Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584420 | ACJ83285.1 | 98.052 | 154 | 3 | 0 | 1 | 154 | 1 | 154 | 1.35e-106 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584420 | sp|A0A067XRK9|XTH6_DIOKA | 84.733 | 131 | 20 | 0 | 24 | 154 | 30 | 160 | 4.49e-81 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584420 | B7FF95 | 98.052 | 154 | 3 | 0 | 1 | 154 | 1 | 154 | 6.44e-107 | 314 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0584420 | 0.802772 | 4.787353e-49 | -8.615850e-47 |
| Msa0005890 | Msa0584420 | 0.831277 | 1.828939e-55 | -8.615850e-47 |
| Msa0008040 | Msa0584420 | 0.801700 | 7.956842e-49 | -8.615850e-47 |
| Msa0018160 | Msa0584420 | 0.838696 | 2.466590e-57 | -8.615850e-47 |
| Msa0019900 | Msa0584420 | 0.804577 | 2.020622e-49 | -8.615850e-47 |
| Msa0025160 | Msa0584420 | 0.822328 | 2.512627e-53 | -8.615850e-47 |
| Msa0025580 | Msa0584420 | 0.823002 | 1.751091e-53 | -8.615850e-47 |
| Msa0027280 | Msa0584420 | 0.810526 | 1.103440e-50 | -8.615850e-47 |
| Msa0029970 | Msa0584420 | 0.819329 | 1.229624e-52 | -8.615850e-47 |
| Msa0032460 | Msa0584420 | 0.818543 | 1.855274e-52 | -8.615850e-47 |
| Msa0034210 | Msa0584420 | 0.802969 | 4.358177e-49 | -8.615850e-47 |
| Msa0036870 | Msa0584420 | 0.818396 | 2.003750e-52 | -8.615850e-47 |
| Msa0050660 | Msa0584420 | 0.828406 | 9.152545e-55 | -8.615850e-47 |
| Msa0050700 | Msa0584420 | 0.828092 | 1.089300e-54 | -8.615850e-47 |
| Msa0050790 | Msa0584420 | 0.835843 | 1.325542e-56 | -8.615850e-47 |
| Msa0052260 | Msa0584420 | 0.816798 | 4.591780e-52 | -8.615850e-47 |
| Msa0054690 | Msa0584420 | 0.860974 | 1.420007e-63 | -8.615850e-47 |
| Msa0067330 | Msa0584420 | 0.808094 | 3.666918e-50 | -8.615850e-47 |
| Msa0071850 | Msa0584420 | 0.852623 | 4.087653e-61 | -8.615850e-47 |
| Msa0071860 | Msa0584420 | 0.861764 | 8.157955e-64 | -8.615850e-47 |
| Msa0071880 | Msa0584420 | 0.810523 | 1.105173e-50 | -8.615850e-47 |
| Msa0073120 | Msa0584420 | 0.819349 | 1.217028e-52 | -8.615850e-47 |
| Msa0090400 | Msa0584420 | 0.821902 | 3.153375e-53 | -8.615850e-47 |
| Msa0097260 | Msa0584420 | 0.800437 | 1.441994e-48 | -8.615850e-47 |
| Msa0108880 | Msa0584420 | 0.807764 | 4.309126e-50 | -8.615850e-47 |
| Msa0117480 | Msa0584420 | 0.806289 | 8.844627e-50 | -8.615850e-47 |
| Msa0121330 | Msa0584420 | 0.808765 | 2.637348e-50 | -8.615850e-47 |
| Msa0125210 | Msa0584420 | 0.834085 | 3.674111e-56 | -8.615850e-47 |
| Msa0128310 | Msa0584420 | 0.819891 | 9.153371e-53 | -8.615850e-47 |
| Msa0136650 | Msa0584420 | 0.834700 | 2.575432e-56 | -8.615850e-47 |
| Msa0137880 | Msa0584420 | 0.801262 | 9.785237e-49 | -8.615850e-47 |
| Msa0140280 | Msa0584420 | 0.817960 | 2.514228e-52 | -8.615850e-47 |
| Msa0146040 | Msa0584420 | 0.838565 | 2.666498e-57 | -8.615850e-47 |
| Msa0149350 | Msa0584420 | 0.823805 | 1.136434e-53 | -8.615850e-47 |
| Msa0158860 | Msa0584420 | 0.842673 | 2.239782e-58 | -8.615850e-47 |
| Msa0160860 | Msa0584420 | 0.806251 | 9.006577e-50 | -8.615850e-47 |
| Msa0174440 | Msa0584420 | 0.811525 | 6.702027e-51 | -8.615850e-47 |
| Msa0174450 | Msa0584420 | 0.800638 | 1.312041e-48 | -8.615850e-47 |
| Msa0180650 | Msa0584420 | 0.808778 | 2.619892e-50 | -8.615850e-47 |
| Msa0188610 | Msa0584420 | 0.825915 | 3.612553e-54 | -8.615850e-47 |
| Msa0190570 | Msa0584420 | 0.817584 | 3.057004e-52 | -8.615850e-47 |
| Msa0200050 | Msa0584420 | 0.806102 | 9.683153e-50 | -8.615850e-47 |
| Msa0213030 | Msa0584420 | 0.802158 | 6.407866e-49 | -8.615850e-47 |
| Msa0225860 | Msa0584420 | 0.822115 | 2.815242e-53 | -8.615850e-47 |
| Msa0230800 | Msa0584420 | 0.833478 | 5.211795e-56 | -8.615850e-47 |
| Msa0230870 | Msa0584420 | 0.820116 | 8.127949e-53 | -8.615850e-47 |
| Msa0369790 | Msa0584420 | 0.835556 | 1.566968e-56 | -8.615850e-47 |
| Msa0371480 | Msa0584420 | 0.827472 | 1.535504e-54 | -8.615850e-47 |
| Msa0380620 | Msa0584420 | 0.849307 | 3.518012e-60 | -8.615850e-47 |
| Msa0380670 | Msa0584420 | 0.825435 | 4.695619e-54 | -8.615850e-47 |
| Msa0405680 | Msa0584420 | 0.812860 | 3.427064e-51 | -8.615850e-47 |
| Msa0418970 | Msa0584420 | 0.812244 | 4.673507e-51 | -8.615850e-47 |
| Msa0419700 | Msa0584420 | 0.859720 | 3.402008e-63 | -8.615850e-47 |
| Msa0430260 | Msa0584420 | 0.829017 | 6.511632e-55 | -8.615850e-47 |
| Msa0430300 | Msa0584420 | 0.829894 | 3.986068e-55 | -8.615850e-47 |
| Msa0435210 | Msa0584420 | 0.840069 | 1.085327e-57 | -8.615850e-47 |
| Msa0436910 | Msa0584420 | 0.801027 | 1.092766e-48 | -8.615850e-47 |
| Msa0450160 | Msa0584420 | 0.849773 | 2.608035e-60 | -8.615850e-47 |
| Msa0464000 | Msa0584420 | 0.836112 | 1.132312e-56 | -8.615850e-47 |
| Msa0472950 | Msa0584420 | 0.819306 | 1.244414e-52 | -8.615850e-47 |
| Msa0479320 | Msa0584420 | 0.823965 | 1.042292e-53 | -8.615850e-47 |
| Msa0242590 | Msa0584420 | 0.815090 | 1.104861e-51 | -8.615850e-47 |
| Msa0244640 | Msa0584420 | 0.803778 | 2.963557e-49 | -8.615850e-47 |
| Msa0270340 | Msa0584420 | 0.825740 | 3.975289e-54 | -8.615850e-47 |
| Msa0280790 | Msa0584420 | 0.808238 | 3.416191e-50 | -8.615850e-47 |
| Msa0292160 | Msa0584420 | 0.811434 | 7.016173e-51 | -8.615850e-47 |
| Msa0298470 | Msa0584420 | 0.822149 | 2.764600e-53 | -8.615850e-47 |
| Msa0359020 | Msa0584420 | 0.826706 | 2.342107e-54 | -8.615850e-47 |
| Msa0483910 | Msa0584420 | 0.800749 | 1.245477e-48 | -8.615850e-47 |
| Msa0509550 | Msa0584420 | 0.824406 | 8.213490e-54 | -8.615850e-47 |
| Msa0511750 | Msa0584420 | 0.854783 | 9.780079e-62 | -8.615850e-47 |
| Msa0517250 | Msa0584420 | 0.811799 | 5.844756e-51 | -8.615850e-47 |
| Msa0528570 | Msa0584420 | 0.857377 | 1.700882e-62 | -8.615850e-47 |
| Msa0530780 | Msa0584420 | 0.810258 | 1.260551e-50 | -8.615850e-47 |
| Msa0541300 | Msa0584420 | 0.848357 | 6.453984e-60 | -8.615850e-47 |
| Msa0541310 | Msa0584420 | 0.844548 | 7.061255e-59 | -8.615850e-47 |
| Msa0543660 | Msa0584420 | 0.972937 | 1.374160e-135 | -8.615850e-47 |
| Msa0548470 | Msa0584420 | 0.866212 | 3.363967e-65 | -8.615850e-47 |
| Msa0557460 | Msa0584420 | 0.865407 | 6.040200e-65 | -8.615850e-47 |
| Msa0567170 | Msa0584420 | 0.838224 | 3.265481e-57 | -8.615850e-47 |
| Msa0580370 | Msa0584420 | 0.836820 | 7.479927e-57 | -8.615850e-47 |
| Msa0584420 | Msa0585020 | 0.862970 | 3.475160e-64 | -8.615850e-47 |
| Msa0584420 | Msa0587620 | 0.835226 | 1.898540e-56 | -8.615850e-47 |
| Msa0584420 | Msa0597270 | 0.856258 | 3.633636e-62 | -8.615850e-47 |
| Msa0584420 | Msa0600930 | 0.826690 | 2.362480e-54 | -8.615850e-47 |
| Msa0584420 | Msa0616210 | 0.817286 | 3.567188e-52 | -8.615850e-47 |
| Msa0584420 | Msa0626450 | 0.800725 | 1.259560e-48 | -8.615850e-47 |
| Msa0584420 | Msa0640200 | 0.969627 | 2.115026e-130 | -8.615850e-47 |
| Msa0584420 | Msa0644410 | 0.833109 | 6.441442e-56 | -8.615850e-47 |
| Msa0584420 | Msa0658640 | 0.839380 | 1.640282e-57 | -8.615850e-47 |
| Msa0584420 | Msa0661150 | 0.858308 | 9.004119e-63 | -8.615850e-47 |
| Msa0584420 | Msa0664600 | 0.800023 | 1.750170e-48 | -8.615850e-47 |
| Msa0584420 | Msa0666700 | 0.805597 | 1.235949e-49 | -8.615850e-47 |
| Msa0584420 | Msa0675330 | 0.860059 | 2.689081e-63 | -8.615850e-47 |
| Msa0584420 | Msa0678490 | 0.955496 | 2.650816e-113 | -8.615850e-47 |
| Msa0584420 | Msa0693890 | 0.801580 | 8.419561e-49 | -8.615850e-47 |
| Msa0584420 | Msa0699540 | 0.817938 | 2.543497e-52 | -8.615850e-47 |
| Msa0584420 | Msa0700460 | 0.849472 | 3.163866e-60 | -8.615850e-47 |
| Msa0584420 | Msa0703600 | 0.828910 | 6.912285e-55 | -8.615850e-47 |
| Msa0584420 | Msa0709200 | 0.826248 | 3.010815e-54 | -8.615850e-47 |
| Msa0584420 | Msa0713700 | 0.801845 | 7.428284e-49 | -8.615850e-47 |
| Msa0584420 | Msa0713960 | 0.800141 | 1.656074e-48 | -8.615850e-47 |
| Msa0584420 | Msa0725770 | 0.805924 | 1.055291e-49 | -8.615850e-47 |
| Msa0584420 | Msa0735780 | 0.834038 | 3.776044e-56 | -8.615850e-47 |
| Msa0584420 | Msa0738700 | 0.843010 | 1.822352e-58 | -8.615850e-47 |
| Msa0584420 | Msa0741220 | 0.813717 | 2.221869e-51 | -8.615850e-47 |
| Msa0584420 | Msa0761670 | 0.822971 | 1.780430e-53 | -8.615850e-47 |
| Msa0584420 | Msa0770330 | 0.804801 | 1.814600e-49 | -8.615850e-47 |
| Msa0584420 | Msa0795870 | 0.839252 | 1.771261e-57 | -8.615850e-47 |
| Msa0584420 | Msa0819170 | 0.822474 | 2.323854e-53 | -8.615850e-47 |
| Msa0584420 | Msa0824450 | 0.817560 | 3.095110e-52 | -8.615850e-47 |
| Msa0584420 | Msa0833650 | 0.839319 | 1.701616e-57 | -8.615850e-47 |
| Msa0584420 | Msa0859290 | 0.845435 | 4.068363e-59 | -8.615850e-47 |
| Msa0584420 | Msa0894790 | 0.816911 | 4.332236e-52 | -8.615850e-47 |
| Msa0584420 | Msa0905240 | 0.805457 | 1.322433e-49 | -8.615850e-47 |
| Msa0584420 | Msa0921590 | 0.807589 | 4.695721e-50 | -8.615850e-47 |
| Msa0584420 | Msa0974520 | 0.812218 | 4.734307e-51 | -8.615850e-47 |
| Msa0584420 | Msa1020480 | 0.805606 | 1.230946e-49 | -8.615850e-47 |
| Msa0584420 | Msa1028100 | 0.814300 | 1.652705e-51 | -8.615850e-47 |
| Msa0584420 | Msa1042160 | 0.859824 | 3.166640e-63 | -8.615850e-47 |
| Msa0584420 | Msa1042190 | 0.865108 | 7.500426e-65 | -8.615850e-47 |
| Msa0584420 | Msa1044680 | 0.805110 | 1.563837e-49 | -8.615850e-47 |
| Msa0584420 | Msa1080000 | 0.826516 | 2.598824e-54 | -8.615850e-47 |
| Msa0584420 | Msa1081690 | 0.803568 | 3.275724e-49 | -8.615850e-47 |
| Msa0584420 | Msa1082200 | 0.808052 | 3.743554e-50 | -8.615850e-47 |
| Msa0584420 | Msa1105640 | 0.811047 | 8.510462e-51 | -8.615850e-47 |
| Msa0584420 | Msa1105780 | 0.811787 | 5.877652e-51 | -8.615850e-47 |
| Msa0584420 | Msa1116660 | 0.806306 | 8.768165e-50 | -8.615850e-47 |
| Msa0584420 | Msa1117920 | 0.806903 | 6.561223e-50 | -8.615850e-47 |
| Msa0584420 | Msa1123210 | 0.812316 | 4.507339e-51 | -8.615850e-47 |
| Msa0584420 | Msa1132530 | 0.823283 | 1.505336e-53 | -8.615850e-47 |
| Msa0584420 | Msa1132840 | 0.834770 | 2.473184e-56 | -8.615850e-47 |
| Msa0584420 | Msa1161680 | 0.814329 | 1.628141e-51 | -8.615850e-47 |
| Msa0584420 | Msa1167470 | 0.856588 | 2.906299e-62 | -8.615850e-47 |
| Msa0584420 | Msa1203300 | 0.803030 | 4.234514e-49 | -8.615850e-47 |
| Msa0584420 | Msa1204040 | 0.804105 | 2.534735e-49 | -8.615850e-47 |
| Msa0584420 | Msa1208950 | 0.808800 | 2.592323e-50 | -8.615850e-47 |
| Msa0584420 | Msa1215870 | 0.814600 | 1.418575e-51 | -8.615850e-47 |
| Msa0584420 | Msa1216110 | 0.804204 | 2.416758e-49 | -8.615850e-47 |
| Msa0584420 | Msa1226520 | 0.843324 | 1.502526e-58 | -8.615850e-47 |
| Msa0584420 | Msa1240260 | 0.809697 | 1.664848e-50 | -8.615850e-47 |
| Msa0584420 | Msa1240770 | 0.835012 | 2.148829e-56 | -8.615850e-47 |
| Msa0584420 | Msa1268630 | 0.837825 | 4.135593e-57 | -8.615850e-47 |
| Msa0584420 | Msa1277640 | 0.826939 | 2.059458e-54 | -8.615850e-47 |
| Msa0584420 | Msa1315160 | 0.825402 | 4.779223e-54 | -8.615850e-47 |
| Msa0584420 | Msa1316330 | 0.827558 | 1.463966e-54 | -8.615850e-47 |
| Msa0584420 | Msa1321340 | 0.814112 | 1.818282e-51 | -8.615850e-47 |
| Msa0584420 | Msa1343180 | 0.825809 | 3.828573e-54 | -8.615850e-47 |
| Msa0584420 | Msa1359690 | 0.853368 | 2.502125e-61 | -8.615850e-47 |
| Msa0584420 | Msa1372040 | 0.804075 | 2.570655e-49 | -8.615850e-47 |
| Msa0584420 | Msa1384460 | 0.827716 | 1.341507e-54 | -8.615850e-47 |
| Msa0584420 | Msa1392580 | 0.800428 | 1.447903e-48 | -8.615850e-47 |
| Msa0584420 | Msa1395190 | 0.802617 | 5.152877e-49 | -8.615850e-47 |
| Msa0584420 | Msa1400010 | 0.807976 | 3.884538e-50 | -8.615850e-47 |
| Msa0584420 | Msa1409410 | 0.839592 | 1.444873e-57 | -8.615850e-47 |
| Msa0584420 | Msa1415540 | 0.846615 | 1.943290e-59 | -8.615850e-47 |
| Msa0584420 | Msa1420950 | 0.804090 | 2.552045e-49 | -8.615850e-47 |
| Msa0584420 | Msa1437930 | 0.821694 | 3.522704e-53 | -8.615850e-47 |
| Msa0584420 | Msa1440630 | 0.834875 | 2.327117e-56 | -8.615850e-47 |
| Msa0584420 | Msa1440960 | 0.805515 | 1.286243e-49 | -8.615850e-47 |
| Msa0584420 | Msa1452140 | 0.800866 | 1.178756e-48 | -8.615850e-47 |
| Msa0584420 | Msa1454140 | 0.811181 | 7.958803e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584420 | MtrunA17_Chr4g0023961 | 98.052 | 154 | 3 | 0 | 1 | 154 | 1 | 154 | 9.11e-110 | 313 |
| Msa0584420 | MtrunA17_Chr2g0323161 | 81.579 | 152 | 27 | 1 | 3 | 154 | 2 | 152 | 8.44e-90 | 263 |
| Msa0584420 | MtrunA17_Chr4g0054431 | 52.667 | 150 | 68 | 2 | 8 | 154 | 13 | 162 | 3.04e-52 | 167 |
| Msa0584420 | MtrunA17_Chr7g0252601 | 50.641 | 156 | 69 | 2 | 7 | 154 | 6 | 161 | 2.98e-51 | 165 |
| Msa0584420 | MtrunA17_Chr4g0054451 | 52.632 | 152 | 67 | 3 | 8 | 154 | 13 | 164 | 3.29e-51 | 165 |
| Msa0584420 | MtrunA17_Chr3g0122021 | 52.414 | 145 | 65 | 2 | 13 | 154 | 14 | 157 | 1.51e-50 | 162 |
| Msa0584420 | MtrunA17_Chr3g0122031 | 52.414 | 145 | 65 | 2 | 13 | 154 | 14 | 157 | 1.65e-50 | 162 |
| Msa0584420 | MtrunA17_Chr7g0252621 | 50.641 | 156 | 69 | 2 | 7 | 154 | 6 | 161 | 2.49e-50 | 162 |
| Msa0584420 | MtrunA17_Chr7g0252631 | 50.641 | 156 | 69 | 2 | 7 | 154 | 6 | 161 | 3.36e-50 | 162 |
| Msa0584420 | MtrunA17_Chr4g0071341 | 53.623 | 138 | 62 | 1 | 19 | 154 | 17 | 154 | 1.82e-49 | 160 |
| Msa0584420 | MtrunA17_Chr8g0389641 | 50.658 | 152 | 69 | 3 | 6 | 154 | 10 | 158 | 3.39e-49 | 158 |
| Msa0584420 | MtrunA17_Chr8g0377841 | 49.660 | 147 | 71 | 2 | 11 | 154 | 14 | 160 | 4.07e-49 | 159 |
| Msa0584420 | MtrunA17_Chr7g0258911 | 51.724 | 145 | 68 | 1 | 12 | 154 | 9 | 153 | 2.14e-48 | 157 |
| Msa0584420 | MtrunA17_Chr6g0461731 | 49.682 | 157 | 66 | 2 | 11 | 154 | 28 | 184 | 6.01e-48 | 157 |
| Msa0584420 | MtrunA17_Chr6g0461761 | 49.057 | 159 | 68 | 2 | 9 | 154 | 3 | 161 | 6.08e-48 | 156 |
| Msa0584420 | MtrunA17_Chr4g0072611 | 49.664 | 149 | 73 | 1 | 8 | 154 | 6 | 154 | 6.56e-48 | 156 |
| Msa0584420 | MtrunA17_Chr1g0206681 | 48.684 | 152 | 73 | 2 | 8 | 154 | 12 | 163 | 1.01e-47 | 156 |
| Msa0584420 | MtrunA17_Chr1g0206081 | 49.677 | 155 | 67 | 3 | 11 | 154 | 13 | 167 | 1.61e-46 | 153 |
| Msa0584420 | MtrunA17_Chr2g0299061 | 50.000 | 148 | 71 | 2 | 10 | 154 | 8 | 155 | 2.61e-46 | 152 |
| Msa0584420 | MtrunA17_Chr4g0072671 | 52.239 | 134 | 62 | 1 | 23 | 154 | 22 | 155 | 1.84e-45 | 150 |
| Msa0584420 | MtrunA17_Chr6g0486581 | 44.898 | 147 | 81 | 0 | 8 | 154 | 7 | 153 | 2.75e-44 | 147 |
| Msa0584420 | MtrunA17_Chr5g0443391 | 48.322 | 149 | 70 | 3 | 11 | 154 | 11 | 157 | 3.26e-44 | 147 |
| Msa0584420 | MtrunA17_Chr3g0096651 | 52.344 | 128 | 59 | 1 | 27 | 154 | 34 | 159 | 5.10e-42 | 141 |
| Msa0584420 | MtrunA17_Chr4g0072601 | 55.652 | 115 | 51 | 0 | 40 | 154 | 43 | 157 | 6.49e-42 | 140 |
| Msa0584420 | MtrunA17_Chr4g0072681 | 60.227 | 88 | 35 | 0 | 67 | 154 | 25 | 112 | 2.00e-36 | 125 |
| Msa0584420 | MtrunA17_Chr8g0340001 | 55.556 | 99 | 44 | 0 | 56 | 154 | 8 | 106 | 6.08e-36 | 124 |
| Msa0584420 | MtrunA17_Chr8g0375981 | 44.937 | 158 | 72 | 6 | 11 | 154 | 9 | 165 | 3.46e-32 | 116 |
| Msa0584420 | MtrunA17_Chr1g0161951 | 41.358 | 162 | 82 | 5 | 5 | 154 | 7 | 167 | 8.75e-31 | 113 |
| Msa0584420 | MtrunA17_Chr7g0264731 | 40.972 | 144 | 72 | 3 | 24 | 154 | 29 | 172 | 1.25e-29 | 109 |
| Msa0584420 | MtrunA17_Chr2g0303861 | 39.695 | 131 | 76 | 2 | 27 | 154 | 29 | 159 | 9.75e-29 | 106 |
| Msa0584420 | MtrunA17_Chr4g0028221 | 41.176 | 136 | 72 | 3 | 27 | 154 | 50 | 185 | 1.61e-28 | 106 |
| Msa0584420 | MtrunA17_Chr1g0180451 | 45.536 | 112 | 53 | 2 | 51 | 154 | 64 | 175 | 3.73e-28 | 105 |
| Msa0584420 | MtrunA17_Chr2g0327411 | 40.000 | 145 | 78 | 3 | 18 | 154 | 46 | 189 | 4.17e-27 | 103 |
| Msa0584420 | MtrunA17_Chr5g0410621 | 45.299 | 117 | 59 | 2 | 43 | 154 | 60 | 176 | 1.26e-26 | 102 |
| Msa0584420 | MtrunA17_Chr7g0235541 | 54.545 | 88 | 34 | 2 | 72 | 154 | 1 | 87 | 1.36e-26 | 99.4 |
| Msa0584420 | MtrunA17_Chr8g0365231 | 44.167 | 120 | 62 | 2 | 40 | 154 | 61 | 180 | 2.48e-26 | 100 |
| Msa0584420 | MtrunA17_Chr8g0382041 | 41.525 | 118 | 63 | 2 | 43 | 154 | 52 | 169 | 2.26e-25 | 99.0 |
| Msa0584420 | MtrunA17_Chr8g0390201 | 58.462 | 65 | 27 | 0 | 90 | 154 | 15 | 79 | 6.04e-24 | 92.8 |
| Msa0584420 | MtrunA17_Chr2g0303721 | 35.878 | 131 | 73 | 3 | 27 | 154 | 30 | 152 | 6.84e-23 | 91.3 |
| Msa0584420 | MtrunA17_Chr8g0390181 | 34.884 | 86 | 55 | 1 | 8 | 92 | 8 | 93 | 8.47e-12 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584420 | AT4G03210.1 | 71.523 | 151 | 36 | 1 | 11 | 154 | 6 | 156 | 8.05e-77 | 230 |
| Msa0584420 | AT4G03210.2 | 76.991 | 113 | 20 | 1 | 48 | 154 | 16 | 128 | 2.19e-58 | 182 |
| Msa0584420 | AT5G13870.2 | 51.899 | 158 | 72 | 2 | 1 | 154 | 4 | 161 | 7.59e-53 | 169 |
| Msa0584420 | AT5G13870.1 | 51.899 | 158 | 72 | 2 | 1 | 154 | 4 | 161 | 7.59e-53 | 169 |
| Msa0584420 | AT5G13870.3 | 51.899 | 158 | 72 | 2 | 1 | 154 | 4 | 161 | 7.59e-53 | 169 |
| Msa0584420 | AT4G37800.1 | 51.634 | 153 | 68 | 3 | 8 | 154 | 12 | 164 | 1.62e-51 | 166 |
| Msa0584420 | AT5G65730.1 | 50.000 | 150 | 71 | 3 | 8 | 154 | 17 | 165 | 5.04e-50 | 162 |
| Msa0584420 | AT1G11545.1 | 52.201 | 159 | 69 | 3 | 3 | 154 | 12 | 170 | 2.27e-49 | 160 |
| Msa0584420 | AT3G23730.1 | 53.061 | 147 | 63 | 3 | 11 | 154 | 13 | 156 | 5.65e-49 | 159 |
| Msa0584420 | AT5G57550.1 | 49.351 | 154 | 70 | 2 | 9 | 154 | 6 | 159 | 1.58e-47 | 155 |
| Msa0584420 | AT4G14130.1 | 50.000 | 156 | 73 | 3 | 2 | 154 | 4 | 157 | 5.96e-47 | 154 |
| Msa0584420 | AT5G57560.1 | 46.711 | 152 | 77 | 2 | 5 | 154 | 3 | 152 | 1.13e-46 | 153 |
| Msa0584420 | AT4G30270.1 | 47.436 | 156 | 77 | 2 | 1 | 154 | 1 | 153 | 1.81e-46 | 152 |
| Msa0584420 | AT4G25810.1 | 48.299 | 147 | 73 | 2 | 11 | 154 | 9 | 155 | 1.89e-46 | 152 |
| Msa0584420 | AT2G14620.1 | 48.344 | 151 | 73 | 2 | 9 | 154 | 16 | 166 | 6.05e-45 | 149 |
| Msa0584420 | AT2G06850.1 | 54.615 | 130 | 57 | 1 | 27 | 154 | 35 | 164 | 1.21e-44 | 148 |
| Msa0584420 | AT2G18800.1 | 48.993 | 149 | 69 | 2 | 8 | 154 | 14 | 157 | 8.14e-44 | 146 |
| Msa0584420 | AT4G28850.1 | 46.897 | 145 | 71 | 1 | 16 | 154 | 12 | 156 | 4.84e-43 | 144 |
| Msa0584420 | AT5G57530.1 | 52.586 | 116 | 55 | 0 | 39 | 154 | 41 | 156 | 1.32e-42 | 143 |
| Msa0584420 | AT4G25820.1 | 47.826 | 138 | 70 | 1 | 19 | 154 | 22 | 159 | 2.50e-42 | 142 |
| Msa0584420 | AT5G57540.1 | 52.586 | 116 | 55 | 0 | 39 | 154 | 40 | 155 | 6.13e-42 | 141 |
| Msa0584420 | AT5G48070.1 | 54.955 | 111 | 50 | 0 | 44 | 154 | 49 | 159 | 1.47e-41 | 140 |
| Msa0584420 | AT2G14620.2 | 57.576 | 99 | 42 | 0 | 56 | 154 | 18 | 116 | 6.64e-40 | 135 |
| Msa0584420 | AT4G13080.1 | 50.769 | 130 | 61 | 2 | 27 | 154 | 39 | 167 | 2.58e-39 | 134 |
| Msa0584420 | AT4G13090.1 | 50.769 | 130 | 62 | 1 | 27 | 154 | 32 | 161 | 2.77e-39 | 134 |
| Msa0584420 | AT2G06850.2 | 58.416 | 101 | 42 | 0 | 54 | 154 | 4 | 104 | 1.57e-38 | 131 |
| Msa0584420 | AT2G14620.3 | 58.889 | 90 | 37 | 0 | 65 | 154 | 16 | 105 | 1.04e-37 | 129 |
| Msa0584420 | AT3G25050.1 | 46.154 | 130 | 68 | 1 | 27 | 154 | 35 | 164 | 1.51e-37 | 130 |
| Msa0584420 | AT4G30290.1 | 51.515 | 99 | 48 | 0 | 56 | 154 | 56 | 154 | 2.74e-35 | 124 |
| Msa0584420 | AT1G65310.1 | 51.515 | 99 | 48 | 0 | 56 | 154 | 61 | 159 | 3.30e-35 | 124 |
| Msa0584420 | AT1G65310.2 | 51.515 | 99 | 48 | 0 | 56 | 154 | 83 | 181 | 3.90e-35 | 124 |
| Msa0584420 | AT4G30280.1 | 51.515 | 99 | 48 | 0 | 56 | 154 | 61 | 159 | 7.85e-35 | 122 |
| Msa0584420 | AT3G44990.1 | 45.455 | 143 | 70 | 3 | 20 | 154 | 32 | 174 | 8.07e-34 | 120 |
| Msa0584420 | AT2G01850.1 | 41.104 | 163 | 83 | 4 | 3 | 154 | 5 | 165 | 1.99e-30 | 112 |
| Msa0584420 | AT2G36870.2 | 40.288 | 139 | 75 | 2 | 24 | 154 | 40 | 178 | 3.74e-30 | 108 |
| Msa0584420 | AT1G14720.1 | 39.752 | 161 | 88 | 4 | 3 | 154 | 5 | 165 | 5.59e-30 | 111 |
| Msa0584420 | AT2G36870.1 | 40.288 | 139 | 75 | 2 | 24 | 154 | 40 | 178 | 1.53e-29 | 109 |
| Msa0584420 | AT1G10550.1 | 46.552 | 116 | 57 | 2 | 44 | 154 | 60 | 175 | 3.29e-28 | 106 |
| Msa0584420 | AT1G32170.1 | 40.252 | 159 | 82 | 5 | 8 | 154 | 9 | 166 | 3.46e-27 | 104 |
| Msa0584420 | AT3G48580.1 | 45.370 | 108 | 58 | 1 | 47 | 154 | 55 | 161 | 4.35e-27 | 102 |
| Msa0584420 | AT4G18990.1 | 43.411 | 129 | 60 | 3 | 39 | 154 | 46 | 174 | 1.18e-26 | 103 |
| Msa0584420 | AT3G48580.3 | 44.000 | 100 | 55 | 1 | 55 | 154 | 4 | 102 | 1.33e-24 | 94.7 |
| Msa0584420 | AT4G18990.2 | 52.459 | 61 | 27 | 1 | 96 | 154 | 40 | 100 | 6.31e-17 | 75.9 |
| Msa0584420 | AT3G48580.2 | 40.449 | 89 | 52 | 1 | 47 | 135 | 55 | 142 | 7.66e-16 | 72.4 |
Find 33 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTATCAAGTTTGAGTTTA+AGG | 0.041776 | 4_2:-3882672 | None:intergenic |
| CTGAACCTCTTTGGCTTGTT+GGG | 0.226860 | 4_2:-3882465 | None:intergenic |
| CCCAAACATATACTTGCTTT+TGG | 0.249364 | 4_2:-3882889 | None:intergenic |
| ACATTTGTTTGCACAGAATA+AGG | 0.263774 | 4_2:-3883687 | None:intergenic |
| TCCAAAAGCAAGTATATGTT+TGG | 0.311980 | 4_2:+3882888 | Msa0584420:CDS |
| ATGATGTGTCTATTGAATTA+TGG | 0.335350 | 4_2:+3882379 | Msa0584420:five_prime_UTR |
| TTTGAGACACTGAACCTCTT+TGG | 0.340400 | 4_2:-3882474 | None:intergenic |
| ACTGAACCTCTTTGGCTTGT+TGG | 0.341838 | 4_2:-3882466 | None:intergenic |
| CTCAAACTTGATAACTCTTC+TGG | 0.342527 | 4_2:+3882679 | Msa0584420:CDS |
| GATCTCCTTCATGGAGAAAA+TGG | 0.350214 | 4_2:-3882648 | None:intergenic |
| AAATCAAACTCGTTGTGGTT+TGG | 0.361017 | 4_2:-3883636 | None:intergenic |
| GTTTAAGGAGATCTCCTTCA+TGG | 0.368795 | 4_2:-3882657 | None:intergenic |
| CCAAAAGCAAGTATATGTTT+GGG | 0.446940 | 4_2:+3882889 | Msa0584420:CDS |
| AATGTGTATGTGAATGGAAT+TGG | 0.448488 | 4_2:+3883705 | Msa0584420:CDS |
| ATCCAGCTTAAGCTTGTTGA+AGG | 0.448965 | 4_2:+3882921 | Msa0584420:CDS |
| GTGAGCAAAGACTTAACCTT+TGG | 0.449716 | 4_2:+3883733 | Msa0584420:CDS |
| CACCTTCAACAAGCTTAAGC+TGG | 0.489730 | 4_2:-3882923 | None:intergenic |
| CTTGTTGAAGGTGACTCAGC+TGG | 0.494006 | 4_2:+3882933 | Msa0584420:CDS |
| CAAACAAATGTGTATGTGAA+TGG | 0.495017 | 4_2:+3883699 | Msa0584420:CDS |
| AGAGTAAGAGTGAAAATCCT+TGG | 0.520212 | 4_2:-3883766 | None:intergenic |
| TAAGAGTGAAAATCCTTGGT+AGG | 0.527500 | 4_2:-3883762 | None:intergenic |
| ATTCAAAATCAAACTCGTTG+TGG | 0.538842 | 4_2:-3883641 | None:intergenic |
| AAATGGTCAAAAGCCCAACT+TGG | 0.561534 | 4_2:-3882631 | None:intergenic |
| AAGTTCATCAAACTTGGAAG+AGG | 0.579984 | 4_2:-3882602 | None:intergenic |
| AAAGGTTAAGTCTTTGCTCA+CGG | 0.581166 | 4_2:-3883731 | None:intergenic |
| AAGAGTGAAAATCCTTGGTA+GGG | 0.591421 | 4_2:-3883761 | None:intergenic |
| CCTTGGTAGGGTCAAACCAA+AGG | 0.593403 | 4_2:-3883749 | None:intergenic |
| GTGATATAGATGTCATCAGA+GGG | 0.614058 | 4_2:+3883612 | Msa0584420:intron |
| ATAAACCCAACAAGCCAAAG+AGG | 0.614478 | 4_2:+3882460 | Msa0584420:five_prime_UTR |
| TTCCATCCTGGCATCTGATG+TGG | 0.618351 | 4_2:+3882345 | None:intergenic |
| CCTTTGGTTTGACCCTACCA+AGG | 0.640836 | 4_2:+3883749 | Msa0584420:CDS |
| TGTGATATAGATGTCATCAG+AGG | 0.645456 | 4_2:+3883611 | Msa0584420:intron |
| ATTCAATAGACACATCATCG+AGG | 0.777543 | 4_2:-3882374 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCAATTTAAATTTTTAAG+TGG | - | chr4_2:3882426-3882445 | None:intergenic | 10.0% |
| !!! | ACAAAAATATGTTTAAAATA+TGG | - | chr4_2:3882815-3882834 | None:intergenic | 10.0% |
| !!! | ATATTTTGATTAAATAACAA+TGG | + | chr4_2:3882838-3882857 | Msa0584420:intron | 10.0% |
| !!! | CTTTATACTAAATTAATTTT+TGG | + | chr4_2:3883466-3883485 | Msa0584420:intron | 10.0% |
| !!! | TTTCAATTTAAATTTTTAAG+TGG | - | chr4_2:3882426-3882445 | None:intergenic | 10.0% |
| !!! | ACAAAAATATGTTTAAAATA+TGG | - | chr4_2:3882815-3882834 | None:intergenic | 10.0% |
| !!! | ATATTTTGATTAAATAACAA+TGG | + | chr4_2:3882838-3882857 | Msa0584420:intron | 10.0% |
| !!! | CTTTATACTAAATTAATTTT+TGG | + | chr4_2:3883466-3883485 | Msa0584420:intron | 10.0% |
| !!! | TTTTTTTTAATCTAATGTGA+AGG | + | chr4_2:3883086-3883105 | Msa0584420:intron | 15.0% |
| !! | TAACAAAAGCAAATATTAAT+TGG | - | chr4_2:3883373-3883392 | None:intergenic | 15.0% |
| !! | TTTATATTCATAATATTCTG+TGG | + | chr4_2:3883498-3883517 | Msa0584420:intron | 15.0% |
| !!! | TTTTTTTTAATCTAATGTGA+AGG | + | chr4_2:3883086-3883105 | Msa0584420:intron | 15.0% |
| !! | TAACAAAAGCAAATATTAAT+TGG | - | chr4_2:3883373-3883392 | None:intergenic | 15.0% |
| !! | TTTATATTCATAATATTCTG+TGG | + | chr4_2:3883498-3883517 | Msa0584420:intron | 15.0% |
| !!! | TTTAAATTTTTAAGTGGCTT+GGG | - | chr4_2:3882420-3882439 | None:intergenic | 20.0% |
| !!! | ATTTAAATTTTTAAGTGGCT+TGG | - | chr4_2:3882421-3882440 | None:intergenic | 20.0% |
| !! | TTTCTCAATATACTAAAGAA+TGG | - | chr4_2:3883023-3883042 | None:intergenic | 20.0% |
| !!! | GAACTGTATATTATTGATTA+GGG | - | chr4_2:3883253-3883272 | None:intergenic | 20.0% |
| !!! | TGAACTGTATATTATTGATT+AGG | - | chr4_2:3883254-3883273 | None:intergenic | 20.0% |
| !!! | GAGTTTGATTTTGAATTTTT+AGG | + | chr4_2:3883648-3883667 | Msa0584420:CDS | 20.0% |
| !!! | TTTAAATTTTTAAGTGGCTT+GGG | - | chr4_2:3882420-3882439 | None:intergenic | 20.0% |
| !!! | ATTTAAATTTTTAAGTGGCT+TGG | - | chr4_2:3882421-3882440 | None:intergenic | 20.0% |
| !! | TTTCTCAATATACTAAAGAA+TGG | - | chr4_2:3883023-3883042 | None:intergenic | 20.0% |
| !!! | GAACTGTATATTATTGATTA+GGG | - | chr4_2:3883253-3883272 | None:intergenic | 20.0% |
| !!! | TGAACTGTATATTATTGATT+AGG | - | chr4_2:3883254-3883273 | None:intergenic | 20.0% |
| !!! | GAGTTTGATTTTGAATTTTT+AGG | + | chr4_2:3883648-3883667 | Msa0584420:CDS | 20.0% |
| ! | ATGATGTGTCTATTGAATTA+TGG | + | chr4_2:3882379-3882398 | Msa0584420:five_prime_UTR | 25.0% |
| ! | AAATGTCTTCAAAAATGTGT+TGG | + | chr4_2:3882533-3882552 | Msa0584420:exon | 25.0% |
| !!! | TCAAAAATGTGTTGGTTTTT+TGG | + | chr4_2:3882541-3882560 | Msa0584420:CDS | 25.0% |
| ! | TTGAAAAAGTTCATCAAACT+TGG | - | chr4_2:3882611-3882630 | None:intergenic | 25.0% |
| !! | AGTTATCAAGTTTGAGTTTA+AGG | - | chr4_2:3882675-3882694 | None:intergenic | 25.0% |
| ! | AGAGTTGTGAAAAATAACTA+GGG | - | chr4_2:3882744-3882763 | None:intergenic | 25.0% |
| ! | TAGAGTTGTGAAAAATAACT+AGG | - | chr4_2:3882745-3882764 | None:intergenic | 25.0% |
| !! | TATTTTTCACAACTCTATCA+AGG | + | chr4_2:3882748-3882767 | Msa0584420:intron | 25.0% |
| ! | TTGATTAAATAACAATGGCA+TGG | + | chr4_2:3882843-3882862 | Msa0584420:intron | 25.0% |
| !! | CCATTGATGACAAAATTAAA+GGG | - | chr4_2:3883211-3883230 | None:intergenic | 25.0% |
| !! | TCCATTGATGACAAAATTAA+AGG | - | chr4_2:3883212-3883231 | None:intergenic | 25.0% |
| ! | CTGTCATATAATAATAACTG+TGG | - | chr4_2:3883339-3883358 | None:intergenic | 25.0% |
| !!! | TTTTTGACTCATTTGATGAT+TGG | - | chr4_2:3883415-3883434 | None:intergenic | 25.0% |
| ! | TGTATGTGTATGAATTATTG+AGG | + | chr4_2:3883544-3883563 | Msa0584420:intron | 25.0% |
| ! | ATGATGTGTCTATTGAATTA+TGG | + | chr4_2:3882379-3882398 | Msa0584420:five_prime_UTR | 25.0% |
| ! | AAATGTCTTCAAAAATGTGT+TGG | + | chr4_2:3882533-3882552 | Msa0584420:exon | 25.0% |
| !!! | TCAAAAATGTGTTGGTTTTT+TGG | + | chr4_2:3882541-3882560 | Msa0584420:CDS | 25.0% |
| ! | TTGAAAAAGTTCATCAAACT+TGG | - | chr4_2:3882611-3882630 | None:intergenic | 25.0% |
| !! | AGTTATCAAGTTTGAGTTTA+AGG | - | chr4_2:3882675-3882694 | None:intergenic | 25.0% |
| ! | AGAGTTGTGAAAAATAACTA+GGG | - | chr4_2:3882744-3882763 | None:intergenic | 25.0% |
| ! | TAGAGTTGTGAAAAATAACT+AGG | - | chr4_2:3882745-3882764 | None:intergenic | 25.0% |
| !! | TATTTTTCACAACTCTATCA+AGG | + | chr4_2:3882748-3882767 | Msa0584420:intron | 25.0% |
| ! | TTGATTAAATAACAATGGCA+TGG | + | chr4_2:3882843-3882862 | Msa0584420:intron | 25.0% |
| !! | CCATTGATGACAAAATTAAA+GGG | - | chr4_2:3883211-3883230 | None:intergenic | 25.0% |
| !! | TCCATTGATGACAAAATTAA+AGG | - | chr4_2:3883212-3883231 | None:intergenic | 25.0% |
| ! | CTGTCATATAATAATAACTG+TGG | - | chr4_2:3883339-3883358 | None:intergenic | 25.0% |
| !!! | TTTTTGACTCATTTGATGAT+TGG | - | chr4_2:3883415-3883434 | None:intergenic | 25.0% |
| ! | TGTATGTGTATGAATTATTG+AGG | + | chr4_2:3883544-3883563 | Msa0584420:intron | 25.0% |
| !!! | ATGAACTTTTTCAACCAAGT+TGG | + | chr4_2:3882617-3882636 | Msa0584420:CDS | 30.0% |
| !!! | TGAACTTTTTCAACCAAGTT+GGG | + | chr4_2:3882618-3882637 | Msa0584420:CDS | 30.0% |
| ! | TGTTCAACATTTTCTTCACA+TGG | + | chr4_2:3882777-3882796 | Msa0584420:intron | 30.0% |
| TCCAAAAGCAAGTATATGTT+TGG | + | chr4_2:3882888-3882907 | Msa0584420:CDS | 30.0% | |
| CCAAAAGCAAGTATATGTTT+GGG | + | chr4_2:3882889-3882908 | Msa0584420:CDS | 30.0% | |
| !! | CCCTTTAATTTTGTCATCAA+TGG | + | chr4_2:3883208-3883227 | Msa0584420:intron | 30.0% |
| GCAAATATTAATTGGACAAG+AGG | - | chr4_2:3883365-3883384 | None:intergenic | 30.0% | |
| ! | ATTTGATGATTGGAAAGTAG+GGG | - | chr4_2:3883405-3883424 | None:intergenic | 30.0% |
| ! | CATTTGATGATTGGAAAGTA+GGG | - | chr4_2:3883406-3883425 | None:intergenic | 30.0% |
| ! | TCATTTGATGATTGGAAAGT+AGG | - | chr4_2:3883407-3883426 | None:intergenic | 30.0% |
| ATTCAAAATCAAACTCGTTG+TGG | - | chr4_2:3883644-3883663 | None:intergenic | 30.0% | |
| ACATTTGTTTGCACAGAATA+AGG | - | chr4_2:3883690-3883709 | None:intergenic | 30.0% | |
| CAAACAAATGTGTATGTGAA+TGG | + | chr4_2:3883699-3883718 | Msa0584420:CDS | 30.0% | |
| AATGTGTATGTGAATGGAAT+TGG | + | chr4_2:3883705-3883724 | Msa0584420:CDS | 30.0% | |
| ! | TTCACTCTTACTCTATTTTC+TGG | + | chr4_2:3883775-3883794 | Msa0584420:CDS | 30.0% |
| !!! | ATGAACTTTTTCAACCAAGT+TGG | + | chr4_2:3882617-3882636 | Msa0584420:CDS | 30.0% |
| !!! | TGAACTTTTTCAACCAAGTT+GGG | + | chr4_2:3882618-3882637 | Msa0584420:CDS | 30.0% |
| ! | TGTTCAACATTTTCTTCACA+TGG | + | chr4_2:3882777-3882796 | Msa0584420:intron | 30.0% |
| TCCAAAAGCAAGTATATGTT+TGG | + | chr4_2:3882888-3882907 | Msa0584420:CDS | 30.0% | |
| CCAAAAGCAAGTATATGTTT+GGG | + | chr4_2:3882889-3882908 | Msa0584420:CDS | 30.0% | |
| !! | CCCTTTAATTTTGTCATCAA+TGG | + | chr4_2:3883208-3883227 | Msa0584420:intron | 30.0% |
| GCAAATATTAATTGGACAAG+AGG | - | chr4_2:3883365-3883384 | None:intergenic | 30.0% | |
| ! | ATTTGATGATTGGAAAGTAG+GGG | - | chr4_2:3883405-3883424 | None:intergenic | 30.0% |
| ! | CATTTGATGATTGGAAAGTA+GGG | - | chr4_2:3883406-3883425 | None:intergenic | 30.0% |
| ! | TCATTTGATGATTGGAAAGT+AGG | - | chr4_2:3883407-3883426 | None:intergenic | 30.0% |
| ATTCAAAATCAAACTCGTTG+TGG | - | chr4_2:3883644-3883663 | None:intergenic | 30.0% | |
| ACATTTGTTTGCACAGAATA+AGG | - | chr4_2:3883690-3883709 | None:intergenic | 30.0% | |
| CAAACAAATGTGTATGTGAA+TGG | + | chr4_2:3883699-3883718 | Msa0584420:CDS | 30.0% | |
| AATGTGTATGTGAATGGAAT+TGG | + | chr4_2:3883705-3883724 | Msa0584420:CDS | 30.0% | |
| ! | TTCACTCTTACTCTATTTTC+TGG | + | chr4_2:3883775-3883794 | Msa0584420:CDS | 30.0% |
| ATTCAATAGACACATCATCG+AGG | - | chr4_2:3882377-3882396 | None:intergenic | 35.0% | |
| AAGTTCATCAAACTTGGAAG+AGG | - | chr4_2:3882605-3882624 | None:intergenic | 35.0% | |
| ! | TTTGACCATTTTCTCCATGA+AGG | + | chr4_2:3882643-3882662 | Msa0584420:CDS | 35.0% |
| ! | CTCAAACTTGATAACTCTTC+TGG | + | chr4_2:3882679-3882698 | Msa0584420:CDS | 35.0% |
| AAAATAACTAGGGTTGTGGT+AGG | - | chr4_2:3882734-3882753 | None:intergenic | 35.0% | |
| GTGAAAAATAACTAGGGTTG+TGG | - | chr4_2:3882738-3882757 | None:intergenic | 35.0% | |
| ! | CCCAAACATATACTTGCTTT+TGG | - | chr4_2:3882892-3882911 | None:intergenic | 35.0% |
| ! | ATTATTGATTAGGGTCCAAG+AGG | - | chr4_2:3883244-3883263 | None:intergenic | 35.0% |
| ! | TTTGATGATTGGAAAGTAGG+GGG | - | chr4_2:3883404-3883423 | None:intergenic | 35.0% |
| TGTGATATAGATGTCATCAG+AGG | + | chr4_2:3883611-3883630 | Msa0584420:intron | 35.0% | |
| GTGATATAGATGTCATCAGA+GGG | + | chr4_2:3883612-3883631 | Msa0584420:intron | 35.0% | |
| AAATCAAACTCGTTGTGGTT+TGG | - | chr4_2:3883639-3883658 | None:intergenic | 35.0% | |
| !! | GAATTTTTAGGCAACACAAC+AGG | + | chr4_2:3883660-3883679 | Msa0584420:CDS | 35.0% |
| AAAGGTTAAGTCTTTGCTCA+CGG | - | chr4_2:3883734-3883753 | None:intergenic | 35.0% | |
| AAGAGTGAAAATCCTTGGTA+GGG | - | chr4_2:3883764-3883783 | None:intergenic | 35.0% | |
| TAAGAGTGAAAATCCTTGGT+AGG | - | chr4_2:3883765-3883784 | None:intergenic | 35.0% | |
| AGAGTAAGAGTGAAAATCCT+TGG | - | chr4_2:3883769-3883788 | None:intergenic | 35.0% | |
| ATTCAATAGACACATCATCG+AGG | - | chr4_2:3882377-3882396 | None:intergenic | 35.0% | |
| AAGTTCATCAAACTTGGAAG+AGG | - | chr4_2:3882605-3882624 | None:intergenic | 35.0% | |
| ! | TTTGACCATTTTCTCCATGA+AGG | + | chr4_2:3882643-3882662 | Msa0584420:CDS | 35.0% |
| ! | CTCAAACTTGATAACTCTTC+TGG | + | chr4_2:3882679-3882698 | Msa0584420:CDS | 35.0% |
| AAAATAACTAGGGTTGTGGT+AGG | - | chr4_2:3882734-3882753 | None:intergenic | 35.0% | |
| GTGAAAAATAACTAGGGTTG+TGG | - | chr4_2:3882738-3882757 | None:intergenic | 35.0% | |
| ! | CCCAAACATATACTTGCTTT+TGG | - | chr4_2:3882892-3882911 | None:intergenic | 35.0% |
| ! | ATTATTGATTAGGGTCCAAG+AGG | - | chr4_2:3883244-3883263 | None:intergenic | 35.0% |
| ! | TTTGATGATTGGAAAGTAGG+GGG | - | chr4_2:3883404-3883423 | None:intergenic | 35.0% |
| TGTGATATAGATGTCATCAG+AGG | + | chr4_2:3883611-3883630 | Msa0584420:intron | 35.0% | |
| GTGATATAGATGTCATCAGA+GGG | + | chr4_2:3883612-3883631 | Msa0584420:intron | 35.0% | |
| AAATCAAACTCGTTGTGGTT+TGG | - | chr4_2:3883639-3883658 | None:intergenic | 35.0% | |
| !! | GAATTTTTAGGCAACACAAC+AGG | + | chr4_2:3883660-3883679 | Msa0584420:CDS | 35.0% |
| AAAGGTTAAGTCTTTGCTCA+CGG | - | chr4_2:3883734-3883753 | None:intergenic | 35.0% | |
| AAGAGTGAAAATCCTTGGTA+GGG | - | chr4_2:3883764-3883783 | None:intergenic | 35.0% | |
| TAAGAGTGAAAATCCTTGGT+AGG | - | chr4_2:3883765-3883784 | None:intergenic | 35.0% | |
| AGAGTAAGAGTGAAAATCCT+TGG | - | chr4_2:3883769-3883788 | None:intergenic | 35.0% | |
| ATAAACCCAACAAGCCAAAG+AGG | + | chr4_2:3882460-3882479 | Msa0584420:five_prime_UTR | 40.0% | |
| ! | TTTGAGACACTGAACCTCTT+TGG | - | chr4_2:3882477-3882496 | None:intergenic | 40.0% |
| AAATGGTCAAAAGCCCAACT+TGG | - | chr4_2:3882634-3882653 | None:intergenic | 40.0% | |
| GATCTCCTTCATGGAGAAAA+TGG | - | chr4_2:3882651-3882670 | None:intergenic | 40.0% | |
| GTTTAAGGAGATCTCCTTCA+TGG | - | chr4_2:3882660-3882679 | None:intergenic | 40.0% | |
| !! | ATCCAGCTTAAGCTTGTTGA+AGG | + | chr4_2:3882921-3882940 | Msa0584420:CDS | 40.0% |
| GTGAGCAAAGACTTAACCTT+TGG | + | chr4_2:3883733-3883752 | Msa0584420:CDS | 40.0% | |
| ATAAACCCAACAAGCCAAAG+AGG | + | chr4_2:3882460-3882479 | Msa0584420:five_prime_UTR | 40.0% | |
| ! | TTTGAGACACTGAACCTCTT+TGG | - | chr4_2:3882477-3882496 | None:intergenic | 40.0% |
| AAATGGTCAAAAGCCCAACT+TGG | - | chr4_2:3882634-3882653 | None:intergenic | 40.0% | |
| GATCTCCTTCATGGAGAAAA+TGG | - | chr4_2:3882651-3882670 | None:intergenic | 40.0% | |
| GTTTAAGGAGATCTCCTTCA+TGG | - | chr4_2:3882660-3882679 | None:intergenic | 40.0% | |
| !! | ATCCAGCTTAAGCTTGTTGA+AGG | + | chr4_2:3882921-3882940 | Msa0584420:CDS | 40.0% |
| GTGAGCAAAGACTTAACCTT+TGG | + | chr4_2:3883733-3883752 | Msa0584420:CDS | 40.0% | |
| !! | CTGAACCTCTTTGGCTTGTT+GGG | - | chr4_2:3882468-3882487 | None:intergenic | 45.0% |
| !! | ACTGAACCTCTTTGGCTTGT+TGG | - | chr4_2:3882469-3882488 | None:intergenic | 45.0% |
| TAACAATGGCATGGACCTTC+AGG | + | chr4_2:3882852-3882871 | Msa0584420:intron | 45.0% | |
| GATACAAAACCAGCACCTGA+AGG | - | chr4_2:3882870-3882889 | None:intergenic | 45.0% | |
| CACCTTCAACAAGCTTAAGC+TGG | - | chr4_2:3882926-3882945 | None:intergenic | 45.0% | |
| AATGGAGATGCTCTACCTCT+TGG | + | chr4_2:3883226-3883245 | Msa0584420:intron | 45.0% | |
| !! | CTGAACCTCTTTGGCTTGTT+GGG | - | chr4_2:3882468-3882487 | None:intergenic | 45.0% |
| !! | ACTGAACCTCTTTGGCTTGT+TGG | - | chr4_2:3882469-3882488 | None:intergenic | 45.0% |
| TAACAATGGCATGGACCTTC+AGG | + | chr4_2:3882852-3882871 | Msa0584420:intron | 45.0% | |
| GATACAAAACCAGCACCTGA+AGG | - | chr4_2:3882870-3882889 | None:intergenic | 45.0% | |
| CACCTTCAACAAGCTTAAGC+TGG | - | chr4_2:3882926-3882945 | None:intergenic | 45.0% | |
| AATGGAGATGCTCTACCTCT+TGG | + | chr4_2:3883226-3883245 | Msa0584420:intron | 45.0% | |
| !!! | AATTTTTTACATTTATATTT+TGG | + | chr4_2:3883287-3883306 | Msa0584420:intron | 5.0% |
| !!! | AATTTTTTACATTTATATTT+TGG | + | chr4_2:3883287-3883306 | Msa0584420:intron | 5.0% |
| CTTGTTGAAGGTGACTCAGC+TGG | + | chr4_2:3882933-3882952 | Msa0584420:CDS | 50.0% | |
| CCTTGGTAGGGTCAAACCAA+AGG | - | chr4_2:3883752-3883771 | None:intergenic | 50.0% | |
| !! | CCTTTGGTTTGACCCTACCA+AGG | + | chr4_2:3883749-3883768 | Msa0584420:CDS | 50.0% |
| CTTGTTGAAGGTGACTCAGC+TGG | + | chr4_2:3882933-3882952 | Msa0584420:CDS | 50.0% | |
| CCTTGGTAGGGTCAAACCAA+AGG | - | chr4_2:3883752-3883771 | None:intergenic | 50.0% | |
| !! | CCTTTGGTTTGACCCTACCA+AGG | + | chr4_2:3883749-3883768 | Msa0584420:CDS | 50.0% |
| TGGCATGGACCTTCAGGTGC+TGG | + | chr4_2:3882858-3882877 | Msa0584420:intron | 60.0% | |
| TGGCATGGACCTTCAGGTGC+TGG | + | chr4_2:3882858-3882877 | Msa0584420:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 3882360 | 3883818 | 3882360 | ID=Msa0584420;Name=Msa0584420 |
| chr4_2 | mRNA | 3882360 | 3883818 | 3882360 | ID=Msa0584420-mRNA-1;Parent=Msa0584420;Name=Msa0584420-mRNA-1;_AED=0.25;_eAED=0.25;_QI=175|1|0.66|1|1|1|3|0|154 |
| chr4_2 | exon | 3882360 | 3882700 | 3882360 | ID=Msa0584420-mRNA-1:exon:1054;Parent=Msa0584420-mRNA-1 |
| chr4_2 | exon | 3882874 | 3882974 | 3882874 | ID=Msa0584420-mRNA-1:exon:1055;Parent=Msa0584420-mRNA-1 |
| chr4_2 | exon | 3883621 | 3883818 | 3883621 | ID=Msa0584420-mRNA-1:exon:1056;Parent=Msa0584420-mRNA-1 |
| chr4_2 | five_prime_UTR | 3882360 | 3882534 | 3882360 | ID=Msa0584420-mRNA-1:five_prime_utr;Parent=Msa0584420-mRNA-1 |
| chr4_2 | CDS | 3882535 | 3882700 | 3882535 | ID=Msa0584420-mRNA-1:cds;Parent=Msa0584420-mRNA-1 |
| chr4_2 | CDS | 3882874 | 3882974 | 3882874 | ID=Msa0584420-mRNA-1:cds;Parent=Msa0584420-mRNA-1 |
| chr4_2 | CDS | 3883621 | 3883818 | 3883621 | ID=Msa0584420-mRNA-1:cds;Parent=Msa0584420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
