AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0875360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875360 MtrunA17_Chr6g0456351 91.627 633 28 3 1 632 1 609 0.0 1135
Msa0875360 MtrunA17_Chr7g0217421 54.317 278 121 3 321 595 21 295 5.82e-89 282
Msa0875360 MtrunA17_Chr3g0143721 54.815 270 114 3 340 606 249 513 1.02e-85 282
Msa0875360 MtrunA17_Chr7g0260601 47.231 307 147 2 307 598 196 502 1.26e-85 282
Msa0875360 MtrunA17_Chr4g0052411 44.932 365 178 6 277 622 151 511 1.61e-85 281
Msa0875360 MtrunA17_Chr5g0429571 57.196 271 108 3 325 589 298 566 6.10e-85 282
Msa0875360 MtrunA17_Chr2g0297281 50.680 294 138 4 332 622 279 568 6.44e-84 278
Msa0875360 MtrunA17_Chr3g0104211 57.364 258 102 3 338 589 302 557 1.99e-82 275
Msa0875360 MtrunA17_Chr6g0476861 49.814 269 131 1 331 595 188 456 3.15e-79 265
Msa0875360 MtrunA17_Chr7g0248361 51.908 262 118 2 340 595 192 451 8.35e-79 262
Msa0875360 MtrunA17_Chr3g0135721 51.825 274 126 3 334 606 217 485 4.41e-78 262
Msa0875360 MtrunA17_Chr4g0031821 48.913 276 137 1 324 595 304 579 9.47e-78 263
Msa0875360 MtrunA17_Chr3g0094871 47.490 259 133 1 338 593 9 267 1.88e-76 250
Msa0875360 MtrunA17_Chr8g0362771 49.481 289 133 5 316 599 212 492 3.33e-76 257
Msa0875360 MtrunA17_Chr3g0135761 52.290 262 120 2 342 603 224 480 2.79e-75 254
Msa0875360 MtrunA17_Chr2g0331161 50.579 259 123 2 340 595 415 671 4.78e-74 254
Msa0875360 MtrunA17_Chr1g0158881 49.259 270 134 2 331 600 320 586 2.39e-71 245
Msa0875360 MtrunA17_Chr3g0129971 48.507 268 131 3 340 600 296 563 3.36e-69 240
Msa0875360 MtrunA17_Chr5g0432631 50.562 267 126 4 334 599 222 483 8.39e-69 240
Msa0875360 MtrunA17_Chr5g0432641 49.612 258 128 2 342 599 193 448 3.44e-66 229
Msa0875360 MtrunA17_Chr8g0388371 43.214 280 145 3 318 585 381 658 9.66e-64 226
Msa0875360 MtrunA17_Chr3g0135781 53.261 184 85 1 316 498 30 213 1.34e-56 190
Msa0875360 MtrunA17_Chr1g0192151 42.857 245 134 3 339 579 166 408 2.76e-53 188
Msa0875360 MtrunA17_Chr4g0014731 42.857 245 134 3 339 579 167 409 3.72e-53 188
Msa0875360 MtrunA17_Chr3g0145011 40.891 247 140 3 339 581 138 382 1.54e-51 183
Msa0875360 MtrunA17_Chr7g0264521 41.129 248 142 3 329 574 194 439 1.99e-51 190
Msa0875360 MtrunA17_Chr7g0264521 35.294 289 165 6 324 603 461 736 8.52e-47 177
Msa0875360 MtrunA17_Chr2g0327121 42.797 236 132 2 340 574 207 440 2.41e-51 190
Msa0875360 MtrunA17_Chr2g0327121 36.996 273 150 6 320 583 458 717 3.73e-46 175
Msa0875360 MtrunA17_Chr1g0180791 42.373 236 133 2 340 574 205 438 2.83e-51 189
Msa0875360 MtrunA17_Chr1g0180791 38.290 269 144 6 324 583 460 715 8.99e-48 179
Msa0875360 MtrunA17_Chr3g0141901 43.318 217 118 2 368 581 165 379 3.05e-51 182
Msa0875360 MtrunA17_Chr1g0168321 40.458 262 111 3 340 595 164 386 5.01e-48 176
Msa0875360 MtrunA17_Chr4g0050561 36.940 268 150 4 342 598 158 417 1.24e-47 172
Msa0875360 MtrunA17_Chr8g0345461 38.800 250 147 3 340 585 165 412 1.56e-47 172
Msa0875360 MtrunA17_Chr2g0277831 46.288 229 115 4 342 565 245 470 2.03e-47 178
Msa0875360 MtrunA17_Chr2g0277831 39.556 225 135 1 339 562 532 756 8.06e-41 159
Msa0875360 MtrunA17_Chr7g0255721 41.593 226 127 3 340 562 685 908 2.69e-47 179
Msa0875360 MtrunA17_Chr7g0255721 38.288 222 135 2 347 568 393 612 2.96e-33 136
Msa0875360 MtrunA17_Chr7g0262801 40.081 247 142 3 342 584 189 433 1.81e-46 170
Msa0875360 MtrunA17_Chr1g0182711 39.676 247 143 3 342 584 190 434 5.96e-46 169
Msa0875360 MtrunA17_Chr1g0200081 34.740 308 181 7 285 585 127 421 1.42e-45 167
Msa0875360 MtrunA17_Chr7g0255651 40.316 253 145 3 318 566 260 510 1.63e-44 167
Msa0875360 MtrunA17_Chr7g0255651 35.545 211 119 6 374 575 48 250 1.04e-20 96.3
Msa0875360 MtrunA17_Chr8g0357301 38.559 236 132 4 355 581 485 716 2.95e-43 167
Msa0875360 MtrunA17_Chr7g0255641 37.349 249 149 4 340 583 658 904 7.03e-43 166
Msa0875360 MtrunA17_Chr7g0255641 35.268 224 130 6 378 592 432 649 1.44e-28 122
Msa0875360 MtrunA17_Chr3g0108321 42.424 198 107 3 330 523 152 346 4.06e-41 153
Msa0875360 MtrunA17_Chr7g0255691 41.921 229 127 3 340 564 286 512 1.51e-40 155
Msa0875360 MtrunA17_Chr7g0255691 38.235 204 115 4 369 565 47 246 5.78e-27 115
Msa0875360 MtrunA17_Chr7g0255901 37.815 238 137 7 335 565 634 867 1.03e-37 150
Msa0875360 MtrunA17_Chr3g0086401 36.897 290 145 7 310 565 38 323 2.71e-37 147
Msa0875360 MtrunA17_Chr3g0086401 35.802 243 136 4 340 563 385 626 7.95e-33 134
Msa0875360 MtrunA17_Chr6g0459561 36.111 288 158 11 333 606 378 653 7.76e-37 146
Msa0875360 MtrunA17_Chr4g0026631 37.603 242 141 7 332 570 122 356 9.74e-37 142
Msa0875360 MtrunA17_Chr1g0190401 41.848 184 103 2 340 519 677 860 3.01e-36 145
Msa0875360 MtrunA17_Chr1g0202371 40.336 238 113 8 336 559 393 615 3.13e-36 144
Msa0875360 MtrunA17_Chr8g0387641 36.364 264 148 6 336 595 517 764 7.60e-36 144
Msa0875360 MtrunA17_Chr2g0321241 36.327 245 140 8 332 570 127 361 9.78e-36 139
Msa0875360 MtrunA17_Chr2g0316851 37.069 232 137 4 341 565 595 824 1.34e-35 144
Msa0875360 MtrunA17_Chr6g0462581 39.485 233 132 5 336 564 496 723 1.94e-35 142
Msa0875360 MtrunA17_Chr4g0043381 34.146 246 146 4 341 583 838 1070 2.99e-35 142
Msa0875360 MtrunA17_Chr3g0086411 34.091 264 157 3 340 586 215 478 4.81e-35 139
Msa0875360 MtrunA17_Chr3g0086411 45.205 146 73 1 427 565 7 152 1.69e-25 110
Msa0875360 MtrunA17_Chr3g0127431 37.179 234 139 4 335 564 79 308 6.63e-35 136
Msa0875360 MtrunA17_Chr5g0397121 38.889 234 133 6 336 564 509 737 1.34e-34 140
Msa0875360 MtrunA17_Chr2g0327231 40.884 181 98 4 321 495 328 505 3.10e-34 136
Msa0875360 MtrunA17_Chr2g0327231 37.079 89 53 1 340 428 153 238 4.12e-12 68.9
Msa0875360 MtrunA17_Chr1g0202381 38.983 236 120 8 336 559 464 687 5.05e-34 138
Msa0875360 MtrunA17_Chr4g0004121 36.948 249 142 6 337 575 239 482 1.06e-33 135
Msa0875360 MtrunA17_Chr3g0116131 38.559 236 132 7 335 565 897 1124 1.08e-33 138
Msa0875360 MtrunA17_Chr1g0204031 38.034 234 135 6 336 564 553 781 3.38e-33 136
Msa0875360 MtrunA17_Chr3g0127401 36.752 234 140 4 335 564 76 305 5.35e-33 130
Msa0875360 MtrunA17_Chr5g0432391 43.452 168 93 1 414 581 78 243 5.52e-33 131
Msa0875360 MtrunA17_Chr1g0195741 37.447 235 138 5 335 564 933 1163 6.25e-33 135
Msa0875360 MtrunA17_Chr1g0195731 36.885 244 145 6 335 573 929 1168 8.08e-33 135
Msa0875360 MtrunA17_Chr4g0052271 35.798 257 149 9 337 585 116 364 1.25e-32 130
Msa0875360 MtrunA17_Chr4g0038101 36.522 230 137 5 335 559 716 941 6.00e-32 132
Msa0875360 MtrunA17_Chr4g0033451 36.066 244 147 4 338 574 378 619 2.62e-31 130
Msa0875360 MtrunA17_Chr7g0246111 35.498 231 142 5 337 564 209 435 3.56e-30 124
Msa0875360 MtrunA17_Chr6g0459541 30.645 310 170 10 333 606 38 338 3.06e-29 119
Msa0875360 MtrunA17_Chr2g0289231 35.455 220 124 5 369 584 335 540 6.43e-28 118
Msa0875360 MtrunA17_Chr4g0047411 36.283 226 124 6 370 580 207 427 3.52e-27 117
Msa0875360 MtrunA17_Chr6g0459551 29.739 306 167 9 340 606 102 398 2.86e-25 108
Msa0875360 MtrunA17_Chr6g0459531 27.698 278 157 9 340 606 67 311 2.29e-15 77.8
Msa0875360 MtrunA17_Chr5g0404651 35.404 161 87 6 368 520 243 394 5.76e-13 71.6
Msa0875360 MtrunA17_Chr4g0062081 42.857 77 42 2 344 418 11 87 7.48e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875360 AT3G02450.1 68.235 510 144 5 123 631 130 622 0.0 695
Msa0875360 AT1G50250.1 56.061 264 111 2 340 600 259 520 3.55e-85 281
Msa0875360 AT5G58870.1 57.414 263 104 3 336 592 322 582 3.59e-85 283
Msa0875360 AT5G15250.1 55.472 265 112 3 334 595 216 477 4.43e-85 281
Msa0875360 AT1G06430.1 50.165 303 144 4 323 622 201 499 1.25e-84 279
Msa0875360 AT1G06430.3 50.165 303 144 4 323 622 201 499 1.25e-84 279
Msa0875360 AT1G06430.2 50.165 303 144 4 323 622 201 499 1.25e-84 279
Msa0875360 AT2G30950.1 54.444 270 116 4 334 600 219 484 1.42e-84 280
Msa0875360 AT2G30950.2 54.444 270 116 4 334 600 219 484 1.42e-84 280
Msa0875360 AT2G30950.3 54.444 270 116 4 334 600 219 484 1.42e-84 280
Msa0875360 AT2G30950.4 54.444 270 116 4 334 600 223 488 1.45e-84 280
Msa0875360 AT3G47060.1 57.854 261 102 3 338 592 320 578 1.74e-84 281
Msa0875360 AT5G42270.1 55.303 264 113 2 340 600 247 508 3.15e-84 279
Msa0875360 AT5G15250.2 51.042 288 112 4 334 595 216 500 2.45e-82 268
Msa0875360 AT2G26140.1 54.962 262 113 2 342 603 226 482 2.34e-79 266
Msa0875360 AT1G07510.1 48.387 279 140 1 324 598 308 586 3.27e-79 268
Msa0875360 AT2G29080.1 48.201 278 141 1 324 598 303 580 4.56e-77 262
Msa0875360 AT5G53170.1 50.741 270 130 2 331 600 350 616 4.85e-75 256
Msa0875360 AT3G16290.1 50.973 257 121 2 340 593 407 661 3.43e-74 255
Msa0875360 AT5G64580.1 41.860 344 167 8 288 600 239 580 5.04e-69 241
Msa0875360 AT4G23940.1 43.098 297 148 4 318 602 404 691 3.35e-64 228
Msa0875360 AT3G05530.1 42.857 245 134 3 339 579 167 409 2.84e-53 188
Msa0875360 AT5G43010.1 42.857 238 129 3 368 602 165 398 3.96e-52 185
Msa0875360 AT1G45000.1 42.857 238 129 3 368 602 165 398 5.21e-52 184
Msa0875360 AT1G09100.1 42.449 245 135 3 339 579 166 408 6.94e-52 185
Msa0875360 AT3G09840.1 41.949 236 134 2 340 574 204 437 8.13e-51 189
Msa0875360 AT3G09840.1 38.000 250 140 4 339 583 476 715 5.10e-42 163
Msa0875360 AT5G03340.1 41.949 236 134 2 340 574 204 437 1.07e-50 188
Msa0875360 AT5G03340.1 39.914 233 134 3 340 568 477 707 1.30e-45 174
Msa0875360 AT3G53230.1 41.102 236 136 2 340 574 205 438 3.94e-50 187
Msa0875360 AT3G53230.1 40.598 234 133 3 339 568 477 708 3.57e-47 178
Msa0875360 AT3G56690.1 43.612 227 121 4 340 562 721 944 1.06e-49 187
Msa0875360 AT3G56690.1 40.000 195 116 1 371 565 413 606 6.82e-37 148
Msa0875360 AT1G53750.1 38.800 250 147 3 340 585 165 412 3.46e-47 172
Msa0875360 AT4G29040.1 40.486 247 141 3 342 584 187 431 9.19e-47 171
Msa0875360 AT5G19990.2 36.567 268 151 4 342 598 102 361 9.85e-47 169
Msa0875360 AT5G19990.1 36.567 268 151 4 342 598 160 419 2.97e-46 169
Msa0875360 AT5G19990.3 36.567 268 151 4 342 598 160 419 2.97e-46 169
Msa0875360 AT2G20140.1 40.891 247 140 4 342 584 187 431 3.62e-46 169
Msa0875360 AT5G20000.1 36.567 268 151 4 342 598 160 419 3.74e-46 169
Msa0875360 AT5G58290.1 37.349 249 147 4 330 574 145 388 1.75e-43 161
Msa0875360 AT1G53780.3 33.660 306 188 6 285 585 288 583 1.89e-43 165
Msa0875360 AT1G53780.1 33.660 306 188 6 285 585 289 584 1.97e-43 165
Msa0875360 AT1G53780.4 33.660 306 188 6 285 585 289 584 1.97e-43 165
Msa0875360 AT1G53780.2 33.660 306 188 6 285 585 310 605 2.21e-43 165
Msa0875360 AT1G79560.3 37.712 236 134 4 355 581 505 736 1.02e-42 166
Msa0875360 AT1G79560.2 37.712 236 134 4 355 581 505 736 1.08e-42 166
Msa0875360 AT1G79560.1 37.712 236 134 4 355 581 505 736 1.15e-42 166
Msa0875360 AT3G01610.1 41.071 280 140 7 342 607 232 500 2.21e-42 164
Msa0875360 AT3G01610.1 36.929 241 147 4 340 577 525 763 4.38e-32 133
Msa0875360 AT3G01610.2 41.007 278 143 6 342 607 232 500 2.32e-42 164
Msa0875360 AT3G01610.2 36.929 241 147 4 340 577 525 763 4.50e-32 133
Msa0875360 AT2G03670.1 41.739 230 127 3 340 564 283 510 1.85e-39 154
Msa0875360 AT2G03670.1 39.906 213 116 5 366 570 46 254 1.12e-31 130
Msa0875360 AT5G08470.3 37.657 239 137 4 340 574 832 1062 9.78e-37 147
Msa0875360 AT5G08470.1 37.657 239 137 4 340 574 841 1071 1.17e-36 147
Msa0875360 AT5G52882.1 38.340 253 141 7 336 583 510 752 1.79e-36 146
Msa0875360 AT1G03000.1 35.865 237 143 6 335 565 650 883 2.29e-36 146
Msa0875360 AT4G28000.3 39.914 233 131 5 336 564 513 740 4.32e-36 145
Msa0875360 AT4G28000.1 39.914 233 131 5 336 564 511 738 4.95e-36 145
Msa0875360 AT4G28000.2 39.914 233 131 5 336 564 513 740 5.54e-36 145
Msa0875360 AT3G04340.1 42.391 184 102 2 340 519 781 964 8.08e-36 145
Msa0875360 AT1G64110.1 38.865 229 132 5 340 564 513 737 6.50e-35 141
Msa0875360 AT1G64110.5 38.865 229 132 5 340 564 516 740 6.66e-35 141
Msa0875360 AT1G64110.3 38.865 229 132 5 340 564 516 740 6.66e-35 141
Msa0875360 AT1G64110.2 38.865 229 132 5 340 564 518 742 6.81e-35 141
Msa0875360 AT1G64110.4 38.865 229 132 5 340 564 518 742 6.81e-35 141
Msa0875360 AT1G02890.1 37.795 254 148 7 335 582 936 1185 1.12e-34 141
Msa0875360 AT3G15120.1 37.438 203 121 2 368 565 745 946 3.45e-34 140
Msa0875360 AT3G15120.2 37.438 203 121 2 368 565 755 956 3.46e-34 140
Msa0875360 AT3G27120.1 35.069 288 161 11 333 606 396 671 3.63e-34 139
Msa0875360 AT2G27600.1 35.510 245 142 8 332 570 124 358 1.63e-33 134
Msa0875360 AT2G45500.4 35.345 232 141 6 337 564 77 303 2.43e-33 131
Msa0875360 AT2G45500.3 35.345 232 141 6 337 564 77 303 2.43e-33 131
Msa0875360 AT4G02480.1 37.872 235 137 6 335 564 955 1185 2.78e-33 137
Msa0875360 AT1G80350.1 36.992 246 140 6 340 575 236 476 3.43e-33 134
Msa0875360 AT2G34560.2 35.060 251 154 5 340 585 109 355 5.78e-33 131
Msa0875360 AT2G34560.1 35.714 252 151 7 340 585 100 346 6.85e-33 130
Msa0875360 AT2G03670.2 39.906 213 116 5 366 570 46 254 1.42e-32 130
Msa0875360 AT2G03670.2 41.429 140 77 2 340 474 283 422 2.89e-19 91.3
Msa0875360 AT2G45500.2 35.345 232 141 6 337 564 210 436 1.63e-32 131
Msa0875360 AT2G45500.5 35.345 232 141 6 337 564 220 446 1.74e-32 132
Msa0875360 AT2G45500.1 35.345 232 141 6 337 564 214 440 1.95e-32 131
Msa0875360 AT1G50140.2 35.798 257 152 6 335 586 684 932 2.58e-32 134
Msa0875360 AT1G50140.5 35.798 257 152 6 335 586 684 932 2.58e-32 134
Msa0875360 AT1G50140.3 35.798 257 152 6 335 586 706 954 2.78e-32 134
Msa0875360 AT1G50140.1 35.798 257 152 6 335 586 706 954 2.78e-32 134
Msa0875360 AT1G50140.4 35.798 257 152 6 335 586 706 954 2.78e-32 134
Msa0875360 AT3G19740.1 34.387 253 153 6 335 582 696 940 1.10e-31 132
Msa0875360 AT4G24860.3 37.826 230 134 6 335 559 810 1035 1.37e-31 132
Msa0875360 AT4G24860.1 37.826 230 134 6 335 559 812 1037 1.44e-31 132
Msa0875360 AT4G24860.2 37.826 230 134 6 335 559 808 1033 1.52e-31 131
Msa0875360 AT4G24860.4 37.826 230 134 6 335 559 785 1010 1.61e-31 131
Msa0875360 AT1G05910.1 35.458 251 153 4 337 580 375 623 2.26e-31 131
Msa0875360 AT5G53540.1 36.245 229 138 4 340 564 84 308 9.12e-31 125
Msa0875360 AT4G27680.1 34.615 234 145 4 335 564 76 305 8.38e-30 122
Msa0875360 AT4G04910.1 34.914 232 131 6 370 586 244 470 1.95e-26 115
Msa0875360 AT1G62130.2 34.783 253 134 8 335 583 738 963 2.85e-26 115
Msa0875360 AT1G62130.1 34.783 253 134 8 335 583 745 970 3.18e-26 115
Msa0875360 AT1G45000.2 49.091 110 53 1 368 474 165 274 3.80e-26 110
Msa0875360 AT4G04180.2 32.599 227 136 5 340 556 311 530 5.93e-26 113
Msa0875360 AT4G04180.1 32.599 227 136 5 340 556 316 535 6.34e-26 113
Msa0875360 AT5G08470.2 38.000 150 86 2 340 485 841 987 2.76e-21 99.4
Msa0875360 AT1G02890.2 32.677 254 133 8 335 582 936 1157 7.36e-21 98.2
Msa0875360 AT5G17740.1 26.829 246 146 5 368 599 237 462 1.15e-13 74.3
Msa0875360 AT5G17730.1 31.053 190 103 7 338 509 200 379 1.62e-12 70.5

Find 153 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCAACTGTCTGACTATT+AGG 0.199018 6_1:+11910777 None:intergenic
GCTATTGAAAGAGCAAAATT+TGG 0.224551 6_1:-11906827 Msa0875360:CDS
ACTGGCAGATACTGTGAAAA+AGG 0.271192 6_1:+11908689 None:intergenic
TCATTGAGGTTTCAACAAAA+TGG 0.272591 6_1:-11911587 Msa0875360:CDS
GAAATGATTGAATGTGAAAA+TGG 0.273624 6_1:+11911925 None:intergenic
AATAAGAAATTTGAGTATTA+TGG 0.276076 6_1:-11911629 Msa0875360:CDS
AAGCCGTTGTATTTGTTTAC+AGG 0.284997 6_1:-11906527 Msa0875360:three_prime_UTR
ATTTCCTTGCTGTACTAAAA+AGG 0.285721 6_1:+11908619 None:intergenic
CAATCATTGAATTCATGATT+TGG 0.317172 6_1:-11906677 Msa0875360:exon
GTAGCTTTGCCCCTACCTTT+TGG 0.317824 6_1:+11908793 None:intergenic
AGTGAAAATTGTTCCGTATT+CGG 0.326742 6_1:-11911276 Msa0875360:CDS
TGTTTGTTAGGAAGAATATT+AGG 0.330998 6_1:-11911376 Msa0875360:CDS
AGTAATGTCTTGCCAGTTCC+TGG 0.338717 6_1:+11908744 None:intergenic
GATGATAAGAAGAGTGATTA+TGG 0.341503 6_1:-11911521 Msa0875360:CDS
TGATTCAAATCCATCCATTT+CGG 0.359843 6_1:+11907936 None:intergenic
AACTTGCCTGATTGAGCGTT+TGG 0.362410 6_1:+11908517 None:intergenic
GCATTTGAGAGGAGTTCCTT+TGG 0.379597 6_1:-11907776 Msa0875360:CDS
ATGAGGTTGAAGTGTTTGTT+AGG 0.381184 6_1:-11911388 Msa0875360:CDS
TGTGGCAAGGGAAGATATAA+TGG 0.388759 6_1:-11906852 Msa0875360:CDS
TTTCTCCTTCCTTCTTCGTC+AGG 0.391335 6_1:+11907811 None:intergenic
CCCTTGGATGCCATCATTGA+TGG 0.392559 6_1:-11906747 Msa0875360:CDS
TGAGATTGCGGCCGAGGTTA+CGG 0.403962 6_1:-11911457 Msa0875360:CDS
AGAAGAGTGATTATGGTAAA+GGG 0.408799 6_1:-11911514 Msa0875360:CDS
TTTCGTTGAGATTGCGGCCG+AGG 0.410912 6_1:-11911463 Msa0875360:CDS
TTAGGTTTCCGCTTCTTAGC+TGG 0.413254 6_1:+11910795 None:intergenic
AGGGCTGGATCCAAGGCTTC+TGG 0.417900 6_1:+11907877 None:intergenic
GTGGAATCTTGTGGTGGAAG+AGG 0.422399 6_1:+11911979 None:intergenic
TATTAGTTATGAAGATGAAA+AGG 0.427175 6_1:-11911433 Msa0875360:CDS
TTCAATGATTGATAACCTAA+TGG 0.427719 6_1:+11906689 None:intergenic
TTTCTTTACCTTGTTGTACT+GGG 0.428267 6_1:-11911769 Msa0875360:CDS
AAGAAGAGTGATTATGGTAA+AGG 0.428461 6_1:-11911515 Msa0875360:CDS
CTTGTCGGTCCTCCAGGAAC+TGG 0.431660 6_1:-11908756 Msa0875360:CDS
CTTAGTTTGATGAGGGAAAA+GGG 0.432422 6_1:-11910948 Msa0875360:CDS
GATGACATACAAGGACCATT+AGG 0.434995 6_1:-11906704 Msa0875360:CDS
CTCGCAATCAAGTCCGAATA+CGG 0.437861 6_1:+11911263 None:intergenic
ATTAGTTATGAAGATGAAAA+GGG 0.445280 6_1:-11911432 Msa0875360:CDS
TTCTTCAATTTATTCAATGC+AGG 0.445292 6_1:+11911047 None:intergenic
TCTTAGTTTGATGAGGGAAA+AGG 0.455840 6_1:-11910949 Msa0875360:CDS
TTGTCATTGCAGCAACTAAC+CGG 0.455886 6_1:-11907900 Msa0875360:CDS
TTGATTGCGAGTCTTCGAAA+TGG 0.464901 6_1:-11911251 Msa0875360:CDS
TCTCGAGGAAAGTATTTGTA+GGG 0.465124 6_1:-11907837 Msa0875360:CDS
GAGTTCGTTGAAATGTTTGT+TGG 0.467301 6_1:-11908666 Msa0875360:CDS
CCTAGAGGAGTGTTGCTTGT+CGG 0.467543 6_1:-11908771 Msa0875360:CDS
TTTCCCTCATCAAACTAAGA+AGG 0.468514 6_1:+11910952 None:intergenic
GTTGGATTTGAAGATGTTCA+AGG 0.468812 6_1:-11910762 Msa0875360:CDS
CCCATCAATGATGGCATCCA+AGG 0.469878 6_1:+11906746 None:intergenic
TGATTGCGAGTCTTCGAAAT+GGG 0.474413 6_1:-11911250 Msa0875360:CDS
CATTGATGGGAAGAAGTGAT+AGG 0.477672 6_1:-11906733 Msa0875360:CDS
TTCTCGAGGAAAGTATTTGT+AGG 0.479629 6_1:-11907838 Msa0875360:CDS
AACTAACCGGCCAGAAGCCT+TGG 0.480710 6_1:-11907887 Msa0875360:CDS
GTGTTGCTTGTCGGTCCTCC+AGG 0.483133 6_1:-11908762 Msa0875360:CDS
AAGAAGCTTCAATGATGAAC+GGG 0.488699 6_1:-11908541 Msa0875360:CDS
AGTAGATGTTTCGATGGATA+AGG 0.488805 6_1:-11911117 Msa0875360:CDS
ACGGGACCAAACGCTCAATC+AGG 0.492720 6_1:-11908523 Msa0875360:intron
TCATCAATGAATATGATTGA+TGG 0.492788 6_1:+11908591 None:intergenic
TGAGAATGTTGAAAATGATA+AGG 0.493218 6_1:-11911168 Msa0875360:CDS
CGACCGGGACGACACAGGGC+TGG 0.495070 6_1:+11907862 None:intergenic
AGCTTGGTAAGCTGTTCCCT+TGG 0.496185 6_1:-11906763 Msa0875360:CDS
TACCTTTGATTCCTTTGATG+TGG 0.496607 6_1:-11910848 Msa0875360:CDS
ATTGTACAAGTAAATTTGAC+AGG 0.498751 6_1:+11906650 None:intergenic
TTACTTGCACGTGCAATAGC+GGG 0.501158 6_1:-11908726 Msa0875360:CDS
CTCGTGGAATACTGCCACTC+AGG 0.503338 6_1:+11910999 None:intergenic
AATAAGTGTGAACAATGAAA+AGG 0.503440 6_1:+11906622 None:intergenic
ACGACACAGGGCTGGATCCA+AGG 0.506054 6_1:+11907870 None:intergenic
GTTGAAATGTTTGTTGGAAG+AGG 0.509876 6_1:-11908660 Msa0875360:CDS
GAGAGGAGTTCCTTTGGAGG+AGG 0.513124 6_1:-11907770 Msa0875360:CDS
GAATCAATGATAAGCAACTA+AGG 0.515226 6_1:-11906805 Msa0875360:CDS
GATGTAGTTGCTGACCGAAA+TGG 0.515352 6_1:-11907950 Msa0875360:intron
AAATGATTGAATGTGAAAAT+GGG 0.518765 6_1:+11911926 None:intergenic
AAGAGTGATTATGGTAAAGG+GGG 0.519703 6_1:-11911512 Msa0875360:CDS
CCTTGGATGCCATCATTGAT+GGG 0.519963 6_1:-11906746 Msa0875360:CDS
AGAAACGACCGGGACGACAC+AGG 0.521094 6_1:+11907857 None:intergenic
ATCTTAATTACCAAAAGGTA+GGG 0.521468 6_1:-11908803 Msa0875360:CDS
GAAACGACCGGGACGACACA+GGG 0.522419 6_1:+11907858 None:intergenic
CCGACAAGCAACACTCCTCT+AGG 0.523663 6_1:+11908771 None:intergenic
GATCCAGCCCTGTGTCGTCC+CGG 0.528518 6_1:-11907865 Msa0875360:CDS
AATCTTGTGGTGGAAGAGGA+AGG 0.529777 6_1:+11911983 None:intergenic
CACTTGTTAGTAGTAGAAGT+AGG 0.531041 6_1:-11911544 Msa0875360:CDS
TTCTGCAAAAGTAGAGCTCA+TGG 0.532444 6_1:-11910733 Msa0875360:CDS
AGGGGATCTTAATTACCAAA+AGG 0.534990 6_1:-11908808 Msa0875360:CDS
ATTCCTTCTTAGTTTGATGA+GGG 0.535065 6_1:-11910955 Msa0875360:CDS
TCGGCGTATATATTATAATA+CGG 0.537481 6_1:-11911195 Msa0875360:CDS
TCACTTCTTCCCATCAATGA+TGG 0.540303 6_1:+11906737 None:intergenic
AATTCCTTCTTAGTTTGATG+AGG 0.542897 6_1:-11910956 Msa0875360:CDS
ACTTGTTAGTAGTAGAAGTA+GGG 0.546654 6_1:-11911543 Msa0875360:CDS
AGGTTTCAACAAAATGGTGT+TGG 0.547536 6_1:-11911581 Msa0875360:CDS
TAGTTTGATGAGGGAAAAGG+GGG 0.551133 6_1:-11910946 Msa0875360:CDS
AGCCACATCAAAGGAATCAA+AGG 0.552057 6_1:+11910846 None:intergenic
TTAATTGCCACAGTTACTGA+TGG 0.552662 6_1:-11907727 Msa0875360:CDS
TTTGAGAGGAGTTCCTTTGG+AGG 0.552837 6_1:-11907773 Msa0875360:CDS
GATCTTAATTACCAAAAGGT+AGG 0.556895 6_1:-11908804 Msa0875360:CDS
AAACATTTCAACGAACTCAC+TGG 0.559253 6_1:+11908671 None:intergenic
GGCTCCTCAATCTGTGTTAG+CGG 0.560045 6_1:-11910910 Msa0875360:CDS
TACTTTCCTCGAGAAACGAC+CGG 0.560952 6_1:+11907846 None:intergenic
TAGATAGTTTCATGTCTGCA+AGG 0.562996 6_1:-11908828 Msa0875360:CDS
AGATAGTTTCATGTCTGCAA+GGG 0.563490 6_1:-11908827 Msa0875360:CDS
GATGAACTTGATGCGGTTGG+TGG 0.563575 6_1:-11908573 Msa0875360:CDS
ATTGATGAACTTGATGCGGT+TGG 0.564921 6_1:-11908576 Msa0875360:CDS
GAAGAGTGATTATGGTAAAG+GGG 0.567690 6_1:-11911513 Msa0875360:CDS
ATTGTGTAGAATTCAAGAAG+TGG 0.570636 6_1:+11911960 None:intergenic
ACTTTCCTCGAGAAACGACC+GGG 0.571156 6_1:+11907847 None:intergenic
ATATTAGCTGTGCATTTGAG+AGG 0.572900 6_1:-11907787 Msa0875360:CDS
TGTTAGGAAGAATATTAGGA+CGG 0.574043 6_1:-11911372 Msa0875360:CDS
AGTAAAATAAGCAAGGAGCT+TGG 0.574154 6_1:-11906779 Msa0875360:CDS
CTGGATCCAAGGCTTCTGGC+CGG 0.574869 6_1:+11907881 None:intergenic
ATCGCCGCTAACACAGATTG+AGG 0.577228 6_1:+11910906 None:intergenic
AGTGAGAATGCTGTAAGATC+TGG 0.580335 6_1:-11911077 Msa0875360:CDS
GAGAATGCTGTAAGATCTGG+TGG 0.581579 6_1:-11911074 Msa0875360:CDS
ATTACTTGCACGTGCAATAG+CGG 0.589109 6_1:-11908727 Msa0875360:CDS
GTAGGGGAACCTGACGAAGA+AGG 0.589232 6_1:-11907820 Msa0875360:CDS
AAACCTAATAGTCAGACAGT+TGG 0.591387 6_1:-11910780 Msa0875360:CDS
AGGTAGTGAAACTGTGGCAA+GGG 0.592368 6_1:-11906864 Msa0875360:CDS
CTCGAGGAAAGTATTTGTAG+GGG 0.592820 6_1:-11907836 Msa0875360:CDS
AAGGTCTAGTAAAATAAGCA+AGG 0.598431 6_1:-11906786 Msa0875360:CDS
CTGCTAGTCCAGCTAAGAAG+CGG 0.598949 6_1:-11910803 Msa0875360:CDS
GAAGAAGCTTCAATGATGAA+CGG 0.603023 6_1:-11908542 Msa0875360:CDS
AGGAAACAAGATGACATACA+AGG 0.608187 6_1:-11906713 Msa0875360:CDS
GGGAACCTGACGAAGAAGGA+AGG 0.608258 6_1:-11907816 Msa0875360:CDS
AGAGTGATTATGGTAAAGGG+GGG 0.609298 6_1:-11911511 Msa0875360:CDS
TTAGTTTGATGAGGGAAAAG+GGG 0.610943 6_1:-11910947 Msa0875360:CDS
ATGTTAGCATCCTCCTCCAA+AGG 0.613955 6_1:+11907760 None:intergenic
CAGGTAGTGAAACTGTGGCA+AGG 0.614725 6_1:-11906865 Msa0875360:CDS
GCTTTGCTCGCTGCTCGAAG+AGG 0.615478 6_1:-11907664 Msa0875360:intron
TCTTAATTACCAAAAGGTAG+GGG 0.616122 6_1:-11908802 Msa0875360:CDS
TACTTGCACGTGCAATAGCG+GGG 0.616204 6_1:-11908725 Msa0875360:CDS
CCATCAATGATGGCATCCAA+GGG 0.617279 6_1:+11906747 None:intergenic
CTACTTCTACTACTAACAAG+TGG 0.617574 6_1:+11911545 None:intergenic
ACAGTTACTGATGGTCTCGT+AGG 0.621604 6_1:-11907718 Msa0875360:CDS
GATGCGGTTGGTGGCAAGCG+TGG 0.625586 6_1:-11908564 Msa0875360:CDS
ATTCAAGAAGTGGAATCTTG+TGG 0.629032 6_1:+11911970 None:intergenic
ACAAGTAGTAGATGTTTCGA+TGG 0.632621 6_1:-11911123 Msa0875360:CDS
AAGAAATTCTCTAAGAGACG+AGG 0.632753 6_1:-11911029 Msa0875360:CDS
CGATATATAAGCCACATCAA+AGG 0.635077 6_1:+11910837 None:intergenic
TAACCTGTAAACAAATACAA+CGG 0.637673 6_1:+11906524 None:intergenic
GATAGTTTCATGTCTGCAAG+GGG 0.647274 6_1:-11908826 Msa0875360:CDS
AATCTGTGTTAGCGGCGATG+AGG 0.652895 6_1:-11910902 Msa0875360:CDS
CAAGAAGTGGAATCTTGTGG+TGG 0.653275 6_1:+11911973 None:intergenic
ATTCATTGATGAACTTGATG+CGG 0.654455 6_1:-11908580 Msa0875360:CDS
CTCTGCAGGTAGTGAAACTG+TGG 0.666734 6_1:-11906870 Msa0875360:intron
ATAACTAATAACCGTAACCT+CGG 0.670929 6_1:+11911446 None:intergenic
TAGGAAGAATATTAGGACGG+TGG 0.679945 6_1:-11911369 Msa0875360:CDS
TAGTTGCTGACCGAAATGGA+TGG 0.680096 6_1:-11907946 Msa0875360:CDS
TACGAGACCATCAGTAACTG+TGG 0.680129 6_1:+11907720 None:intergenic
ACTTGCACGTGCAATAGCGG+GGG 0.689020 6_1:-11908724 Msa0875360:CDS
GTAGGGGCAAAGCTACCTAG+AGG 0.692537 6_1:-11908786 Msa0875360:CDS
ATTTGAATCAGAAATGAGAG+TGG 0.693418 6_1:-11907923 Msa0875360:CDS
GACGAGGTTCGATTCCTGAG+TGG 0.695014 6_1:-11911013 Msa0875360:CDS
GAGTCTTCGAAATGGGAATG+TGG 0.703259 6_1:-11911243 Msa0875360:CDS
GATGGATAAGGATATAGACA+AGG 0.709329 6_1:-11911105 Msa0875360:CDS
AATGTCTTGCCAGTTCCTGG+AGG 0.719587 6_1:+11908747 None:intergenic
TCTTCGAGCAGCGAGCAAAG+CGG 0.723854 6_1:+11907666 None:intergenic
TGCAAAAGTAGAGCTCATGG+AGG 0.758952 6_1:-11910730 Msa0875360:intron
TGATAACTGTGATCACACTG+TGG 0.773244 6_1:-11910872 Msa0875360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATATAATCTAATAAAATT+AGG - chr6_1:11908841-11908860 Msa0875360:intron 10.0%
!! AATAATTTGATAAAAAAAAC+TGG + chr6_1:11910350-11910369 None:intergenic 10.0%
!!! GTTAAAAATTAGGAATTTTA+GGG - chr6_1:11906733-11906752 Msa0875360:CDS 15.0%
!!! AATGCTATAATTTTGAAAAT+GGG - chr6_1:11906798-11906817 Msa0875360:CDS 15.0%
!! AATAAGAAATTTGAGTATTA+TGG - chr6_1:11906830-11906849 Msa0875360:CDS 15.0%
!! TAATTACTTATAACCATATT+CGG - chr6_1:11908143-11908162 Msa0875360:intron 15.0%
!!! AAACAATTAGAGTATTATAT+AGG - chr6_1:11908429-11908448 Msa0875360:intron 15.0%
!!! AACAATTAGAGTATTATATA+GGG - chr6_1:11908430-11908449 Msa0875360:intron 15.0%
!!! CTAAATGTTGTATTTTAAAA+GGG - chr6_1:11909299-11909318 Msa0875360:intron 15.0%
!!! ATTCTATATAAATTGAGTTT+TGG - chr6_1:11910922-11910941 Msa0875360:CDS 15.0%
!! ATAACATTAAAACATCTTAT+TGG - chr6_1:11911266-11911285 Msa0875360:CDS 15.0%
!! AATTTCTATTACAAAAGATA+AGG + chr6_1:11911316-11911335 None:intergenic 15.0%
!!! TCAAAACTAATTCATTTTAT+AGG + chr6_1:11911974-11911993 None:intergenic 15.0%
!!! AAATGAATTAGTTTTGATTT+TGG - chr6_1:11911977-11911996 Msa0875360:five_prime_UTR 15.0%
!! AAATGATTGAATGTGAAAAT+GGG + chr6_1:11906536-11906555 None:intergenic 20.0%
!! ACAGAATTCAACAAAAAAAT+TGG + chr6_1:11906595-11906614 None:intergenic 20.0%
!!! GATTTGATTTTGAATAGAAA+TGG - chr6_1:11906661-11906680 Msa0875360:three_prime_UTR 20.0%
!!! TTCCTAATTTTTAACCTATT+TGG + chr6_1:11906728-11906747 None:intergenic 20.0%
!!! GGTTAAAAATTAGGAATTTT+AGG - chr6_1:11906732-11906751 Msa0875360:CDS 20.0%
!!! CAATGCTATAATTTTGAAAA+TGG - chr6_1:11906797-11906816 Msa0875360:CDS 20.0%
!!! ATTTTGAAAATGGGTTTTTA+TGG - chr6_1:11906807-11906826 Msa0875360:CDS 20.0%
!!! AAAGTAGAAATTTTTCATTG+AGG - chr6_1:11906858-11906877 Msa0875360:CDS 20.0%
!! TATTAGTTATGAAGATGAAA+AGG - chr6_1:11907026-11907045 Msa0875360:intron 20.0%
!! ATTAGTTATGAAGATGAAAA+GGG - chr6_1:11907027-11907046 Msa0875360:intron 20.0%
!!! TACAAACTTTTATTCTTATG+CGG - chr6_1:11907869-11907888 Msa0875360:CDS 20.0%
!!! ATGTAATTTGTCTTTTTGAA+TGG - chr6_1:11907922-11907941 Msa0875360:CDS 20.0%
!!! AAATAAGTATAGTTTTTCCA+TGG - chr6_1:11907985-11908004 Msa0875360:intron 20.0%
!!! AATAAGTATAGTTTTTCCAT+GGG - chr6_1:11907986-11908005 Msa0875360:intron 20.0%
!! TTACTTAATTGTTTACATCT+AGG - chr6_1:11908364-11908383 Msa0875360:intron 20.0%
!! TAATTGTTTAATTGTACCTT+TGG + chr6_1:11908418-11908437 None:intergenic 20.0%
!!! ACAATTAGAGTATTATATAG+GGG - chr6_1:11908431-11908450 Msa0875360:intron 20.0%
!! TTTGTGTATCAATATACAAA+TGG - chr6_1:11908481-11908500 Msa0875360:intron 20.0%
!!! TAAAAATAAGAGAAAAGTGT+TGG + chr6_1:11908597-11908616 None:intergenic 20.0%
!! ATGGTCAAAAATTAAAGTTA+CGG + chr6_1:11908755-11908774 None:intergenic 20.0%
!!! AAGTTTAATTTGGTTTTGAT+AGG + chr6_1:11908962-11908981 None:intergenic 20.0%
!!! GCTAAATGTTGTATTTTAAA+AGG - chr6_1:11909298-11909317 Msa0875360:intron 20.0%
!!! TACAAAATTTTGATGCAATT+GGG + chr6_1:11909367-11909386 None:intergenic 20.0%
!! AATATAAAAGCAATACAGAT+TGG + chr6_1:11909433-11909452 None:intergenic 20.0%
!!! GTTTTCATCATTTCTAATTT+TGG - chr6_1:11909541-11909560 Msa0875360:intron 20.0%
!! AAATGACATAGAAAATTGAT+TGG + chr6_1:11910126-11910145 None:intergenic 20.0%
!! TTGATTTATGATTTGAATCT+TGG - chr6_1:11910144-11910163 Msa0875360:intron 20.0%
!! TTCATAATAAGATTTGATTC+AGG - chr6_1:11910252-11910271 Msa0875360:intron 20.0%
!! ATCAACGAAAAATTCTTTAA+AGG + chr6_1:11910492-11910511 None:intergenic 20.0%
!!! AAAACATCTTATTGGTTATA+TGG - chr6_1:11911274-11911293 Msa0875360:CDS 20.0%
!! AATATCATCATTTAATGTGA+AGG + chr6_1:11911508-11911527 None:intergenic 20.0%
!! AAAAAAATTGTTTGCATACA+AGG + chr6_1:11911864-11911883 None:intergenic 20.0%
! GAAATGATTGAATGTGAAAA+TGG + chr6_1:11906537-11906556 None:intergenic 25.0%
! CACCAAATAGGTTAAAAATT+AGG - chr6_1:11906723-11906742 Msa0875360:CDS 25.0%
!!! TGTTGAATCTGTTTTAAATG+AGG - chr6_1:11907054-11907073 Msa0875360:intron 25.0%
!! TGTTTGTTAGGAAGAATATT+AGG - chr6_1:11907083-11907102 Msa0875360:intron 25.0%
!!! TTTTGAAGTTTACTTCACTT+CGG - chr6_1:11907158-11907177 Msa0875360:intron 25.0%
! TCGGCGTATATATTATAATA+CGG - chr6_1:11907264-11907283 Msa0875360:intron 25.0%
! TGAGAATGTTGAAAATGATA+AGG - chr6_1:11907291-11907310 Msa0875360:intron 25.0%
! TTCTTCAATTTATTCAATGC+AGG + chr6_1:11907415-11907434 None:intergenic 25.0%
!! TACTCAAAGCTTTTATGTTT+TGG + chr6_1:11908050-11908069 None:intergenic 25.0%
! GAGATAAAAAATTCCGAATA+TGG + chr6_1:11908159-11908178 None:intergenic 25.0%
! TATCTAGATAGATAGTCAAA+TGG + chr6_1:11908204-11908223 None:intergenic 25.0%
!! CAATTAGAGTATTATATAGG+GGG - chr6_1:11908432-11908451 Msa0875360:intron 25.0%
! AAACTGAATCTCATAAAACA+GGG + chr6_1:11908631-11908650 None:intergenic 25.0%
! TAAACTGAATCTCATAAAAC+AGG + chr6_1:11908632-11908651 None:intergenic 25.0%
! TCAGTTTAATCATTATGCTT+CGG - chr6_1:11908644-11908663 Msa0875360:CDS 25.0%
!!! GTTTTTCAGTTTGTTGATTT+TGG + chr6_1:11908898-11908917 None:intergenic 25.0%
! ATATTTATTTGATCCTTCCT+CGG - chr6_1:11909167-11909186 Msa0875360:intron 25.0%
!! TTGTAATTTTATCACTCAAC+CGG + chr6_1:11909263-11909282 None:intergenic 25.0%
!!! CTACAAAATTTTGATGCAAT+TGG + chr6_1:11909368-11909387 None:intergenic 25.0%
! ATCATTCAATGAATACAACA+CGG + chr6_1:11909408-11909427 None:intergenic 25.0%
! ATAGTCACAATTCAAAGAAA+CGG + chr6_1:11909459-11909478 None:intergenic 25.0%
! TTTCTTTGAATTGTGACTAT+TGG - chr6_1:11909459-11909478 Msa0875360:intron 25.0%
! TAGAAATGATGAAAACGTAA+AGG + chr6_1:11909537-11909556 None:intergenic 25.0%
! ATGAAACTATCTACAAATCA+GGG + chr6_1:11909624-11909643 None:intergenic 25.0%
! ATCTTAATTACCAAAAGGTA+GGG - chr6_1:11909656-11909675 Msa0875360:intron 25.0%
! TCATCAATGAATATGATTGA+TGG + chr6_1:11909871-11909890 None:intergenic 25.0%
! CAAAGTTGACAAAAAAAAAG+TGG + chr6_1:11910098-11910117 None:intergenic 25.0%
! TGATTCAGGATTTGAAAAAT+AGG - chr6_1:11910266-11910285 Msa0875360:intron 25.0%
! ACATCTAAATTGTTTGACAA+TGG + chr6_1:11910327-11910346 None:intergenic 25.0%
! TTTAGTATATACTGTCTACA+TGG - chr6_1:11910384-11910403 Msa0875360:intron 25.0%
! TAAATATTCAACGTGTTCAT+TGG - chr6_1:11910411-11910430 Msa0875360:intron 25.0%
! TTGACCGTATATTATTAACT+TGG - chr6_1:11910889-11910908 Msa0875360:CDS 25.0%
! TGACCGTATATTATTAACTT+GGG - chr6_1:11910890-11910909 Msa0875360:CDS 25.0%
! TCACCCAAGTTAATAATATA+CGG + chr6_1:11910896-11910915 None:intergenic 25.0%
!! TAAAATCAAAGAGTGTATGA+AGG - chr6_1:11911005-11911024 Msa0875360:CDS 25.0%
!! TCTGAAGTAGTTATATCTAA+GGG - chr6_1:11911138-11911157 Msa0875360:CDS 25.0%
!! TGATGTATTTGAGTTAACTA+TGG - chr6_1:11911172-11911191 Msa0875360:CDS 25.0%
!! ATGTTATTCTAAAGAGCTTA+TGG + chr6_1:11911253-11911272 None:intergenic 25.0%
!!! GAAAGCATTTATGATATAAG+CGG - chr6_1:11911359-11911378 Msa0875360:CDS 25.0%
!! TTCAATGATTGATAACCTAA+TGG + chr6_1:11911773-11911792 None:intergenic 25.0%
! CAATCATTGAATTCATGATT+TGG - chr6_1:11911782-11911801 Msa0875360:CDS 25.0%
! ATTGTACAAGTAAATTTGAC+AGG + chr6_1:11911812-11911831 None:intergenic 25.0%
! AATAAGTGTGAACAATGAAA+AGG + chr6_1:11911840-11911859 None:intergenic 25.0%
! TAACCTGTAAACAAATACAA+CGG + chr6_1:11911938-11911957 None:intergenic 25.0%
ATTGTGTAGAATTCAAGAAG+TGG + chr6_1:11906502-11906521 None:intergenic 30.0%
!! TTTTCTTTACCTTGTTGTAC+TGG - chr6_1:11906689-11906708 Msa0875360:CDS 30.0%
! TTTCTTTACCTTGTTGTACT+GGG - chr6_1:11906690-11906709 Msa0875360:CDS 30.0%
!!! AGGAATTTTAGGGTTTATAG+AGG - chr6_1:11906743-11906762 Msa0875360:CDS 30.0%
TCATTGAGGTTTCAACAAAA+TGG - chr6_1:11906872-11906891 Msa0875360:intron 30.0%
! ACTTGTTAGTAGTAGAAGTA+GGG - chr6_1:11906916-11906935 Msa0875360:intron 30.0%
GATGATAAGAAGAGTGATTA+TGG - chr6_1:11906938-11906957 Msa0875360:intron 30.0%
AAGAAGAGTGATTATGGTAA+AGG - chr6_1:11906944-11906963 Msa0875360:intron 30.0%
AGAAGAGTGATTATGGTAAA+GGG - chr6_1:11906945-11906964 Msa0875360:intron 30.0%
ATAACTAATAACCGTAACCT+CGG + chr6_1:11907016-11907035 None:intergenic 30.0%
TGTTAGGAAGAATATTAGGA+CGG - chr6_1:11907087-11907106 Msa0875360:intron 30.0%
AGTGAAAATTGTTCCGTATT+CGG - chr6_1:11907183-11907202 Msa0875360:intron 30.0%
!!! GAGAAAGTTTTAGTTGAAGA+GGG - chr6_1:11907238-11907257 Msa0875360:intron 30.0%
!!! AGAAAGTTTTAGTTGAAGAG+GGG - chr6_1:11907239-11907258 Msa0875360:intron 30.0%
! AATTCCTTCTTAGTTTGATG+AGG - chr6_1:11907503-11907522 Msa0875360:intron 30.0%
! ATTCCTTCTTAGTTTGATGA+GGG - chr6_1:11907504-11907523 Msa0875360:intron 30.0%
! AGGTAACAATCTCATCTTTT+AGG - chr6_1:11907749-11907768 Msa0875360:CDS 30.0%
CCTGATGAGATAAATATCAT+TGG + chr6_1:11907825-11907844 None:intergenic 30.0%
CCAATGATATTTATCTCATC+AGG - chr6_1:11907822-11907841 Msa0875360:CDS 30.0%
!! GTTTCTAGTATTTCGTTAAC+TGG - chr6_1:11907846-11907865 Msa0875360:CDS 30.0%
! AATGGTTAAGTAAGACCTTT+TGG - chr6_1:11907940-11907959 Msa0875360:CDS 30.0%
CATCTTTGTATGTTACCAAA+AGG + chr6_1:11907958-11907977 None:intergenic 30.0%
!! CTTTTGGTAACATACAAAGA+TGG - chr6_1:11907956-11907975 Msa0875360:intron 30.0%
!! ATAAAAGCTTTGAGTATCAG+AGG - chr6_1:11908054-11908073 Msa0875360:intron 30.0%
AGAAAGTTCAACTAACTTCT+TGG - chr6_1:11908080-11908099 Msa0875360:intron 30.0%
TTCAACTAACTTCTTGGTTT+AGG - chr6_1:11908086-11908105 Msa0875360:intron 30.0%
AAGTAAATCATATATTCCCG+AGG - chr6_1:11908280-11908299 Msa0875360:intron 30.0%
TCTTTGAATCACAAAATGTC+AGG - chr6_1:11908318-11908337 Msa0875360:intron 30.0%
AACTGAATCTCATAAAACAG+GGG + chr6_1:11908630-11908649 None:intergenic 30.0%
GTCAAAAATTAAAGTTACGG+TGG + chr6_1:11908752-11908771 None:intergenic 30.0%
TGACACACACAAGTTTAATT+TGG + chr6_1:11908972-11908991 None:intergenic 30.0%
CAATCTATAGCAGTTTGAAT+TGG + chr6_1:11909228-11909247 None:intergenic 30.0%
CAATTCAAACTGCTATAGAT+TGG - chr6_1:11909226-11909245 Msa0875360:intron 30.0%
! TTAAAAGGGTATAGTACATG+TGG - chr6_1:11909313-11909332 Msa0875360:intron 30.0%
!!! TCAACTCGCTATAGTTTTAA+GGG + chr6_1:11909496-11909515 None:intergenic 30.0%
!! TTCAACTCGCTATAGTTTTA+AGG + chr6_1:11909497-11909516 None:intergenic 30.0%
CATGAAACTATCTACAAATC+AGG + chr6_1:11909625-11909644 None:intergenic 30.0%
GATCTTAATTACCAAAAGGT+AGG - chr6_1:11909655-11909674 Msa0875360:intron 30.0%
TCTTAATTACCAAAAGGTAG+GGG - chr6_1:11909657-11909676 Msa0875360:intron 30.0%
! ATTTCCTTGCTGTACTAAAA+AGG + chr6_1:11909843-11909862 None:intergenic 30.0%
ATTCATTGATGAACTTGATG+CGG - chr6_1:11909879-11909898 Msa0875360:intron 30.0%
TCAATATCTTAAGATGCATG+TGG - chr6_1:11910018-11910037 Msa0875360:intron 30.0%
GGCTACATTAAGTTTAAAAG+AGG + chr6_1:11910073-11910092 None:intergenic 30.0%
GTTGACAAAAAAAAAGTGGT+TGG + chr6_1:11910094-11910113 None:intergenic 30.0%
GATTCAAATCATGAATCAGA+AGG + chr6_1:11910292-11910311 None:intergenic 30.0%
TGATTCAAATCCATCCATTT+CGG + chr6_1:11910526-11910545 None:intergenic 30.0%
ATTTGAATCAGAAATGAGAG+TGG - chr6_1:11910536-11910555 Msa0875360:intron 30.0%
!! AGCTGATTTTATATGCTATC+TGG - chr6_1:11911050-11911069 Msa0875360:CDS 30.0%
!! GCTGATTTTATATGCTATCT+GGG - chr6_1:11911051-11911070 Msa0875360:CDS 30.0%
!! CTCTGAAGTAGTTATATCTA+AGG - chr6_1:11911137-11911156 Msa0875360:CDS 30.0%
GCTATTGAAAGAGCAAAATT+TGG - chr6_1:11911632-11911651 Msa0875360:CDS 30.0%
GAATCAATGATAAGCAACTA+AGG - chr6_1:11911654-11911673 Msa0875360:CDS 30.0%
AAGGTCTAGTAAAATAAGCA+AGG - chr6_1:11911673-11911692 Msa0875360:CDS 30.0%
ATTCAAGAAGTGGAATCTTG+TGG + chr6_1:11906492-11906511 None:intergenic 35.0%
AAAAATGACCCAGTACAACA+AGG + chr6_1:11906701-11906720 None:intergenic 35.0%
!!! GGTCATTTTTGACACCAAAT+AGG - chr6_1:11906711-11906730 Msa0875360:CDS 35.0%
AGGTTTCAACAAAATGGTGT+TGG - chr6_1:11906878-11906897 Msa0875360:intron 35.0%
CTACTTCTACTACTAACAAG+TGG + chr6_1:11906917-11906936 None:intergenic 35.0%
! CACTTGTTAGTAGTAGAAGT+AGG - chr6_1:11906915-11906934 Msa0875360:intron 35.0%
GAAGAGTGATTATGGTAAAG+GGG - chr6_1:11906946-11906965 Msa0875360:intron 35.0%
AAGAGTGATTATGGTAAAGG+GGG - chr6_1:11906947-11906966 Msa0875360:intron 35.0%
! AGAGATTTTCGTTGAGATTG+CGG - chr6_1:11906990-11907009 Msa0875360:intron 35.0%
! ATGAGGTTGAAGTGTTTGTT+AGG - chr6_1:11907071-11907090 Msa0875360:intron 35.0%
! GAATACGGAACAATTTTCAC+TGG + chr6_1:11907184-11907203 None:intergenic 35.0%
!!! GGAGAAAGTTTTAGTTGAAG+AGG - chr6_1:11907237-11907256 Msa0875360:intron 35.0%
ACAAGTAGTAGATGTTTCGA+TGG - chr6_1:11907336-11907355 Msa0875360:intron 35.0%
AGTAGATGTTTCGATGGATA+AGG - chr6_1:11907342-11907361 Msa0875360:intron 35.0%
GATGGATAAGGATATAGACA+AGG - chr6_1:11907354-11907373 Msa0875360:intron 35.0%
! AAGAAATTCTCTAAGAGACG+AGG - chr6_1:11907430-11907449 Msa0875360:intron 35.0%
!! GTCATGATCTATTTTTCTCG+TGG + chr6_1:11907479-11907498 None:intergenic 35.0%
TTTCCCTCATCAAACTAAGA+AGG + chr6_1:11907510-11907529 None:intergenic 35.0%
! TCTTAGTTTGATGAGGGAAA+AGG - chr6_1:11907510-11907529 Msa0875360:intron 35.0%
! CTTAGTTTGATGAGGGAAAA+GGG - chr6_1:11907511-11907530 Msa0875360:intron 35.0%
! TTAGTTTGATGAGGGAAAAG+GGG - chr6_1:11907512-11907531 Msa0875360:intron 35.0%
TACCTTTGATTCCTTTGATG+TGG - chr6_1:11907611-11907630 Msa0875360:intron 35.0%
CGATATATAAGCCACATCAA+AGG + chr6_1:11907625-11907644 None:intergenic 35.0%
AAACCTAATAGTCAGACAGT+TGG - chr6_1:11907679-11907698 Msa0875360:CDS 35.0%
AATCCAACTGTCTGACTATT+AGG + chr6_1:11907685-11907704 None:intergenic 35.0%
GTTGGATTTGAAGATGTTCA+AGG - chr6_1:11907697-11907716 Msa0875360:CDS 35.0%
TTCCATGGGATTATAATCAG+TGG - chr6_1:11908000-11908019 Msa0875360:intron 35.0%
! TACCACTGATTATAATCCCA+TGG + chr6_1:11908005-11908024 None:intergenic 35.0%
!!! CAGTGGTAGATTTTAGCTTT+TGG - chr6_1:11908017-11908036 Msa0875360:intron 35.0%
!!! GTAGATTTTAGCTTTTGGCA+CGG - chr6_1:11908022-11908041 Msa0875360:intron 35.0%
!!! GGATTTTTGAGATGTGACAT+TGG - chr6_1:11908107-11908126 Msa0875360:intron 35.0%
! TTAGAGTATTATATAGGGGG+TGG - chr6_1:11908435-11908454 Msa0875360:intron 35.0%
CTAAGAATCGTGATTAGCAA+TGG + chr6_1:11908514-11908533 None:intergenic 35.0%
AAAATTAAAGTTACGGTGGC+AGG + chr6_1:11908748-11908767 None:intergenic 35.0%
ACTGTAAACCTCACCTATAT+AGG - chr6_1:11908805-11908824 Msa0875360:CDS 35.0%
CTGTAAACCTCACCTATATA+GGG - chr6_1:11908806-11908825 Msa0875360:CDS 35.0%
TGTAAACCTCACCTATATAG+GGG - chr6_1:11908807-11908826 Msa0875360:CDS 35.0%
ATTTATGAGCACCCCTATAT+AGG + chr6_1:11908821-11908840 None:intergenic 35.0%
!!! TTACTTTTTTCTTCCGAGGA+AGG + chr6_1:11909183-11909202 None:intergenic 35.0%
!!! GTCTTTACTTTTTTCTTCCG+AGG + chr6_1:11909187-11909206 None:intergenic 35.0%
TAAAGACTTAAACCGAGACA+AGG - chr6_1:11909200-11909219 Msa0875360:intron 35.0%
TTTGAATTGGATCCTTGTCT+CGG + chr6_1:11909215-11909234 None:intergenic 35.0%
! TAGATTGGATTAGAGTGAAC+CGG - chr6_1:11909241-11909260 Msa0875360:intron 35.0%
TAGATAGTTTCATGTCTGCA+AGG - chr6_1:11909631-11909650 Msa0875360:intron 35.0%
AGATAGTTTCATGTCTGCAA+GGG - chr6_1:11909632-11909651 Msa0875360:intron 35.0%
AGGGGATCTTAATTACCAAA+AGG - chr6_1:11909651-11909670 Msa0875360:intron 35.0%
AAACATTTCAACGAACTCAC+TGG + chr6_1:11909791-11909810 None:intergenic 35.0%
GAGTTCGTTGAAATGTTTGT+TGG - chr6_1:11909793-11909812 Msa0875360:intron 35.0%
! GTTGAAATGTTTGTTGGAAG+AGG - chr6_1:11909799-11909818 Msa0875360:intron 35.0%
GAAGAAGCTTCAATGATGAA+CGG - chr6_1:11909917-11909936 Msa0875360:intron 35.0%
AAGAAGCTTCAATGATGAAC+GGG - chr6_1:11909918-11909937 Msa0875360:intron 35.0%
GCAACAATTGATTGAACTCA+TGG - chr6_1:11909992-11910011 Msa0875360:intron 35.0%
! TTCTTTAAAGGTCAGCTTAG+AGG + chr6_1:11910480-11910499 None:intergenic 35.0%
!! TTCTCGAGGAAAGTATTTGT+AGG - chr6_1:11910621-11910640 Msa0875360:intron 35.0%
!! TCTCGAGGAAAGTATTTGTA+GGG - chr6_1:11910622-11910641 Msa0875360:intron 35.0%
ATATTAGCTGTGCATTTGAG+AGG - chr6_1:11910672-11910691 Msa0875360:intron 35.0%
TTAATTGCCACAGTTACTGA+TGG - chr6_1:11910732-11910751 Msa0875360:CDS 35.0%
ATCATGTCACATAAGCACTT+AGG + chr6_1:11911412-11911431 None:intergenic 35.0%
TGAAGGTGAAAAGTCAATGA+AGG + chr6_1:11911491-11911510 None:intergenic 35.0%
AGTAAAATAAGCAAGGAGCT+TGG - chr6_1:11911680-11911699 Msa0875360:CDS 35.0%
AGGAAACAAGATGACATACA+AGG - chr6_1:11911746-11911765 Msa0875360:CDS 35.0%
AAGCCGTTGTATTTGTTTAC+AGG - chr6_1:11911932-11911951 Msa0875360:five_prime_UTR 35.0%
AGAGTGATTATGGTAAAGGG+GGG - chr6_1:11906948-11906967 Msa0875360:intron 40.0%
TAGGAAGAATATTAGGACGG+TGG - chr6_1:11907090-11907109 Msa0875360:intron 40.0%
TTGATTGCGAGTCTTCGAAA+TGG - chr6_1:11907208-11907227 Msa0875360:intron 40.0%
TGATTGCGAGTCTTCGAAAT+GGG - chr6_1:11907209-11907228 Msa0875360:intron 40.0%
!! TTTTAGTTGAAGAGGGGTCT+CGG - chr6_1:11907245-11907264 Msa0875360:intron 40.0%
AGTGAGAATGCTGTAAGATC+TGG - chr6_1:11907382-11907401 Msa0875360:intron 40.0%
TAGTTTGATGAGGGAAAAGG+GGG - chr6_1:11907513-11907532 Msa0875360:intron 40.0%
TGATAACTGTGATCACACTG+TGG - chr6_1:11907587-11907606 Msa0875360:intron 40.0%
AGCCACATCAAAGGAATCAA+AGG + chr6_1:11907616-11907635 None:intergenic 40.0%
TTCTGCAAAAGTAGAGCTCA+TGG - chr6_1:11907726-11907745 Msa0875360:CDS 40.0%
CTTTGGTACCACAAAAGCAA+GGG + chr6_1:11908401-11908420 None:intergenic 40.0%
TATATAGGGGGTGGTGTTTA+AGG - chr6_1:11908444-11908463 Msa0875360:intron 40.0%
TCACGATTCTTAGCGTGTAT+TGG - chr6_1:11908521-11908540 Msa0875360:intron 40.0%
CAAAACACAAAGAGGTTCAG+AGG + chr6_1:11908551-11908570 None:intergenic 40.0%
GGAGCATAGTATTTCAGTGA+CGG + chr6_1:11908576-11908595 None:intergenic 40.0%
AATCTCATAAAACAGGGGAG+AGG + chr6_1:11908625-11908644 None:intergenic 40.0%
! GATGAAAACGTAAAGGCATG+AGG + chr6_1:11909530-11909549 None:intergenic 40.0%
TCAGGGACAGTGTCAATATA+CGG + chr6_1:11909607-11909626 None:intergenic 40.0%
GATAGTTTCATGTCTGCAAG+GGG - chr6_1:11909633-11909652 Msa0875360:intron 40.0%
ATTACTTGCACGTGCAATAG+CGG - chr6_1:11909732-11909751 Msa0875360:intron 40.0%
CTGGCAGATACTGTGAAAAA+GGG + chr6_1:11909772-11909791 None:intergenic 40.0%
ACTGGCAGATACTGTGAAAA+AGG + chr6_1:11909773-11909792 None:intergenic 40.0%
!! GAGACCTTTTTAGTACAGCA+AGG - chr6_1:11909836-11909855 Msa0875360:intron 40.0%
ATTGATGAACTTGATGCGGT+TGG - chr6_1:11909883-11909902 Msa0875360:intron 40.0%
TTGTCATTGCAGCAACTAAC+CGG - chr6_1:11910559-11910578 Msa0875360:intron 40.0%
!! CTCGAGGAAAGTATTTGTAG+GGG - chr6_1:11910623-11910642 Msa0875360:intron 40.0%
! AAGCAGTTGTGAGGCTATTT+TGG - chr6_1:11911198-11911217 Msa0875360:CDS 40.0%
ATAAGCACTTAGGCATGGTT+TGG + chr6_1:11911402-11911421 None:intergenic 40.0%
AAAAGTCAATGAAGGCAGAG+GGG + chr6_1:11911483-11911502 None:intergenic 40.0%
GAAAAGTCAATGAAGGCAGA+GGG + chr6_1:11911484-11911503 None:intergenic 40.0%
TGAAAAGTCAATGAAGGCAG+AGG + chr6_1:11911485-11911504 None:intergenic 40.0%
AATCCATATTTGCACTCTGC+AGG - chr6_1:11911575-11911594 Msa0875360:CDS 40.0%
TGTGGCAAGGGAAGATATAA+TGG - chr6_1:11911607-11911626 Msa0875360:CDS 40.0%
TCACTTCTTCCCATCAATGA+TGG + chr6_1:11911725-11911744 None:intergenic 40.0%
CATTGATGGGAAGAAGTGAT+AGG - chr6_1:11911726-11911745 Msa0875360:CDS 40.0%
GATGACATACAAGGACCATT+AGG - chr6_1:11911755-11911774 Msa0875360:CDS 40.0%
!!! CAACGGCTTCTCATTTTTTG+TGG + chr6_1:11911921-11911940 None:intergenic 40.0%
! AATCTTGTGGTGGAAGAGGA+AGG + chr6_1:11906479-11906498 None:intergenic 45.0%
CAAGAAGTGGAATCTTGTGG+TGG + chr6_1:11906489-11906508 None:intergenic 45.0%
CTCGCAATCAAGTCCGAATA+CGG + chr6_1:11907199-11907218 None:intergenic 45.0%
GAGTCTTCGAAATGGGAATG+TGG - chr6_1:11907216-11907235 Msa0875360:intron 45.0%
GAGAATGCTGTAAGATCTGG+TGG - chr6_1:11907385-11907404 Msa0875360:intron 45.0%
AAAGGGGGTTACGTTTAGCT+CGG - chr6_1:11907528-11907547 Msa0875360:intron 45.0%
TTAGGTTTCCGCTTCTTAGC+TGG + chr6_1:11907667-11907686 None:intergenic 45.0%
TGCAAAAGTAGAGCTCATGG+AGG - chr6_1:11907729-11907748 Msa0875360:CDS 45.0%
ATCTGACATATCAGAGCCTC+GGG + chr6_1:11908299-11908318 None:intergenic 45.0%
GATCTGACATATCAGAGCCT+CGG + chr6_1:11908300-11908319 None:intergenic 45.0%
!! AGCTCATACCCTTGCTTTTG+TGG - chr6_1:11908390-11908409 Msa0875360:intron 45.0%
CCTTTGGTACCACAAAAGCA+AGG + chr6_1:11908402-11908421 None:intergenic 45.0%
!! CCTTGCTTTTGTGGTACCAA+AGG - chr6_1:11908399-11908418 Msa0875360:intron 45.0%
TGACGGTGCAAAACACAAAG+AGG + chr6_1:11908559-11908578 None:intergenic 45.0%
! TTTCCCATTGGGTTGTTGGT+TGG + chr6_1:11908670-11908689 None:intergenic 45.0%
! TGTGTTTCCCATTGGGTTGT+TGG + chr6_1:11908674-11908693 None:intergenic 45.0%
ACTTGGCTGTGTTTCCCATT+GGG + chr6_1:11908681-11908700 None:intergenic 45.0%
GTTGCGTAGCAGTACACAAA+TGG + chr6_1:11908774-11908793 None:intergenic 45.0%
AGTAATGTCTTGCCAGTTCC+TGG + chr6_1:11909718-11909737 None:intergenic 45.0%
TTACTTGCACGTGCAATAGC+GGG - chr6_1:11909733-11909752 Msa0875360:intron 45.0%
AACTTGCCTGATTGAGCGTT+TGG + chr6_1:11909945-11909964 None:intergenic 45.0%
GATGTAGTTGCTGACCGAAA+TGG - chr6_1:11910509-11910528 Msa0875360:intron 45.0%
TAGTTGCTGACCGAAATGGA+TGG - chr6_1:11910513-11910532 Msa0875360:intron 45.0%
TACTTTCCTCGAGAAACGAC+CGG + chr6_1:11910616-11910635 None:intergenic 45.0%
TTTCTCCTTCCTTCTTCGTC+AGG + chr6_1:11910651-11910670 None:intergenic 45.0%
GCATTTGAGAGGAGTTCCTT+TGG - chr6_1:11910683-11910702 Msa0875360:intron 45.0%
TTTGAGAGGAGTTCCTTTGG+AGG - chr6_1:11910686-11910705 Msa0875360:intron 45.0%
ATGTTAGCATCCTCCTCCAA+AGG + chr6_1:11910702-11910721 None:intergenic 45.0%
TACGAGACCATCAGTAACTG+TGG + chr6_1:11910742-11910761 None:intergenic 45.0%
ACAGTTACTGATGGTCTCGT+AGG - chr6_1:11910741-11910760 Msa0875360:CDS 45.0%
GTCACATAAGCACTTAGGCA+TGG + chr6_1:11911407-11911426 None:intergenic 45.0%
CTACCTGCAGAGTGCAAATA+TGG + chr6_1:11911581-11911600 None:intergenic 45.0%
AGGTAGTGAAACTGTGGCAA+GGG - chr6_1:11911595-11911614 Msa0875360:CDS 45.0%
CCATCAATGATGGCATCCAA+GGG + chr6_1:11911715-11911734 None:intergenic 45.0%
CCTTGGATGCCATCATTGAT+GGG - chr6_1:11911713-11911732 Msa0875360:CDS 45.0%
! GTGGAATCTTGTGGTGGAAG+AGG + chr6_1:11906483-11906502 None:intergenic 50.0%
GATTATGGTAAAGGGGGGAG+TGG - chr6_1:11906953-11906972 Msa0875360:intron 50.0%
GTAAAGGGGGGAGTGGTAAT+AGG - chr6_1:11906960-11906979 Msa0875360:intron 50.0%
GGCTCCTCAATCTGTGTTAG+CGG - chr6_1:11907549-11907568 Msa0875360:intron 50.0%
ATCGCCGCTAACACAGATTG+AGG + chr6_1:11907556-11907575 None:intergenic 50.0%
AATCTGTGTTAGCGGCGATG+AGG - chr6_1:11907557-11907576 Msa0875360:intron 50.0%
CTGCTAGTCCAGCTAAGAAG+CGG - chr6_1:11907656-11907675 Msa0875360:intron 50.0%
CACTTGGCTGTGTTTCCCAT+TGG + chr6_1:11908682-11908701 None:intergenic 50.0%
CAATGGGAAACACAGCCAAG+TGG - chr6_1:11908680-11908699 Msa0875360:CDS 50.0%
GATGGGCAAAACACTCCAAG+AGG + chr6_1:11908722-11908741 None:intergenic 50.0%
TGAGCACCCCTATATAGGTG+AGG + chr6_1:11908816-11908835 None:intergenic 50.0%
!! GTAGCTTTGCCCCTACCTTT+TGG + chr6_1:11909669-11909688 None:intergenic 50.0%
!! CCTAGAGGAGTGTTGCTTGT+CGG - chr6_1:11909688-11909707 Msa0875360:intron 50.0%
AATGTCTTGCCAGTTCCTGG+AGG + chr6_1:11909715-11909734 None:intergenic 50.0%
TACTTGCACGTGCAATAGCG+GGG - chr6_1:11909734-11909753 Msa0875360:intron 50.0%
GATGAACTTGATGCGGTTGG+TGG - chr6_1:11909886-11909905 Msa0875360:intron 50.0%
ACTTTCCTCGAGAAACGACC+GGG + chr6_1:11910615-11910634 None:intergenic 50.0%
CTATGGCACAAGCAGTTGTG+AGG - chr6_1:11911189-11911208 Msa0875360:CDS 50.0%
CTCTGCAGGTAGTGAAACTG+TGG - chr6_1:11911589-11911608 Msa0875360:CDS 50.0%
CAGGTAGTGAAACTGTGGCA+AGG - chr6_1:11911594-11911613 Msa0875360:CDS 50.0%
AGCTTGGTAAGCTGTTCCCT+TGG - chr6_1:11911696-11911715 Msa0875360:CDS 50.0%
CCCTTGGATGCCATCATTGA+TGG - chr6_1:11911712-11911731 Msa0875360:CDS 50.0%
CCCATCAATGATGGCATCCA+AGG + chr6_1:11911716-11911735 None:intergenic 50.0%
TTTCGTTGAGATTGCGGCCG+AGG - chr6_1:11906996-11907015 Msa0875360:intron 55.0%
TGAGATTGCGGCCGAGGTTA+CGG - chr6_1:11907002-11907021 Msa0875360:intron 55.0%
GACGAGGTTCGATTCCTGAG+TGG - chr6_1:11907446-11907465 Msa0875360:intron 55.0%
CTCGTGGAATACTGCCACTC+AGG + chr6_1:11907463-11907482 None:intergenic 55.0%
TCGGCCAACCAACAACCCAA+TGG - chr6_1:11908663-11908682 Msa0875360:CDS 55.0%
CGGCCAACCAACAACCCAAT+GGG - chr6_1:11908664-11908683 Msa0875360:CDS 55.0%
CAAGAGGCCAGCCTTAAGGT+CGG + chr6_1:11908706-11908725 None:intergenic 55.0%
ACTCCAAGAGGCCAGCCTTA+AGG + chr6_1:11908710-11908729 None:intergenic 55.0%
GTTACGGTGGCAGGACAGAT+GGG + chr6_1:11908739-11908758 None:intergenic 55.0%
AGTTACGGTGGCAGGACAGA+TGG + chr6_1:11908740-11908759 None:intergenic 55.0%
GTAGGGGCAAAGCTACCTAG+AGG - chr6_1:11909673-11909692 Msa0875360:intron 55.0%
CCGACAAGCAACACTCCTCT+AGG + chr6_1:11909691-11909710 None:intergenic 55.0%
ACTTGCACGTGCAATAGCGG+GGG - chr6_1:11909735-11909754 Msa0875360:intron 55.0%
ACGGGACCAAACGCTCAATC+AGG - chr6_1:11909936-11909955 Msa0875360:intron 55.0%
AACTAACCGGCCAGAAGCCT+TGG - chr6_1:11910572-11910591 Msa0875360:intron 55.0%
GTAGGGGAACCTGACGAAGA+AGG - chr6_1:11910639-11910658 Msa0875360:intron 55.0%
GGGAACCTGACGAAGAAGGA+AGG - chr6_1:11910643-11910662 Msa0875360:intron 55.0%
! GAGAGGAGTTCCTTTGGAGG+AGG - chr6_1:11910689-11910708 Msa0875360:intron 55.0%
TCTTCGAGCAGCGAGCAAAG+CGG + chr6_1:11910796-11910815 None:intergenic 55.0%
AGTCAATGAAGGCAGAGGGG+AGG + chr6_1:11911480-11911499 None:intergenic 55.0%
CAGCCAAGTGGCCGACCTTA+AGG - chr6_1:11908692-11908711 Msa0875360:CDS 60.0%
CAGCCTTAAGGTCGGCCACT+TGG + chr6_1:11908698-11908717 None:intergenic 60.0%
CAAGTGGCCGACCTTAAGGC+TGG - chr6_1:11908696-11908715 Msa0875360:CDS 60.0%
!! CGACCTTAAGGCTGGCCTCT+TGG - chr6_1:11908704-11908723 Msa0875360:CDS 60.0%
!! GTGTTGCTTGTCGGTCCTCC+AGG - chr6_1:11909697-11909716 Msa0875360:intron 60.0%
CTTGTCGGTCCTCCAGGAAC+TGG - chr6_1:11909703-11909722 Msa0875360:intron 60.0%
CTGGATCCAAGGCTTCTGGC+CGG + chr6_1:11910581-11910600 None:intergenic 60.0%
AGGGCTGGATCCAAGGCTTC+TGG + chr6_1:11910585-11910604 None:intergenic 60.0%
ACGACACAGGGCTGGATCCA+AGG + chr6_1:11910592-11910611 None:intergenic 60.0%
GAAACGACCGGGACGACACA+GGG + chr6_1:11910604-11910623 None:intergenic 60.0%
AGAAACGACCGGGACGACAC+AGG + chr6_1:11910605-11910624 None:intergenic 60.0%
GCTTTGCTCGCTGCTCGAAG+AGG - chr6_1:11910795-11910814 Msa0875360:CDS 60.0%
GAAGGCAGAGGGGAGGCTAA+TGG + chr6_1:11911473-11911492 None:intergenic 60.0%
! CGTGCAATAGCGGGGGAAGC+AGG - chr6_1:11909742-11909761 Msa0875360:intron 65.0%
!! GATGCGGTTGGTGGCAAGCG+TGG - chr6_1:11909895-11909914 Msa0875360:intron 65.0%
GATCCAGCCCTGTGTCGTCC+CGG - chr6_1:11910594-11910613 Msa0875360:intron 65.0%
GTCGTCCCGGTCGTTTCTCG+AGG - chr6_1:11910607-11910626 Msa0875360:intron 65.0%
CGACCGGGACGACACAGGGC+TGG + chr6_1:11910600-11910619 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 11906465 11912016 11906465 ID=Msa0875360;Name=Msa0875360
chr6_1 mRNA 11906465 11912016 11906465 ID=Msa0875360-mRNA-1;Parent=Msa0875360;Name=Msa0875360-mRNA-1;_AED=0.07;_eAED=0.07;_QI=215|0.66|0.5|1|1|1|4|217|632
chr6_1 exon 11906465 11906884 11906465 ID=Msa0875360-mRNA-1:exon:3622;Parent=Msa0875360-mRNA-1
chr6_1 exon 11907665 11907965 11907665 ID=Msa0875360-mRNA-1:exon:3621;Parent=Msa0875360-mRNA-1
chr6_1 exon 11908524 11908847 11908524 ID=Msa0875360-mRNA-1:exon:3620;Parent=Msa0875360-mRNA-1
chr6_1 exon 11910731 11912016 11910731 ID=Msa0875360-mRNA-1:exon:3619;Parent=Msa0875360-mRNA-1
chr6_1 five_prime_UTR 11911802 11912016 11911802 ID=Msa0875360-mRNA-1:five_prime_utr;Parent=Msa0875360-mRNA-1
chr6_1 CDS 11910731 11911801 11910731 ID=Msa0875360-mRNA-1:cds;Parent=Msa0875360-mRNA-1
chr6_1 CDS 11908524 11908847 11908524 ID=Msa0875360-mRNA-1:cds;Parent=Msa0875360-mRNA-1
chr6_1 CDS 11907665 11907965 11907665 ID=Msa0875360-mRNA-1:cds;Parent=Msa0875360-mRNA-1
chr6_1 CDS 11906682 11906884 11906682 ID=Msa0875360-mRNA-1:cds;Parent=Msa0875360-mRNA-1
chr6_1 three_prime_UTR 11906465 11906681 11906465 ID=Msa0875360-mRNA-1:three_prime_utr;Parent=Msa0875360-mRNA-1
Gene Sequence

>Msa0875360

ATGGCTTTTTTTTCTTTACCTTGTTGTACTGGGTCATTTTTGACACCAAATAGGTTAAAAATTAGGAATTTTAGGGTTTATAGAGGTTTATGCACTTCAATGAAGTTTAAGTTTAATCAATGCTATAATTTTGAAAATGGGTTTTTATGGAATAAGAAATTTGAGTATTATGGTAGAAAAAGTAGAAATTTTTCATTGAGGTTTCAACAAAATGGTGTTGGTAATGAAACTGAGCCACTTGTTAGTAGTAGAAGTAGGGATGATAAGAAGAGTGATTATGGTAAAGGGGGGAGTGGTAATAGGTTGAAGAAGAGATTTTCGTTGAGATTGCGGCCGAGGTTACGGTTATTAGTTATGAAGATGAAAAGGGCTTCTGTTGAATCTGTTTTAAATGAGGTTGAAGTGTTTGTTAGGAAGAATATTAGGACGGTGGCGTTTGCTACATCGTTTTCGATTGTGTTTACACTTTGTTTTTTGTTTTTGAAGTTTACTTCACTTCGGCCAGTGAAAATTGTTCCGTATTCGGACTTGATTGCGAGTCTTCGAAATGGGAATGTGGAGAAAGTTTTAGTTGAAGAGGGGTCTCGGCGTATATATTATAATACGGTGTCTGAGAATGTTGAAAATGATAAGGTTTCTGATGAAGAAGAATCACAACAAGTAGTAGATGTTTCGATGGATAAGGATATAGACAAGGTTGTGAGTGAGAATGCTGTAAGATCTGGTGGAATTCCTGCATTGAATAAATTGAAGAAATTCTCTAAGAGACGAGGTTCGATTCCTGAGTGGCAGTATTCCACGAGAAAAATAGATCATGACGAAAAATTCCTTCTTAGTTTGATGAGGGAAAAGGGGGTTACGTTTAGCTCGGCTCCTCAATCTGTGTTAGCGGCGATGAGGAGTACTTTGATAACTGTGATCACACTGTGGATACCTTTGATTCCTTTGATGTGGCTTATATATCGTCAACTTTCTGCTGCTAGTCCAGCTAAGAAGCGGAAACCTAATAGTCAGACAGTTGGATTTGAAGATGTTCAAGGTGTTGATTCTGCAAAAGTAGAGCTCATGGAGATAGTTTCATGTCTGCAAGGGGATCTTAATTACCAAAAGGTAGGGGCAAAGCTACCTAGAGGAGTGTTGCTTGTCGGTCCTCCAGGAACTGGCAAGACATTACTTGCACGTGCAATAGCGGGGGAAGCAGGTGTACCCTTTTTCACAGTATCTGCCAGTGAGTTCGTTGAAATGTTTGTTGGAAGAGGTGCTGCTAGAATCAGAGACCTTTTTAGTACAGCAAGGAAATTTGCACCATCAATCATATTCATTGATGAACTTGATGCGGTTGGTGGCAAGCGTGGAAGAAGCTTCAATGATGAACGGGACCAAACGCTCAATCAGTTGCTGACCGAAATGGATGGATTTGAATCAGAAATGAGAGTGGTTGTCATTGCAGCAACTAACCGGCCAGAAGCCTTGGATCCAGCCCTGTGTCGTCCCGGTCGTTTCTCGAGGAAAGTATTTGTAGGGGAACCTGACGAAGAAGGAAGGAGAAAGATATTAGCTGTGCATTTGAGAGGAGTTCCTTTGGAGGAGGATGCTAACATCATATGTCATTTAATTGCCACAGTTACTGATGGTCTCGTAGGTGCTGATCTTGCAAACATCGTCAATGAATCCGCTTTGCTCGCTGCTCGAAGAGGTAGTGAAACTGTGGCAAGGGAAGATATAATGGAAGCTATTGAAAGAGCAAAATTTGGAATCAATGATAAGCAACTAAGGTCTAGTAAAATAAGCAAGGAGCTTGGTAAGCTGTTCCCTTGGATGCCATCATTGATGGGAAGAAGTGATAGGAAACAAGATGACATACAAGGACCATTAGGTTATCAATCATTGAATTCATGA
Protein sequence

>Msa0875360

MAFFSLPCCTGSFLTPNRLKIRNFRVYRGLCTSMKFKFNQCYNFENGFLWNKKFEYYGRKSRNFSLRFQQNGVGNETEPLVSSRSRDDKKSDYGKGGSGNRLKKRFSLRLRPRLRLLVMKMKRASVESVLNEVEVFVRKNIRTVAFATSFSIVFTLCFLFLKFTSLRPVKIVPYSDLIASLRNGNVEKVLVEEGSRRIYYNTVSENVENDKVSDEEESQQVVDVSMDKDIDKVVSENAVRSGGIPALNKLKKFSKRRGSIPEWQYSTRKIDHDEKFLLSLMREKGVTFSSAPQSVLAAMRSTLITVITLWIPLIPLMWLIYRQLSAASPAKKRKPNSQTVGFEDVQGVDSAKVELMEIVSCLQGDLNYQKVGAKLPRGVLLVGPPGTGKTLLARAIAGEAGVPFFTVSASEFVEMFVGRGAARIRDLFSTARKFAPSIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESEMRVVVIAATNRPEALDPALCRPGRFSRKVFVGEPDEEGRRKILAVHLRGVPLEEDANIICHLIATVTDGLVGADLANIVNESALLAARRGSETVAREDIMEAIERAKFGINDKQLRSSKISKELGKLFPWMPSLMGRSDRKQDDIQGPLGYQSLNS*