AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0825570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0825570 MtrunA17_Chr5g0447531 99.623 265 1 0 1 265 1 265 0.0 540
Msa0825570 MtrunA17_Chr4g0051941 82.500 240 38 1 30 265 27 266 5.13e-149 417
Msa0825570 MtrunA17_Chr6g0453151 82.083 240 40 2 29 265 93 332 4.47e-148 417
Msa0825570 MtrunA17_Chr6g0453141 82.500 240 39 2 29 265 26 265 3.29e-147 412
Msa0825570 MtrunA17_Chr6g0453181 75.281 267 58 3 2 265 4 265 4.46e-145 407
Msa0825570 MtrunA17_Chr6g0453161 75.373 268 60 3 1 265 268 532 2.09e-143 412
Msa0825570 MtrunA17_Chr6g0453161 83.404 235 36 2 34 265 33 267 1.39e-142 410
Msa0825570 MtrunA17_Chr2g0318521 70.076 264 66 6 5 265 11 264 2.55e-124 354
Msa0825570 MtrunA17_Chr6g0464511 67.234 235 41 2 31 265 14 212 2.28e-107 309
Msa0825570 MtrunA17_Chr6g0476641 54.067 209 87 4 49 253 71 274 2.79e-62 197
Msa0825570 MtrunA17_Chr1g0157481 45.817 251 118 7 17 253 76 322 5.21e-62 198
Msa0825570 MtrunA17_Chr6g0453171 82.653 98 17 0 168 265 1 98 1.17e-54 171
Msa0825570 MtrunA17_Chr5g0448421 42.857 217 89 10 62 253 63 269 4.04e-37 132
Msa0825570 MtrunA17_Chr5g0448411 41.935 217 91 9 62 253 61 267 1.81e-36 130
Msa0825570 MtrunA17_Chr3g0133901 41.146 192 99 4 66 249 68 253 5.19e-36 129
Msa0825570 MtrunA17_Chr8g0345631 37.069 232 107 9 34 249 48 256 6.64e-36 129
Msa0825570 MtrunA17_Chr6g0462031 39.655 232 102 9 27 253 35 233 1.66e-35 127
Msa0825570 MtrunA17_Chr2g0301081 36.444 225 109 9 52 260 60 266 1.01e-31 117
Msa0825570 MtrunA17_Chr3g0092091 34.826 201 97 6 66 252 63 243 8.30e-28 107
Msa0825570 MtrunA17_Chr4g0006181 42.593 162 72 7 93 250 192 336 3.09e-25 102
Msa0825570 MtrunA17_Chr3g0113311 44.371 151 63 8 93 239 137 270 6.97e-21 89.4
Msa0825570 MtrunA17_Chr2g0279001 32.850 207 89 7 66 242 73 259 1.22e-17 80.1
Msa0825570 MtrunA17_Chr2g0296081 48.438 64 29 1 189 252 36 95 1.89e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0825570 AT2G05100.1 86.792 265 35 0 1 265 1 265 2.85e-176 486
Msa0825570 AT2G05070.1 86.038 265 37 0 1 265 1 265 2.42e-175 484
Msa0825570 AT3G27690.2 85.714 266 37 1 1 265 33 298 1.27e-173 481
Msa0825570 AT3G27690.1 85.714 266 37 1 1 265 1 266 2.35e-173 479
Msa0825570 AT2G05100.2 86.920 237 31 0 1 237 1 237 7.44e-153 429
Msa0825570 AT2G34420.1 75.746 268 55 3 2 265 4 265 5.21e-144 404
Msa0825570 AT1G29920.1 76.119 268 56 3 2 265 4 267 6.17e-144 404
Msa0825570 AT1G29910.1 76.119 268 56 3 2 265 4 267 6.17e-144 404
Msa0825570 AT1G29930.1 75.836 269 55 4 2 265 4 267 1.01e-143 404
Msa0825570 AT2G34430.1 76.119 268 55 5 2 265 4 266 7.57e-143 402
Msa0825570 AT5G54270.1 67.293 266 75 6 2 264 8 264 3.05e-121 347
Msa0825570 AT1G76570.1 44.776 268 129 7 2 256 62 323 2.77e-62 199
Msa0825570 AT4G10340.1 52.632 209 90 5 49 253 62 265 1.82e-57 185
Msa0825570 AT1G45474.2 41.969 193 97 4 66 249 56 242 5.46e-38 134
Msa0825570 AT1G45474.1 41.969 193 97 4 66 249 56 242 5.46e-38 134
Msa0825570 AT1G61520.3 40.486 247 107 12 32 253 34 265 6.94e-38 134
Msa0825570 AT1G61520.1 40.486 247 107 12 32 253 34 265 6.94e-38 134
Msa0825570 AT3G54890.1 43.367 196 91 6 63 253 52 232 1.03e-36 130
Msa0825570 AT3G61470.1 39.024 205 109 6 52 249 50 245 4.00e-36 129
Msa0825570 AT1G61520.2 42.308 208 85 10 72 254 14 211 1.86e-33 121
Msa0825570 AT1G19150.1 34.222 225 114 7 52 260 63 269 1.57e-29 112
Msa0825570 AT3G47470.1 38.342 193 101 6 66 252 64 244 2.32e-28 108
Msa0825570 AT3G08940.2 34.201 269 107 12 33 250 27 276 3.26e-26 104
Msa0825570 AT3G54890.4 41.875 160 74 5 63 218 52 196 3.89e-25 99.8
Msa0825570 AT5G01530.1 41.212 165 76 7 93 253 135 282 4.90e-25 101
Msa0825570 AT2G40100.1 43.137 153 67 7 93 242 136 271 7.24e-23 95.1
Msa0825570 AT3G54890.2 35.233 193 77 5 63 253 52 198 2.06e-22 92.4
Msa0825570 AT1G15820.1 30.916 262 123 9 15 242 19 256 5.45e-18 81.3
Msa0825570 AT5G28450.1 52.941 68 30 2 184 249 94 161 4.97e-14 68.9
Msa0825570 AT3G54890.3 43.182 88 42 2 63 149 52 132 2.21e-11 61.2

Find 136 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTTCCTTGCAAAGGTTTC+AGG 0.102826 5_3:-65471363 None:intergenic
AGAGGGTGGCCTTGACTATT+TGG 0.205421 5_3:+65471518 Msa0825570:CDS
CATGAGTTCAGAATATTTAT+TGG 0.223691 5_3:+65472065 Msa0825570:three_prime_UTR
TAAAATCATCAACTACTTAA+AGG 0.232276 5_3:+65472194 Msa0825570:three_prime_UTR
CGGTGAGGCTGTGTGGTTTA+AGG 0.263630 5_3:+65471476 Msa0825570:CDS
TTTGTTCAAGCCATTGTTAC+TGG 0.264682 5_3:+65471783 Msa0825570:CDS
GCACAAGAGTTGACATTTCT+TGG 0.265825 5_3:-65472043 None:intergenic
CTCAGAGCATTCTTGCAATC+TGG 0.295339 5_3:+65471562 Msa0825570:CDS
ATGAGGGCGTTGAGGTTTCT+TGG 0.298444 5_3:-65470759 None:intergenic
CTCTGAGCATGGATCAGGTT+TGG 0.324151 5_3:-65471546 None:intergenic
GTCTTGGCGTTCTCATTGTC+CGG 0.330962 5_3:-65471889 None:intergenic
GAGGGTGGCCTTGACTATTT+GGG 0.336583 5_3:+65471519 Msa0825570:CDS
GGTCTTAAAACTTTGTTGTC+TGG 0.337060 5_3:-65472160 None:intergenic
TTGGCTATGTTCTCCATGTT+TGG 0.341425 5_3:+65471756 Msa0825570:CDS
TTCAACTCTGCGAATGCATC+AGG 0.344835 5_3:-65471708 None:intergenic
GTAGTTACATTGGTGAAAAT+AGG 0.354237 5_3:-65471970 None:intergenic
CCCTGACCGTCCCAAGTACT+TGG 0.361481 5_3:+65471254 Msa0825570:CDS
TTGTTTCAAACCAGTCTTGC+CGG 0.363409 5_3:-65470814 None:intergenic
ATGAGTTCAGAATATTTATT+GGG 0.365072 5_3:+65472066 Msa0825570:three_prime_UTR
GGTGAGTTTCCTGGTGACTA+TGG 0.365981 5_3:+65471312 Msa0825570:CDS
CCGTTCTTCTCAAGGATCTC+AGG 0.374661 5_3:-65471444 None:intergenic
TAACATAAAATAAGAGGTAT+AGG 0.381999 5_3:-65472126 None:intergenic
TACTTGACTGGTGAGTTTCC+TGG 0.393901 5_3:+65471303 Msa0825570:CDS
GCCCATGCGTTGTTGGCGAC+AGG 0.394359 5_3:-65471846 None:intergenic
GGCTACACAGGTTGTGCTCA+TGG 0.400913 5_3:+65471584 Msa0825570:CDS
CACAAGAGTTGACATTTCTT+GGG 0.402979 5_3:-65472042 None:intergenic
CCCAAGTACTTGGGACGGTC+AGG 0.404268 5_3:-65471255 None:intergenic
TCTGAGCATGGATCAGGTTT+GGG 0.410646 5_3:-65471545 None:intergenic
GAGAAGAACGGTGTTAAATT+CGG 0.410939 5_3:+65471456 Msa0825570:CDS
TCTTGGCGTTCTCATTGTCC+GGG 0.416065 5_3:-65471888 None:intergenic
TGGTCGTAAAGGTTCTGAAC+AGG 0.417502 5_3:-65471813 None:intergenic
TGCCGGTGAATGCTGATTGT+TGG 0.417954 5_3:-65470797 None:intergenic
TGGGCTATGCTTGGTGCATT+GGG 0.418579 5_3:+65471411 Msa0825570:CDS
GGTGGTGCCTTTGACCCTCT+TGG 0.419230 5_3:+65471672 Msa0825570:CDS
AGCATATGCCCATGCGTTGT+TGG 0.419884 5_3:-65471853 None:intergenic
GTGCTCATGGGATTTGTTGA+AGG 0.427865 5_3:+65471597 Msa0825570:CDS
ATGGGCTATGCTTGGTGCAT+TGG 0.428620 5_3:+65471410 Msa0825570:CDS
ACTAATTAACATAAAATAAG+AGG 0.435132 5_3:-65472132 None:intergenic
AACAAGGAAATGAGTTCATC+AGG 0.436049 5_3:+65470832 Msa0825570:CDS
AGAGTGCTCCTGAGAGCATT+TGG 0.436155 5_3:+65470904 Msa0825570:CDS
ATCAGGAAAGCTGGTAACTT+TGG 0.441484 5_3:+65470849 Msa0825570:CDS
TGATGCATTCGCAGAGTTGA+AGG 0.448661 5_3:+65471710 Msa0825570:CDS
AGAGAATGGACCCAAGTACT+TGG 0.454278 5_3:-65471265 None:intergenic
GAATGCTCTGAGCATGGATC+AGG 0.464537 5_3:-65471551 None:intergenic
AAAATAAGAGGTATAGGTTA+CGG 0.467392 5_3:-65472120 None:intergenic
TTCTGCTTGTGTAGTTACAT+TGG 0.473050 5_3:-65471980 None:intergenic
TCAGAGCATTCTTGCAATCT+GGG 0.473136 5_3:+65471563 Msa0825570:CDS
ACCCTGTCGCCAACAACGCA+TGG 0.473833 5_3:+65471844 Msa0825570:CDS
TCAGCATTCACCGGCAAGAC+TGG 0.481069 5_3:+65470804 Msa0825570:CDS
TTGAAGTAATTCACAGCAGA+TGG 0.482906 5_3:+65471391 Msa0825570:CDS
AAGGCACCACCAGGGTATAG+TGG 0.492859 5_3:-65471660 None:intergenic
GTTGAAGGCTACAGAGTTGG+TGG 0.494755 5_3:+65471612 Msa0825570:CDS
CACAGCAGATGGGCTATGCT+TGG 0.495212 5_3:+65471402 Msa0825570:CDS
AACTCACCAGTCAAGTATGA+TGG 0.498383 5_3:-65471297 None:intergenic
AGTTTCCTGGTGACTATGGA+TGG 0.502040 5_3:+65471316 Msa0825570:CDS
CTCAAGAGGCCACCATGTCT+TGG 0.502591 5_3:-65471905 None:intergenic
GATGGAATTTGCTCAGAGAA+TGG 0.503528 5_3:-65471279 None:intergenic
CAAGCCATTGTTACTGGCAA+GGG 0.504441 5_3:+65471789 Msa0825570:CDS
AAGCTCACGGTTCCTTGCAA+AGG 0.505875 5_3:-65471370 None:intergenic
AATGAGTTCATCAGGAAAGC+TGG 0.507285 5_3:+65470840 Msa0825570:CDS
ATTTAACACCGTTCTTCTCA+AGG 0.517683 5_3:-65471452 None:intergenic
GAATGAGTTTGCACACAAAA+CGG 0.519083 5_3:+65472244 Msa0825570:three_prime_UTR
GCTACACAGGTTGTGCTCAT+GGG 0.523866 5_3:+65471585 Msa0825570:CDS
AGCAGAAGATTCAGCTCAAG+AGG 0.525912 5_3:-65471919 None:intergenic
GACTATGGATGGGACACAGC+TGG 0.528763 5_3:+65471327 Msa0825570:CDS
GGTCAGCAACATGGTCGTAA+AGG 0.529520 5_3:-65471824 None:intergenic
CCCATGCGTTGTTGGCGACA+GGG 0.536409 5_3:-65471845 None:intergenic
ACTACTTACCAAATGCTCTC+AGG 0.536679 5_3:-65470912 None:intergenic
CCCTGTCGCCAACAACGCAT+GGG 0.536908 5_3:+65471845 Msa0825570:CDS
AGCAAGACCAAGAGGGTCAA+AGG 0.536924 5_3:-65471679 None:intergenic
TGCACACAAAACGGTAAGAA+TGG 0.538835 5_3:+65472253 Msa0825570:three_prime_UTR
TCAAGCCATTGTTACTGGCA+AGG 0.539300 5_3:+65471788 Msa0825570:CDS
CAAATTCCATCATACTTGAC+TGG 0.540774 5_3:+65471291 Msa0825570:CDS
CGTTCTTCTCAAGGATCTCA+GGG 0.541586 5_3:-65471443 None:intergenic
AGAGGGTCAAAGGCACCACC+AGG 0.542069 5_3:-65471669 None:intergenic
GAATGGTGTTCAGATCAATC+AGG 0.543550 5_3:+65472270 Msa0825570:three_prime_UTR
GCCCAGATCTTCTCAGAGGG+TGG 0.543898 5_3:+65471504 Msa0825570:CDS
TTTGTTGAAGGCTACAGAGT+TGG 0.545933 5_3:+65471609 Msa0825570:CDS
TCTTGCAATCTGGGCTACAC+AGG 0.546344 5_3:+65471572 Msa0825570:CDS
CCTGACCGTCCCAAGTACTT+GGG 0.552290 5_3:+65471255 Msa0825570:CDS
AGAGTTGGTGGAGGACCACT+TGG 0.559575 5_3:+65471624 Msa0825570:CDS
GATTGCAGAGGTGGCCATGA+GGG 0.561616 5_3:-65470775 None:intergenic
GGAACTCAAGAACGGCCGAT+TGG 0.563130 5_3:+65471737 Msa0825570:CDS
GAGGCTGTGTGGTTTAAGGC+TGG 0.563162 5_3:+65471480 Msa0825570:CDS
GGTGCCCAGATCTTCTCAGA+GGG 0.564509 5_3:+65471501 Msa0825570:CDS
AGGTGGCCATGAGGGCGTTG+AGG 0.567837 5_3:-65470767 None:intergenic
ACATATAATCAGCCACAGAC+AGG 0.568395 5_3:-65472006 None:intergenic
TTGCAAGAATGCTCTGAGCA+TGG 0.570179 5_3:-65471557 None:intergenic
GCCACCCTCTGAGAAGATCT+GGG 0.573456 5_3:-65471505 None:intergenic
ATCCAACAATCAGCATTCAC+CGG 0.576154 5_3:+65470795 Msa0825570:CDS
ACATGGAGAACATAGCCAAT+CGG 0.576833 5_3:-65471752 None:intergenic
GGCAAGACTGGTTTGAAACA+AGG 0.588152 5_3:+65470816 Msa0825570:CDS
GTGGTAGGTAACAATGCACC+TGG 0.589809 5_3:+65472292 Msa0825570:three_prime_UTR
AGGCACCACCAGGGTATAGT+GGG 0.590141 5_3:-65471659 None:intergenic
CCTGAGATCCTTGAGAAGAA+CGG 0.593147 5_3:+65471444 Msa0825570:CDS
TGATTGTTGGATTGCAGAGG+TGG 0.593510 5_3:-65470784 None:intergenic
TGGCGACAGGGTCAGCAACA+TGG 0.597357 5_3:-65471833 None:intergenic
AGGGCCCTTGCCAGTAACAA+TGG 0.597695 5_3:-65471793 None:intergenic
CCAAGTACTTGGGACGGTCA+GGG 0.599166 5_3:-65471254 None:intergenic
GAGAATGGACCCAAGTACTT+GGG 0.599574 5_3:-65471264 None:intergenic
GTTCAGATCAATCAGGTGGT+AGG 0.604514 5_3:+65472277 Msa0825570:three_prime_UTR
TTGGGTTGCCCAAATAGTCA+AGG 0.608462 5_3:-65471527 None:intergenic
TGAAGTAATTCACAGCAGAT+GGG 0.611387 5_3:+65471392 Msa0825570:CDS
GTGTCCCATCCATAGTCACC+AGG 0.613151 5_3:-65471321 None:intergenic
CTGATTATATGTTAGAAATG+TGG 0.614343 5_3:+65472017 Msa0825570:three_prime_UTR
CTGATCCTGAAACCTTTGCA+AGG 0.615014 5_3:+65471358 Msa0825570:CDS
TGGTGCCCAGATCTTCTCAG+AGG 0.616548 5_3:+65471500 Msa0825570:CDS
TATGCTACTAACTTCGTCCC+CGG 0.620877 5_3:+65471870 Msa0825570:CDS
GGTGGAGGACCACTTGGTGA+AGG 0.624859 5_3:+65471630 Msa0825570:CDS
ACAATGAGAACGCCAAGACA+TGG 0.625601 5_3:+65471893 Msa0825570:exon
GGGTCTAGTCCTTCACCAAG+TGG 0.625944 5_3:-65471639 None:intergenic
TCAACTCTGCGAATGCATCA+GGG 0.627212 5_3:-65471707 None:intergenic
GGGTCATCAGCAAGACCAAG+AGG 0.629020 5_3:-65471687 None:intergenic
GGTCGTAAAGGTTCTGAACA+GGG 0.631913 5_3:-65471812 None:intergenic
ACTCTTCACAGTACGACGCA+TGG 0.636134 5_3:-65470886 None:intergenic
CTTCTCAAGGATCTCAGGGA+AGG 0.637864 5_3:-65471439 None:intergenic
TGCTGATTGTTGGATTGCAG+AGG 0.642666 5_3:-65470787 None:intergenic
ATTCGCAGAGTTGAAGGTCA+AGG 0.644022 5_3:+65471716 Msa0825570:CDS
AAGGTCAAGGAACTCAAGAA+CGG 0.645041 5_3:+65471729 Msa0825570:CDS
TGTGAATTACTTCAAGCTCA+CGG 0.646318 5_3:-65471383 None:intergenic
GAAGGCTACAGAGTTGGTGG+AGG 0.651701 5_3:+65471615 Msa0825570:CDS
CTTGGCGTTCTCATTGTCCG+GGG 0.655135 5_3:-65471887 None:intergenic
TTAAATTCGGTGAGGCTGTG+TGG 0.662485 5_3:+65471469 Msa0825570:CDS
ATGGACCCAAGTACTTGGGA+CGG 0.662771 5_3:-65471260 None:intergenic
AAGAAACCTCAACGCCCTCA+TGG 0.666321 5_3:+65470761 Msa0825570:exon
GGATTGCAGAGGTGGCCATG+AGG 0.667634 5_3:-65470776 None:intergenic
GGACTAGACCCACTATACCC+TGG 0.675418 5_3:+65471651 Msa0825570:CDS
GGTCATCAGCAAGACCAAGA+GGG 0.676366 5_3:-65471686 None:intergenic
TGGTGTTCAGATCAATCAGG+TGG 0.687250 5_3:+65472273 Msa0825570:three_prime_UTR
CAAGCAGAAGAACCTGTCTG+TGG 0.691612 5_3:+65471994 Msa0825570:three_prime_UTR
GTTTCCTGGTGACTATGGAT+GGG 0.694385 5_3:+65471317 Msa0825570:CDS
ATGAGAACGCCAAGACATGG+TGG 0.713145 5_3:+65471896 Msa0825570:exon
GAACGGTGTTAAATTCGGTG+AGG 0.717704 5_3:+65471461 Msa0825570:CDS
GAGGGTCAAAGGCACCACCA+GGG 0.717882 5_3:-65471668 None:intergenic
TTGAACAAAGAAACCAAACA+TGG 0.730913 5_3:-65471769 None:intergenic
CTAGACCCACTATACCCTGG+TGG 0.775578 5_3:+65471654 Msa0825570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAATTAACATAAAATAAG+AGG - chr5_3:65472135-65472154 None:intergenic 15.0%
!! ACTAATTAACATAAAATAAG+AGG - chr5_3:65472135-65472154 None:intergenic 15.0%
!! ATCAAATGTTAATAACTAAC+TGG + chr5_3:65471088-65471107 Msa0825570:intron 20.0%
!!! TTGTTTTCATATATTTGACT+TGG + chr5_3:65471203-65471222 Msa0825570:intron 20.0%
!! ATGAGTTCAGAATATTTATT+GGG + chr5_3:65472066-65472085 Msa0825570:three_prime_UTR 20.0%
!!! TAACATAAAATAAGAGGTAT+AGG - chr5_3:65472129-65472148 None:intergenic 20.0%
!!! GTAGTTGATGATTTTATTTT+TGG - chr5_3:65472190-65472209 None:intergenic 20.0%
!! TAAAATCATCAACTACTTAA+AGG + chr5_3:65472194-65472213 Msa0825570:three_prime_UTR 20.0%
!! ATCAAATGTTAATAACTAAC+TGG + chr5_3:65471088-65471107 Msa0825570:intron 20.0%
!!! TTGTTTTCATATATTTGACT+TGG + chr5_3:65471203-65471222 Msa0825570:intron 20.0%
!! ATGAGTTCAGAATATTTATT+GGG + chr5_3:65472066-65472085 Msa0825570:three_prime_UTR 20.0%
!!! TAACATAAAATAAGAGGTAT+AGG - chr5_3:65472129-65472148 None:intergenic 20.0%
!!! GTAGTTGATGATTTTATTTT+TGG - chr5_3:65472190-65472209 None:intergenic 20.0%
!! TAAAATCATCAACTACTTAA+AGG + chr5_3:65472194-65472213 Msa0825570:three_prime_UTR 20.0%
!! ATGTGCTAATATTTGAAGTA+AGG + chr5_3:65471170-65471189 Msa0825570:intron 25.0%
! CTGATTATATGTTAGAAATG+TGG + chr5_3:65472017-65472036 Msa0825570:three_prime_UTR 25.0%
! CATGAGTTCAGAATATTTAT+TGG + chr5_3:65472065-65472084 Msa0825570:three_prime_UTR 25.0%
!! AAAATAAGAGGTATAGGTTA+CGG - chr5_3:65472123-65472142 None:intergenic 25.0%
!!! GATGATTTTATTTTTGGCTT+AGG - chr5_3:65472184-65472203 None:intergenic 25.0%
!! ATGTGCTAATATTTGAAGTA+AGG + chr5_3:65471170-65471189 Msa0825570:intron 25.0%
! CTGATTATATGTTAGAAATG+TGG + chr5_3:65472017-65472036 Msa0825570:three_prime_UTR 25.0%
! CATGAGTTCAGAATATTTAT+TGG + chr5_3:65472065-65472084 Msa0825570:three_prime_UTR 25.0%
!! AAAATAAGAGGTATAGGTTA+CGG - chr5_3:65472123-65472142 None:intergenic 25.0%
!!! GATGATTTTATTTTTGGCTT+AGG - chr5_3:65472184-65472203 None:intergenic 25.0%
!!! TATGATCTGTTTTGAAAACC+AGG + chr5_3:65471226-65471245 Msa0825570:intron 30.0%
TTGAACAAAGAAACCAAACA+TGG - chr5_3:65471772-65471791 None:intergenic 30.0%
GTAGTTACATTGGTGAAAAT+AGG - chr5_3:65471973-65471992 None:intergenic 30.0%
!!! ACTTCTCATTTTTTACATCC+AGG - chr5_3:65472313-65472332 None:intergenic 30.0%
!!! TATGATCTGTTTTGAAAACC+AGG + chr5_3:65471226-65471245 Msa0825570:intron 30.0%
TTGAACAAAGAAACCAAACA+TGG - chr5_3:65471772-65471791 None:intergenic 30.0%
GTAGTTACATTGGTGAAAAT+AGG - chr5_3:65471973-65471992 None:intergenic 30.0%
!!! ACTTCTCATTTTTTACATCC+AGG - chr5_3:65472313-65472332 None:intergenic 30.0%
AACAAGGAAATGAGTTCATC+AGG + chr5_3:65470832-65470851 Msa0825570:CDS 35.0%
CAAGAGTCATGATGAGATAA+AGG - chr5_3:65470991-65471010 None:intergenic 35.0%
!!! CCTGCGTAATTTTAGCTTTT+GGG - chr5_3:65471050-65471069 None:intergenic 35.0%
!!! ACCTGCGTAATTTTAGCTTT+TGG - chr5_3:65471051-65471070 None:intergenic 35.0%
!!! TCTGTTTTGAAAACCAGGTA+TGG + chr5_3:65471231-65471250 Msa0825570:intron 35.0%
CAAATTCCATCATACTTGAC+TGG + chr5_3:65471291-65471310 Msa0825570:CDS 35.0%
TGTGAATTACTTCAAGCTCA+CGG - chr5_3:65471386-65471405 None:intergenic 35.0%
TTGAAGTAATTCACAGCAGA+TGG + chr5_3:65471391-65471410 Msa0825570:CDS 35.0%
TGAAGTAATTCACAGCAGAT+GGG + chr5_3:65471392-65471411 Msa0825570:CDS 35.0%
ATTTAACACCGTTCTTCTCA+AGG - chr5_3:65471455-65471474 None:intergenic 35.0%
! GAGAAGAACGGTGTTAAATT+CGG + chr5_3:65471456-65471475 Msa0825570:CDS 35.0%
TTTGTTCAAGCCATTGTTAC+TGG + chr5_3:65471783-65471802 Msa0825570:CDS 35.0%
TTCTGCTTGTGTAGTTACAT+TGG - chr5_3:65471983-65472002 None:intergenic 35.0%
CACAAGAGTTGACATTTCTT+GGG - chr5_3:65472045-65472064 None:intergenic 35.0%
! GGTCTTAAAACTTTGTTGTC+TGG - chr5_3:65472163-65472182 None:intergenic 35.0%
GAATGAGTTTGCACACAAAA+CGG + chr5_3:65472244-65472263 Msa0825570:three_prime_UTR 35.0%
AACAAGGAAATGAGTTCATC+AGG + chr5_3:65470832-65470851 Msa0825570:CDS 35.0%
CAAGAGTCATGATGAGATAA+AGG - chr5_3:65470991-65471010 None:intergenic 35.0%
!!! CCTGCGTAATTTTAGCTTTT+GGG - chr5_3:65471050-65471069 None:intergenic 35.0%
!!! ACCTGCGTAATTTTAGCTTT+TGG - chr5_3:65471051-65471070 None:intergenic 35.0%
!!! TCTGTTTTGAAAACCAGGTA+TGG + chr5_3:65471231-65471250 Msa0825570:intron 35.0%
CAAATTCCATCATACTTGAC+TGG + chr5_3:65471291-65471310 Msa0825570:CDS 35.0%
TGTGAATTACTTCAAGCTCA+CGG - chr5_3:65471386-65471405 None:intergenic 35.0%
TTGAAGTAATTCACAGCAGA+TGG + chr5_3:65471391-65471410 Msa0825570:CDS 35.0%
TGAAGTAATTCACAGCAGAT+GGG + chr5_3:65471392-65471411 Msa0825570:CDS 35.0%
ATTTAACACCGTTCTTCTCA+AGG - chr5_3:65471455-65471474 None:intergenic 35.0%
! GAGAAGAACGGTGTTAAATT+CGG + chr5_3:65471456-65471475 Msa0825570:CDS 35.0%
TTTGTTCAAGCCATTGTTAC+TGG + chr5_3:65471783-65471802 Msa0825570:CDS 35.0%
TTCTGCTTGTGTAGTTACAT+TGG - chr5_3:65471983-65472002 None:intergenic 35.0%
CACAAGAGTTGACATTTCTT+GGG - chr5_3:65472045-65472064 None:intergenic 35.0%
! GGTCTTAAAACTTTGTTGTC+TGG - chr5_3:65472163-65472182 None:intergenic 35.0%
GAATGAGTTTGCACACAAAA+CGG + chr5_3:65472244-65472263 Msa0825570:three_prime_UTR 35.0%
ATCCAACAATCAGCATTCAC+CGG + chr5_3:65470795-65470814 Msa0825570:CDS 40.0%
TTGTTTCAAACCAGTCTTGC+CGG - chr5_3:65470817-65470836 None:intergenic 40.0%
AATGAGTTCATCAGGAAAGC+TGG + chr5_3:65470840-65470859 Msa0825570:CDS 40.0%
ATCAGGAAAGCTGGTAACTT+TGG + chr5_3:65470849-65470868 Msa0825570:CDS 40.0%
ACTACTTACCAAATGCTCTC+AGG - chr5_3:65470915-65470934 None:intergenic 40.0%
CCCAAAAGCTAAAATTACGC+AGG + chr5_3:65471047-65471066 Msa0825570:intron 40.0%
! GATGGAATTTGCTCAGAGAA+TGG - chr5_3:65471282-65471301 None:intergenic 40.0%
AACTCACCAGTCAAGTATGA+TGG - chr5_3:65471300-65471319 None:intergenic 40.0%
! TCAGAGCATTCTTGCAATCT+GGG + chr5_3:65471563-65471582 Msa0825570:CDS 40.0%
TTTGTTGAAGGCTACAGAGT+TGG + chr5_3:65471609-65471628 Msa0825570:CDS 40.0%
AAGGTCAAGGAACTCAAGAA+CGG + chr5_3:65471729-65471748 Msa0825570:CDS 40.0%
ACATGGAGAACATAGCCAAT+CGG - chr5_3:65471755-65471774 None:intergenic 40.0%
TTGGCTATGTTCTCCATGTT+TGG + chr5_3:65471756-65471775 Msa0825570:CDS 40.0%
ACATATAATCAGCCACAGAC+AGG - chr5_3:65472009-65472028 None:intergenic 40.0%
GCACAAGAGTTGACATTTCT+TGG - chr5_3:65472046-65472065 None:intergenic 40.0%
TGCACACAAAACGGTAAGAA+TGG + chr5_3:65472253-65472272 Msa0825570:three_prime_UTR 40.0%
GAATGGTGTTCAGATCAATC+AGG + chr5_3:65472270-65472289 Msa0825570:three_prime_UTR 40.0%
ATCCAACAATCAGCATTCAC+CGG + chr5_3:65470795-65470814 Msa0825570:CDS 40.0%
TTGTTTCAAACCAGTCTTGC+CGG - chr5_3:65470817-65470836 None:intergenic 40.0%
AATGAGTTCATCAGGAAAGC+TGG + chr5_3:65470840-65470859 Msa0825570:CDS 40.0%
ATCAGGAAAGCTGGTAACTT+TGG + chr5_3:65470849-65470868 Msa0825570:CDS 40.0%
ACTACTTACCAAATGCTCTC+AGG - chr5_3:65470915-65470934 None:intergenic 40.0%
CCCAAAAGCTAAAATTACGC+AGG + chr5_3:65471047-65471066 Msa0825570:intron 40.0%
! GATGGAATTTGCTCAGAGAA+TGG - chr5_3:65471282-65471301 None:intergenic 40.0%
AACTCACCAGTCAAGTATGA+TGG - chr5_3:65471300-65471319 None:intergenic 40.0%
! TCAGAGCATTCTTGCAATCT+GGG + chr5_3:65471563-65471582 Msa0825570:CDS 40.0%
TTTGTTGAAGGCTACAGAGT+TGG + chr5_3:65471609-65471628 Msa0825570:CDS 40.0%
AAGGTCAAGGAACTCAAGAA+CGG + chr5_3:65471729-65471748 Msa0825570:CDS 40.0%
ACATGGAGAACATAGCCAAT+CGG - chr5_3:65471755-65471774 None:intergenic 40.0%
TTGGCTATGTTCTCCATGTT+TGG + chr5_3:65471756-65471775 Msa0825570:CDS 40.0%
ACATATAATCAGCCACAGAC+AGG - chr5_3:65472009-65472028 None:intergenic 40.0%
GCACAAGAGTTGACATTTCT+TGG - chr5_3:65472046-65472065 None:intergenic 40.0%
TGCACACAAAACGGTAAGAA+TGG + chr5_3:65472253-65472272 Msa0825570:three_prime_UTR 40.0%
GAATGGTGTTCAGATCAATC+AGG + chr5_3:65472270-65472289 Msa0825570:three_prime_UTR 40.0%
TGATTGTTGGATTGCAGAGG+TGG - chr5_3:65470787-65470806 None:intergenic 45.0%
! TGCTGATTGTTGGATTGCAG+AGG - chr5_3:65470790-65470809 None:intergenic 45.0%
!! GGCAAGACTGGTTTGAAACA+AGG + chr5_3:65470816-65470835 Msa0825570:CDS 45.0%
GAGAATGGACCCAAGTACTT+GGG - chr5_3:65471267-65471286 None:intergenic 45.0%
AGAGAATGGACCCAAGTACT+TGG - chr5_3:65471268-65471287 None:intergenic 45.0%
TACTTGACTGGTGAGTTTCC+TGG + chr5_3:65471303-65471322 Msa0825570:CDS 45.0%
AGTTTCCTGGTGACTATGGA+TGG + chr5_3:65471316-65471335 Msa0825570:CDS 45.0%
GTTTCCTGGTGACTATGGAT+GGG + chr5_3:65471317-65471336 Msa0825570:CDS 45.0%
CTGATCCTGAAACCTTTGCA+AGG + chr5_3:65471358-65471377 Msa0825570:CDS 45.0%
CGTTCTTCTCAAGGATCTCA+GGG - chr5_3:65471446-65471465 None:intergenic 45.0%
CCTGAGATCCTTGAGAAGAA+CGG + chr5_3:65471444-65471463 Msa0825570:CDS 45.0%
! GAACGGTGTTAAATTCGGTG+AGG + chr5_3:65471461-65471480 Msa0825570:CDS 45.0%
! TTAAATTCGGTGAGGCTGTG+TGG + chr5_3:65471469-65471488 Msa0825570:CDS 45.0%
! TTGGGTTGCCCAAATAGTCA+AGG - chr5_3:65471530-65471549 None:intergenic 45.0%
TCTGAGCATGGATCAGGTTT+GGG - chr5_3:65471548-65471567 None:intergenic 45.0%
! TTGCAAGAATGCTCTGAGCA+TGG - chr5_3:65471560-65471579 None:intergenic 45.0%
! CTCAGAGCATTCTTGCAATC+TGG + chr5_3:65471562-65471581 Msa0825570:CDS 45.0%
!! GTGCTCATGGGATTTGTTGA+AGG + chr5_3:65471597-65471616 Msa0825570:CDS 45.0%
TCAACTCTGCGAATGCATCA+GGG - chr5_3:65471710-65471729 None:intergenic 45.0%
TTCAACTCTGCGAATGCATC+AGG - chr5_3:65471711-65471730 None:intergenic 45.0%
TGATGCATTCGCAGAGTTGA+AGG + chr5_3:65471710-65471729 Msa0825570:CDS 45.0%
ATTCGCAGAGTTGAAGGTCA+AGG + chr5_3:65471716-65471735 Msa0825570:CDS 45.0%
TCAAGCCATTGTTACTGGCA+AGG + chr5_3:65471788-65471807 Msa0825570:CDS 45.0%
CAAGCCATTGTTACTGGCAA+GGG + chr5_3:65471789-65471808 Msa0825570:CDS 45.0%
!! GGTCGTAAAGGTTCTGAACA+GGG - chr5_3:65471815-65471834 None:intergenic 45.0%
!! TGGTCGTAAAGGTTCTGAAC+AGG - chr5_3:65471816-65471835 None:intergenic 45.0%
TATGCTACTAACTTCGTCCC+CGG + chr5_3:65471870-65471889 Msa0825570:CDS 45.0%
ACAATGAGAACGCCAAGACA+TGG + chr5_3:65471893-65471912 Msa0825570:exon 45.0%
AGCAGAAGATTCAGCTCAAG+AGG - chr5_3:65471922-65471941 None:intergenic 45.0%
TGGTGTTCAGATCAATCAGG+TGG + chr5_3:65472273-65472292 Msa0825570:three_prime_UTR 45.0%
GTTCAGATCAATCAGGTGGT+AGG + chr5_3:65472277-65472296 Msa0825570:three_prime_UTR 45.0%
TGATTGTTGGATTGCAGAGG+TGG - chr5_3:65470787-65470806 None:intergenic 45.0%
! TGCTGATTGTTGGATTGCAG+AGG - chr5_3:65470790-65470809 None:intergenic 45.0%
!! GGCAAGACTGGTTTGAAACA+AGG + chr5_3:65470816-65470835 Msa0825570:CDS 45.0%
GAGAATGGACCCAAGTACTT+GGG - chr5_3:65471267-65471286 None:intergenic 45.0%
AGAGAATGGACCCAAGTACT+TGG - chr5_3:65471268-65471287 None:intergenic 45.0%
TACTTGACTGGTGAGTTTCC+TGG + chr5_3:65471303-65471322 Msa0825570:CDS 45.0%
AGTTTCCTGGTGACTATGGA+TGG + chr5_3:65471316-65471335 Msa0825570:CDS 45.0%
GTTTCCTGGTGACTATGGAT+GGG + chr5_3:65471317-65471336 Msa0825570:CDS 45.0%
CTGATCCTGAAACCTTTGCA+AGG + chr5_3:65471358-65471377 Msa0825570:CDS 45.0%
CGTTCTTCTCAAGGATCTCA+GGG - chr5_3:65471446-65471465 None:intergenic 45.0%
CCTGAGATCCTTGAGAAGAA+CGG + chr5_3:65471444-65471463 Msa0825570:CDS 45.0%
! GAACGGTGTTAAATTCGGTG+AGG + chr5_3:65471461-65471480 Msa0825570:CDS 45.0%
! TTAAATTCGGTGAGGCTGTG+TGG + chr5_3:65471469-65471488 Msa0825570:CDS 45.0%
! TTGGGTTGCCCAAATAGTCA+AGG - chr5_3:65471530-65471549 None:intergenic 45.0%
TCTGAGCATGGATCAGGTTT+GGG - chr5_3:65471548-65471567 None:intergenic 45.0%
! TTGCAAGAATGCTCTGAGCA+TGG - chr5_3:65471560-65471579 None:intergenic 45.0%
! CTCAGAGCATTCTTGCAATC+TGG + chr5_3:65471562-65471581 Msa0825570:CDS 45.0%
!! GTGCTCATGGGATTTGTTGA+AGG + chr5_3:65471597-65471616 Msa0825570:CDS 45.0%
TCAACTCTGCGAATGCATCA+GGG - chr5_3:65471710-65471729 None:intergenic 45.0%
TTCAACTCTGCGAATGCATC+AGG - chr5_3:65471711-65471730 None:intergenic 45.0%
TGATGCATTCGCAGAGTTGA+AGG + chr5_3:65471710-65471729 Msa0825570:CDS 45.0%
ATTCGCAGAGTTGAAGGTCA+AGG + chr5_3:65471716-65471735 Msa0825570:CDS 45.0%
TCAAGCCATTGTTACTGGCA+AGG + chr5_3:65471788-65471807 Msa0825570:CDS 45.0%
CAAGCCATTGTTACTGGCAA+GGG + chr5_3:65471789-65471808 Msa0825570:CDS 45.0%
!! GGTCGTAAAGGTTCTGAACA+GGG - chr5_3:65471815-65471834 None:intergenic 45.0%
!! TGGTCGTAAAGGTTCTGAAC+AGG - chr5_3:65471816-65471835 None:intergenic 45.0%
TATGCTACTAACTTCGTCCC+CGG + chr5_3:65471870-65471889 Msa0825570:CDS 45.0%
ACAATGAGAACGCCAAGACA+TGG + chr5_3:65471893-65471912 Msa0825570:exon 45.0%
AGCAGAAGATTCAGCTCAAG+AGG - chr5_3:65471922-65471941 None:intergenic 45.0%
TGGTGTTCAGATCAATCAGG+TGG + chr5_3:65472273-65472292 Msa0825570:three_prime_UTR 45.0%
GTTCAGATCAATCAGGTGGT+AGG + chr5_3:65472277-65472296 Msa0825570:three_prime_UTR 45.0%
!! ATGAGGGCGTTGAGGTTTCT+TGG - chr5_3:65470762-65470781 None:intergenic 50.0%
AAGAAACCTCAACGCCCTCA+TGG + chr5_3:65470761-65470780 Msa0825570:exon 50.0%
! TGCCGGTGAATGCTGATTGT+TGG - chr5_3:65470800-65470819 None:intergenic 50.0%
ACTCTTCACAGTACGACGCA+TGG - chr5_3:65470889-65470908 None:intergenic 50.0%
!! AGAGTGCTCCTGAGAGCATT+TGG + chr5_3:65470904-65470923 Msa0825570:CDS 50.0%
ATGGACCCAAGTACTTGGGA+CGG - chr5_3:65471263-65471282 None:intergenic 50.0%
GGTGAGTTTCCTGGTGACTA+TGG + chr5_3:65471312-65471331 Msa0825570:CDS 50.0%
CGGTTCCTTGCAAAGGTTTC+AGG - chr5_3:65471366-65471385 None:intergenic 50.0%
AAGCTCACGGTTCCTTGCAA+AGG - chr5_3:65471373-65471392 None:intergenic 50.0%
!! ATGGGCTATGCTTGGTGCAT+TGG + chr5_3:65471410-65471429 Msa0825570:CDS 50.0%
!! TGGGCTATGCTTGGTGCATT+GGG + chr5_3:65471411-65471430 Msa0825570:CDS 50.0%
CTTCTCAAGGATCTCAGGGA+AGG - chr5_3:65471442-65471461 None:intergenic 50.0%
CCGTTCTTCTCAAGGATCTC+AGG - chr5_3:65471447-65471466 None:intergenic 50.0%
! AGAGGGTGGCCTTGACTATT+TGG + chr5_3:65471518-65471537 Msa0825570:CDS 50.0%
! GAGGGTGGCCTTGACTATTT+GGG + chr5_3:65471519-65471538 Msa0825570:CDS 50.0%
CTCTGAGCATGGATCAGGTT+TGG - chr5_3:65471549-65471568 None:intergenic 50.0%
! GAATGCTCTGAGCATGGATC+AGG - chr5_3:65471554-65471573 None:intergenic 50.0%
TCTTGCAATCTGGGCTACAC+AGG + chr5_3:65471572-65471591 Msa0825570:CDS 50.0%
GCTACACAGGTTGTGCTCAT+GGG + chr5_3:65471585-65471604 Msa0825570:CDS 50.0%
GTTGAAGGCTACAGAGTTGG+TGG + chr5_3:65471612-65471631 Msa0825570:CDS 50.0%
AGCAAGACCAAGAGGGTCAA+AGG - chr5_3:65471682-65471701 None:intergenic 50.0%
GGTCATCAGCAAGACCAAGA+GGG - chr5_3:65471689-65471708 None:intergenic 50.0%
GGTCAGCAACATGGTCGTAA+AGG - chr5_3:65471827-65471846 None:intergenic 50.0%
AGCATATGCCCATGCGTTGT+TGG - chr5_3:65471856-65471875 None:intergenic 50.0%
TCTTGGCGTTCTCATTGTCC+GGG - chr5_3:65471891-65471910 None:intergenic 50.0%
GTCTTGGCGTTCTCATTGTC+CGG - chr5_3:65471892-65471911 None:intergenic 50.0%
ATGAGAACGCCAAGACATGG+TGG + chr5_3:65471896-65471915 Msa0825570:exon 50.0%
CAAGCAGAAGAACCTGTCTG+TGG + chr5_3:65471994-65472013 Msa0825570:three_prime_UTR 50.0%
GTGGTAGGTAACAATGCACC+TGG + chr5_3:65472292-65472311 Msa0825570:three_prime_UTR 50.0%
!! ATGAGGGCGTTGAGGTTTCT+TGG - chr5_3:65470762-65470781 None:intergenic 50.0%
AAGAAACCTCAACGCCCTCA+TGG + chr5_3:65470761-65470780 Msa0825570:exon 50.0%
! TGCCGGTGAATGCTGATTGT+TGG - chr5_3:65470800-65470819 None:intergenic 50.0%
ACTCTTCACAGTACGACGCA+TGG - chr5_3:65470889-65470908 None:intergenic 50.0%
!! AGAGTGCTCCTGAGAGCATT+TGG + chr5_3:65470904-65470923 Msa0825570:CDS 50.0%
ATGGACCCAAGTACTTGGGA+CGG - chr5_3:65471263-65471282 None:intergenic 50.0%
GGTGAGTTTCCTGGTGACTA+TGG + chr5_3:65471312-65471331 Msa0825570:CDS 50.0%
CGGTTCCTTGCAAAGGTTTC+AGG - chr5_3:65471366-65471385 None:intergenic 50.0%
AAGCTCACGGTTCCTTGCAA+AGG - chr5_3:65471373-65471392 None:intergenic 50.0%
!! ATGGGCTATGCTTGGTGCAT+TGG + chr5_3:65471410-65471429 Msa0825570:CDS 50.0%
!! TGGGCTATGCTTGGTGCATT+GGG + chr5_3:65471411-65471430 Msa0825570:CDS 50.0%
CTTCTCAAGGATCTCAGGGA+AGG - chr5_3:65471442-65471461 None:intergenic 50.0%
CCGTTCTTCTCAAGGATCTC+AGG - chr5_3:65471447-65471466 None:intergenic 50.0%
! AGAGGGTGGCCTTGACTATT+TGG + chr5_3:65471518-65471537 Msa0825570:CDS 50.0%
! GAGGGTGGCCTTGACTATTT+GGG + chr5_3:65471519-65471538 Msa0825570:CDS 50.0%
CTCTGAGCATGGATCAGGTT+TGG - chr5_3:65471549-65471568 None:intergenic 50.0%
! GAATGCTCTGAGCATGGATC+AGG - chr5_3:65471554-65471573 None:intergenic 50.0%
TCTTGCAATCTGGGCTACAC+AGG + chr5_3:65471572-65471591 Msa0825570:CDS 50.0%
GCTACACAGGTTGTGCTCAT+GGG + chr5_3:65471585-65471604 Msa0825570:CDS 50.0%
GTTGAAGGCTACAGAGTTGG+TGG + chr5_3:65471612-65471631 Msa0825570:CDS 50.0%
AGCAAGACCAAGAGGGTCAA+AGG - chr5_3:65471682-65471701 None:intergenic 50.0%
GGTCATCAGCAAGACCAAGA+GGG - chr5_3:65471689-65471708 None:intergenic 50.0%
GGTCAGCAACATGGTCGTAA+AGG - chr5_3:65471827-65471846 None:intergenic 50.0%
AGCATATGCCCATGCGTTGT+TGG - chr5_3:65471856-65471875 None:intergenic 50.0%
TCTTGGCGTTCTCATTGTCC+GGG - chr5_3:65471891-65471910 None:intergenic 50.0%
GTCTTGGCGTTCTCATTGTC+CGG - chr5_3:65471892-65471911 None:intergenic 50.0%
ATGAGAACGCCAAGACATGG+TGG + chr5_3:65471896-65471915 Msa0825570:exon 50.0%
CAAGCAGAAGAACCTGTCTG+TGG + chr5_3:65471994-65472013 Msa0825570:three_prime_UTR 50.0%
GTGGTAGGTAACAATGCACC+TGG + chr5_3:65472292-65472311 Msa0825570:three_prime_UTR 50.0%
GATTGCAGAGGTGGCCATGA+GGG - chr5_3:65470778-65470797 None:intergenic 55.0%
TCAGCATTCACCGGCAAGAC+TGG + chr5_3:65470804-65470823 Msa0825570:CDS 55.0%
CCAAGTACTTGGGACGGTCA+GGG - chr5_3:65471257-65471276 None:intergenic 55.0%
CCTGACCGTCCCAAGTACTT+GGG + chr5_3:65471255-65471274 Msa0825570:CDS 55.0%
GTGTCCCATCCATAGTCACC+AGG - chr5_3:65471324-65471343 None:intergenic 55.0%
GACTATGGATGGGACACAGC+TGG + chr5_3:65471327-65471346 Msa0825570:CDS 55.0%
!! CACAGCAGATGGGCTATGCT+TGG + chr5_3:65471402-65471421 Msa0825570:CDS 55.0%
CGGTGAGGCTGTGTGGTTTA+AGG + chr5_3:65471476-65471495 Msa0825570:CDS 55.0%
! GAGGCTGTGTGGTTTAAGGC+TGG + chr5_3:65471480-65471499 Msa0825570:CDS 55.0%
TGGTGCCCAGATCTTCTCAG+AGG + chr5_3:65471500-65471519 Msa0825570:CDS 55.0%
GGTGCCCAGATCTTCTCAGA+GGG + chr5_3:65471501-65471520 Msa0825570:CDS 55.0%
! GCCACCCTCTGAGAAGATCT+GGG - chr5_3:65471508-65471527 None:intergenic 55.0%
GGCTACACAGGTTGTGCTCA+TGG + chr5_3:65471584-65471603 Msa0825570:CDS 55.0%
!! GAAGGCTACAGAGTTGGTGG+AGG + chr5_3:65471615-65471634 Msa0825570:CDS 55.0%
!! AGAGTTGGTGGAGGACCACT+TGG + chr5_3:65471624-65471643 Msa0825570:CDS 55.0%
GGGTCTAGTCCTTCACCAAG+TGG - chr5_3:65471642-65471661 None:intergenic 55.0%
GGACTAGACCCACTATACCC+TGG + chr5_3:65471651-65471670 Msa0825570:CDS 55.0%
CTAGACCCACTATACCCTGG+TGG + chr5_3:65471654-65471673 Msa0825570:CDS 55.0%
AGGCACCACCAGGGTATAGT+GGG - chr5_3:65471662-65471681 None:intergenic 55.0%
! AAGGCACCACCAGGGTATAG+TGG - chr5_3:65471663-65471682 None:intergenic 55.0%
GGGTCATCAGCAAGACCAAG+AGG - chr5_3:65471690-65471709 None:intergenic 55.0%
GGAACTCAAGAACGGCCGAT+TGG + chr5_3:65471737-65471756 Msa0825570:CDS 55.0%
AGGGCCCTTGCCAGTAACAA+TGG - chr5_3:65471796-65471815 None:intergenic 55.0%
CTTGGCGTTCTCATTGTCCG+GGG - chr5_3:65471890-65471909 None:intergenic 55.0%
CTCAAGAGGCCACCATGTCT+TGG - chr5_3:65471908-65471927 None:intergenic 55.0%
GATTGCAGAGGTGGCCATGA+GGG - chr5_3:65470778-65470797 None:intergenic 55.0%
TCAGCATTCACCGGCAAGAC+TGG + chr5_3:65470804-65470823 Msa0825570:CDS 55.0%
CCAAGTACTTGGGACGGTCA+GGG - chr5_3:65471257-65471276 None:intergenic 55.0%
CCTGACCGTCCCAAGTACTT+GGG + chr5_3:65471255-65471274 Msa0825570:CDS 55.0%
GTGTCCCATCCATAGTCACC+AGG - chr5_3:65471324-65471343 None:intergenic 55.0%
GACTATGGATGGGACACAGC+TGG + chr5_3:65471327-65471346 Msa0825570:CDS 55.0%
!! CACAGCAGATGGGCTATGCT+TGG + chr5_3:65471402-65471421 Msa0825570:CDS 55.0%
CGGTGAGGCTGTGTGGTTTA+AGG + chr5_3:65471476-65471495 Msa0825570:CDS 55.0%
! GAGGCTGTGTGGTTTAAGGC+TGG + chr5_3:65471480-65471499 Msa0825570:CDS 55.0%
TGGTGCCCAGATCTTCTCAG+AGG + chr5_3:65471500-65471519 Msa0825570:CDS 55.0%
GGTGCCCAGATCTTCTCAGA+GGG + chr5_3:65471501-65471520 Msa0825570:CDS 55.0%
! GCCACCCTCTGAGAAGATCT+GGG - chr5_3:65471508-65471527 None:intergenic 55.0%
GGCTACACAGGTTGTGCTCA+TGG + chr5_3:65471584-65471603 Msa0825570:CDS 55.0%
!! GAAGGCTACAGAGTTGGTGG+AGG + chr5_3:65471615-65471634 Msa0825570:CDS 55.0%
!! AGAGTTGGTGGAGGACCACT+TGG + chr5_3:65471624-65471643 Msa0825570:CDS 55.0%
GGGTCTAGTCCTTCACCAAG+TGG - chr5_3:65471642-65471661 None:intergenic 55.0%
GGACTAGACCCACTATACCC+TGG + chr5_3:65471651-65471670 Msa0825570:CDS 55.0%
CTAGACCCACTATACCCTGG+TGG + chr5_3:65471654-65471673 Msa0825570:CDS 55.0%
AGGCACCACCAGGGTATAGT+GGG - chr5_3:65471662-65471681 None:intergenic 55.0%
! AAGGCACCACCAGGGTATAG+TGG - chr5_3:65471663-65471682 None:intergenic 55.0%
GGGTCATCAGCAAGACCAAG+AGG - chr5_3:65471690-65471709 None:intergenic 55.0%
GGAACTCAAGAACGGCCGAT+TGG + chr5_3:65471737-65471756 Msa0825570:CDS 55.0%
AGGGCCCTTGCCAGTAACAA+TGG - chr5_3:65471796-65471815 None:intergenic 55.0%
CTTGGCGTTCTCATTGTCCG+GGG - chr5_3:65471890-65471909 None:intergenic 55.0%
CTCAAGAGGCCACCATGTCT+TGG - chr5_3:65471908-65471927 None:intergenic 55.0%
GGATTGCAGAGGTGGCCATG+AGG - chr5_3:65470779-65470798 None:intergenic 60.0%
CCCTGACCGTCCCAAGTACT+TGG + chr5_3:65471254-65471273 Msa0825570:CDS 60.0%
CCCAAGTACTTGGGACGGTC+AGG - chr5_3:65471258-65471277 None:intergenic 60.0%
GCCCAGATCTTCTCAGAGGG+TGG + chr5_3:65471504-65471523 Msa0825570:CDS 60.0%
! GGCCACCCTCTGAGAAGATC+TGG - chr5_3:65471509-65471528 None:intergenic 60.0%
! GGTGGAGGACCACTTGGTGA+AGG + chr5_3:65471630-65471649 Msa0825570:CDS 60.0%
!! GAGGGTCAAAGGCACCACCA+GGG - chr5_3:65471671-65471690 None:intergenic 60.0%
!! AGAGGGTCAAAGGCACCACC+AGG - chr5_3:65471672-65471691 None:intergenic 60.0%
GGTGGTGCCTTTGACCCTCT+TGG + chr5_3:65471672-65471691 Msa0825570:CDS 60.0%
TGGCGACAGGGTCAGCAACA+TGG - chr5_3:65471836-65471855 None:intergenic 60.0%
ACCCTGTCGCCAACAACGCA+TGG + chr5_3:65471844-65471863 Msa0825570:CDS 60.0%
CCCATGCGTTGTTGGCGACA+GGG - chr5_3:65471848-65471867 None:intergenic 60.0%
CCCTGTCGCCAACAACGCAT+GGG + chr5_3:65471845-65471864 Msa0825570:CDS 60.0%
GGATTGCAGAGGTGGCCATG+AGG - chr5_3:65470779-65470798 None:intergenic 60.0%
CCCTGACCGTCCCAAGTACT+TGG + chr5_3:65471254-65471273 Msa0825570:CDS 60.0%
CCCAAGTACTTGGGACGGTC+AGG - chr5_3:65471258-65471277 None:intergenic 60.0%
GCCCAGATCTTCTCAGAGGG+TGG + chr5_3:65471504-65471523 Msa0825570:CDS 60.0%
! GGCCACCCTCTGAGAAGATC+TGG - chr5_3:65471509-65471528 None:intergenic 60.0%
! GGTGGAGGACCACTTGGTGA+AGG + chr5_3:65471630-65471649 Msa0825570:CDS 60.0%
!! GAGGGTCAAAGGCACCACCA+GGG - chr5_3:65471671-65471690 None:intergenic 60.0%
!! AGAGGGTCAAAGGCACCACC+AGG - chr5_3:65471672-65471691 None:intergenic 60.0%
GGTGGTGCCTTTGACCCTCT+TGG + chr5_3:65471672-65471691 Msa0825570:CDS 60.0%
TGGCGACAGGGTCAGCAACA+TGG - chr5_3:65471836-65471855 None:intergenic 60.0%
ACCCTGTCGCCAACAACGCA+TGG + chr5_3:65471844-65471863 Msa0825570:CDS 60.0%
CCCATGCGTTGTTGGCGACA+GGG - chr5_3:65471848-65471867 None:intergenic 60.0%
CCCTGTCGCCAACAACGCAT+GGG + chr5_3:65471845-65471864 Msa0825570:CDS 60.0%
!! AGGTGGCCATGAGGGCGTTG+AGG - chr5_3:65470770-65470789 None:intergenic 65.0%
GCCCATGCGTTGTTGGCGAC+AGG - chr5_3:65471849-65471868 None:intergenic 65.0%
!! AGGTGGCCATGAGGGCGTTG+AGG - chr5_3:65470770-65470789 None:intergenic 65.0%
GCCCATGCGTTGTTGGCGAC+AGG - chr5_3:65471849-65471868 None:intergenic 65.0%
GGGACGGTCAGGGCCATACC+TGG - chr5_3:65471247-65471266 None:intergenic 70.0%
GGGACGGTCAGGGCCATACC+TGG - chr5_3:65471247-65471266 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 65470721 65472341 65470721 ID=Msa0825570;Name=Msa0825570
chr5_3 mRNA 65470721 65472341 65470721 ID=Msa0825570-mRNA-1;Parent=Msa0825570;Name=Msa0825570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=59|1|1|1|1|1|2|442|265
chr5_3 exon 65470721 65470925 65470721 ID=Msa0825570-mRNA-1:exon:20503;Parent=Msa0825570-mRNA-1
chr5_3 exon 65471248 65472341 65471248 ID=Msa0825570-mRNA-1:exon:20504;Parent=Msa0825570-mRNA-1
chr5_3 five_prime_UTR 65470721 65470779 65470721 ID=Msa0825570-mRNA-1:five_prime_utr;Parent=Msa0825570-mRNA-1
chr5_3 CDS 65470780 65470925 65470780 ID=Msa0825570-mRNA-1:cds;Parent=Msa0825570-mRNA-1
chr5_3 CDS 65471248 65471899 65471248 ID=Msa0825570-mRNA-1:cds;Parent=Msa0825570-mRNA-1
chr5_3 three_prime_UTR 65471900 65472341 65471900 ID=Msa0825570-mRNA-1:three_prime_utr;Parent=Msa0825570-mRNA-1
Gene Sequence

>Msa0825570

ATGGCCACCTCTGCAATCCAACAATCAGCATTCACCGGCAAGACTGGTTTGAAACAAGGAAATGAGTTCATCAGGAAAGCTGGTAACTTTGGTCAAAGTCGCTTCACCATGCGTCGTACTGTGAAGAGTGCTCCTGAGAGCATTTGGTATGGCCCTGACCGTCCCAAGTACTTGGGTCCATTCTCTGAGCAAATTCCATCATACTTGACTGGTGAGTTTCCTGGTGACTATGGATGGGACACAGCTGGATTATCAGCTGATCCTGAAACCTTTGCAAGGAACCGTGAGCTTGAAGTAATTCACAGCAGATGGGCTATGCTTGGTGCATTGGGATGTACCTTCCCTGAGATCCTTGAGAAGAACGGTGTTAAATTCGGTGAGGCTGTGTGGTTTAAGGCTGGTGCCCAGATCTTCTCAGAGGGTGGCCTTGACTATTTGGGCAACCCAAACCTGATCCATGCTCAGAGCATTCTTGCAATCTGGGCTACACAGGTTGTGCTCATGGGATTTGTTGAAGGCTACAGAGTTGGTGGAGGACCACTTGGTGAAGGACTAGACCCACTATACCCTGGTGGTGCCTTTGACCCTCTTGGTCTTGCTGATGACCCTGATGCATTCGCAGAGTTGAAGGTCAAGGAACTCAAGAACGGCCGATTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCCATTGTTACTGGCAAGGGCCCTGTTCAGAACCTTTACGACCATGTTGCTGACCCTGTCGCCAACAACGCATGGGCATATGCTACTAACTTCGTCCCCGGACAATGA

Protein sequence

>Msa0825570

MATSAIQQSAFTGKTGLKQGNEFIRKAGNFGQSRFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADPVANNAWAYATNFVPGQ*