AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0870010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0870010 MtrunA17_Chr6g0451471 91.892 148 11 1 31 177 31 178 9.08e-76 225
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0870010 AT5G14910.1 47.541 183 85 5 1 181 1 174 1.13e-44 146
Msa0870010 AT5G14910.2 47.541 183 85 5 1 181 1 174 1.13e-44 146

Find 43 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTCTCACCATGCTCTTTC+AGG 0.186580 6_1:+4307709 Msa0870010:CDS
GGTTTGTATAGGCCTGATTA+AGG 0.254929 6_1:+4311194 Msa0870010:three_prime_UTR
ACCTTTGACCAAAGCTTTAG+AGG 0.283689 6_1:+4309423 Msa0870010:CDS
TGTTTCATCTTCAACTGCTT+TGG 0.340905 6_1:-4307585 None:intergenic
CAAACCAAAGTGAGTGCATT+AGG 0.348755 6_1:-4311177 None:intergenic
AGAGTATCAGATGGAGAAAT+AGG 0.349041 6_1:-4307692 None:intergenic
AAAACTGTGGCAATTGGTTT+TGG 0.354814 6_1:-4307383 None:intergenic
TTTGAAGCCTAAACCTTGTA+TGG 0.362693 6_1:-4311021 None:intergenic
TGAGGGACTCGCAACTTTAG+AGG 0.364918 6_1:+4310053 Msa0870010:CDS
GCACTCACTTTGGTTTGTAT+AGG 0.366498 6_1:+4311183 Msa0870010:three_prime_UTR
TAGAGCTACCTCTAAAGCTT+TGG 0.398332 6_1:-4309431 None:intergenic
GTTAATCCATACCCTTAATC+AGG 0.407079 6_1:-4311206 None:intergenic
TTTGAAGGTTAATGTATTTG+AGG 0.412702 6_1:+4310035 Msa0870010:CDS
TATAGGCCTGATTAAGGGTA+TGG 0.414870 6_1:+4311200 Msa0870010:three_prime_UTR
TACAGGTGTGGCTTCTAGTC+TGG 0.426730 6_1:+4310992 Msa0870010:CDS
TTGAAGGTTAATGTATTTGA+GGG 0.430100 6_1:+4310036 Msa0870010:CDS
TTAATCATGAAAATTTGAAC+AGG 0.430103 6_1:-4311152 None:intergenic
CTTTGGTCACAAATAAATAA+CGG 0.438851 6_1:-4307568 None:intergenic
GTAGAAACCATACAAGGTTT+AGG 0.441670 6_1:+4311014 Msa0870010:CDS
GTTTGTATAGGCCTGATTAA+GGG 0.451992 6_1:+4311195 Msa0870010:three_prime_UTR
TGTTGATAAAACTTTGGATA+GGG 0.460152 6_1:+4307327 Msa0870010:five_prime_UTR
TTGTTGATAAAACTTTGGAT+AGG 0.469686 6_1:+4307326 Msa0870010:five_prime_UTR
AAAGCCTAATGCACTCACTT+TGG 0.482131 6_1:+4311173 Msa0870010:three_prime_UTR
GAAGAAGCAGAAGATGAAGA+AGG 0.510254 6_1:-4307476 None:intergenic
ACCTCTAAAGCTTTGGTCAA+AGG 0.511214 6_1:-4309424 None:intergenic
AAGAAGCAGAAGATGAAGAA+GGG 0.514718 6_1:-4307475 None:intergenic
TAGAAGCCACACCTGTAGCT+TGG 0.514796 6_1:-4310986 None:intergenic
TTCATGCCACTCTCGCATGA+AGG 0.521160 6_1:+4307523 Msa0870010:CDS
GGAGAAATAGGAACAACAAC+AGG 0.526893 6_1:-4307680 None:intergenic
TTTCAATGTTTGAAGGCAGA+GGG 0.537717 6_1:+4309376 Msa0870010:intron
CAGACAACAATCCAAGCTAC+AGG 0.561704 6_1:+4310975 Msa0870010:CDS
GTTGCCTAGACTAAATCTGC+TGG 0.584216 6_1:+4311089 Msa0870010:exon
AGCATGGTGAGAGTATCAGA+TGG 0.591718 6_1:-4307701 None:intergenic
TACACCAGCAGATTTAGTCT+AGG 0.594029 6_1:-4311093 None:intergenic
TCTAAAGCTTTGGTCAAAGG+TGG 0.599903 6_1:-4309421 None:intergenic
AGAGTGCCTTCATGCGAGAG+TGG 0.612644 6_1:-4307529 None:intergenic
AGTCTGGTAGAAACCATACA+AGG 0.626902 6_1:+4311008 Msa0870010:CDS
GCAACAAACATCAGTAACCT+CGG 0.649971 6_1:+4307649 Msa0870010:CDS
AGATGAAGATGAAAGTAGTG+TGG 0.655193 6_1:-4307420 None:intergenic
GAAATAGGAACAACAACAGG+TGG 0.659550 6_1:-4307677 None:intergenic
AACAATCCAAGCTACAGGTG+TGG 0.660249 6_1:+4310980 Msa0870010:CDS
GTGTTATACCTGAAAGAGCA+TGG 0.678714 6_1:-4307717 None:intergenic
AACAACAGGTGGTTGCTCCG+AGG 0.710522 6_1:-4307666 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATCAATTTTTTCAAAT+GGG - chr6_1:4307806-4307825 None:intergenic 10.0%
!!! AAAAAATCAATTTTTTCAAA+TGG - chr6_1:4307807-4307826 None:intergenic 10.0%
!!! AAATCAAATTTTTTTCATAT+GGG - chr6_1:4307928-4307947 None:intergenic 10.0%
!!! AAAATCAAATTTTTTTCATA+TGG - chr6_1:4307929-4307948 None:intergenic 10.0%
!! TTCTGAATTATTAAAAAATT+TGG - chr6_1:4309606-4309625 None:intergenic 10.0%
!! AAAATAAAGATTATATGTAA+TGG - chr6_1:4309991-4310010 None:intergenic 10.0%
!!! TGCTTAATTTTAAAAATAAA+GGG - chr6_1:4310310-4310329 None:intergenic 10.0%
!!! TTGCTTAATTTTAAAAATAA+AGG - chr6_1:4310311-4310330 None:intergenic 10.0%
!! ATAATTTGAATCAATTAAAT+TGG - chr6_1:4310669-4310688 None:intergenic 10.0%
!!! TTTTTTTGTTGATAAAACTT+TGG + chr6_1:4307321-4307340 Msa0870010:five_prime_UTR 15.0%
!!! AAAATCAATTTTTTTCACAA+GGG - chr6_1:4307775-4307794 None:intergenic 15.0%
!!! AAAAATCAATTTTTTTCACA+AGG - chr6_1:4307776-4307795 None:intergenic 15.0%
!!! AGTTTTTTTTTTCTTGAAAT+TGG + chr6_1:4308005-4308024 Msa0870010:intron 15.0%
!!! GTTTTTTTTTTCTTGAAATT+GGG + chr6_1:4308006-4308025 Msa0870010:intron 15.0%
!!! TTTTTTTTTTCTTGAAATTG+GGG + chr6_1:4308007-4308026 Msa0870010:intron 15.0%
!! AGTAATAAAATGCATATTTA+AGG + chr6_1:4308571-4308590 Msa0870010:intron 15.0%
!! GTAATAAAATGCATATTTAA+GGG + chr6_1:4308572-4308591 Msa0870010:intron 15.0%
!! CGATTCTTATTATAATTTAA+AGG + chr6_1:4309669-4309688 Msa0870010:intron 15.0%
!! ATTAAGGATTTATAAATTGA+AGG + chr6_1:4309822-4309841 Msa0870010:intron 15.0%
!!! ACATATAATCTTTATTTTGT+AGG + chr6_1:4309993-4310012 Msa0870010:intron 15.0%
!!! AAATTATGAATATTTTGAGT+GGG + chr6_1:4310682-4310701 Msa0870010:intron 15.0%
!! GATCAATATAAAACTATATA+AGG + chr6_1:4310841-4310860 Msa0870010:intron 15.0%
!! ATCAAACAAAGAACAAAAAT+TGG - chr6_1:4307968-4307987 None:intergenic 20.0%
!!! TTTTTTTTTCTTGAAATTGG+GGG + chr6_1:4308008-4308027 Msa0870010:intron 20.0%
!!! TCATTTTCTGAAAATATTAC+CGG - chr6_1:4308259-4308278 None:intergenic 20.0%
!! TTTATTACTCAAATTATCCT+GGG - chr6_1:4308560-4308579 None:intergenic 20.0%
!!! TTTTATTACTCAAATTATCC+TGG - chr6_1:4308561-4308580 None:intergenic 20.0%
!!! TATAAATGGACATTTTTTTG+AGG + chr6_1:4308789-4308808 Msa0870010:intron 20.0%
!! ATCTTAAAAGTTGTATTGTA+GGG + chr6_1:4308933-4308952 Msa0870010:intron 20.0%
!!! TTCTAATTTTTTGATTGACA+TGG + chr6_1:4309532-4309551 Msa0870010:intron 20.0%
!!! TTCTTTTGTTGTTCTTTTTT+TGG + chr6_1:4309901-4309920 Msa0870010:intron 20.0%
!! TGAATATTTCAATCACATTA+CGG - chr6_1:4310189-4310208 None:intergenic 20.0%
!! AAGAATGATTCTTAATAACT+AGG + chr6_1:4310208-4310227 Msa0870010:intron 20.0%
!! TTAAAAAAAATGAGAATCGA+GGG - chr6_1:4310368-4310387 None:intergenic 20.0%
!! ATTAAAAAAAATGAGAATCG+AGG - chr6_1:4310369-4310388 None:intergenic 20.0%
!!! CAAATTATGAATATTTTGAG+TGG + chr6_1:4310681-4310700 Msa0870010:intron 20.0%
!!! ATTAGGATTAATTGTACTTT+TGG - chr6_1:4310778-4310797 None:intergenic 20.0%
!! TTAATCATGAAAATTTGAAC+AGG - chr6_1:4311155-4311174 None:intergenic 20.0%
!!! AACTTCTTTTTTGTATTAGA+AGG + chr6_1:4311226-4311245 Msa0870010:three_prime_UTR 20.0%
!!! ACTTCTTTTTTGTATTAGAA+GGG + chr6_1:4311227-4311246 Msa0870010:three_prime_UTR 20.0%
!! TTGTTGATAAAACTTTGGAT+AGG + chr6_1:4307326-4307345 Msa0870010:five_prime_UTR 25.0%
!! TGTTGATAAAACTTTGGATA+GGG + chr6_1:4307327-4307346 Msa0870010:five_prime_UTR 25.0%
!!! CATTTTTGATTGAAAAACTG+TGG - chr6_1:4307399-4307418 None:intergenic 25.0%
!!! CACAGTTTTTCAATCAAAAA+TGG + chr6_1:4307397-4307416 Msa0870010:exon 25.0%
! CTTTGGTCACAAATAAATAA+CGG - chr6_1:4307571-4307590 None:intergenic 25.0%
!!! AAAATCGAACTTTTTTCACA+TGG - chr6_1:4307836-4307855 None:intergenic 25.0%
!!! AAAAACCAACTTTTTCACAT+GGG - chr6_1:4307867-4307886 None:intergenic 25.0%
!!! AAAAAACCAACTTTTTCACA+TGG - chr6_1:4307868-4307887 None:intergenic 25.0%
! AAAATGACAAATTTCCACAT+TGG - chr6_1:4307897-4307916 None:intergenic 25.0%
! AGTCATTATGACATGAAATT+AGG + chr6_1:4308040-4308059 Msa0870010:intron 25.0%
! GATGATTTAAAGATTGATGA+AGG + chr6_1:4308132-4308151 Msa0870010:intron 25.0%
! TTAAAGATTGATGAAGGTTA+TGG + chr6_1:4308138-4308157 Msa0870010:intron 25.0%
! GAAATAAAACACTTTCAAGA+AGG - chr6_1:4308842-4308861 None:intergenic 25.0%
!! CATGGAAATTTGTTTATAAG+TGG + chr6_1:4308894-4308913 Msa0870010:intron 25.0%
!! AAATTTGTTTATAAGTGGAG+TGG + chr6_1:4308899-4308918 Msa0870010:intron 25.0%
!!! AATACAACTTTTAAGATGAG+GGG - chr6_1:4308930-4308949 None:intergenic 25.0%
!!! CAATACAACTTTTAAGATGA+GGG - chr6_1:4308931-4308950 None:intergenic 25.0%
!!! ACAATACAACTTTTAAGATG+AGG - chr6_1:4308932-4308951 None:intergenic 25.0%
! CATCTTAAAAGTTGTATTGT+AGG + chr6_1:4308932-4308951 Msa0870010:intron 25.0%
! TATGGAGAATCTAAGAATTT+GGG - chr6_1:4309180-4309199 None:intergenic 25.0%
!! AGTCTATTTTCAATGTTTGA+AGG + chr6_1:4309369-4309388 Msa0870010:intron 25.0%
! TTCTGTCTTATATAATCCTA+AGG + chr6_1:4309722-4309741 Msa0870010:intron 25.0%
! TCTGTCTTATATAATCCTAA+GGG + chr6_1:4309723-4309742 Msa0870010:intron 25.0%
! ATGTGTGTTTGTGATAATAT+AGG + chr6_1:4309793-4309812 Msa0870010:intron 25.0%
!! ATAATATAGGCACTGTATTA+AGG + chr6_1:4309806-4309825 Msa0870010:intron 25.0%
!! TATTCCGTGAAATAATTTGT+TGG + chr6_1:4309861-4309880 Msa0870010:intron 25.0%
! ATGACCAACAAATTATTTCA+CGG - chr6_1:4309868-4309887 None:intergenic 25.0%
! TTTGAAGGTTAATGTATTTG+AGG + chr6_1:4310035-4310054 Msa0870010:CDS 25.0%
! TTGAAGGTTAATGTATTTGA+GGG + chr6_1:4310036-4310055 Msa0870010:CDS 25.0%
!!! AGAGTTTGATTTTCATCATA+TGG - chr6_1:4310110-4310129 None:intergenic 25.0%
!! ATTTCGACTATCTACAATTT+TGG + chr6_1:4310256-4310275 Msa0870010:intron 25.0%
! ATCACAAACTCTCAATTATT+TGG - chr6_1:4310392-4310411 None:intergenic 25.0%
! GATAATGACTTAAAAAGTAG+CGG + chr6_1:4310425-4310444 Msa0870010:intron 25.0%
!!! TGATTTTTTTATGCGAGATA+GGG + chr6_1:4310515-4310534 Msa0870010:intron 25.0%
! GATAATGACTTAAAAAGTAG+CGG + chr6_1:4310425-4310444 Msa0870010:intron 25.0%
!!! TTGAGTGATTTTTTATGCTT+TGG + chr6_1:4310614-4310633 Msa0870010:intron 25.0%
!!! TTTGGTTGATGAGTTTTAAA+TGG + chr6_1:4310632-4310651 Msa0870010:intron 25.0%
! GTGGGAAATGATAAAAAAAT+TGG + chr6_1:4310700-4310719 Msa0870010:intron 25.0%
! TCTGTTACAAGATAGTTATT+AGG - chr6_1:4310795-4310814 None:intergenic 25.0%
! TTAGCTTAAACATTATGCAA+TGG + chr6_1:4310913-4310932 Msa0870010:intron 25.0%
AAAATCCCATGTGAAAAAGT+TGG + chr6_1:4307859-4307878 Msa0870010:intron 30.0%
ATGACATGAAATTAGGATAG+TGG + chr6_1:4308047-4308066 Msa0870010:intron 30.0%
! AAATTAGGATAGTGGTGAAA+TGG + chr6_1:4308055-4308074 Msa0870010:intron 30.0%
! AATTAGGATAGTGGTGAAAT+GGG + chr6_1:4308056-4308075 Msa0870010:intron 30.0%
TAGATATGACACTTACACAT+AGG + chr6_1:4308231-4308250 Msa0870010:intron 30.0%
AGATATGACACTTACACATA+GGG + chr6_1:4308232-4308251 Msa0870010:intron 30.0%
TGAACTTAGACAAATCAGTT+AGG + chr6_1:4308417-4308436 Msa0870010:intron 30.0%
GAACTTAGACAAATCAGTTA+GGG + chr6_1:4308418-4308437 Msa0870010:intron 30.0%
GAGAATTATACTGTCTTAGA+AGG + chr6_1:4308466-4308485 Msa0870010:intron 30.0%
ATTAGTGAGAATAACAGTGT+AGG - chr6_1:4308725-4308744 None:intergenic 30.0%
!! GATGTGTGTAGCTTTATAAA+TGG + chr6_1:4308775-4308794 Msa0870010:intron 30.0%
TGCCATATCCTATATAATGT+GGG - chr6_1:4308876-4308895 None:intergenic 30.0%
ATGCCATATCCTATATAATG+TGG - chr6_1:4308877-4308896 None:intergenic 30.0%
ACATTATATAGGATATGGCA+TGG + chr6_1:4308876-4308895 Msa0870010:intron 30.0%
CTGATACCATCTAAGAATTT+GGG - chr6_1:4308974-4308993 None:intergenic 30.0%
TCTGATACCATCTAAGAATT+TGG - chr6_1:4308975-4308994 None:intergenic 30.0%
AAATTCTTAGATGGTATCAG+AGG + chr6_1:4308974-4308993 Msa0870010:intron 30.0%
CTGAAACTGTGTTTATAAGT+GGG + chr6_1:4309110-4309129 Msa0870010:intron 30.0%
GTATGGAGAATCTAAGAATT+TGG - chr6_1:4309181-4309200 None:intergenic 30.0%
ATTTAAGTGATTCCAGTGTA+TGG - chr6_1:4309198-4309217 None:intergenic 30.0%
ACCTTAAAATTGCATGCTTA+AGG + chr6_1:4309228-4309247 Msa0870010:intron 30.0%
CCTTAAAATTGCATGCTTAA+GGG + chr6_1:4309229-4309248 Msa0870010:intron 30.0%
ATTTGCACATTGTAAAGTCT+AGG - chr6_1:4309319-4309338 None:intergenic 30.0%
! AGAATCAGTCTTATACATCT+TGG + chr6_1:4309622-4309641 Msa0870010:intron 30.0%
! TAAAACAGCTATTGTTGTTG+TGG - chr6_1:4309766-4309785 None:intergenic 30.0%
ATTACCGAATTTGAAGATTG+TGG + chr6_1:4309930-4309949 Msa0870010:intron 30.0%
! TTGATAATAGGCAAGTGTTA+GGG - chr6_1:4309964-4309983 None:intergenic 30.0%
! ATTGATAATAGGCAAGTGTT+AGG - chr6_1:4309965-4309984 None:intergenic 30.0%
!! TGTAATGGAGCATTGATAAT+AGG - chr6_1:4309976-4309995 None:intergenic 30.0%
!!! TTTATTTTGTAGGAGACAGA+GGG + chr6_1:4310003-4310022 Msa0870010:intron 30.0%
!! AGAGGGTGTTAAAAATTTGA+AGG + chr6_1:4310020-4310039 Msa0870010:CDS 30.0%
AAATCAAACTCTTTAGCCAT+TGG + chr6_1:4310118-4310137 Msa0870010:intron 30.0%
AAACAATCATCGAAAACCAA+TGG - chr6_1:4310137-4310156 None:intergenic 30.0%
! GTTTTCGATGATTGTTTACA+AGG + chr6_1:4310140-4310159 Msa0870010:intron 30.0%
TGTAGATAGTCGAAATTTGT+GGG - chr6_1:4310252-4310271 None:intergenic 30.0%
TTGTAGATAGTCGAAATTTG+TGG - chr6_1:4310253-4310272 None:intergenic 30.0%
ATTAGAAGAAAACTGTTAGC+AGG - chr6_1:4310341-4310360 None:intergenic 30.0%
! CTTAAAAAGTAGCGGAAATT+TGG + chr6_1:4310433-4310452 Msa0870010:intron 30.0%
GGAAATTTGGTAAGATTTGA+AGG + chr6_1:4310446-4310465 Msa0870010:intron 30.0%
!!! GTGATTTTTTTATGCGAGAT+AGG + chr6_1:4310514-4310533 Msa0870010:intron 30.0%
! CTTAAAAAGTAGCGGAAATT+TGG + chr6_1:4310433-4310452 Msa0870010:intron 30.0%
GGAAATTTGGTAAGATTTGA+AGG + chr6_1:4310446-4310465 Msa0870010:intron 30.0%
!!! TTTTGGTTTGGTAGGTTTTG+AGG - chr6_1:4307369-4307388 None:intergenic 35.0%
!! AAAACTGTGGCAATTGGTTT+TGG - chr6_1:4307386-4307405 None:intergenic 35.0%
GATTGAAAAACTGTGGCAAT+TGG - chr6_1:4307392-4307411 None:intergenic 35.0%
AGATGAAGATGAAAGTAGTG+TGG - chr6_1:4307423-4307442 None:intergenic 35.0%
AAGAAGCAGAAGATGAAGAA+GGG - chr6_1:4307478-4307497 None:intergenic 35.0%
! TGGCATGAAAAAGTGCAAAA+TGG - chr6_1:4307512-4307531 None:intergenic 35.0%
TGTTTCATCTTCAACTGCTT+TGG - chr6_1:4307588-4307607 None:intergenic 35.0%
! AGAGTATCAGATGGAGAAAT+AGG - chr6_1:4307695-4307714 None:intergenic 35.0%
!!! GGTTTTTTGAAATGCCAATG+TGG + chr6_1:4307880-4307899 Msa0870010:intron 35.0%
GGTTACTCTGATTGAAGATA+TGG + chr6_1:4308077-4308096 Msa0870010:intron 35.0%
TACTCTGATTGAAGATATGG+TGG + chr6_1:4308080-4308099 Msa0870010:intron 35.0%
ACATCTTCAATCTGTAGTGT+CGG + chr6_1:4308337-4308356 Msa0870010:intron 35.0%
ACTTAGAGTAAATAATGCCC+AGG + chr6_1:4308540-4308559 Msa0870010:intron 35.0%
CAACCTACTCTATATCCTTT+AGG + chr6_1:4308631-4308650 Msa0870010:intron 35.0%
ACTCTCAATTATGTGCCTAA+AGG - chr6_1:4308649-4308668 None:intergenic 35.0%
TCCTACTATCATGAGTCTAT+GGG + chr6_1:4308693-4308712 Msa0870010:intron 35.0%
AAAGCTACACACATCTACAT+TGG - chr6_1:4308770-4308789 None:intergenic 35.0%
CTTTCAAGAAGGATACTAGT+GGG - chr6_1:4308831-4308850 None:intergenic 35.0%
ACTTTCAAGAAGGATACTAG+TGG - chr6_1:4308832-4308851 None:intergenic 35.0%
GTCCCACATTATATAGGATA+TGG + chr6_1:4308871-4308890 Msa0870010:intron 35.0%
TTTGTTTATAAGTGGAGTGG+AGG + chr6_1:4308902-4308921 Msa0870010:intron 35.0%
AGAGGTTATTCAAGATTCGT+TGG + chr6_1:4308992-4309011 Msa0870010:intron 35.0%
GCTGAAACTGTGTTTATAAG+TGG + chr6_1:4309109-4309128 Msa0870010:intron 35.0%
AAACTGTGTTTATAAGTGGG+AGG + chr6_1:4309113-4309132 Msa0870010:intron 35.0%
TTCTTAGATTCTCCATACAC+TGG + chr6_1:4309183-4309202 Msa0870010:intron 35.0%
! CCCTTAAGCATGCAATTTTA+AGG - chr6_1:4309232-4309251 None:intergenic 35.0%
! TTTTCAATGTTTGAAGGCAG+AGG + chr6_1:4309375-4309394 Msa0870010:intron 35.0%
TTTCAATGTTTGAAGGCAGA+GGG + chr6_1:4309376-4309395 Msa0870010:intron 35.0%
ACGTTGAAGTAAGTGAACAA+GGG - chr6_1:4309480-4309499 None:intergenic 35.0%
TAGCATCATCACTGAAGTAA+AGG - chr6_1:4309565-4309584 None:intergenic 35.0%
AAAGAGAAATACTCTCCCTT+AGG - chr6_1:4309741-4309760 None:intergenic 35.0%
TAGGCCACAATCTTCAAATT+CGG - chr6_1:4309937-4309956 None:intergenic 35.0%
!!! CTTTATTTTGTAGGAGACAG+AGG + chr6_1:4310002-4310021 Msa0870010:intron 35.0%
! TTTTTGCAGAATGTGTGACT+AGG + chr6_1:4310470-4310489 Msa0870010:intron 35.0%
! TTTTGCAGAATGTGTGACTA+GGG + chr6_1:4310471-4310490 Msa0870010:intron 35.0%
TTATGCTTATTGTGCTCAGT+TGG + chr6_1:4310947-4310966 Msa0870010:intron 35.0%
GTAGAAACCATACAAGGTTT+AGG + chr6_1:4311014-4311033 Msa0870010:CDS 35.0%
! TTTGAAGCCTAAACCTTGTA+TGG - chr6_1:4311024-4311043 None:intergenic 35.0%
GTTTGTATAGGCCTGATTAA+GGG + chr6_1:4311195-4311214 Msa0870010:three_prime_UTR 35.0%
GTTAATCCATACCCTTAATC+AGG - chr6_1:4311209-4311228 None:intergenic 35.0%
!!! GCAATTGGTTTTGGTTTGGT+AGG - chr6_1:4307377-4307396 None:intergenic 40.0%
!!! TGTGGCAATTGGTTTTGGTT+TGG - chr6_1:4307381-4307400 None:intergenic 40.0%
GAAGAAGCAGAAGATGAAGA+AGG - chr6_1:4307479-4307498 None:intergenic 40.0%
GCAACAAACATCAGTAACCT+CGG + chr6_1:4307649-4307668 Msa0870010:CDS 40.0%
GAAATAGGAACAACAACAGG+TGG - chr6_1:4307680-4307699 None:intergenic 40.0%
GGAGAAATAGGAACAACAAC+AGG - chr6_1:4307683-4307702 None:intergenic 40.0%
GTGTTATACCTGAAAGAGCA+TGG - chr6_1:4307720-4307739 None:intergenic 40.0%
AAGGTGCACACTAGAATCAA+TGG - chr6_1:4307742-4307761 None:intergenic 40.0%
TCTGATTGAAGATATGGTGG+TGG + chr6_1:4308083-4308102 Msa0870010:intron 40.0%
!! AGATATGGTGGTGGTTATTG+TGG + chr6_1:4308092-4308111 Msa0870010:intron 40.0%
TGATTGAATGTAACCCGTGT+TGG + chr6_1:4308282-4308301 Msa0870010:intron 40.0%
CTCGTAAGTATGCAGTTCAT+TGG + chr6_1:4308508-4308527 Msa0870010:intron 40.0%
GTGCCTAAAGGATATAGAGT+AGG - chr6_1:4308637-4308656 None:intergenic 40.0%
CTCATGATAGTAGGACGTTA+GGG - chr6_1:4308688-4308707 None:intergenic 40.0%
ACTCATGATAGTAGGACGTT+AGG - chr6_1:4308689-4308708 None:intergenic 40.0%
GTCCTACTATCATGAGTCTA+TGG + chr6_1:4308692-4308711 Msa0870010:intron 40.0%
TCCCATAGACTCATGATAGT+AGG - chr6_1:4308697-4308716 None:intergenic 40.0%
TATCATGAGTCTATGGGACA+AGG + chr6_1:4308699-4308718 Msa0870010:intron 40.0%
CACACATCTACATTGGAACA+TGG - chr6_1:4308763-4308782 None:intergenic 40.0%
CTGAGAGTCCCACATTATAT+AGG + chr6_1:4308865-4308884 Msa0870010:intron 40.0%
TTGTATTGTAGGGTCGAGTT+AGG + chr6_1:4308943-4308962 Msa0870010:intron 40.0%
GCTCAACCCAAATTCTTAGA+TGG + chr6_1:4308965-4308984 Msa0870010:intron 40.0%
! AAATCTAGAATGTGACCAGG+TGG - chr6_1:4309034-4309053 None:intergenic 40.0%
! TGGAAATCTAGAATGTGACC+AGG - chr6_1:4309037-4309056 None:intergenic 40.0%
ACATTCTAGATTTCCAGTCC+TGG + chr6_1:4309041-4309060 Msa0870010:intron 40.0%
CATTCTAGATTTCCAGTCCT+GGG + chr6_1:4309042-4309061 Msa0870010:intron 40.0%
! TCTAAAGCTTTGGTCAAAGG+TGG - chr6_1:4309424-4309443 None:intergenic 40.0%
! ACCTTTGACCAAAGCTTTAG+AGG + chr6_1:4309423-4309442 Msa0870010:CDS 40.0%
!! ACCTCTAAAGCTTTGGTCAA+AGG - chr6_1:4309427-4309446 None:intergenic 40.0%
!! TAGAGCTACCTCTAAAGCTT+TGG - chr6_1:4309434-4309453 None:intergenic 40.0%
CGTTGAAGTAAGTGAACAAG+GGG - chr6_1:4309479-4309498 None:intergenic 40.0%
CACGTTGAAGTAAGTGAACA+AGG - chr6_1:4309481-4309500 None:intergenic 40.0%
! TACTTCAGTGATGATGCTAG+AGG + chr6_1:4309566-4309585 Msa0870010:intron 40.0%
! ACTTCAGTGATGATGCTAGA+GGG + chr6_1:4309567-4309586 Msa0870010:intron 40.0%
AATGTGTGACTAGGGTTTGA+AGG + chr6_1:4310479-4310498 Msa0870010:intron 40.0%
TTATGCGAGATAGGGTTTGA+AGG + chr6_1:4310523-4310542 Msa0870010:intron 40.0%
AGCCATGCCATTATAGTGTA+CGG - chr6_1:4310750-4310769 None:intergenic 40.0%
AACAAGTGCTCATGAACTTC+TGG + chr6_1:4310864-4310883 Msa0870010:intron 40.0%
AGTCTGGTAGAAACCATACA+AGG + chr6_1:4311008-4311027 Msa0870010:CDS 40.0%
TACACCAGCAGATTTAGTCT+AGG - chr6_1:4311096-4311115 None:intergenic 40.0%
AAAGCCTAATGCACTCACTT+TGG + chr6_1:4311173-4311192 Msa0870010:three_prime_UTR 40.0%
CAAACCAAAGTGAGTGCATT+AGG - chr6_1:4311180-4311199 None:intergenic 40.0%
!! GCACTCACTTTGGTTTGTAT+AGG + chr6_1:4311183-4311202 Msa0870010:three_prime_UTR 40.0%
GGTTTGTATAGGCCTGATTA+AGG + chr6_1:4311194-4311213 Msa0870010:three_prime_UTR 40.0%
TATAGGCCTGATTAAGGGTA+TGG + chr6_1:4311200-4311219 Msa0870010:three_prime_UTR 40.0%
!! AGCATGGTGAGAGTATCAGA+TGG - chr6_1:4307704-4307723 None:intergenic 45.0%
TACTCTCACCATGCTCTTTC+AGG + chr6_1:4307709-4307728 Msa0870010:CDS 45.0%
!! TCACAAGGGCATTGCAGAAA+AGG - chr6_1:4307761-4307780 None:intergenic 45.0%
TGACACTTACACATAGGGAC+CGG + chr6_1:4308237-4308256 Msa0870010:intron 45.0%
TGTCCAACACTCACACATGT+CGG + chr6_1:4308305-4308324 Msa0870010:intron 45.0%
!! CGGTGTTACCTAGCTCTTAA+TGG + chr6_1:4308357-4308376 Msa0870010:intron 45.0%
! TACCTAGCTCTTAATGGTGC+AGG + chr6_1:4308363-4308382 Msa0870010:intron 45.0%
AACCTGCACCATTAAGAGCT+AGG - chr6_1:4308368-4308387 None:intergenic 45.0%
TATAATGTGGGACTCTCAGC+AGG - chr6_1:4308864-4308883 None:intergenic 45.0%
TGACCAGGTGGTTTGACATT+GGG - chr6_1:4309022-4309041 None:intergenic 45.0%
TTGCGTTGAGAGTCTCTCAT+TGG + chr6_1:4309075-4309094 Msa0870010:intron 45.0%
CCAACCGAACAGTACAAAAC+CGG - chr6_1:4309151-4309170 None:intergenic 45.0%
!! CGGTTTTGTACTGTTCGGTT+GGG + chr6_1:4309149-4309168 Msa0870010:intron 45.0%
! ATTGGCCTCATAGTGAACAG+CGG + chr6_1:4310718-4310737 Msa0870010:intron 45.0%
CTCCGTACACTATAATGGCA+TGG + chr6_1:4310745-4310764 Msa0870010:intron 45.0%
CACTATAATGGCATGGCTTG+TGG + chr6_1:4310752-4310771 Msa0870010:intron 45.0%
CAGACAACAATCCAAGCTAC+AGG + chr6_1:4310975-4310994 Msa0870010:CDS 45.0%
AACAATCCAAGCTACAGGTG+TGG + chr6_1:4310980-4310999 Msa0870010:CDS 45.0%
GTTGCCTAGACTAAATCTGC+TGG + chr6_1:4311089-4311108 Msa0870010:exon 45.0%
TTCATGCCACTCTCGCATGA+AGG + chr6_1:4307523-4307542 Msa0870010:CDS 50.0%
!! TGAGTGTTGGACACCAACAC+GGG - chr6_1:4308298-4308317 None:intergenic 50.0%
!! GTGAGTGTTGGACACCAACA+CGG - chr6_1:4308299-4308318 None:intergenic 50.0%
TGTCCGACATGTGTGAGTGT+TGG - chr6_1:4308311-4308330 None:intergenic 50.0%
GCTCTTAATGGTGCAGGTTG+TGG + chr6_1:4308369-4308388 Msa0870010:intron 50.0%
GTGCAGGTTGTGGATGTGTA+GGG + chr6_1:4308379-4308398 Msa0870010:intron 50.0%
TCACCCAATGTCAAACCACC+TGG + chr6_1:4309016-4309035 Msa0870010:intron 50.0%
GTGACCAGGTGGTTTGACAT+TGG - chr6_1:4309023-4309042 None:intergenic 50.0%
!!! GCTGCCGGTTTTGTACTGTT+CGG + chr6_1:4309144-4309163 Msa0870010:intron 50.0%
!! CCGGTTTTGTACTGTTCGGT+TGG + chr6_1:4309148-4309167 Msa0870010:intron 50.0%
AGGCAAGTGTTAGGGTCACT+AGG - chr6_1:4309956-4309975 None:intergenic 50.0%
TGAGGGACTCGCAACTTTAG+AGG + chr6_1:4310053-4310072 Msa0870010:CDS 50.0%
GCCTGCTCCGTACACTATAA+TGG + chr6_1:4310740-4310759 Msa0870010:intron 50.0%
GCCATTATAGTGTACGGAGC+AGG - chr6_1:4310744-4310763 None:intergenic 50.0%
TAGAAGCCACACCTGTAGCT+TGG - chr6_1:4310989-4311008 None:intergenic 50.0%
TACAGGTGTGGCTTCTAGTC+TGG + chr6_1:4310992-4311011 Msa0870010:CDS 50.0%
! AGAGTGCCTTCATGCGAGAG+TGG - chr6_1:4307532-4307551 None:intergenic 55.0%
AACAACAGGTGGTTGCTCCG+AGG - chr6_1:4307669-4307688 None:intergenic 55.0%
GGTGCAGGTTGTGGATGTGT+AGG + chr6_1:4308378-4308397 Msa0870010:intron 55.0%
ATTTCCAGTCCTGGGCGTGA+GGG + chr6_1:4309050-4309069 Msa0870010:intron 55.0%
CAGTACAAAACCGGCAGCGA+GGG - chr6_1:4309142-4309161 None:intergenic 55.0%
ACAGTACAAAACCGGCAGCG+AGG - chr6_1:4309143-4309162 None:intergenic 55.0%
GATTTCCAGTCCTGGGCGTG+AGG + chr6_1:4309049-4309068 Msa0870010:intron 60.0%
TTTCCAGTCCTGGGCGTGAG+GGG + chr6_1:4309051-4309070 Msa0870010:intron 60.0%
GCAGGCCGCTGTTCACTATG+AGG - chr6_1:4310726-4310745 None:intergenic 60.0%
AAACCCCTCACGCCCAGGAC+TGG - chr6_1:4309057-4309076 None:intergenic 65.0%
AACGCAAACCCCTCACGCCC+AGG - chr6_1:4309062-4309081 None:intergenic 65.0%
!! TGGGAGGCATCCCTCGCTGC+CGG + chr6_1:4309129-4309148 Msa0870010:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 4307298 4311349 4307298 ID=Msa0870010;Name=Msa0870010
chr6_1 mRNA 4307298 4311349 4307298 ID=Msa0870010-mRNA-1;Parent=Msa0870010;Name=Msa0870010-mRNA-1;_AED=0.04;_eAED=0.04;_QI=118|1|1|1|0.75|0.6|5|232|186
chr6_1 exon 4307298 4307730 4307298 ID=Msa0870010-mRNA-1:exon:1364;Parent=Msa0870010-mRNA-1
chr6_1 exon 4309391 4309444 4309391 ID=Msa0870010-mRNA-1:exon:1365;Parent=Msa0870010-mRNA-1
chr6_1 exon 4310015 4310074 4310015 ID=Msa0870010-mRNA-1:exon:1366;Parent=Msa0870010-mRNA-1
chr6_1 exon 4310966 4311258 4310966 ID=Msa0870010-mRNA-1:exon:1367;Parent=Msa0870010-mRNA-1
chr6_1 exon 4311279 4311349 4311279 ID=Msa0870010-mRNA-1:exon:1368;Parent=Msa0870010-mRNA-1
chr6_1 five_prime_UTR 4307298 4307415 4307298 ID=Msa0870010-mRNA-1:five_prime_utr;Parent=Msa0870010-mRNA-1
chr6_1 CDS 4307416 4307730 4307416 ID=Msa0870010-mRNA-1:cds;Parent=Msa0870010-mRNA-1
chr6_1 CDS 4309391 4309444 4309391 ID=Msa0870010-mRNA-1:cds;Parent=Msa0870010-mRNA-1
chr6_1 CDS 4310015 4310074 4310015 ID=Msa0870010-mRNA-1:cds;Parent=Msa0870010-mRNA-1
chr6_1 CDS 4310966 4311097 4310966 ID=Msa0870010-mRNA-1:cds;Parent=Msa0870010-mRNA-1
chr6_1 three_prime_UTR 4311098 4311258 4311098 ID=Msa0870010-mRNA-1:three_prime_utr;Parent=Msa0870010-mRNA-1
chr6_1 three_prime_UTR 4311279 4311349 4311279 ID=Msa0870010-mRNA-1:three_prime_utr;Parent=Msa0870010-mRNA-1
Gene Sequence

>Msa0870010

ATGGCCACACTACTTTCATCTTCATCTCTTCACTCAATTCGTCTCTCTTCTTCTACAATCCCTTCTTCATCTTCTGCTTCTTCTCATTCTCTTCCATTTTGCACTTTTTCATGCCACTCTCGCATGAAGGCACTCTCAATCAAGAAGAAAAACCGTTATTTATTTGTGACCAAAGCAGTTGAAGATGAAACACAACAAGAACAAGAACAAGCTGTTACTGATGTTGAACAACAGCAACAAACATCAGTAACCTCGGAGCAACCACCTGTTGTTGTTCCTATTTCTCCATCTGATACTCTCACCATGCTCTTTCAGGCAGAGGGAACATTGAATGAAACAGCTGTTCCACCTTTGACCAAAGCTTTAGAGGAGACAGAGGGTGTTAAAAATTTGAAGGTTAATGTATTTGAGGGACTCGCAACTTTAGAGTTGGAAAAGCAGACAACAATCCAAGCTACAGGTGTGGCTTCTAGTCTGGTAGAAACCATACAAGGTTTAGGCTTCAAATTACAGACATTAAATCTCAGTTTTGATGATGAAGATGTTGCAGCAGTTGCCTAG

Protein sequence

>Msa0870010

MATLLSSSSLHSIRLSSSTIPSSSSASSHSLPFCTFSCHSRMKALSIKKKNRYLFVTKAVEDETQQEQEQAVTDVEQQQQTSVTSEQPPVVVPISPSDTLTMLFQAEGTLNETAVPPLTKALEETEGVKNLKVNVFEGLATLELEKQTTIQATGVASSLVETIQGLGFKLQTLNLSFDDEDVAAVA*