AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0906720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0906720 MtrunA17_Chr6g0454691 96.809 94 3 0 8 101 55 148 7.98e-64 189
Msa0906720 MtrunA17_Chr6g0454651 93.103 87 6 0 15 101 1 87 4.58e-55 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0906720 AT5G39210.1 64.894 94 33 0 8 101 63 156 1.39e-41 134

Find 31 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAACTTTGGTTTCTTAT+TGG 0.236348 6_2:-5364961 Msa0906720:five_prime_UTR
CATTCATGTTTATGAAGTTT+TGG 0.260089 6_2:+5364937 None:intergenic
TGAAAGAGTGGCTCACAAAT+TGG 0.283330 6_2:-5363166 Msa0906720:CDS
CAAACATGTTATTTACAGTT+TGG 0.325891 6_2:-5362907 Msa0906720:three_prime_UTR
AATTCATACGAGCTACTATA+TGG 0.345183 6_2:-5364985 Msa0906720:five_prime_UTR
GGATGAGAGGTTTGTGTCAG+AGG 0.390149 6_2:-5363207 Msa0906720:CDS
CTTGAAATTGATGGAGAAGT+TGG 0.397574 6_2:-5363059 Msa0906720:CDS
ATCAATTTCAAGTTCACAAA+AGG 0.404929 6_2:+5363070 None:intergenic
TACTATATGGATGATAACTT+TGG 0.434572 6_2:-5364972 Msa0906720:five_prime_UTR
AAATAGTTTAATTGAACACT+TGG 0.452882 6_2:-5362882 Msa0906720:three_prime_UTR
GTTTCATATCTTGCTAGATC+AGG 0.459128 6_2:+5363125 None:intergenic
TCAGTGGTATGAAGTTCGTT+TGG 0.464080 6_2:-5363030 Msa0906720:CDS
AATGTTCTAAATAACACAAA+TGG 0.505543 6_2:+5362950 None:intergenic
ACAAACCTCTCATCCTTCCC+TGG 0.513237 6_2:+5363215 None:intergenic
GAAAGAAACAGCATCATCAA+TGG 0.526687 6_2:+5363103 None:intergenic
TGAAAGATACTTTGAAAGAG+TGG 0.529707 6_2:-5363178 Msa0906720:CDS
TCAGGAGGAAGAGTCTTGCC+AGG 0.535490 6_2:+5363143 None:intergenic
GAGTGGCTCACAAATTGGCC+TGG 0.539314 6_2:-5363161 Msa0906720:CDS
CAACTATGACAATCACAAGT+TGG 0.543984 6_2:+5362978 None:intergenic
TCATATCTTGCTAGATCAGG+AGG 0.578859 6_2:+5363128 None:intergenic
ACTTGTGATTGTCATAGTTG+AGG 0.585919 6_2:-5362975 Msa0906720:three_prime_UTR
TAGAACCAGGGAAGGATGAG+AGG 0.587726 6_2:-5363220 Msa0906720:CDS
TTGTGTCAGTTACAAGAGAA+CGG 0.594667 6_2:+5362927 None:intergenic
AATTGATGGAGAAGTTGGAT+CGG 0.615121 6_2:-5363054 Msa0906720:CDS
ACTTATGTACTATTAGAACC+AGG 0.616078 6_2:-5363233 Msa0906720:CDS
TGTACTATTAGAACCAGGGA+AGG 0.630431 6_2:-5363228 Msa0906720:CDS
GAGAAGTTGGATCGGTTCAG+TGG 0.633875 6_2:-5363046 Msa0906720:CDS
CACAAAATAATTAATAACCA+TGG 0.640960 6_2:-5364906 Msa0906720:five_prime_UTR
CTTATGTACTATTAGAACCA+GGG 0.664769 6_2:-5363232 Msa0906720:CDS
AGGCTGCAAAACAACTACCA+TGG 0.682488 6_2:+5364889 None:intergenic
ACTCTAACATTGAAACCATG+AGG 0.705525 6_2:+5364869 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCTTATATTTAGTTTTA+AGG - chr6_2:5363654-5363673 Msa0906720:intron 10.0%
!!! GTTAGTTTTTTATTTATTTT+TGG + chr6_2:5364417-5364436 None:intergenic 10.0%
!!! ATTTCTTATATTTAGTTTTA+AGG - chr6_2:5363654-5363673 Msa0906720:intron 10.0%
!!! GTTAGTTTTTTATTTATTTT+TGG + chr6_2:5364417-5364436 None:intergenic 10.0%
!!! AAACATTACATTATTTTTAG+AGG - chr6_2:5363064-5363083 Msa0906720:CDS 15.0%
!!! AACATTACATTATTTTTAGA+GGG - chr6_2:5363065-5363084 Msa0906720:CDS 15.0%
!! AATAAATAAATAAATCAACC+AGG - chr6_2:5363785-5363804 Msa0906720:intron 15.0%
!!! AAACATTACATTATTTTTAG+AGG - chr6_2:5363064-5363083 Msa0906720:CDS 15.0%
!!! AACATTACATTATTTTTAGA+GGG - chr6_2:5363065-5363084 Msa0906720:CDS 15.0%
!! AATAAATAAATAAATCAACC+AGG - chr6_2:5363785-5363804 Msa0906720:intron 15.0%
!! CACAAAATAATTAATAACCA+TGG - chr6_2:5362913-5362932 Msa0906720:three_prime_UTR 20.0%
!! TATTATCAATACTAGTAAGT+AGG - chr6_2:5363111-5363130 Msa0906720:CDS 20.0%
!! ATTATCAATACTAGTAAGTA+GGG - chr6_2:5363112-5363131 Msa0906720:CDS 20.0%
!! AAGAACTAAAACATTGAATT+AGG + chr6_2:5363513-5363532 None:intergenic 20.0%
!!! GTTTTTTGAAAACATACTAT+AGG + chr6_2:5363624-5363643 None:intergenic 20.0%
!!! TATTCTTGTGATTAGTTAAT+AGG - chr6_2:5363815-5363834 Msa0906720:intron 20.0%
!!! ATTCTTGTGATTAGTTAATA+GGG - chr6_2:5363816-5363835 Msa0906720:intron 20.0%
!! TTAGTCAAAACTAATTTACT+CGG - chr6_2:5364182-5364201 Msa0906720:intron 20.0%
!!! AATGTTCTAAATAACACAAA+TGG + chr6_2:5364872-5364891 None:intergenic 20.0%
!! AAATAGTTTAATTGAACACT+TGG - chr6_2:5364937-5364956 Msa0906720:five_prime_UTR 20.0%
!! CACAAAATAATTAATAACCA+TGG - chr6_2:5362913-5362932 Msa0906720:three_prime_UTR 20.0%
!! TATTATCAATACTAGTAAGT+AGG - chr6_2:5363111-5363130 Msa0906720:CDS 20.0%
!! ATTATCAATACTAGTAAGTA+GGG - chr6_2:5363112-5363131 Msa0906720:CDS 20.0%
!! AAGAACTAAAACATTGAATT+AGG + chr6_2:5363513-5363532 None:intergenic 20.0%
!!! GTTTTTTGAAAACATACTAT+AGG + chr6_2:5363624-5363643 None:intergenic 20.0%
!!! TATTCTTGTGATTAGTTAAT+AGG - chr6_2:5363815-5363834 Msa0906720:intron 20.0%
!!! ATTCTTGTGATTAGTTAATA+GGG - chr6_2:5363816-5363835 Msa0906720:intron 20.0%
!! TTAGTCAAAACTAATTTACT+CGG - chr6_2:5364182-5364201 Msa0906720:intron 20.0%
!!! AATGTTCTAAATAACACAAA+TGG + chr6_2:5364872-5364891 None:intergenic 20.0%
!! AAATAGTTTAATTGAACACT+TGG - chr6_2:5364937-5364956 Msa0906720:five_prime_UTR 20.0%
! TACTATATGGATGATAACTT+TGG - chr6_2:5362847-5362866 Msa0906720:three_prime_UTR 25.0%
!! TGATAACTTTGGTTTCTTAT+TGG - chr6_2:5362858-5362877 Msa0906720:three_prime_UTR 25.0%
!! CATTCATGTTTATGAAGTTT+TGG + chr6_2:5362885-5362904 None:intergenic 25.0%
! CATTTGTATAATTCCTTAGA+TGG - chr6_2:5363139-5363158 Msa0906720:CDS 25.0%
! TGAATGATTGTAAAATAGAG+TGG - chr6_2:5363236-5363255 Msa0906720:CDS 25.0%
! TAAACAATTGACCATAATCT+TGG - chr6_2:5363340-5363359 Msa0906720:intron 25.0%
! TATACTTCATACCAAGATTA+TGG + chr6_2:5363354-5363373 None:intergenic 25.0%
! AAATAGTACAAGATACACAA+TGG - chr6_2:5364130-5364149 Msa0906720:intron 25.0%
!!! GTTTTGACTAATCATATGTT+TGG + chr6_2:5364173-5364192 None:intergenic 25.0%
! CAAGTTAAATGTGATAGTAA+CGG - chr6_2:5364233-5364252 Msa0906720:intron 25.0%
! AAGTTAAATGTGATAGTAAC+GGG - chr6_2:5364234-5364253 Msa0906720:intron 25.0%
!!! ATCAATTTCAAGTTCACAAA+AGG + chr6_2:5364752-5364771 None:intergenic 25.0%
!! TTTTGTGAACTTGAAATTGA+TGG - chr6_2:5364751-5364770 Msa0906720:intron 25.0%
!! CAAACATGTTATTTACAGTT+TGG - chr6_2:5364912-5364931 Msa0906720:five_prime_UTR 25.0%
! TACTATATGGATGATAACTT+TGG - chr6_2:5362847-5362866 Msa0906720:three_prime_UTR 25.0%
!! TGATAACTTTGGTTTCTTAT+TGG - chr6_2:5362858-5362877 Msa0906720:three_prime_UTR 25.0%
!! CATTCATGTTTATGAAGTTT+TGG + chr6_2:5362885-5362904 None:intergenic 25.0%
! CATTTGTATAATTCCTTAGA+TGG - chr6_2:5363139-5363158 Msa0906720:CDS 25.0%
! TGAATGATTGTAAAATAGAG+TGG - chr6_2:5363236-5363255 Msa0906720:CDS 25.0%
! TAAACAATTGACCATAATCT+TGG - chr6_2:5363340-5363359 Msa0906720:intron 25.0%
! TATACTTCATACCAAGATTA+TGG + chr6_2:5363354-5363373 None:intergenic 25.0%
! AAATAGTACAAGATACACAA+TGG - chr6_2:5364130-5364149 Msa0906720:intron 25.0%
!!! GTTTTGACTAATCATATGTT+TGG + chr6_2:5364173-5364192 None:intergenic 25.0%
! CAAGTTAAATGTGATAGTAA+CGG - chr6_2:5364233-5364252 Msa0906720:intron 25.0%
! AAGTTAAATGTGATAGTAAC+GGG - chr6_2:5364234-5364253 Msa0906720:intron 25.0%
!!! ATCAATTTCAAGTTCACAAA+AGG + chr6_2:5364752-5364771 None:intergenic 25.0%
!! TTTTGTGAACTTGAAATTGA+TGG - chr6_2:5364751-5364770 Msa0906720:intron 25.0%
!! CAAACATGTTATTTACAGTT+TGG - chr6_2:5364912-5364931 Msa0906720:five_prime_UTR 25.0%
AATTCATACGAGCTACTATA+TGG - chr6_2:5362834-5362853 Msa0906720:three_prime_UTR 30.0%
TAAGGCAGAAAATTCCTATA+TGG + chr6_2:5363179-5363198 None:intergenic 30.0%
!! AATTTTCTGCCTTAACTTGA+TGG - chr6_2:5363185-5363204 Msa0906720:CDS 30.0%
TGTTTCTTTCCATCAAGTTA+AGG + chr6_2:5363197-5363216 None:intergenic 30.0%
CTATTGCAGAAGTAAAACAA+AGG - chr6_2:5363564-5363583 Msa0906720:intron 30.0%
! GATTAGTTAATAGGGTTCTT+TGG - chr6_2:5363824-5363843 Msa0906720:intron 30.0%
!! CTTAACTTTCTCTGAAATCA+GGG + chr6_2:5363865-5363884 None:intergenic 30.0%
TGTGTGTTTGGAAAAAAGTT+TGG + chr6_2:5364012-5364031 None:intergenic 30.0%
TGCTCCTAAGAAATGTTATA+TGG - chr6_2:5364210-5364229 Msa0906720:intron 30.0%
CTTGCCATATAACATTTCTT+AGG + chr6_2:5364217-5364236 None:intergenic 30.0%
CAGTCGAGATTCAAATATTA+GGG + chr6_2:5364320-5364339 None:intergenic 30.0%
CTAATATTTGAATCTCGACT+GGG - chr6_2:5364319-5364338 Msa0906720:intron 30.0%
ACTTATGTACTATTAGAACC+AGG - chr6_2:5364586-5364605 Msa0906720:intron 30.0%
CTTATGTACTATTAGAACCA+GGG - chr6_2:5364587-5364606 Msa0906720:intron 30.0%
! TGAAAGATACTTTGAAAGAG+TGG - chr6_2:5364641-5364660 Msa0906720:intron 30.0%
AATTCATACGAGCTACTATA+TGG - chr6_2:5362834-5362853 Msa0906720:three_prime_UTR 30.0%
TAAGGCAGAAAATTCCTATA+TGG + chr6_2:5363179-5363198 None:intergenic 30.0%
!! AATTTTCTGCCTTAACTTGA+TGG - chr6_2:5363185-5363204 Msa0906720:CDS 30.0%
TGTTTCTTTCCATCAAGTTA+AGG + chr6_2:5363197-5363216 None:intergenic 30.0%
CTATTGCAGAAGTAAAACAA+AGG - chr6_2:5363564-5363583 Msa0906720:intron 30.0%
! GATTAGTTAATAGGGTTCTT+TGG - chr6_2:5363824-5363843 Msa0906720:intron 30.0%
!! CTTAACTTTCTCTGAAATCA+GGG + chr6_2:5363865-5363884 None:intergenic 30.0%
TGTGTGTTTGGAAAAAAGTT+TGG + chr6_2:5364012-5364031 None:intergenic 30.0%
TGCTCCTAAGAAATGTTATA+TGG - chr6_2:5364210-5364229 Msa0906720:intron 30.0%
CTTGCCATATAACATTTCTT+AGG + chr6_2:5364217-5364236 None:intergenic 30.0%
CAGTCGAGATTCAAATATTA+GGG + chr6_2:5364320-5364339 None:intergenic 30.0%
CTAATATTTGAATCTCGACT+GGG - chr6_2:5364319-5364338 Msa0906720:intron 30.0%
ACTTATGTACTATTAGAACC+AGG - chr6_2:5364586-5364605 Msa0906720:intron 30.0%
CTTATGTACTATTAGAACCA+GGG - chr6_2:5364587-5364606 Msa0906720:intron 30.0%
! TGAAAGATACTTTGAAAGAG+TGG - chr6_2:5364641-5364660 Msa0906720:intron 30.0%
ACTCTAACATTGAAACCATG+AGG + chr6_2:5362953-5362972 None:intergenic 35.0%
!! CTCCACTGTAAGCTATTTTA+TGG - chr6_2:5362980-5362999 Msa0906720:three_prime_UTR 35.0%
GCTCAAAAGCTGAAAAGATA+AGG + chr6_2:5363006-5363025 None:intergenic 35.0%
ATTCCTTAGATGGCCAAAAT+TGG - chr6_2:5363149-5363168 Msa0906720:CDS 35.0%
! CCTATATGGTAAGCCAATTT+TGG + chr6_2:5363165-5363184 None:intergenic 35.0%
! CCAAAATTGGCTTACCATAT+AGG - chr6_2:5363162-5363181 Msa0906720:CDS 35.0%
AGCCATAACATTGAGGTTAT+TGG - chr6_2:5363300-5363319 Msa0906720:intron 35.0%
CTCCAATAACCTCAATGTTA+TGG + chr6_2:5363305-5363324 None:intergenic 35.0%
GGTGATGTTATATGTATTGC+TGG + chr6_2:5363487-5363506 None:intergenic 35.0%
GCAATACATATAACATCACC+AGG - chr6_2:5363487-5363506 Msa0906720:intron 35.0%
CTAAAACATTGAATTAGGCC+TGG + chr6_2:5363508-5363527 None:intergenic 35.0%
AGATTTCAGAAGATACTGCA+GGG + chr6_2:5363596-5363615 None:intergenic 35.0%
!! GCTTAACTTTCTCTGAAATC+AGG + chr6_2:5363866-5363885 None:intergenic 35.0%
GAGAAAGTTAAGCATGTGTT+TGG - chr6_2:5363873-5363892 Msa0906720:intron 35.0%
AGTTAAGCATGTGTTTGGTA+TGG - chr6_2:5363878-5363897 Msa0906720:intron 35.0%
AAACATGCTAAGTGTGTGTT+TGG + chr6_2:5364024-5364043 None:intergenic 35.0%
AAACACACACTTAGCATGTT+TGG - chr6_2:5364023-5364042 Msa0906720:intron 35.0%
TTGACGTGGAAGATTTGATT+TGG - chr6_2:5364085-5364104 Msa0906720:intron 35.0%
! TTGGAGCTTTGATGAATTTG+CGG - chr6_2:5364104-5364123 Msa0906720:intron 35.0%
CCAGTCGAGATTCAAATATT+AGG + chr6_2:5364321-5364340 None:intergenic 35.0%
CCTAATATTTGAATCTCGAC+TGG - chr6_2:5364318-5364337 Msa0906720:intron 35.0%
! CACTGAACTTTGTTTGTAAC+AGG - chr6_2:5364522-5364541 Msa0906720:intron 35.0%
! TGTAACAGGTTTTTGCAATG+AGG - chr6_2:5364536-5364555 Msa0906720:intron 35.0%
! TTTTTGCAATGAGGAGAAGA+AGG - chr6_2:5364545-5364564 Msa0906720:intron 35.0%
! TTTTGCAATGAGGAGAAGAA+GGG - chr6_2:5364546-5364565 Msa0906720:intron 35.0%
GTTTCATATCTTGCTAGATC+AGG + chr6_2:5364697-5364716 None:intergenic 35.0%
GAAAGAAACAGCATCATCAA+TGG + chr6_2:5364719-5364738 None:intergenic 35.0%
CTTGAAATTGATGGAGAAGT+TGG - chr6_2:5364760-5364779 Msa0906720:intron 35.0%
AATTGATGGAGAAGTTGGAT+CGG - chr6_2:5364765-5364784 Msa0906720:intron 35.0%
CAACTATGACAATCACAAGT+TGG + chr6_2:5364844-5364863 None:intergenic 35.0%
ACTTGTGATTGTCATAGTTG+AGG - chr6_2:5364844-5364863 Msa0906720:intron 35.0%
TTGTGTCAGTTACAAGAGAA+CGG + chr6_2:5364895-5364914 None:intergenic 35.0%
ACTCTAACATTGAAACCATG+AGG + chr6_2:5362953-5362972 None:intergenic 35.0%
!! CTCCACTGTAAGCTATTTTA+TGG - chr6_2:5362980-5362999 Msa0906720:three_prime_UTR 35.0%
GCTCAAAAGCTGAAAAGATA+AGG + chr6_2:5363006-5363025 None:intergenic 35.0%
ATTCCTTAGATGGCCAAAAT+TGG - chr6_2:5363149-5363168 Msa0906720:CDS 35.0%
! CCTATATGGTAAGCCAATTT+TGG + chr6_2:5363165-5363184 None:intergenic 35.0%
! CCAAAATTGGCTTACCATAT+AGG - chr6_2:5363162-5363181 Msa0906720:CDS 35.0%
AGCCATAACATTGAGGTTAT+TGG - chr6_2:5363300-5363319 Msa0906720:intron 35.0%
CTCCAATAACCTCAATGTTA+TGG + chr6_2:5363305-5363324 None:intergenic 35.0%
GGTGATGTTATATGTATTGC+TGG + chr6_2:5363487-5363506 None:intergenic 35.0%
GCAATACATATAACATCACC+AGG - chr6_2:5363487-5363506 Msa0906720:intron 35.0%
CTAAAACATTGAATTAGGCC+TGG + chr6_2:5363508-5363527 None:intergenic 35.0%
AGATTTCAGAAGATACTGCA+GGG + chr6_2:5363596-5363615 None:intergenic 35.0%
!! GCTTAACTTTCTCTGAAATC+AGG + chr6_2:5363866-5363885 None:intergenic 35.0%
GAGAAAGTTAAGCATGTGTT+TGG - chr6_2:5363873-5363892 Msa0906720:intron 35.0%
AGTTAAGCATGTGTTTGGTA+TGG - chr6_2:5363878-5363897 Msa0906720:intron 35.0%
AAACATGCTAAGTGTGTGTT+TGG + chr6_2:5364024-5364043 None:intergenic 35.0%
AAACACACACTTAGCATGTT+TGG - chr6_2:5364023-5364042 Msa0906720:intron 35.0%
TTGACGTGGAAGATTTGATT+TGG - chr6_2:5364085-5364104 Msa0906720:intron 35.0%
! TTGGAGCTTTGATGAATTTG+CGG - chr6_2:5364104-5364123 Msa0906720:intron 35.0%
CCAGTCGAGATTCAAATATT+AGG + chr6_2:5364321-5364340 None:intergenic 35.0%
CCTAATATTTGAATCTCGAC+TGG - chr6_2:5364318-5364337 Msa0906720:intron 35.0%
! CACTGAACTTTGTTTGTAAC+AGG - chr6_2:5364522-5364541 Msa0906720:intron 35.0%
! TGTAACAGGTTTTTGCAATG+AGG - chr6_2:5364536-5364555 Msa0906720:intron 35.0%
! TTTTTGCAATGAGGAGAAGA+AGG - chr6_2:5364545-5364564 Msa0906720:intron 35.0%
! TTTTGCAATGAGGAGAAGAA+GGG - chr6_2:5364546-5364565 Msa0906720:intron 35.0%
GTTTCATATCTTGCTAGATC+AGG + chr6_2:5364697-5364716 None:intergenic 35.0%
GAAAGAAACAGCATCATCAA+TGG + chr6_2:5364719-5364738 None:intergenic 35.0%
CTTGAAATTGATGGAGAAGT+TGG - chr6_2:5364760-5364779 Msa0906720:intron 35.0%
AATTGATGGAGAAGTTGGAT+CGG - chr6_2:5364765-5364784 Msa0906720:intron 35.0%
CAACTATGACAATCACAAGT+TGG + chr6_2:5364844-5364863 None:intergenic 35.0%
ACTTGTGATTGTCATAGTTG+AGG - chr6_2:5364844-5364863 Msa0906720:intron 35.0%
TTGTGTCAGTTACAAGAGAA+CGG + chr6_2:5364895-5364914 None:intergenic 35.0%
GGCCATAAAATAGCTTACAG+TGG + chr6_2:5362985-5363004 None:intergenic 40.0%
!! AAGCCAATTTTGGCCATCTA+AGG + chr6_2:5363155-5363174 None:intergenic 40.0%
! TGTTATGGCTGCATTTGCTA+TGG + chr6_2:5363290-5363309 None:intergenic 40.0%
CAAATGCAGCCATAACATTG+AGG - chr6_2:5363293-5363312 Msa0906720:intron 40.0%
GTATTGCTGGATTCTGCATA+TGG + chr6_2:5363474-5363493 None:intergenic 40.0%
GAGATTTCAGAAGATACTGC+AGG + chr6_2:5363597-5363616 None:intergenic 40.0%
TCACAAGAATACTAAGAGCC+TGG + chr6_2:5363806-5363825 None:intergenic 40.0%
!! ACTTTCTCTGAAATCAGGGT+TGG + chr6_2:5363861-5363880 None:intergenic 40.0%
CGTTGGAACTTGCAAAATCA+CGG - chr6_2:5363901-5363920 Msa0906720:intron 40.0%
TCACGGTGGAAAATCAAGTT+TGG - chr6_2:5363918-5363937 Msa0906720:intron 40.0%
CACGGTGGAAAATCAAGTTT+GGG - chr6_2:5363919-5363938 Msa0906720:intron 40.0%
AATGCACTTTCACCGTGATT+TGG + chr6_2:5363970-5363989 None:intergenic 40.0%
! AAATCACGGTGAAAGTGCAT+TGG - chr6_2:5363969-5363988 Msa0906720:intron 40.0%
! AATCACGGTGAAAGTGCATT+GGG - chr6_2:5363970-5363989 Msa0906720:intron 40.0%
!! AGTGCATTGGGAATTGGTTT+TGG - chr6_2:5363982-5364001 Msa0906720:intron 40.0%
!!! GTGCATTGGGAATTGGTTTT+GGG - chr6_2:5363983-5364002 Msa0906720:intron 40.0%
!! ACTTAGCATGTTTGGTTCTG+CGG - chr6_2:5364031-5364050 Msa0906720:intron 40.0%
CGATGAAAATCATGTTGACG+TGG - chr6_2:5364071-5364090 Msa0906720:intron 40.0%
GCACAGTTGGATAATAAACG+CGG + chr6_2:5364353-5364372 None:intergenic 40.0%
TATCCAACTGTGCCTCAAAT+AGG - chr6_2:5364360-5364379 Msa0906720:intron 40.0%
! AATCCTATTTGAGGCACAGT+TGG + chr6_2:5364366-5364385 None:intergenic 40.0%
ACGAGAGGTAATCCTATTTG+AGG + chr6_2:5364375-5364394 None:intergenic 40.0%
AATAGGATTACCTCTCGTGA+AGG - chr6_2:5364377-5364396 Msa0906720:intron 40.0%
ATAGGATTACCTCTCGTGAA+GGG - chr6_2:5364378-5364397 Msa0906720:intron 40.0%
TGTACTATTAGAACCAGGGA+AGG - chr6_2:5364591-5364610 Msa0906720:intron 40.0%
TGAAAGAGTGGCTCACAAAT+TGG - chr6_2:5364653-5364672 Msa0906720:intron 40.0%
TCATATCTTGCTAGATCAGG+AGG + chr6_2:5364694-5364713 None:intergenic 40.0%
TCAGTGGTATGAAGTTCGTT+TGG - chr6_2:5364789-5364808 Msa0906720:intron 40.0%
GGCCATAAAATAGCTTACAG+TGG + chr6_2:5362985-5363004 None:intergenic 40.0%
!! AAGCCAATTTTGGCCATCTA+AGG + chr6_2:5363155-5363174 None:intergenic 40.0%
! TGTTATGGCTGCATTTGCTA+TGG + chr6_2:5363290-5363309 None:intergenic 40.0%
CAAATGCAGCCATAACATTG+AGG - chr6_2:5363293-5363312 Msa0906720:intron 40.0%
GTATTGCTGGATTCTGCATA+TGG + chr6_2:5363474-5363493 None:intergenic 40.0%
GAGATTTCAGAAGATACTGC+AGG + chr6_2:5363597-5363616 None:intergenic 40.0%
TCACAAGAATACTAAGAGCC+TGG + chr6_2:5363806-5363825 None:intergenic 40.0%
!! ACTTTCTCTGAAATCAGGGT+TGG + chr6_2:5363861-5363880 None:intergenic 40.0%
CGTTGGAACTTGCAAAATCA+CGG - chr6_2:5363901-5363920 Msa0906720:intron 40.0%
TCACGGTGGAAAATCAAGTT+TGG - chr6_2:5363918-5363937 Msa0906720:intron 40.0%
CACGGTGGAAAATCAAGTTT+GGG - chr6_2:5363919-5363938 Msa0906720:intron 40.0%
AATGCACTTTCACCGTGATT+TGG + chr6_2:5363970-5363989 None:intergenic 40.0%
! AAATCACGGTGAAAGTGCAT+TGG - chr6_2:5363969-5363988 Msa0906720:intron 40.0%
! AATCACGGTGAAAGTGCATT+GGG - chr6_2:5363970-5363989 Msa0906720:intron 40.0%
!! AGTGCATTGGGAATTGGTTT+TGG - chr6_2:5363982-5364001 Msa0906720:intron 40.0%
!!! GTGCATTGGGAATTGGTTTT+GGG - chr6_2:5363983-5364002 Msa0906720:intron 40.0%
!! ACTTAGCATGTTTGGTTCTG+CGG - chr6_2:5364031-5364050 Msa0906720:intron 40.0%
CGATGAAAATCATGTTGACG+TGG - chr6_2:5364071-5364090 Msa0906720:intron 40.0%
GCACAGTTGGATAATAAACG+CGG + chr6_2:5364353-5364372 None:intergenic 40.0%
TATCCAACTGTGCCTCAAAT+AGG - chr6_2:5364360-5364379 Msa0906720:intron 40.0%
! AATCCTATTTGAGGCACAGT+TGG + chr6_2:5364366-5364385 None:intergenic 40.0%
ACGAGAGGTAATCCTATTTG+AGG + chr6_2:5364375-5364394 None:intergenic 40.0%
AATAGGATTACCTCTCGTGA+AGG - chr6_2:5364377-5364396 Msa0906720:intron 40.0%
ATAGGATTACCTCTCGTGAA+GGG - chr6_2:5364378-5364397 Msa0906720:intron 40.0%
TGTACTATTAGAACCAGGGA+AGG - chr6_2:5364591-5364610 Msa0906720:intron 40.0%
TGAAAGAGTGGCTCACAAAT+TGG - chr6_2:5364653-5364672 Msa0906720:intron 40.0%
TCATATCTTGCTAGATCAGG+AGG + chr6_2:5364694-5364713 None:intergenic 40.0%
TCAGTGGTATGAAGTTCGTT+TGG - chr6_2:5364789-5364808 Msa0906720:intron 40.0%
AGGCTGCAAAACAACTACCA+TGG + chr6_2:5362933-5362952 None:intergenic 45.0%
!! GTAGTTGTTTTGCAGCCTCA+TGG - chr6_2:5362935-5362954 Msa0906720:three_prime_UTR 45.0%
CAACTTGAGGCAGTCTATGA+TGG + chr6_2:5363540-5363559 None:intergenic 45.0%
CTGCAATAGAGTGCAACTTG+AGG + chr6_2:5363553-5363572 None:intergenic 45.0%
!! CTGAAATCAGGGTTGGTACT+TGG + chr6_2:5363854-5363873 None:intergenic 45.0%
TGGAACTTGCAAAATCACGG+TGG - chr6_2:5363904-5363923 Msa0906720:intron 45.0%
TTCCAGCTTCAGCCAAATCA+CGG - chr6_2:5363955-5363974 Msa0906720:intron 45.0%
! GGTGAAAGTGCATTGGGAAT+TGG - chr6_2:5363976-5363995 Msa0906720:intron 45.0%
!! CTTAGCATGTTTGGTTCTGC+GGG - chr6_2:5364032-5364051 Msa0906720:intron 45.0%
!! TTAGCATGTTTGGTTCTGCG+GGG - chr6_2:5364033-5364052 Msa0906720:intron 45.0%
TTCAAGTGCCAACCATGGTT+AGG - chr6_2:5364258-5364277 Msa0906720:intron 45.0%
AGAGCTAATCTTTCACAGCG+TGG - chr6_2:5364291-5364310 Msa0906720:intron 45.0%
ATTTGAATCTCGACTGGGAG+AGG - chr6_2:5364324-5364343 Msa0906720:intron 45.0%
CTACATATTCCCTTCACGAG+AGG + chr6_2:5364390-5364409 None:intergenic 45.0%
! ACTAACTGTGTCAAGTGCTG+TGG - chr6_2:5364431-5364450 Msa0906720:intron 45.0%
AGGCTGCAAAACAACTACCA+TGG + chr6_2:5362933-5362952 None:intergenic 45.0%
!! GTAGTTGTTTTGCAGCCTCA+TGG - chr6_2:5362935-5362954 Msa0906720:three_prime_UTR 45.0%
CAACTTGAGGCAGTCTATGA+TGG + chr6_2:5363540-5363559 None:intergenic 45.0%
CTGCAATAGAGTGCAACTTG+AGG + chr6_2:5363553-5363572 None:intergenic 45.0%
!! CTGAAATCAGGGTTGGTACT+TGG + chr6_2:5363854-5363873 None:intergenic 45.0%
TGGAACTTGCAAAATCACGG+TGG - chr6_2:5363904-5363923 Msa0906720:intron 45.0%
TTCCAGCTTCAGCCAAATCA+CGG - chr6_2:5363955-5363974 Msa0906720:intron 45.0%
! GGTGAAAGTGCATTGGGAAT+TGG - chr6_2:5363976-5363995 Msa0906720:intron 45.0%
!! CTTAGCATGTTTGGTTCTGC+GGG - chr6_2:5364032-5364051 Msa0906720:intron 45.0%
!! TTAGCATGTTTGGTTCTGCG+GGG - chr6_2:5364033-5364052 Msa0906720:intron 45.0%
TTCAAGTGCCAACCATGGTT+AGG - chr6_2:5364258-5364277 Msa0906720:intron 45.0%
AGAGCTAATCTTTCACAGCG+TGG - chr6_2:5364291-5364310 Msa0906720:intron 45.0%
ATTTGAATCTCGACTGGGAG+AGG - chr6_2:5364324-5364343 Msa0906720:intron 45.0%
CTACATATTCCCTTCACGAG+AGG + chr6_2:5364390-5364409 None:intergenic 45.0%
! ACTAACTGTGTCAAGTGCTG+TGG - chr6_2:5364431-5364450 Msa0906720:intron 45.0%
GCATGTGTTTGGTATGGCGT+TGG - chr6_2:5363884-5363903 Msa0906720:intron 50.0%
CCACTAGACCTAACCATGGT+TGG + chr6_2:5364269-5364288 None:intergenic 50.0%
CCAACCATGGTTAGGTCTAG+TGG - chr6_2:5364266-5364285 Msa0906720:intron 50.0%
CTCTCCACTAGACCTAACCA+TGG + chr6_2:5364273-5364292 None:intergenic 50.0%
! TGTGTCAAGTGCTGTGGCTT+TGG - chr6_2:5364437-5364456 Msa0906720:intron 50.0%
TAGAACCAGGGAAGGATGAG+AGG - chr6_2:5364599-5364618 Msa0906720:intron 50.0%
ACAAACCTCTCATCCTTCCC+TGG + chr6_2:5364607-5364626 None:intergenic 50.0%
GGATGAGAGGTTTGTGTCAG+AGG - chr6_2:5364612-5364631 Msa0906720:intron 50.0%
! GAGAAGTTGGATCGGTTCAG+TGG - chr6_2:5364773-5364792 Msa0906720:intron 50.0%
GCATGTGTTTGGTATGGCGT+TGG - chr6_2:5363884-5363903 Msa0906720:intron 50.0%
CCACTAGACCTAACCATGGT+TGG + chr6_2:5364269-5364288 None:intergenic 50.0%
CCAACCATGGTTAGGTCTAG+TGG - chr6_2:5364266-5364285 Msa0906720:intron 50.0%
CTCTCCACTAGACCTAACCA+TGG + chr6_2:5364273-5364292 None:intergenic 50.0%
! TGTGTCAAGTGCTGTGGCTT+TGG - chr6_2:5364437-5364456 Msa0906720:intron 50.0%
TAGAACCAGGGAAGGATGAG+AGG - chr6_2:5364599-5364618 Msa0906720:intron 50.0%
ACAAACCTCTCATCCTTCCC+TGG + chr6_2:5364607-5364626 None:intergenic 50.0%
GGATGAGAGGTTTGTGTCAG+AGG - chr6_2:5364612-5364631 Msa0906720:intron 50.0%
! GAGAAGTTGGATCGGTTCAG+TGG - chr6_2:5364773-5364792 Msa0906720:intron 50.0%
! CACCGTGATTTGGCTGAAGC+TGG + chr6_2:5363960-5363979 None:intergenic 55.0%
! CGGGTTTCAAGTGCCAACCA+TGG - chr6_2:5364253-5364272 Msa0906720:intron 55.0%
GAGTGGCTCACAAATTGGCC+TGG - chr6_2:5364658-5364677 Msa0906720:intron 55.0%
TCAGGAGGAAGAGTCTTGCC+AGG + chr6_2:5364679-5364698 None:intergenic 55.0%
! CACCGTGATTTGGCTGAAGC+TGG + chr6_2:5363960-5363979 None:intergenic 55.0%
! CGGGTTTCAAGTGCCAACCA+TGG - chr6_2:5364253-5364272 Msa0906720:intron 55.0%
GAGTGGCTCACAAATTGGCC+TGG - chr6_2:5364658-5364677 Msa0906720:intron 55.0%
TCAGGAGGAAGAGTCTTGCC+AGG + chr6_2:5364679-5364698 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 5362824 5365017 5362824 ID=Msa0906720;Name=Msa0906720
chr6_2 mRNA 5362824 5365017 5362824 ID=Msa0906720-mRNA-1;Parent=Msa0906720;Name=Msa0906720-mRNA-1;_AED=0.09;_eAED=0.09;_QI=130|0|1|1|0|0.5|2|201|101
chr6_2 exon 5362824 5363297 5362824 ID=Msa0906720-mRNA-1:exon:1595;Parent=Msa0906720-mRNA-1
chr6_2 exon 5364855 5365017 5364855 ID=Msa0906720-mRNA-1:exon:1594;Parent=Msa0906720-mRNA-1
chr6_2 five_prime_UTR 5364888 5365017 5364888 ID=Msa0906720-mRNA-1:five_prime_utr;Parent=Msa0906720-mRNA-1
chr6_2 CDS 5364855 5364887 5364855 ID=Msa0906720-mRNA-1:cds;Parent=Msa0906720-mRNA-1
chr6_2 CDS 5363025 5363297 5363025 ID=Msa0906720-mRNA-1:cds;Parent=Msa0906720-mRNA-1
chr6_2 three_prime_UTR 5362824 5363024 5362824 ID=Msa0906720-mRNA-1:three_prime_utr;Parent=Msa0906720-mRNA-1
Gene Sequence

>Msa0906720

ATGGTTTCAATGTTAGAGTTCAGCTTCTCCACTGTTTTTGCAATGAGGAGAAGAAGGGCAAATGAAAGAACAGATACTTATGTACTATTAGAACCAGGGAAGGATGAGAGGTTTGTGTCAGAGGAAGAGTTGAAAGATACTTTGAAAGAGTGGCTCACAAATTGGCCTGGCAAGACTCTTCCTCCTGATCTAGCAAGATATGAAACCATTGATGATGCTGTTTCTTTCTTAGCAAAGTCCTTTTGTGAACTTGAAATTGATGGAGAAGTTGGATCGGTTCAGTGGTATGAAGTTCGTTTGGAATGA

Protein sequence

>Msa0906720

MVSMLEFSFSTVFAMRRRRANERTDTYVLLEPGKDERFVSEEELKDTLKEWLTNWPGKTLPPDLARYETIDDAVSFLAKSFCELEIDGEVGSVQWYEVRLE*