+TGG 0.386544 3_3:-69471348 Msa0467970:three_prime_UTR
TGTTGATCATGACAGGTCTA+AGG 0.387679 3_3:+69471562 None:intergenic
TACCCATGCTCTTGCTTTCA+GGG 0.394358 3_3:+69475527 None:intergenic
ATTATCACCAACATATTAAT+GGG 0.396469 3_3:+69471250 None:intergenic
CACCTAACCACAGAGAAATA+TGG 0.399941 3_3:-69471439 Msa0467970:three_prime_UTR
TCCTCTTTGTCTTGGAAGAA+TGG 0.400860 3_3:-69471138 Msa0467970:three_prime_UTR
ACATAAACATTTGATGTTGT+TGG 0.404273 3_3:+69475767 None:intergenic
GGTATGGTGACAGAGCTTCT+TGG 0.409463 3_3:-69471717 Msa0467970:intron
CAACGTGATAACGGTGACTT+TGG 0.415623 3_3:-69471541 Msa0467970:CDS
AAGGAGAGAATAGGAAGTAC+AGG 0.419692 3_3:+69475924 None:intergenic
CCTATTTAATGGTGAGATTG+AGG 0.420416 3_3:+69475991 None:intergenic
GTTCTTGCTGCAGTACCTGC+TGG 0.431862 3_3:-69471513 Msa0467970:CDS
TATCATTCAACAGACTCATA+AGG 0.436377 3_3:-69475554 Msa0467970:CDS
AACCATATTTCTCTGTGGTT+AGG 0.446523 3_3:+69471437 None:intergenic
TTATCAGCATTTATACATGA+TGG 0.456328 3_3:-69471488 Msa0467970:exon
CCAGTTTCCCATTAATATGT+TGG 0.459592 3_3:-69471257 Msa0467970:three_prime_UTR
ATCATTCAACAGACTCATAA+GGG 0.476714 3_3:-69475553 Msa0467970:CDS
GGTAGGAAGAAGGAGAGAAT+AGG 0.479018 3_3:+69475915 None:intergenic
GTGAGATTGAGGAGTGATGA+TGG 0.481827 3_3:+69476002 None:intergenic
CAGCATTCCTTCTTTGGTGT+AGG 0.481891 3_3:+69475625 None:intergenic
ATCACGTTGTTGATCATGAC+AGG 0.490311 3_3:+69471555 None:intergenic
AGCATTTATACATGATGGGT+TGG 0.505960 3_3:-69471483 Msa0467970:exon
TATCAGCATTTATACATGAT+GGG 0.509940 3_3:-69471487 Msa0467970:exon
AGTAGTAAAGTATTATTGGT+TGG 0.514371 3_3:-69471410 Msa0467970:three_prime_UTR
TAGGAAGTACAGGTGAGGAA+AGG 0.518986 3_3:+69475934 None:intergenic
AGAAGAAGAAGGTAGGAAGA+AGG 0.526729 3_3:+69475905 None:intergenic
GCAAATTAAAGGCAACATCA+TGG 0.529197 3_3:+69471303 None:intergenic
TCCATTCTTCCAAGACAAAG+AGG 0.533407 3_3:+69471137 None:intergenic
CCAGTTGCAAAGTCCAGACA+TGG 0.534963 3_3:+69475655 None:intergenic
CATGATCAACAACGTGATAA+CGG 0.539145 3_3:-69471550 Msa0467970:CDS
GGCTTCAAAGTGTGGATCAG+TGG 0.542878 3_3:-69475692 Msa0467970:CDS
GAAGATTTGGCTTCAAAGTG+TGG 0.543294 3_3:-69475700 Msa0467970:CDS
CATGTCTGGACTTTGCAACT+GGG 0.544788 3_3:-69475654 Msa0467970:CDS
GAAAGCACCTACACCAAAGA+AGG 0.545842 3_3:-69475632 Msa0467970:CDS
GTAGTTGCAGCAGCTGATGA+AGG 0.549439 3_3:+69471633 None:intergenic
CCACCTGTGCTTGCCGAGGT+CGG 0.550705 3_3:+69471594 None:intergenic
ACTGGGACAGTCGGAAATGT+TGG 0.550714 3_3:+69475453 None:intergenic
AACCACAGAGAAATATGGTT+AGG 0.552832 3_3:-69471434 Msa0467970:three_prime_UTR
ATGATATAGCACAAACACTC+TGG 0.553006 3_3:+69475571 None:intergenic
AACTCCTACAACTCCGACCT+CGG 0.556736 3_3:-69471607 Msa0467970:CDS
ACTCCGACCTCGGCAAGCAC+AGG 0.560509 3_3:-69471597 Msa0467970:CDS
ATCAAGTCTCAAGAAGAAGA+AGG 0.562459 3_3:+69475894 None:intergenic
ATTAAACTTACTGGGACAGT+CGG 0.571110 3_3:+69475444 None:intergenic
TAGCCCTGAAAGCAAGAGCA+TGG 0.574374 3_3:-69475530 Msa0467970:CDS
TGATGCAGCTAACAGTATCA+AGG 0.574408 3_3:-69475602 Msa0467970:CDS
CCGACCTCGGCAAGCACAGG+TGG 0.579084 3_3:-69471594 Msa0467970:CDS
CCGTTGACGTGACAAACAGT+AGG 0.581377 3_3:+69475478 None:intergenic
GCAGCAGCTGATGAAGGAGT+AGG 0.585517 3_3:+69471639 None:intergenic
AGTCTCAAGAAGAAGAAGGT+AGG 0.587932 3_3:+69475898 None:intergenic
GAGAATAGGAAGTACAGGTG+AGG 0.596929 3_3:+69475929 None:intergenic
TTTAAAGATTGCAGCGTCGG+GGG 0.597687 3_3:+69471680 None:intergenic
AGCTAACAGTATCAAGGCAA+CGG 0.604523 3_3:-69475596 Msa0467970:CDS
CTCTGTATTAAGGCACTCCA+CGG 0.608725 3_3:+69476027 None:intergenic
TAAATGCTGATAAATCCAGC+AGG 0.610193 3_3:+69471498 None:intergenic
TTCCTAACCATATTTCTCTG+TGG 0.618262 3_3:+69471432 None:intergenic
ATAAGGACGTTTAGCTACCG+TGG 0.626164 3_3:-69476044 Msa0467970:five_prime_UTR
AGCCCTGAAAGCAAGAGCAT+GGG 0.629636 3_3:-69475529 Msa0467970:CDS
GATCATGACAGGTCTAAGGT+TGG 0.632709 3_3:+69471566 None:intergenic
TGAACCACCTGTGCTTGCCG+AGG 0.642075 3_3:+69471590 None:intergenic
GGTCGGAGTTGTAGGAGTTG+CGG 0.642214 3_3:+69471611 None:intergenic
CGTTGACGTGACAAACAGTA+GGG 0.644084 3_3:+69475479 None:intergenic
AGGTACTGCAGCAAGAACAA+TGG 0.653525 3_3:+69471518 None:intergenic
CCTACTGTTTGTCACGTCAA+CGG 0.678772 3_3:-69475478 Msa0467970:CDS
GATGAGTAAATGCAATAGTG+TGG 0.690328 3_3:+69475960 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATACTATATAAAAATGT+TGG + chr3_3:69474399-69474418 None:intergenic 10.0%
!! TTTATATAGTATATAAAACA+AGG - chr3_3:69474404-69474423 Msa0467970:intron 10.0%
!! TTATATAGTATATAAAACAA+GGG - chr3_3:69474405-69474424 Msa0467970:intron 10.0%
!!! ATTTATTGAGATTTTTTTTA+TGG - chr3_3:69476017-69476036 Msa0467970:five_prime_UTR 10.0%
!!! AAAGTACTGTTATAAATATA+TGG + chr3_3:69471332-69471351 None:intergenic 15.0%
!! ATATATGACATTAATTTATC+AGG + chr3_3:69471812-69471831 None:intergenic 15.0%
!!! TTTTTTTTGTTACACAATAA+TGG - chr3_3:69471905-69471924 Msa0467970:intron 15.0%
!!! CTTATTATATTTGATTTTTC+CGG - chr3_3:69472302-69472321 Msa0467970:intron 15.0%
!! ATTTAATAAAATAAGGTTAC+TGG + chr3_3:69472415-69472434 None:intergenic 15.0%
!! AAAAATAAATGTATTTGAAC+TGG + chr3_3:69472538-69472557 None:intergenic 15.0%
!! TTTGTTTATAAGAAAAACTT+TGG + chr3_3:69472566-69472585 None:intergenic 15.0%
!!! TTTTTTGACTAAATAAAATG+TGG + chr3_3:69472714-69472733 None:intergenic 15.0%
!!! TAGAGTTTTCTAATAAATTA+TGG - chr3_3:69473636-69473655 Msa0467970:intron 15.0%
!!! AGAGTTTTCTAATAAATTAT+GGG - chr3_3:69473637-69473656 Msa0467970:intron 15.0%
!!! TAAGAAAAGATATCTTTTTT+AGG + chr3_3:69474268-69474287 None:intergenic 15.0%
!!! GAAAAGATAATTTTTAACAT+AGG - chr3_3:69474499-69474518 Msa0467970:intron 15.0%
!!! AATTTTTAACATAGGTTTTA+AGG - chr3_3:69474507-69474526 Msa0467970:intron 15.0%
!!! ATTAGTGTATAATCATTTTT+TGG - chr3_3:69474837-69474856 Msa0467970:intron 15.0%
!! AAAGAATCAAAGTATATATT+GGG + chr3_3:69474947-69474966 None:intergenic 15.0%
!! CATATATTTAACATAATGAA+AGG + chr3_3:69475056-69475075 None:intergenic 15.0%
!!! TTTGGGTTAATTTAAAAAAA+AGG - chr3_3:69475126-69475145 Msa0467970:intron 15.0%
!! TTGGGTTAATTTAAAAAAAA+GGG - chr3_3:69475127-69475146 Msa0467970:intron 15.0%
!!! AAAACGCAATATTTTTTTTT+AGG + chr3_3:69475332-69475351 None:intergenic 15.0%
!! ACATATAATAACATGAATAT+TGG - chr3_3:69475440-69475459 Msa0467970:intron 15.0%
!! TAAATATATGGTTGTAAGTA+AGG + chr3_3:69471320-69471339 None:intergenic 20.0%
!! AAGGAAAAATTAAACTTACT+GGG + chr3_3:69471745-69471764 None:intergenic 20.0%
!! AAAGGAAAAATTAAACTTAC+TGG + chr3_3:69471746-69471765 None:intergenic 20.0%
!! TAGCAATTAACGATAAAAAA+AGG + chr3_3:69471764-69471783 None:intergenic 20.0%
!! CTATTACATAAAACTATGAT+AGG - chr3_3:69471954-69471973 Msa0467970:intron 20.0%
!!! ATATCTAATTATCTCTTTTG+TGG - chr3_3:69472433-69472452 Msa0467970:intron 20.0%
!! AAAACTTATGTTAAAGTTTG+TGG - chr3_3:69473029-69473048 Msa0467970:intron 20.0%
!!! TGTAATTTTAGAAACATGAT+AGG - chr3_3:69473565-69473584 Msa0467970:intron 20.0%
!! TAATTGCGCAAAATAAATTA+AGG - chr3_3:69473599-69473618 Msa0467970:intron 20.0%
!! ATTTATTAGAAAACTCTAAC+CGG + chr3_3:69473634-69473653 None:intergenic 20.0%
!!! AAGACATAGTTTCTTTTTTT+GGG + chr3_3:69473701-69473720 None:intergenic 20.0%
!!! TTTTTGCATTGAAAATTGTA+AGG + chr3_3:69473758-69473777 None:intergenic 20.0%
!! GATTTCTGACATATAATTTA+TGG + chr3_3:69473833-69473852 None:intergenic 20.0%
!! TTAATGAGATCATTAAGTAA+AGG + chr3_3:69473953-69473972 None:intergenic 20.0%
!!! ATGGAGTATTAATTTTACAT+TGG - chr3_3:69474058-69474077 Msa0467970:intron 20.0%
!!! TAAGAAAAGATTCCTTTTTT+AGG - chr3_3:69474179-69474198 Msa0467970:intron 20.0%
!! TTATTCAATGAACCTAAAAA+AGG + chr3_3:69474194-69474213 None:intergenic 20.0%
!! TTAAGATGATAAAAGTTTGT+GGG + chr3_3:69474818-69474837 None:intergenic 20.0%
!! ATTAAGATGATAAAAGTTTG+TGG + chr3_3:69474819-69474838 None:intergenic 20.0%
!! GAAAGAATCAAAGTATATAT+TGG + chr3_3:69474948-69474967 None:intergenic 20.0%
!! AATATTCCATCAATTATTCT+TGG - chr3_3:69475103-69475122 Msa0467970:intron 20.0%
!!! CTATGATAAACTTCTAATTT+TGG + chr3_3:69475192-69475211 None:intergenic 20.0%
!! TAATAACATGAATATTGGTA+TGG - chr3_3:69475445-69475464 Msa0467970:intron 20.0%
!! AAGTAATAAGTTCACAATAA+AGG + chr3_3:69475900-69475919 None:intergenic 20.0%
!! ATTATCACCAACATATTAAT+GGG + chr3_3:69475931-69475950 None:intergenic 20.0%
!! AATTATCACCAACATATTAA+TGG + chr3_3:69475932-69475951 None:intergenic 20.0%
!!! TTAATATGTTGGTGATAATT+CGG - chr3_3:69475932-69475951 Msa0467970:five_prime_UTR 20.0%
!!! ATTCGGATTTAATTTCTTTT+TGG - chr3_3:69475949-69475968 Msa0467970:five_prime_UTR 20.0%
! ACATAAACATTTGATGTTGT+TGG + chr3_3:69471414-69471433 None:intergenic 25.0%
! ATGCATGATATTGTACATAT+TGG - chr3_3:69471830-69471849 Msa0467970:intron 25.0%
! TGCATGATATTGTACATATT+GGG - chr3_3:69471831-69471850 Msa0467970:intron 25.0%
! ACAATAATGGTTCCAATTTA+CGG - chr3_3:69471918-69471937 Msa0467970:intron 25.0%
! TAGACTTATATCACAATTTC+AGG - chr3_3:69472007-69472026 Msa0467970:intron 25.0%
! GTTTATTGCATATTTGATGT+CGG - chr3_3:69472145-69472164 Msa0467970:intron 25.0%
!! TTTTAACAAACCGTAATGTT+TGG - chr3_3:69472227-69472246 Msa0467970:intron 25.0%
! TTTAACAAACCGTAATGTTT+GGG - chr3_3:69472228-69472247 Msa0467970:intron 25.0%
!! CTCTTTTAAATAAAATCCGA+GGG + chr3_3:69472489-69472508 None:intergenic 25.0%
!! TCTCTTTTAAATAAAATCCG+AGG + chr3_3:69472490-69472509 None:intergenic 25.0%
!! GTATAGGAGTATAAACATAA+GGG + chr3_3:69472629-69472648 None:intergenic 25.0%
!! TGTATAGGAGTATAAACATA+AGG + chr3_3:69472630-69472649 None:intergenic 25.0%
!! ACTACAAATGACACTATTTT+TGG - chr3_3:69473273-69473292 Msa0467970:intron 25.0%
!!! TTGGTAGATATTTTTGTTGT+TGG - chr3_3:69473292-69473311 Msa0467970:intron 25.0%
! TTGCGATAACTATTATAGAT+GGG - chr3_3:69473317-69473336 Msa0467970:intron 25.0%
! CCTAGAAAAGAAAAGAAAAT+TGG + chr3_3:69473509-69473528 None:intergenic 25.0%
!! CCAATTTTCTTTTCTTTTCT+AGG - chr3_3:69473506-69473525 Msa0467970:intron 25.0%
!!! CAAGACATAGTTTCTTTTTT+TGG + chr3_3:69473702-69473721 None:intergenic 25.0%
! ATTGTTTAAGCATCTAAAAG+TGG + chr3_3:69473784-69473803 None:intergenic 25.0%
!! AACATTTAAGACATTGTTGT+TGG + chr3_3:69473911-69473930 None:intergenic 25.0%
!!! TCTTTTCTTATATTTGAGAC+CGG + chr3_3:69474278-69474297 None:intergenic 25.0%
!!! TCTTTTCTTATATTTGAGAC+CGG - chr3_3:69474278-69474297 Msa0467970:intron 25.0%
! ATGCTAATACATGTTAATGT+TGG + chr3_3:69474333-69474352 None:intergenic 25.0%
!! CTAATATATGCTCTAAATGT+TGG + chr3_3:69474370-69474389 None:intergenic 25.0%
!!! AAAAGCTAACTTGTGTTTTT+AGG - chr3_3:69474428-69474447 Msa0467970:intron 25.0%
!!! AAAGCTAACTTGTGTTTTTA+GGG - chr3_3:69474429-69474448 Msa0467970:intron 25.0%
! TAAGATGATAAAAGTTTGTG+GGG + chr3_3:69474817-69474836 None:intergenic 25.0%
!!! TCATGGATGATAGTTTTAAA+AGG + chr3_3:69475394-69475413 None:intergenic 25.0%
!! CAATCTTTAAAAATGCTTCA+AGG - chr3_3:69475510-69475529 Msa0467970:CDS 25.0%
! TTATCAGCATTTATACATGA+TGG - chr3_3:69475690-69475709 Msa0467970:CDS 25.0%
! TATCAGCATTTATACATGAT+GGG - chr3_3:69475691-69475710 Msa0467970:CDS 25.0%
!! AGGAAGTAGTAAAGTATTAT+TGG - chr3_3:69475764-69475783 Msa0467970:CDS 25.0%
!! AGTAGTAAAGTATTATTGGT+TGG - chr3_3:69475768-69475787 Msa0467970:CDS 25.0%
! TCACAATAAAGGCAAATTAA+AGG + chr3_3:69475889-69475908 None:intergenic 25.0%
TATCATTCAACAGACTCATA+AGG - chr3_3:69471624-69471643 Msa0467970:CDS 30.0%
ATCATTCAACAGACTCATAA+GGG - chr3_3:69471625-69471644 Msa0467970:CDS 30.0%
ATATGCATGAAACCGTAAAT+TGG + chr3_3:69471933-69471952 None:intergenic 30.0%
!! CTATCATATACGTTTGTTGT+CGG + chr3_3:69472043-69472062 None:intergenic 30.0%
TTGTTCACTAAAATTGACAC+CGG + chr3_3:69472324-69472343 None:intergenic 30.0%
! TCTAATTATCTCTTTTGTGG+TGG - chr3_3:69472436-69472455 Msa0467970:intron 30.0%
! TTTCCCTTTCTGACATTTTT+AGG - chr3_3:69472790-69472809 Msa0467970:intron 30.0%
GTTGCGATAACTATTATAGA+TGG - chr3_3:69473316-69473335 Msa0467970:intron 30.0%
TGCGATAACTATTATAGATG+GGG - chr3_3:69473318-69473337 Msa0467970:intron 30.0%
AATGACCTGTCATCTATATT+GGG - chr3_3:69473361-69473380 Msa0467970:intron 30.0%
ATTGATATGCGAACTAATGA+AGG + chr3_3:69473473-69473492 None:intergenic 30.0%
GTCAGAAATCTTATGTATAG+AGG - chr3_3:69473843-69473862 Msa0467970:intron 30.0%
TCTTATGTATAGAGGAACAA+AGG - chr3_3:69473851-69473870 Msa0467970:intron 30.0%
ATTCTCTAACATGCATTCTT+AGG + chr3_3:69474034-69474053 None:intergenic 30.0%
TGCATGTTAGAGAATTCAAA+TGG - chr3_3:69474039-69474058 Msa0467970:intron 30.0%
!!! GTGTGAGTGATTTGTTTTAT+GGG + chr3_3:69474595-69474614 None:intergenic 30.0%
!!! AGTGTGAGTGATTTGTTTTA+TGG + chr3_3:69474596-69474615 None:intergenic 30.0%
AACAAATCACTCACACTAAA+TGG - chr3_3:69474599-69474618 Msa0467970:intron 30.0%
TATAAATACCCAACTCATTC+TGG - chr3_3:69475030-69475049 Msa0467970:intron 30.0%
TCCATCAATTATTCTTGGTT+TGG - chr3_3:69475108-69475127 Msa0467970:intron 30.0%
CCATCAATTATTCTTGGTTT+GGG - chr3_3:69475109-69475128 Msa0467970:intron 30.0%
! TCTTGTTATCTTGTGTCTTA+AGG - chr3_3:69475150-69475169 Msa0467970:intron 30.0%
! CTTGTTATCTTGTGTCTTAA+GGG - chr3_3:69475151-69475170 Msa0467970:intron 30.0%
TGTCATTAGCAACTTTATCA+TGG + chr3_3:69475411-69475430 None:intergenic 30.0%
!! ATTTTTAAAGATTGCAGCGT+CGG + chr3_3:69475504-69475523 None:intergenic 30.0%
TGTAATGGTTTCTCGAATTA+TGG - chr3_3:69475845-69475864 Msa0467970:five_prime_UTR 30.0%
GTAATGGTTTCTCGAATTAT+GGG - chr3_3:69475846-69475865 Msa0467970:five_prime_UTR 30.0%
!! GATGATGGATCTCTGTATTA+AGG + chr3_3:69471164-69471183 None:intergenic 35.0%
CCTATTTAATGGTGAGATTG+AGG + chr3_3:69471190-69471209 None:intergenic 35.0%
CCTCAATCTCACCATTAAAT+AGG - chr3_3:69471187-69471206 Msa0467970:three_prime_UTR 35.0%
TGGTCTCGTTTCCTATTTAA+TGG + chr3_3:69471201-69471220 None:intergenic 35.0%
GATGAGTAAATGCAATAGTG+TGG + chr3_3:69471221-69471240 None:intergenic 35.0%
ATCAAGTCTCAAGAAGAAGA+AGG + chr3_3:69471287-69471306 None:intergenic 35.0%
! GTTTATGTGTCTGTGTGTTT+TGG - chr3_3:69471426-69471445 Msa0467970:three_prime_UTR 35.0%
TCAAAAAGTGATTCCATGTC+TGG - chr3_3:69471510-69471529 Msa0467970:CDS 35.0%
ATGATATAGCACAAACACTC+TGG + chr3_3:69471610-69471629 None:intergenic 35.0%
ATTAAACTTACTGGGACAGT+CGG + chr3_3:69471737-69471756 None:intergenic 35.0%
! TGATCGACTTAGTTAGAGTA+CGG + chr3_3:69472067-69472086 None:intergenic 35.0%
ATTATCTCTAAACACTCCCT+CGG - chr3_3:69472470-69472489 Msa0467970:intron 35.0%
ATAACTCTATGCGTGTGTAT+AGG + chr3_3:69472645-69472664 None:intergenic 35.0%
! TACAAAAGTACAGTTTGTCC+GGG + chr3_3:69472668-69472687 None:intergenic 35.0%
! CTACAAAAGTACAGTTTGTC+CGG + chr3_3:69472669-69472688 None:intergenic 35.0%
AAATGTCAGAAAGGGAAAAG+AGG + chr3_3:69472788-69472807 None:intergenic 35.0%
AGGCCTAAAAATGTCAGAAA+GGG + chr3_3:69472796-69472815 None:intergenic 35.0%
! GTTTCTGCAATTTTCACAAG+AGG + chr3_3:69472816-69472835 None:intergenic 35.0%
TGTTCTTAATCATCGACAAG+AGG + chr3_3:69472843-69472862 None:intergenic 35.0%
GAATGACCTGTCATCTATAT+TGG - chr3_3:69473360-69473379 Msa0467970:intron 35.0%
ATTTAACCTGTCTAGATGCA+AGG + chr3_3:69473426-69473445 None:intergenic 35.0%
TTGCATCTAGACAGGTTAAA+TGG - chr3_3:69473425-69473444 Msa0467970:intron 35.0%
TGCATCTAGACAGGTTAAAT+GGG - chr3_3:69473426-69473445 Msa0467970:intron 35.0%
TAAATTAAGGTCATGCTAGC+CGG - chr3_3:69473612-69473631 Msa0467970:intron 35.0%
TTCCTTAAACAATGCCCTTA+GGG + chr3_3:69473678-69473697 None:intergenic 35.0%
AATGCTAACAAGTGTCCTAA+GGG + chr3_3:69473808-69473827 None:intergenic 35.0%
AAATGCTAACAAGTGTCCTA+AGG + chr3_3:69473809-69473828 None:intergenic 35.0%
! TTCTTATATTTGAGACCGGA+GGG + chr3_3:69474282-69474301 None:intergenic 35.0%
! TTTCTTATATTTGAGACCGG+AGG + chr3_3:69474281-69474300 None:intergenic 35.0%
! TTTCTTATATTTGAGACCGG+AGG - chr3_3:69474281-69474300 Msa0467970:intron 35.0%
! TTCTTATATTTGAGACCGGA+GGG - chr3_3:69474282-69474301 Msa0467970:intron 35.0%
TATAATGCTAATACTCCCTC+CGG + chr3_3:69474300-69474319 None:intergenic 35.0%
!!! ACTTAGACTAGCTTCTTTTC+AGG + chr3_3:69474970-69474989 None:intergenic 35.0%
CCCAAACCAAGAATAATTGA+TGG + chr3_3:69475112-69475131 None:intergenic 35.0%
AATTCCTTAGCATATGTCCT+TGG - chr3_3:69475288-69475307 Msa0467970:intron 35.0%
ATTCCTTAGCATATGTCCTT+GGG - chr3_3:69475289-69475308 Msa0467970:intron 35.0%
AAATATTAACATGTGCCCCA+AGG + chr3_3:69475308-69475327 None:intergenic 35.0%
!! TTTTTAAAGATTGCAGCGTC+GGG + chr3_3:69475503-69475522 None:intergenic 35.0%
CATGATCAACAACGTGATAA+CGG - chr3_3:69475628-69475647 Msa0467970:CDS 35.0%
TAAATGCTGATAAATCCAGC+AGG + chr3_3:69475683-69475702 None:intergenic 35.0%
!! AGCATTTATACATGATGGGT+TGG - chr3_3:69475695-69475714 Msa0467970:CDS 35.0%
AACCATATTTCTCTGTGGTT+AGG + chr3_3:69475744-69475763 None:intergenic 35.0%
AACCACAGAGAAATATGGTT+AGG - chr3_3:69475744-69475763 Msa0467970:CDS 35.0%
TTCCTAACCATATTTCTCTG+TGG + chr3_3:69475749-69475768 None:intergenic 35.0%
!! CTGCATATCTGTTTTTCTGT+AGG - chr3_3:69475804-69475823 Msa0467970:five_prime_UTR 35.0%
GCAAATTAAAGGCAACATCA+TGG + chr3_3:69475878-69475897 None:intergenic 35.0%
CCAACATATTAATGGGAAAC+TGG + chr3_3:69475924-69475943 None:intergenic 35.0%
CCAGTTTCCCATTAATATGT+TGG - chr3_3:69475921-69475940 Msa0467970:five_prime_UTR 35.0%
! TTTTATGGTCCTCTTTGTCT+TGG - chr3_3:69476032-69476051 Msa0467970:five_prime_UTR 35.0%
! AAGGAGAGAATAGGAAGTAC+AGG + chr3_3:69471257-69471276 None:intergenic 40.0%
AGAAGAAGAAGGTAGGAAGA+AGG + chr3_3:69471276-69471295 None:intergenic 40.0%
AGTCTCAAGAAGAAGAAGGT+AGG + chr3_3:69471283-69471302 None:intergenic 40.0%
TAGCAGAAGCTGTGAATTGT+AGG + chr3_3:69471365-69471384 None:intergenic 40.0%
!!! TGTGTTTTGGCTCTCATCAT+AGG - chr3_3:69471439-69471458 Msa0467970:three_prime_UTR 40.0%
CTCTAATGGAGCTGAAGATT+TGG - chr3_3:69471465-69471484 Msa0467970:three_prime_UTR 40.0%
! GAAGATTTGGCTTCAAAGTG+TGG - chr3_3:69471478-69471497 Msa0467970:exon 40.0%
TGATGCAGCTAACAGTATCA+AGG - chr3_3:69471576-69471595 Msa0467970:CDS 40.0%
AGCTAACAGTATCAAGGCAA+CGG - chr3_3:69471582-69471601 Msa0467970:CDS 40.0%
TATTGTGAGAGAGGGAGAAT+AGG + chr3_3:69471870-69471889 None:intergenic 40.0%
TTCTCCCTCTCTCACAATAA+TGG - chr3_3:69471871-69471890 Msa0467970:intron 40.0%
GTGACCATTATTGTGAGAGA+GGG + chr3_3:69471878-69471897 None:intergenic 40.0%
TGTGACCATTATTGTGAGAG+AGG + chr3_3:69471879-69471898 None:intergenic 40.0%
! GATCGACTTAGTTAGAGTAC+GGG + chr3_3:69472066-69472085 None:intergenic 40.0%
CTACACAAGCCCAAACATTA+CGG + chr3_3:69472240-69472259 None:intergenic 40.0%
! ACATAAGGGAAGCTACGTTT+TGG + chr3_3:69472615-69472634 None:intergenic 40.0%
CAGAAAGGGAAAAGAGGATA+TGG + chr3_3:69472782-69472801 None:intergenic 40.0%
GAGGCCTAAAAATGTCAGAA+AGG + chr3_3:69472797-69472816 None:intergenic 40.0%
TTAATCATCGACAAGAGGCA+GGG + chr3_3:69472838-69472857 None:intergenic 40.0%
CCAACGCAAGAGAATATTGT+GGG + chr3_3:69472969-69472988 None:intergenic 40.0%
CCACAATATTCTCTTGCGTT+GGG - chr3_3:69472967-69472986 Msa0467970:intron 40.0%
TGACAGGTCATTCAAGATTG+AGG + chr3_3:69473353-69473372 None:intergenic 40.0%
ACCTGTCATCTATATTGGGT+GGG - chr3_3:69473365-69473384 Msa0467970:intron 40.0%
ATGCGAACTAATGAAGGCAA+TGG + chr3_3:69473467-69473486 None:intergenic 40.0%
GTTCCTTAAACAATGCCCTT+AGG + chr3_3:69473679-69473698 None:intergenic 40.0%
GATGCTTAAACAATGCCCTT+AGG - chr3_3:69473790-69473809 Msa0467970:intron 40.0%
TCTTTAACATGTACTCCCTC+CGG - chr3_3:69474147-69474166 Msa0467970:intron 40.0%
!!! CAGACTCAAGTTTTTTCACG+AGG - chr3_3:69474653-69474672 Msa0467970:intron 40.0%
! TCTTTCGAACGATCGTCTTT+TGG - chr3_3:69474724-69474743 Msa0467970:intron 40.0%
! CTTTCGAACGATCGTCTTTT+GGG - chr3_3:69474725-69474744 Msa0467970:intron 40.0%
ATGAAAGGCCAGAATGAGTT+GGG + chr3_3:69475041-69475060 None:intergenic 40.0%
AATGAAAGGCCAGAATGAGT+TGG + chr3_3:69475042-69475061 None:intergenic 40.0%
AGCAGCAGTAGTAGTATATG+TGG - chr3_3:69475077-69475096 Msa0467970:intron 40.0%
GCAGCAGTAGTAGTATATGT+GGG - chr3_3:69475078-69475097 Msa0467970:intron 40.0%
! TGTCTTAAGGGCACAAGTTA+AGG - chr3_3:69475163-69475182 Msa0467970:intron 40.0%
TTCCTTAGCATATGTCCTTG+GGG - chr3_3:69475290-69475309 Msa0467970:intron 40.0%
!! TTTTAAAGATTGCAGCGTCG+GGG + chr3_3:69475502-69475521 None:intergenic 40.0%
TGTTGATCATGACAGGTCTA+AGG + chr3_3:69475619-69475638 None:intergenic 40.0%
ATCACGTTGTTGATCATGAC+AGG + chr3_3:69475626-69475645 None:intergenic 40.0%
CACCTAACCACAGAGAAATA+TGG - chr3_3:69475739-69475758 Msa0467970:CDS 40.0%
TCCTCTTTGTCTTGGAAGAA+TGG - chr3_3:69476040-69476059 Msa0467970:five_prime_UTR 40.0%
TCCATTCTTCCAAGACAAAG+AGG + chr3_3:69476044-69476063 None:intergenic 40.0%
! CTCTGTATTAAGGCACTCCA+CGG + chr3_3:69471154-69471173 None:intergenic 45.0%
GTGAGATTGAGGAGTGATGA+TGG + chr3_3:69471179-69471198 None:intergenic 45.0%
! TAGGAAGTACAGGTGAGGAA+AGG + chr3_3:69471247-69471266 None:intergenic 45.0%
! GAGAATAGGAAGTACAGGTG+AGG + chr3_3:69471252-69471271 None:intergenic 45.0%
GGTAGGAAGAAGGAGAGAAT+AGG + chr3_3:69471266-69471285 None:intergenic 45.0%
!!! GTTTTGGCTCTCATCATAGG+TGG - chr3_3:69471442-69471461 Msa0467970:three_prime_UTR 45.0%
!! CTCATCATAGGTGGCTCTAA+TGG - chr3_3:69471451-69471470 Msa0467970:three_prime_UTR 45.0%
CATGTCTGGACTTTGCAACT+GGG - chr3_3:69471524-69471543 Msa0467970:CDS 45.0%
!! GAAAGCACCTACACCAAAGA+AGG - chr3_3:69471546-69471565 Msa0467970:CDS 45.0%
! CAGCATTCCTTCTTTGGTGT+AGG + chr3_3:69471556-69471575 None:intergenic 45.0%
GCATCACAGCATTCCTTCTT+TGG + chr3_3:69471562-69471581 None:intergenic 45.0%
TACCCATGCTCTTGCTTTCA+GGG + chr3_3:69471654-69471673 None:intergenic 45.0%
ATACCCATGCTCTTGCTTTC+AGG + chr3_3:69471655-69471674 None:intergenic 45.0%
! AAGCAAGAGCATGGGTATTC+AGG - chr3_3:69471657-69471676 Msa0467970:CDS 45.0%
CGTTGACGTGACAAACAGTA+GGG + chr3_3:69471702-69471721 None:intergenic 45.0%
CCTACTGTTTGTCACGTCAA+CGG - chr3_3:69471700-69471719 Msa0467970:CDS 45.0%
ACACACGCATAGAGTTATCC+CGG - chr3_3:69472647-69472666 Msa0467970:intron 45.0%
CTTAATCATCGACAAGAGGC+AGG + chr3_3:69472839-69472858 None:intergenic 45.0%
CCCACAATATTCTCTTGCGT+TGG - chr3_3:69472966-69472985 Msa0467970:intron 45.0%
CCCAACGCAAGAGAATATTG+TGG + chr3_3:69472970-69472989 None:intergenic 45.0%
CAATATTCTCTTGCGTTGGG+AGG - chr3_3:69472970-69472989 Msa0467970:intron 45.0%
GACCTGTCATCTATATTGGG+TGG - chr3_3:69473364-69473383 Msa0467970:intron 45.0%
TCCCACCCAATATAGATGAC+AGG + chr3_3:69473369-69473388 None:intergenic 45.0%
TGTCATCTATATTGGGTGGG+AGG - chr3_3:69473368-69473387 Msa0467970:intron 45.0%
TCTTGCTAACAAGTGCCCTA+AGG - chr3_3:69473660-69473679 Msa0467970:intron 45.0%
CTTGCTAACAAGTGCCCTAA+GGG - chr3_3:69473661-69473680 Msa0467970:intron 45.0%
!! TGCCCTAAGGGCATTGTTTA+AGG - chr3_3:69473673-69473692 Msa0467970:intron 45.0%
! TTTAAAGATTGCAGCGTCGG+GGG + chr3_3:69475501-69475520 None:intergenic 45.0%
! GATCATGACAGGTCTAAGGT+TGG + chr3_3:69475615-69475634 None:intergenic 45.0%
!! CAACGTGATAACGGTGACTT+TGG - chr3_3:69475637-69475656 Msa0467970:CDS 45.0%
! AGGTACTGCAGCAAGAACAA+TGG + chr3_3:69475663-69475682 None:intergenic 45.0%
TTGTCTCTGCTGCTGTGTAA+TGG - chr3_3:69475830-69475849 Msa0467970:five_prime_UTR 45.0%
!! ATTAGATATTTAATAAAATA+AGG + chr3_3:69472422-69472441 None:intergenic 5.0%
!!! TACTATTAATTTTTTTTTTT+TGG - chr3_3:69473168-69473187 Msa0467970:intron 5.0%
!!! AAATATAAAAATTTAACTTT+TGG + chr3_3:69474550-69474569 None:intergenic 5.0%
GGCTTCAAAGTGTGGATCAG+TGG - chr3_3:69471486-69471505 Msa0467970:exon 50.0%
CCAGTTGCAAAGTCCAGACA+TGG + chr3_3:69471526-69471545 None:intergenic 50.0%
CCATGTCTGGACTTTGCAAC+TGG - chr3_3:69471523-69471542 Msa0467970:CDS 50.0%
TAGCCCTGAAAGCAAGAGCA+TGG - chr3_3:69471648-69471667 Msa0467970:CDS 50.0%
! AGCCCTGAAAGCAAGAGCAT+GGG - chr3_3:69471649-69471668 Msa0467970:CDS 50.0%
CCGTTGACGTGACAAACAGT+AGG + chr3_3:69471703-69471722 None:intergenic 50.0%
ACTGGGACAGTCGGAAATGT+TGG + chr3_3:69471728-69471747 None:intergenic 50.0%
!!! AGGGAAGCTACGTTTTGGAG+AGG + chr3_3:69472610-69472629 None:intergenic 50.0%
ATTCTCTTGCGTTGGGAGGT+TGG - chr3_3:69472974-69472993 Msa0467970:intron 50.0%
TTCTCTTGCGTTGGGAGGTT+GGG - chr3_3:69472975-69472994 Msa0467970:intron 50.0%
TTGGGTGGGAGGATGAGAAT+TGG - chr3_3:69473379-69473398 Msa0467970:intron 50.0%
GGAGGATGAGAATTGGTTGC+AGG - chr3_3:69473386-69473405 Msa0467970:intron 50.0%
TGCAGACCTTGCATCTAGAC+AGG - chr3_3:69473417-69473436 Msa0467970:intron 50.0%
TGCCCCAAGGACATATGCTA+AGG + chr3_3:69475295-69475314 None:intergenic 50.0%
GGTATGGTGACAGAGCTTCT+TGG - chr3_3:69475461-69475480 Msa0467970:CDS 50.0%
GTAGTTGCAGCAGCTGATGA+AGG + chr3_3:69475548-69475567 None:intergenic 50.0%
AACTCCTACAACTCCGACCT+CGG - chr3_3:69475571-69475590 Msa0467970:CDS 50.0%
GCAGCAGCTGATGAAGGAGT+AGG + chr3_3:69475542-69475561 None:intergenic 55.0%
GGTCGGAGTTGTAGGAGTTG+CGG + chr3_3:69475570-69475589 None:intergenic 55.0%
GTTCTTGCTGCAGTACCTGC+TGG - chr3_3:69475665-69475684 Msa0467970:CDS 55.0%
CTTGCCGAGGTCGGAGTTGT+AGG + chr3_3:69475578-69475597 None:intergenic 60.0%
TGAACCACCTGTGCTTGCCG+AGG + chr3_3:69475591-69475610 None:intergenic 60.0%
ACTCCGACCTCGGCAAGCAC+AGG - chr3_3:69475581-69475600 Msa0467970:CDS 65.0%
CCACCTGTGCTTGCCGAGGT+CGG + chr3_3:69475587-69475606 None:intergenic 65.0%
CCGACCTCGGCAAGCACAGG+TGG - chr3_3:69475584-69475603 Msa0467970:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 69471135 69476065 69471135 ID=Msa0467970;Name=Msa0467970
chr3_3 mRNA 69471135 69476065 69471135 ID=Msa0467970-mRNA-1;Parent=Msa0467970;Name=Msa0467970-mRNA-1;_AED=0.03;_eAED=0.03;_QI=268|1|1|1|1|1|2|356|192
chr3_3 exon 69471135 69471726 69471135 ID=Msa0467970-mRNA-1:exon:16448;Parent=Msa0467970-mRNA-1
chr3_3 exon 69475455 69476065 69475455 ID=Msa0467970-mRNA-1:exon:16447;Parent=Msa0467970-mRNA-1
chr3_3 five_prime_UTR 69475798 69476065 69475798 ID=Msa0467970-mRNA-1:five_prime_utr;Parent=Msa0467970-mRNA-1
chr3_3 CDS 69475455 69475797 69475455 ID=Msa0467970-mRNA-1:cds;Parent=Msa0467970-mRNA-1
chr3_3 CDS 69471491 69471726 69471491 ID=Msa0467970-mRNA-1:cds;Parent=Msa0467970-mRNA-1
chr3_3 three_prime_UTR 69471135 69471490 69471135 ID=Msa0467970-mRNA-1:three_prime_utr;Parent=Msa0467970-mRNA-1
Gene Sequence

>Msa0467970

ATGAAGAACCAACAACATCAAATGTTTATGTGTCTGTGTGTTTTGGCTCTCATCATAGGTGGCTCTAATGGAGCTGAAGATTTGGCTTCAAAGTGTGGATCAGTGGTTCAAAAAGTGATTCCATGTCTGGACTTTGCAACTGGGAAAGCACCTACACCAAAGAAGGAATGCTGTGATGCAGCTAACAGTATCAAGGCAACGGATCCAGAGTGTTTGTGCTATATCATTCAACAGACTCATAAGGGTAGCCCTGAAAGCAAGAGCATGGGTATTCAGGAAGATAAGCTTCTTCAACTCCCTACTGTTTGTCACGTCAACGGCGCCAACATTTCCGACTGTCCCAAGCTTCTTGGTCTATCTGCAAACTCCCCCGACGCTGCAATCTTTAAAAATGCTTCAAGGACAAATCCTACTCCTTCATCAGCTGCTGCAACTACCGCAACTCCTACAACTCCGACCTCGGCAAGCACAGGTGGTTCATCCAACCTTAGACCTGTCATGATCAACAACGTGATAACGGTGACTTTGGCCATTGTTCTTGCTGCAGTACCTGCTGGATTTATCAGCATTTATACATGA

Protein sequence

>Msa0467970

MKNQQHQMFMCLCVLALIIGGSNGAEDLASKCGSVVQKVIPCLDFATGKAPTPKKECCDAANSIKATDPECLCYIIQQTHKGSPESKSMGIQEDKLLQLPTVCHVNGANISDCPKLLGLSANSPDAAIFKNASRTNPTPSSAAATTATPTTPTSASTGGSSNLRPVMINNVITVTLAIVLAAVPAGFISIYT*