AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1388030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1388030 MtrunA17_Chr5g0399701 71.094 128 28 3 1 126 1 121 1.20e-28 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 50 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTCATGATTGGGCTTCC+TGG 0.247172 tig0021032:-73555 None:intergenic
CTTCCTGGTGGCAGTGATAC+AGG 0.253219 tig0021032:-73540 None:intergenic
GTGATACAGGGGAGGGTGCT+TGG 0.269078 tig0021032:-73527 None:intergenic
CTCGGGCCCATGCTCATGCT+TGG 0.274606 tig0021032:-73624 None:intergenic
AATGTTACGCCTCTAGTTCT+TGG 0.281954 tig0021032:-74480 None:intergenic
TAATGTACTCTAAAGTTTCT+TGG 0.303564 tig0021032:-74445 None:intergenic
CTCATGCTTGGGCTCATGCT+CGG 0.309614 tig0021032:-73582 None:intergenic
CTCGGGCTCATGCTCATGAT+TGG 0.309691 tig0021032:-73564 None:intergenic
ATGCTACCATTATTCTTTGC+TGG 0.315901 tig0021032:+73801 Msa1388030:CDS
CTCATGCTTGGGCTCATACT+TGG 0.360267 tig0021032:-73612 None:intergenic
CTGTGAACAACCGCGTTGCT+TGG 0.369585 tig0021032:-73765 None:intergenic
TCATGCTTGGGCTCATGCTC+GGG 0.375831 tig0021032:-73581 None:intergenic
TTGCTTGGACTTGAAGCAAC+TGG 0.388265 tig0021032:-73750 None:intergenic
GAAGGTGATGGTGAGGAAGC+TGG 0.389101 tig0021032:-73702 None:intergenic
CTTGGACTCATGCTCATGCT+TGG 0.391770 tig0021032:-73594 None:intergenic
TGATACAGGGGAGGGTGCTT+GGG 0.395750 tig0021032:-73526 None:intergenic
TCGGGCCCATGCTCATGCTT+GGG 0.410770 tig0021032:-73623 None:intergenic
GGGAAAGGTGGGCTCATACT+TGG 0.429231 tig0021032:-73660 None:intergenic
TTGGACTCATGCTCATGCTT+GGG 0.445374 tig0021032:-73593 None:intergenic
CTTGGACTCATGCTCATGCT+CGG 0.451338 tig0021032:-73642 None:intergenic
GCTAGCCATGTCTCTTGCTC+TGG 0.451838 tig0021032:+73488 Msa1388030:CDS
TTCCTGGTGGCAGTGATACA+GGG 0.459768 tig0021032:-73539 None:intergenic
AGGGGAGGGTGCTTGGGCTA+TGG 0.461739 tig0021032:-73520 None:intergenic
TGAGTACCAGCAAAGAATAA+TGG 0.464671 tig0021032:-73807 None:intergenic
TCGGGCTCATGCTCATGATT+GGG 0.467264 tig0021032:-73563 None:intergenic
TTGGACTCATGCTCATGCTC+GGG 0.527157 tig0021032:-73641 None:intergenic
GGAGATGGTGAAGCAGCAGT+AGG 0.535138 tig0021032:-73681 None:intergenic
GGTGGCAGTGATACAGGGGA+GGG 0.541381 tig0021032:-73534 None:intergenic
ATTATCAGACATCGATTCTC+CGG 0.547569 tig0021032:-73727 None:intergenic
GATTCTCCGGTGGAAGGTGA+TGG 0.549766 tig0021032:-73714 None:intergenic
TATGAGCCCAAGCATGAGCA+TGG 0.552073 tig0021032:+73617 Msa1388030:CDS
TCCTGGTGGCAGTGATACAG+GGG 0.558755 tig0021032:-73538 None:intergenic
TGGTGGCAGTGATACAGGGG+AGG 0.573893 tig0021032:-73535 None:intergenic
TCCCCTGTATCACTGCCACC+AGG 0.577522 tig0021032:+73537 Msa1388030:CDS
GAAGCAGCAGTAGGGAAAGG+TGG 0.580658 tig0021032:-73672 None:intergenic
CTAAGCTTGCCAAGAACTAG+AGG 0.582509 tig0021032:+74471 Msa1388030:CDS
AAGCAGCAGTAGGGAAAGGT+GGG 0.588458 tig0021032:-73671 None:intergenic
TCCTCACCATCACCTTCCAC+CGG 0.596602 tig0021032:+73708 Msa1388030:CDS
GGTGAAGCAGCAGTAGGGAA+AGG 0.605004 tig0021032:-73675 None:intergenic
GATGGTGAGGAAGCTGGAGA+TGG 0.605949 tig0021032:-73696 None:intergenic
GAGATGGTGAAGCAGCAGTA+GGG 0.615443 tig0021032:-73680 None:intergenic
CTCATGATTGGGCTTCCTGG+TGG 0.617444 tig0021032:-73552 None:intergenic
GACATCGATTCTCCGGTGGA+AGG 0.621189 tig0021032:-73720 None:intergenic
TCCGGTGGAAGGTGATGGTG+AGG 0.623620 tig0021032:-73709 None:intergenic
ATGAGCCCAAGCATGAGCAT+GGG 0.631721 tig0021032:+73618 Msa1388030:CDS
TCAATTTCAAATGACATACA+TGG 0.639683 tig0021032:+74382 Msa1388030:CDS
TGTCACCAGAGCAAGAGACA+TGG 0.667198 tig0021032:-73493 None:intergenic
AGACATGGCTAGCATGAGTG+TGG 0.667612 tig0021032:-73478 None:intergenic
ATCAGACATCGATTCTCCGG+TGG 0.683845 tig0021032:-73724 None:intergenic
TGCTTCAAGTCCAAGCAACG+CGG 0.698866 tig0021032:+73755 Msa1388030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTAGTTGATTTTGA+TGG - tig0021032:73876-73895 None:intergenic 15.0%
!!! TAGTTTAAATTTTGAATGAT+CGG - tig0021032:73929-73948 None:intergenic 15.0%
!! AGAATATAATTTAATTACGT+AGG - tig0021032:74354-74373 None:intergenic 15.0%
!!! TATATTTTAGTTGATTTTGA+TGG - tig0021032:73876-73895 None:intergenic 15.0%
!!! TAGTTTAAATTTTGAATGAT+CGG - tig0021032:73929-73948 None:intergenic 15.0%
!! AGAATATAATTTAATTACGT+AGG - tig0021032:74354-74373 None:intergenic 15.0%
!! AACTTAGATTTCATAATCAA+CGG + tig0021032:74114-74133 Msa1388030:intron 20.0%
!!! AATAGTTTGTAACATATCAA+AGG + tig0021032:74267-74286 Msa1388030:intron 20.0%
!!! ATAGTTTGTAACATATCAAA+GGG + tig0021032:74268-74287 Msa1388030:intron 20.0%
!!! GATTCTGTTAAAATAGATTT+TGG - tig0021032:74322-74341 None:intergenic 20.0%
!!! AAATCTATTTTAACAGAATC+TGG + tig0021032:74322-74341 Msa1388030:intron 20.0%
!! AACTTAGATTTCATAATCAA+CGG + tig0021032:74114-74133 Msa1388030:intron 20.0%
!!! AATAGTTTGTAACATATCAA+AGG + tig0021032:74267-74286 Msa1388030:intron 20.0%
!!! ATAGTTTGTAACATATCAAA+GGG + tig0021032:74268-74287 Msa1388030:intron 20.0%
!!! GATTCTGTTAAAATAGATTT+TGG - tig0021032:74322-74341 None:intergenic 20.0%
!!! AAATCTATTTTAACAGAATC+TGG + tig0021032:74322-74341 Msa1388030:intron 20.0%
!!! ATTTTAGTTGATTTTGATGG+CGG - tig0021032:73873-73892 None:intergenic 25.0%
!!! AATTTTGAATGATCGGTTTT+TGG - tig0021032:73922-73941 None:intergenic 25.0%
!! ATTGATGATTTAAAGTCACT+CGG - tig0021032:74003-74022 None:intergenic 25.0%
! GTTGATTGTAATCTTATTGT+TGG - tig0021032:74247-74266 None:intergenic 25.0%
! TCAATTTCAAATGACATACA+TGG + tig0021032:74382-74401 Msa1388030:CDS 25.0%
!!! TAATGTACTCTAAAGTTTCT+TGG - tig0021032:74448-74467 None:intergenic 25.0%
!!! ATTTTAGTTGATTTTGATGG+CGG - tig0021032:73873-73892 None:intergenic 25.0%
!!! AATTTTGAATGATCGGTTTT+TGG - tig0021032:73922-73941 None:intergenic 25.0%
!! ATTGATGATTTAAAGTCACT+CGG - tig0021032:74003-74022 None:intergenic 25.0%
! GTTGATTGTAATCTTATTGT+TGG - tig0021032:74247-74266 None:intergenic 25.0%
! TCAATTTCAAATGACATACA+TGG + tig0021032:74382-74401 Msa1388030:CDS 25.0%
!!! TAATGTACTCTAAAGTTTCT+TGG - tig0021032:74448-74467 None:intergenic 25.0%
!! TTTTAGTTGATTTTGATGGC+GGG - tig0021032:73872-73891 None:intergenic 30.0%
CATGTCAATTTACATCGAAA+GGG - tig0021032:74058-74077 None:intergenic 30.0%
! TCTAAGTTGAGAAACAAGAT+GGG - tig0021032:74102-74121 None:intergenic 30.0%
! ATCTAAGTTGAGAAACAAGA+TGG - tig0021032:74103-74122 None:intergenic 30.0%
!! GAATCGATTCTATTTTCAAG+AGG - tig0021032:74144-74163 None:intergenic 30.0%
!! GTTTGATTCTTGCTGTTAAA+AGG - tig0021032:74225-74244 None:intergenic 30.0%
!! TTTTAGTTGATTTTGATGGC+GGG - tig0021032:73872-73891 None:intergenic 30.0%
CATGTCAATTTACATCGAAA+GGG - tig0021032:74058-74077 None:intergenic 30.0%
! TCTAAGTTGAGAAACAAGAT+GGG - tig0021032:74102-74121 None:intergenic 30.0%
! ATCTAAGTTGAGAAACAAGA+TGG - tig0021032:74103-74122 None:intergenic 30.0%
!! GAATCGATTCTATTTTCAAG+AGG - tig0021032:74144-74163 None:intergenic 30.0%
!! GTTTGATTCTTGCTGTTAAA+AGG - tig0021032:74225-74244 None:intergenic 30.0%
!! ATTATCAGACATCGATTCTC+CGG - tig0021032:73730-73749 None:intergenic 35.0%
ATGCTACCATTATTCTTTGC+TGG + tig0021032:73801-73820 Msa1388030:CDS 35.0%
TGAGTACCAGCAAAGAATAA+TGG - tig0021032:73810-73829 None:intergenic 35.0%
GCATGTCAATTTACATCGAA+AGG - tig0021032:74059-74078 None:intergenic 35.0%
!! CGATTCTATTTTCAAGAGGA+AGG - tig0021032:74140-74159 None:intergenic 35.0%
!! GATTCTTGCTGTTAAAAGGT+GGG - tig0021032:74221-74240 None:intergenic 35.0%
!! TGATTCTTGCTGTTAAAAGG+TGG - tig0021032:74222-74241 None:intergenic 35.0%
!! ATTATCAGACATCGATTCTC+CGG - tig0021032:73730-73749 None:intergenic 35.0%
ATGCTACCATTATTCTTTGC+TGG + tig0021032:73801-73820 Msa1388030:CDS 35.0%
TGAGTACCAGCAAAGAATAA+TGG - tig0021032:73810-73829 None:intergenic 35.0%
GCATGTCAATTTACATCGAA+AGG - tig0021032:74059-74078 None:intergenic 35.0%
!! CGATTCTATTTTCAAGAGGA+AGG - tig0021032:74140-74159 None:intergenic 35.0%
!! GATTCTTGCTGTTAAAAGGT+GGG - tig0021032:74221-74240 None:intergenic 35.0%
!! TGATTCTTGCTGTTAAAAGG+TGG - tig0021032:74222-74241 None:intergenic 35.0%
TATTCTTTGCTGGTACTCAG+TGG + tig0021032:73811-73830 Msa1388030:intron 40.0%
GGAGCCAGACAAAAATGTTT+GGG + tig0021032:73835-73854 Msa1388030:intron 40.0%
GAGCCAGACAAAAATGTTTG+GGG + tig0021032:73836-73855 Msa1388030:intron 40.0%
AAAGCGTAAAGTGCGTCTTT+AGG - tig0021032:73980-73999 None:intergenic 40.0%
TGAGAAACAAGATGGGACAT+GGG - tig0021032:74095-74114 None:intergenic 40.0%
TTGAGAAACAAGATGGGACA+TGG - tig0021032:74096-74115 None:intergenic 40.0%
ATACTATTGGAGCACACAGT+TGG - tig0021032:74190-74209 None:intergenic 40.0%
TATTCTTTGCTGGTACTCAG+TGG + tig0021032:73811-73830 Msa1388030:intron 40.0%
GGAGCCAGACAAAAATGTTT+GGG + tig0021032:73835-73854 Msa1388030:intron 40.0%
GAGCCAGACAAAAATGTTTG+GGG + tig0021032:73836-73855 Msa1388030:intron 40.0%
AAAGCGTAAAGTGCGTCTTT+AGG - tig0021032:73980-73999 None:intergenic 40.0%
TGAGAAACAAGATGGGACAT+GGG - tig0021032:74095-74114 None:intergenic 40.0%
TTGAGAAACAAGATGGGACA+TGG - tig0021032:74096-74115 None:intergenic 40.0%
ATACTATTGGAGCACACAGT+TGG - tig0021032:74190-74209 None:intergenic 40.0%
TTGGACTCATGCTCATGCTT+GGG - tig0021032:73596-73615 None:intergenic 45.0%
TTGCTTGGACTTGAAGCAAC+TGG - tig0021032:73753-73772 None:intergenic 45.0%
CGGAGCCAGACAAAAATGTT+TGG + tig0021032:73834-73853 Msa1388030:intron 45.0%
! CCACCCCAAACATTTTTGTC+TGG - tig0021032:73842-73861 None:intergenic 45.0%
CCAGACAAAAATGTTTGGGG+TGG + tig0021032:73839-73858 Msa1388030:intron 45.0%
!!! TGATTTTGATGGCGGGATGA+CGG - tig0021032:73865-73884 None:intergenic 45.0%
GTGGGCATACGACATACTAT+TGG - tig0021032:74203-74222 None:intergenic 45.0%
TTGGACTCATGCTCATGCTT+GGG - tig0021032:73596-73615 None:intergenic 45.0%
TTGCTTGGACTTGAAGCAAC+TGG - tig0021032:73753-73772 None:intergenic 45.0%
CGGAGCCAGACAAAAATGTT+TGG + tig0021032:73834-73853 Msa1388030:intron 45.0%
! CCACCCCAAACATTTTTGTC+TGG - tig0021032:73842-73861 None:intergenic 45.0%
CCAGACAAAAATGTTTGGGG+TGG + tig0021032:73839-73858 Msa1388030:intron 45.0%
!!! TGATTTTGATGGCGGGATGA+CGG - tig0021032:73865-73884 None:intergenic 45.0%
GTGGGCATACGACATACTAT+TGG - tig0021032:74203-74222 None:intergenic 45.0%
AGACATGGCTAGCATGAGTG+TGG - tig0021032:73481-73500 None:intergenic 50.0%
TGTCACCAGAGCAAGAGACA+TGG - tig0021032:73496-73515 None:intergenic 50.0%
TTCCTGGTGGCAGTGATACA+GGG - tig0021032:73542-73561 None:intergenic 50.0%
ATGCTCATGATTGGGCTTCC+TGG - tig0021032:73558-73577 None:intergenic 50.0%
TCGGGCTCATGCTCATGATT+GGG - tig0021032:73566-73585 None:intergenic 50.0%
CTTGGACTCATGCTCATGCT+TGG - tig0021032:73597-73616 None:intergenic 50.0%
CTCATGCTTGGGCTCATACT+TGG - tig0021032:73615-73634 None:intergenic 50.0%
TATGAGCCCAAGCATGAGCA+TGG + tig0021032:73617-73636 Msa1388030:CDS 50.0%
ATGAGCCCAAGCATGAGCAT+GGG + tig0021032:73588-73607 Msa1388030:CDS 50.0%
TTGGACTCATGCTCATGCTC+GGG - tig0021032:73644-73663 None:intergenic 50.0%
CTTGGACTCATGCTCATGCT+CGG - tig0021032:73597-73616 None:intergenic 50.0%
AAGCAGCAGTAGGGAAAGGT+GGG - tig0021032:73674-73693 None:intergenic 50.0%
GAGATGGTGAAGCAGCAGTA+GGG - tig0021032:73683-73702 None:intergenic 50.0%
!! ATCAGACATCGATTCTCCGG+TGG - tig0021032:73727-73746 None:intergenic 50.0%
TGCTTCAAGTCCAAGCAACG+CGG + tig0021032:73755-73774 Msa1388030:CDS 50.0%
TCTTTGCTGGTACTCAGTGG+CGG + tig0021032:73814-73833 Msa1388030:intron 50.0%
AGACATGGCTAGCATGAGTG+TGG - tig0021032:73481-73500 None:intergenic 50.0%
TGTCACCAGAGCAAGAGACA+TGG - tig0021032:73496-73515 None:intergenic 50.0%
TTCCTGGTGGCAGTGATACA+GGG - tig0021032:73542-73561 None:intergenic 50.0%
ATGCTCATGATTGGGCTTCC+TGG - tig0021032:73558-73577 None:intergenic 50.0%
TCGGGCTCATGCTCATGATT+GGG - tig0021032:73566-73585 None:intergenic 50.0%
CTTGGACTCATGCTCATGCT+TGG - tig0021032:73597-73616 None:intergenic 50.0%
CTCATGCTTGGGCTCATACT+TGG - tig0021032:73615-73634 None:intergenic 50.0%
TATGAGCCCAAGCATGAGCA+TGG + tig0021032:73617-73636 Msa1388030:CDS 50.0%
ATGAGCCCAAGCATGAGCAT+GGG + tig0021032:73588-73607 Msa1388030:CDS 50.0%
TTGGACTCATGCTCATGCTC+GGG - tig0021032:73644-73663 None:intergenic 50.0%
CTTGGACTCATGCTCATGCT+CGG - tig0021032:73597-73616 None:intergenic 50.0%
AAGCAGCAGTAGGGAAAGGT+GGG - tig0021032:73674-73693 None:intergenic 50.0%
GAGATGGTGAAGCAGCAGTA+GGG - tig0021032:73683-73702 None:intergenic 50.0%
!! ATCAGACATCGATTCTCCGG+TGG - tig0021032:73727-73746 None:intergenic 50.0%
TGCTTCAAGTCCAAGCAACG+CGG + tig0021032:73755-73774 Msa1388030:CDS 50.0%
TCTTTGCTGGTACTCAGTGG+CGG + tig0021032:73814-73833 Msa1388030:intron 50.0%
GCTAGCCATGTCTCTTGCTC+TGG + tig0021032:73488-73507 Msa1388030:CDS 55.0%
!! TGATACAGGGGAGGGTGCTT+GGG - tig0021032:73529-73548 None:intergenic 55.0%
TCCTGGTGGCAGTGATACAG+GGG - tig0021032:73541-73560 None:intergenic 55.0%
CTTCCTGGTGGCAGTGATAC+AGG - tig0021032:73543-73562 None:intergenic 55.0%
CTCATGATTGGGCTTCCTGG+TGG - tig0021032:73555-73574 None:intergenic 55.0%
CTCGGGCTCATGCTCATGAT+TGG - tig0021032:73567-73586 None:intergenic 55.0%
TCATGCTTGGGCTCATGCTC+GGG - tig0021032:73584-73603 None:intergenic 55.0%
CTCATGCTTGGGCTCATGCT+CGG - tig0021032:73585-73604 None:intergenic 55.0%
! GGGAAAGGTGGGCTCATACT+TGG - tig0021032:73663-73682 None:intergenic 55.0%
GAAGCAGCAGTAGGGAAAGG+TGG - tig0021032:73675-73694 None:intergenic 55.0%
GGTGAAGCAGCAGTAGGGAA+AGG - tig0021032:73678-73697 None:intergenic 55.0%
GGAGATGGTGAAGCAGCAGT+AGG - tig0021032:73684-73703 None:intergenic 55.0%
GATGGTGAGGAAGCTGGAGA+TGG - tig0021032:73699-73718 None:intergenic 55.0%
! GAAGGTGATGGTGAGGAAGC+TGG - tig0021032:73705-73724 None:intergenic 55.0%
TCCTCACCATCACCTTCCAC+CGG + tig0021032:73708-73727 Msa1388030:CDS 55.0%
GATTCTCCGGTGGAAGGTGA+TGG - tig0021032:73717-73736 None:intergenic 55.0%
!! GACATCGATTCTCCGGTGGA+AGG - tig0021032:73723-73742 None:intergenic 55.0%
CTGTGAACAACCGCGTTGCT+TGG - tig0021032:73768-73787 None:intergenic 55.0%
GCTAGCCATGTCTCTTGCTC+TGG + tig0021032:73488-73507 Msa1388030:CDS 55.0%
!! TGATACAGGGGAGGGTGCTT+GGG - tig0021032:73529-73548 None:intergenic 55.0%
TCCTGGTGGCAGTGATACAG+GGG - tig0021032:73541-73560 None:intergenic 55.0%
CTTCCTGGTGGCAGTGATAC+AGG - tig0021032:73543-73562 None:intergenic 55.0%
CTCATGATTGGGCTTCCTGG+TGG - tig0021032:73555-73574 None:intergenic 55.0%
CTCGGGCTCATGCTCATGAT+TGG - tig0021032:73567-73586 None:intergenic 55.0%
TCATGCTTGGGCTCATGCTC+GGG - tig0021032:73584-73603 None:intergenic 55.0%
CTCATGCTTGGGCTCATGCT+CGG - tig0021032:73585-73604 None:intergenic 55.0%
! GGGAAAGGTGGGCTCATACT+TGG - tig0021032:73663-73682 None:intergenic 55.0%
GAAGCAGCAGTAGGGAAAGG+TGG - tig0021032:73675-73694 None:intergenic 55.0%
GGTGAAGCAGCAGTAGGGAA+AGG - tig0021032:73678-73697 None:intergenic 55.0%
GGAGATGGTGAAGCAGCAGT+AGG - tig0021032:73684-73703 None:intergenic 55.0%
GATGGTGAGGAAGCTGGAGA+TGG - tig0021032:73699-73718 None:intergenic 55.0%
! GAAGGTGATGGTGAGGAAGC+TGG - tig0021032:73705-73724 None:intergenic 55.0%
TCCTCACCATCACCTTCCAC+CGG + tig0021032:73708-73727 Msa1388030:CDS 55.0%
GATTCTCCGGTGGAAGGTGA+TGG - tig0021032:73717-73736 None:intergenic 55.0%
!! GACATCGATTCTCCGGTGGA+AGG - tig0021032:73723-73742 None:intergenic 55.0%
CTGTGAACAACCGCGTTGCT+TGG - tig0021032:73768-73787 None:intergenic 55.0%
!! GTGATACAGGGGAGGGTGCT+TGG - tig0021032:73530-73549 None:intergenic 60.0%
GGTGGCAGTGATACAGGGGA+GGG - tig0021032:73537-73556 None:intergenic 60.0%
TGGTGGCAGTGATACAGGGG+AGG - tig0021032:73538-73557 None:intergenic 60.0%
TCCCCTGTATCACTGCCACC+AGG + tig0021032:73537-73556 Msa1388030:CDS 60.0%
TCGGGCCCATGCTCATGCTT+GGG - tig0021032:73626-73645 None:intergenic 60.0%
! TCCGGTGGAAGGTGATGGTG+AGG - tig0021032:73712-73731 None:intergenic 60.0%
!! GTGATACAGGGGAGGGTGCT+TGG - tig0021032:73530-73549 None:intergenic 60.0%
GGTGGCAGTGATACAGGGGA+GGG - tig0021032:73537-73556 None:intergenic 60.0%
TGGTGGCAGTGATACAGGGG+AGG - tig0021032:73538-73557 None:intergenic 60.0%
TCCCCTGTATCACTGCCACC+AGG + tig0021032:73537-73556 Msa1388030:CDS 60.0%
TCGGGCCCATGCTCATGCTT+GGG - tig0021032:73626-73645 None:intergenic 60.0%
! TCCGGTGGAAGGTGATGGTG+AGG - tig0021032:73712-73731 None:intergenic 60.0%
!! AGGGGAGGGTGCTTGGGCTA+TGG - tig0021032:73523-73542 None:intergenic 65.0%
CTCGGGCCCATGCTCATGCT+TGG - tig0021032:73627-73646 None:intergenic 65.0%
!! AGGGGAGGGTGCTTGGGCTA+TGG - tig0021032:73523-73542 None:intergenic 65.0%
CTCGGGCCCATGCTCATGCT+TGG - tig0021032:73627-73646 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0021032 gene 73462 74490 73462 ID=Msa1388030;Name=Msa1388030
tig0021032 mRNA 73462 74490 73462 ID=Msa1388030-mRNA-1;Parent=Msa1388030;Name=Msa1388030-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|0.5|1|1|2|0|157
tig0021032 exon 73462 73822 73462 ID=Msa1388030-mRNA-1:exon:10940;Parent=Msa1388030-mRNA-1
tig0021032 exon 74378 74490 74378 ID=Msa1388030-mRNA-1:exon:10941;Parent=Msa1388030-mRNA-1
tig0021032 CDS 73462 73822 73462 ID=Msa1388030-mRNA-1:cds;Parent=Msa1388030-mRNA-1
tig0021032 CDS 74378 74490 74378 ID=Msa1388030-mRNA-1:cds;Parent=Msa1388030-mRNA-1
Gene Sequence

>Msa1388030

ATGGCACTCACACGTGCCACACTCATGCTAGCCATGTCTCTTGCTCTGGTGACATTGTCCATAGCCCAAGCACCCTCCCCTGTATCACTGCCACCAGGAAGCCCAATCATGAGCATGAGCCCGAGCATGAGCCCAAGCATGAGCATGAGTCCAAGTATGAGCCCAAGCATGAGCATGGGCCCGAGCATGAGCATGAGTCCAAGTATGAGCCCACCTTTCCCTACTGCTGCTTCACCATCTCCAGCTTCCTCACCATCACCTTCCACCGGAGAATCGATGTCTGATAATCCAGTTGCTTCAAGTCCAAGCAACGCGGTTGTTCACAGAAGCAGTGTTTTCATGCTACCATTATTCTTTGCTGATGCTCAATTTCAAATGACATACATGGTGTTTCAGCAGACTTCTATGCAAAAGTTTCACATCTACTACCAAGAAACTTTAGAGTACATTACTTCTAAGCTTGCCAAGAACTAG

Protein sequence

>Msa1388030

MALTRATLMLAMSLALVTLSIAQAPSPVSLPPGSPIMSMSPSMSPSMSMSPSMSPSMSMGPSMSMSPSMSPPFPTAASPSPASSPSPSTGESMSDNPVASSPSNAVVHRSSVFMLPLFFADAQFQMTYMVFQQTSMQKFHIYYQETLEYITSKLAKN*