AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0367600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367600 MtrunA17_Chr3g0109111 96.750 400 9 2 1 396 1 400 0.0 763
Msa0367600 MtrunA17_Chr3g0109101 85.862 290 39 2 75 363 7 295 1.15e-175 491
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367600 AT3G02690.1 75.915 328 74 2 65 391 89 412 6.74e-167 474

Find 132 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCGATGCTGCTTGCTTTC+AGG 0.060471 3_1:-63292224 Msa0367600:CDS
GTACTTGCTGCTTTGTTATT+TGG 0.128361 3_1:-63291099 Msa0367600:CDS
TAATATCACCGTTCTTCTTT+TGG 0.200999 3_1:-63292417 Msa0367600:CDS
ATTGGGAATGCTAGTGCTTT+TGG 0.236775 3_1:-63288923 Msa0367600:three_prime_UTR
TACCTTCTGGTTTCAATGCT+TGG 0.281970 3_1:-63292270 Msa0367600:CDS
TCTCACCTGTACAGCTTGTT+GGG 0.293813 3_1:-63289069 Msa0367600:CDS
GTCGATGCTGCTTGCTTTCA+GGG 0.300946 3_1:-63292223 Msa0367600:CDS
GCAGAAGACTTCAGCTGGTT+TGG 0.301404 3_1:-63292182 Msa0367600:CDS
CAGAAGACTTCAGCTGGTTT+GGG 0.335089 3_1:-63292181 Msa0367600:CDS
ATTGGAGTTGTTGGAGCTGC+CGG 0.341031 3_1:-63291069 Msa0367600:CDS
GTGCCTTGGGGAAGCGTTAT+GGG 0.347839 3_1:-63292452 Msa0367600:CDS
AAAATGGCATGAACTCGAAT+TGG 0.350977 3_1:-63288941 Msa0367600:three_prime_UTR
GGTGGATTCTGTTGATTTGC+CGG 0.362199 3_1:+63292579 None:intergenic
AGAGGAAGAGCTTTACCTTC+TGG 0.363399 3_1:-63292283 Msa0367600:CDS
TGTGCCTTGGGGAAGCGTTA+TGG 0.370312 3_1:-63292453 Msa0367600:CDS
GATGGAGTGGTGGAAGAAGT+TGG 0.370796 3_1:+63292640 None:intergenic
GGTTGCGGTGACGGCGGTGA+AGG 0.376918 3_1:+63292708 None:intergenic
TTCTCACCTGTACAGCTTGT+TGG 0.377272 3_1:-63289070 Msa0367600:CDS
CATCGAAGAGACTGTGCCTT+GGG 0.379009 3_1:-63292465 Msa0367600:CDS
GGTGAGTCCATTGGAGTTGT+TGG 0.381294 3_1:-63291078 Msa0367600:CDS
GGTGGTGGTGGTTGCGGTGA+CGG 0.383927 3_1:+63292699 None:intergenic
GGAGCTGCCGGGCTTGTACT+TGG 0.385948 3_1:-63291057 Msa0367600:CDS
AAAATTGTATTTACACTGTA+AGG 0.386896 3_1:+63288845 None:intergenic
AACAATGAGCCTGCTGTAAG+TGG 0.386921 3_1:-63290052 Msa0367600:CDS
AGTTGCTCCCATCAAATGAT+AGG 0.387462 3_1:+63290739 None:intergenic
TATTGATTCACAACCTTTGA+CGG 0.403423 3_1:-63291127 Msa0367600:CDS
CACAAATGAAATATACATCT+TGG 0.403871 3_1:-63288670 Msa0367600:three_prime_UTR
CGAAAATTGAGGCAAACATT+GGG 0.404211 3_1:+63289488 None:intergenic
CCTAGCGTAACAGTAATCTA+TGG 0.407940 3_1:+63288756 None:intergenic
AGAGTAGCGGCGGGTGGTGG+TGG 0.412700 3_1:+63292687 None:intergenic
TTTCAGGGGTTTCTTGCTGA+AGG 0.419771 3_1:-63292208 Msa0367600:CDS
CACTGTGGGGAAGTGGGGAG+TGG 0.422259 3_1:-63290713 Msa0367600:CDS
TTCCTTCGTCTTCTTCGGTT+AGG 0.426662 3_1:+63292506 None:intergenic
ATGGAGTGGTGGAAGAAGTT+GGG 0.436184 3_1:+63292641 None:intergenic
CCGAAAATTGAGGCAAACAT+TGG 0.438271 3_1:+63289487 None:intergenic
TGTGGGGAAGTGGGGAGTGG+TGG 0.438538 3_1:-63290710 Msa0367600:CDS
ACCCATCCAGTTGCCATGAT+AGG 0.438828 3_1:+63290618 None:intergenic
GCGGCGGGTGGTGGTGGTTG+CGG 0.441258 3_1:+63292693 None:intergenic
TTGGAGTTGTTGGAGCTGCC+GGG 0.442346 3_1:-63291068 Msa0367600:CDS
TTACCTGCCCTATCATTTGA+TGG 0.443344 3_1:-63290747 Msa0367600:CDS
AACTTCTCACTGTGGGGAAG+TGG 0.443633 3_1:-63290720 Msa0367600:CDS
AAATGGCATGAACTCGAATT+GGG 0.452973 3_1:-63288940 Msa0367600:three_prime_UTR
GTGGAAGAAGTTGGGAATTG+AGG 0.453224 3_1:+63292649 None:intergenic
AAAGAAGTGATTCCTAATTA+CGG 0.454305 3_1:-63292373 Msa0367600:CDS
TCTGATCCTATCATGGCAAC+TGG 0.460438 3_1:-63290624 Msa0367600:CDS
TTGCAGCATATGGTTATTGG+TGG 0.460764 3_1:-63290103 Msa0367600:intron
TTGGTAGATTGCGTAGGAAC+AGG 0.464261 3_1:-63292547 Msa0367600:CDS
CATGATAGGATCAGAGTACT+TGG 0.465171 3_1:+63290632 None:intergenic
TTCAGGGGTTTCTTGCTGAA+GGG 0.468219 3_1:-63292207 Msa0367600:CDS
TTGTTATTTGGTGAGTCCAT+TGG 0.469846 3_1:-63291087 Msa0367600:CDS
GAAAGAGTAGCGGCGGGTGG+TGG 0.471413 3_1:+63292684 None:intergenic
GTTGCGGTGACGGCGGTGAA+GGG 0.482225 3_1:+63292709 None:intergenic
TTTGGAAGTGCTGTTAGCTA+TGG 0.483715 3_1:-63289974 Msa0367600:CDS
ACAAATGAAATATACATCTT+GGG 0.490952 3_1:-63288669 Msa0367600:three_prime_UTR
GTACAGTTCAACGGATGTAT+TGG 0.491468 3_1:-63290017 Msa0367600:CDS
ATGCGGAAACGGAGAGAAGA+TGG 0.492013 3_1:+63292622 None:intergenic
CTGGCCCCAACAAGCTGTAC+AGG 0.499277 3_1:+63289064 None:intergenic
GGGTTGCAGAAGACTTCAGC+TGG 0.500512 3_1:-63292187 Msa0367600:CDS
CAAGTACTCTGATCCTATCA+TGG 0.508310 3_1:-63290631 Msa0367600:CDS
ACTTCTCACTGTGGGGAAGT+GGG 0.511659 3_1:-63290719 Msa0367600:CDS
CCATAGATTACTGTTACGCT+AGG 0.515095 3_1:-63288756 Msa0367600:three_prime_UTR
GCAAGTACAGCCACCGTCAA+AGG 0.517053 3_1:+63291114 None:intergenic
ATCCTATCATGGCAACTGGA+TGG 0.518310 3_1:-63290620 Msa0367600:CDS
CAAGCCTCGTACTGCACAGA+TGG 0.525945 3_1:-63288800 Msa0367600:three_prime_UTR
GGGCTTGTACTTGGCGTCGT+AGG 0.527479 3_1:-63291048 Msa0367600:CDS
TTGGCACTGTCATGGTTCGG+TGG 0.529695 3_1:-63290659 Msa0367600:CDS
CTCACCTGTACAGCTTGTTG+GGG 0.533384 3_1:-63289068 Msa0367600:CDS
TGGAGCATGGAATGCGGAAA+CGG 0.533737 3_1:+63292611 None:intergenic
TGGCACTGTCATGGTTCGGT+GGG 0.533959 3_1:-63290658 Msa0367600:CDS
TACCTGCCCTATCATTTGAT+GGG 0.539425 3_1:-63290746 Msa0367600:CDS
CTTCTCACTGTGGGGAAGTG+GGG 0.546730 3_1:-63290718 Msa0367600:CDS
TGGGAGCAACTTCTCACTGT+GGG 0.546919 3_1:-63290727 Msa0367600:CDS
ACGGAGAGAAGATGGAGTGG+TGG 0.552388 3_1:+63292630 None:intergenic
GGCAGCTCCAACAACTCCAA+TGG 0.552770 3_1:+63291071 None:intergenic
GGTGACGGCGGTGAAGGGAG+TGG 0.554503 3_1:+63292714 None:intergenic
GCTTCTTGCAGCTCAGAGCA+TGG 0.554655 3_1:-63290685 Msa0367600:CDS
TCCTATCATGGCAACTGGAT+GGG 0.555793 3_1:-63290619 Msa0367600:intron
TTAAGACTCCCACTTACAGC+AGG 0.557189 3_1:+63290043 None:intergenic
TATAGATTATGACTTGTGTA+TGG 0.557434 3_1:-63288719 Msa0367600:three_prime_UTR
TCATCGAAGAGACTGTGCCT+TGG 0.558301 3_1:-63292466 Msa0367600:CDS
CGTAGGACTTGTGTTACTTG+AGG 0.562304 3_1:-63291031 Msa0367600:intron
CTCCCATCAAATGATAGGGC+AGG 0.566112 3_1:+63290744 None:intergenic
CAGTTGGCACTGTCATGGTT+CGG 0.567605 3_1:-63290662 Msa0367600:CDS
TACTGTAGCTGCAATATACA+TGG 0.570176 3_1:-63289038 Msa0367600:CDS
CGGCGACAGCATGGCCACGA+TGG 0.570207 3_1:+63292747 None:intergenic
CGTAGGAACAGGACAAGATG+TGG 0.575114 3_1:-63292536 Msa0367600:CDS
ATCTACCAACTCGAGGTCGG+TGG 0.578134 3_1:+63292561 None:intergenic
GCAACAAGAAGAAACCCAGC+TGG 0.582668 3_1:+63292319 None:intergenic
CATGGCAGTTGGCACTGTCA+TGG 0.583057 3_1:-63290667 Msa0367600:CDS
GTTGCTCCCATCAAATGATA+GGG 0.584772 3_1:+63290740 None:intergenic
TACGACGCCAAGTACAAGCC+CGG 0.585440 3_1:+63291050 None:intergenic
TCGATGCTGCTTGCTTTCAG+GGG 0.585931 3_1:-63292222 Msa0367600:CDS
GCAGCTCAGAGCATGGCAGT+TGG 0.587376 3_1:-63290678 Msa0367600:CDS
TGGGAATTGAGGAGTGTGAG+AGG 0.588985 3_1:+63292660 None:intergenic
CAAGTTCAATTAAGCACTTG+TGG 0.589636 3_1:-63292817 Msa0367600:five_prime_UTR
GGTGGTGGTTGCGGTGACGG+CGG 0.590085 3_1:+63292702 None:intergenic
TGATTCACAACCTTTGACGG+TGG 0.594698 3_1:-63291124 Msa0367600:CDS
ATCCAAGCATTGAAACCAGA+AGG 0.594844 3_1:+63292268 None:intergenic
GTAGCACCACGGCGACAGCA+TGG 0.599780 3_1:+63292738 None:intergenic
GCAGTCTTACCCGAAAATTG+AGG 0.600905 3_1:+63289477 None:intergenic
TAAGAATCGCGAATGCCACA+AGG 0.602922 3_1:+63290074 None:intergenic
CCATGCTCCAACAAAACCAC+CGG 0.603023 3_1:-63292598 Msa0367600:CDS
GCAATCTACCAACTCGAGGT+CGG 0.604725 3_1:+63292558 None:intergenic
TCTGCCATCTGTGCAGTACG+AGG 0.611982 3_1:+63288796 None:intergenic
AGAGGTGAAAGAGTAGCGGC+GGG 0.615126 3_1:+63292678 None:intergenic
AGAATCCACCGACCTCGAGT+TGG 0.615914 3_1:-63292566 Msa0367600:CDS
CTTGGGGAAGCGTTATGGGA+AGG 0.616732 3_1:-63292448 Msa0367600:CDS
ACAATGAGCCTGCTGTAAGT+GGG 0.625638 3_1:-63290051 Msa0367600:CDS
GAGAGGTGAAAGAGTAGCGG+CGG 0.626582 3_1:+63292677 None:intergenic
TATTGCAGCTACAGTAACAC+TGG 0.628956 3_1:+63289045 None:intergenic
AAGAATCGCGAATGCCACAA+GGG 0.631679 3_1:+63290075 None:intergenic
GTGCTTAAGATCACATATCA+CGG 0.639978 3_1:+63288879 None:intergenic
GAAAATTGAGGCAAACATTG+GGG 0.640798 3_1:+63289489 None:intergenic
TCTTAAAGAGTACAGTTCAA+CGG 0.646276 3_1:-63290026 Msa0367600:CDS
GCAGTTCCCCAAAAGAAGAA+CGG 0.646412 3_1:+63292409 None:intergenic
ATGGGAGCAACTTCTCACTG+TGG 0.649529 3_1:-63290728 Msa0367600:CDS
GGTGAAAGAGTAGCGGCGGG+TGG 0.654425 3_1:+63292681 None:intergenic
ATCGAAGAGACTGTGCCTTG+GGG 0.656879 3_1:-63292464 Msa0367600:CDS
GAAACGGAGAGAAGATGGAG+TGG 0.658221 3_1:+63292627 None:intergenic
CTTCCCATAACGCTTCCCCA+AGG 0.660357 3_1:+63292449 None:intergenic
AGAATCGCGAATGCCACAAG+GGG 0.663619 3_1:+63290076 None:intergenic
CTACGCAATCTACCAACTCG+AGG 0.669742 3_1:+63292554 None:intergenic
TGTGAGAGGTGAAAGAGTAG+CGG 0.670902 3_1:+63292674 None:intergenic
GGATTCTGTTGATTTGCCGG+TGG 0.671329 3_1:+63292582 None:intergenic
AACTCCACTCACTTCCATCG+TGG 0.678319 3_1:-63292761 Msa0367600:five_prime_UTR
CTCGAGTTGGTAGATTGCGT+AGG 0.679030 3_1:-63292553 Msa0367600:CDS
CTCCTAACCGAAGAAGACGA+AGG 0.687930 3_1:-63292508 Msa0367600:CDS
ATGGCCACGATGGAAGTGAG+TGG 0.695329 3_1:+63292757 None:intergenic
TCGTGGCCATGCTGTCGCCG+TGG 0.699440 3_1:-63292744 Msa0367600:exon
GGGAGCAACTTCTCACTGTG+GGG 0.700978 3_1:-63290726 Msa0367600:CDS
AAGGGAGTGGAGTAGCACCA+CGG 0.710930 3_1:+63292727 None:intergenic
GAATCGCGAATGCCACAAGG+GGG 0.735698 3_1:+63290077 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTATTTTTTTTT+TGG - chr3_1:63292041-63292060 Msa0367600:intron 0.0%
!!! TTTCATTATATTTATTTTTG+CGG - chr3_1:63290997-63291016 Msa0367600:intron 10.0%
!!! AATTTGTTAAAAAAAAAAAG+AGG - chr3_1:63291259-63291278 Msa0367600:intron 10.0%
!!! TTTTTTTTTTTTAAAGAAAG+TGG + chr3_1:63291714-63291733 None:intergenic 10.0%
!! AAAAATAAAAAATAAAAACC+CGG + chr3_1:63292031-63292050 None:intergenic 10.0%
!! AAATATATAATTGTAAAAGA+TGG + chr3_1:63292159-63292178 None:intergenic 10.0%
!!! AGATTTTGATTTCTAATTTT+GGG + chr3_1:63290518-63290537 None:intergenic 15.0%
!!! AAGATTTTGATTTCTAATTT+TGG + chr3_1:63290519-63290538 None:intergenic 15.0%
!!! AAAATCTTTTACATATATTG+TGG - chr3_1:63290531-63290550 Msa0367600:intron 15.0%
!! TAAAAATTACAAAATCAACT+AGG + chr3_1:63290619-63290638 None:intergenic 15.0%
!!! TCTTGATTTTTAATTGAAAA+AGG + chr3_1:63290943-63290962 None:intergenic 15.0%
!! TAAATATATGAATTTCAACA+AGG - chr3_1:63291598-63291617 Msa0367600:intron 15.0%
!!! AAAATATTTGAATTTTCTAG+AGG + chr3_1:63292280-63292299 None:intergenic 15.0%
!!! TTATATATTAAGTTTTCTAC+TGG - chr3_1:63292474-63292493 Msa0367600:CDS 15.0%
!! TAACATATCTATTCTACAAA+AGG + chr3_1:63289566-63289585 None:intergenic 20.0%
!! TACTAGTAGTACTATTAATA+AGG - chr3_1:63289584-63289603 Msa0367600:intron 20.0%
!! ACTAGTAGTACTATTAATAA+GGG - chr3_1:63289585-63289604 Msa0367600:intron 20.0%
!!! TACTTGAGGTATTTTAATTT+TGG - chr3_1:63290445-63290464 Msa0367600:intron 20.0%
!!! TAATTTTGGTTTTAACCTAA+AGG - chr3_1:63290459-63290478 Msa0367600:intron 20.0%
!!! GATAATTTTATGCTATGAAA+CGG - chr3_1:63290899-63290918 Msa0367600:intron 20.0%
!!! TTTTAAATTGTAACGCAAAA+AGG + chr3_1:63291042-63291061 None:intergenic 20.0%
!! TAGTGAAATGATGATTATAT+AGG - chr3_1:63291198-63291217 Msa0367600:intron 20.0%
!! ATAAATGAAAATTCACAGAA+AGG + chr3_1:63291572-63291591 None:intergenic 20.0%
!! AAATATGTAAGTGTACAAAA+TGG + chr3_1:63291829-63291848 None:intergenic 20.0%
!! TAATATGGTGTATTCTTTAT+GGG + chr3_1:63291886-63291905 None:intergenic 20.0%
!! ATAATATGGTGTATTCTTTA+TGG + chr3_1:63291887-63291906 None:intergenic 20.0%
!! GATACTTCAATAAATTATGA+AGG + chr3_1:63292210-63292229 None:intergenic 20.0%
!! AAAATTGTATTTACACTGTA+AGG + chr3_1:63292620-63292639 None:intergenic 20.0%
!!! TTTTGATTAGTTGTAAATTC+AGG - chr3_1:63292636-63292655 Msa0367600:CDS 20.0%
!! ACAAATGAAATATACATCTT+GGG - chr3_1:63292793-63292812 Msa0367600:five_prime_UTR 20.0%
! AAAGAAGTGATTCCTAATTA+CGG - chr3_1:63289089-63289108 Msa0367600:CDS 25.0%
! TTGAATTAGAGCTTATAGTT+AGG - chr3_1:63289639-63289658 Msa0367600:intron 25.0%
! TGAATTAGAGCTTATAGTTA+GGG - chr3_1:63289640-63289659 Msa0367600:intron 25.0%
! TTCAAATGAAGCTTACATTT+AGG - chr3_1:63289682-63289701 Msa0367600:intron 25.0%
! TCAAATGAAGCTTACATTTA+GGG - chr3_1:63289683-63289702 Msa0367600:intron 25.0%
! GTGTTTCATATTGATAGATA+TGG - chr3_1:63290187-63290206 Msa0367600:intron 25.0%
!!! TATTGATAGATATGGATTAG+AGG - chr3_1:63290195-63290214 Msa0367600:intron 25.0%
!! TTTACATATATTGTGGATTG+CGG - chr3_1:63290538-63290557 Msa0367600:intron 25.0%
!! TTTTAGCATACAATTTCTCT+TGG - chr3_1:63290634-63290653 Msa0367600:CDS 25.0%
! CTTTAGTGAATAAACATAGA+AGG + chr3_1:63290671-63290690 None:intergenic 25.0%
!! AAATTCACACTTTTGTAAAC+TGG + chr3_1:63291078-63291097 None:intergenic 25.0%
!! AGTTTACAAAAGTGTGAATT+TGG - chr3_1:63291077-63291096 Msa0367600:CDS 25.0%
!! GTTTACAAAAGTGTGAATTT+GGG - chr3_1:63291078-63291097 Msa0367600:CDS 25.0%
! GTTAAAAAAAAAAAGAGGCA+TGG - chr3_1:63291264-63291283 Msa0367600:intron 25.0%
!! TGTTTTCTTGAAAAATGAGA+GGG + chr3_1:63291740-63291759 None:intergenic 25.0%
!! ATGTTTTCTTGAAAAATGAG+AGG + chr3_1:63291741-63291760 None:intergenic 25.0%
! TACTAATTACCATATTGAAG+AGG + chr3_1:63291788-63291807 None:intergenic 25.0%
! GCACAATGTCAATAATAATA+TGG + chr3_1:63291901-63291920 None:intergenic 25.0%
! AAAATCAGAAAGACAACTAA+TGG - chr3_1:63292085-63292104 Msa0367600:intron 25.0%
! CTATGTAGCAATTCTTTAAA+CGG - chr3_1:63292108-63292127 Msa0367600:intron 25.0%
! AAATTATGAAGGATGTAAGT+GGG + chr3_1:63292199-63292218 None:intergenic 25.0%
! TAAATTATGAAGGATGTAAG+TGG + chr3_1:63292200-63292219 None:intergenic 25.0%
! ACGAAAAAATGTGTATACAA+AGG + chr3_1:63292338-63292357 None:intergenic 25.0%
!!! TGTATACACATTTTTTCGTT+TGG - chr3_1:63292339-63292358 Msa0367600:CDS 25.0%
!!! ATTTTTTCGTTTGGTATTTC+AGG - chr3_1:63292348-63292367 Msa0367600:CDS 25.0%
!!! TATTTCAGGTTTTTGTATCT+CGG - chr3_1:63292362-63292381 Msa0367600:CDS 25.0%
!! TATAGATTATGACTTGTGTA+TGG - chr3_1:63292743-63292762 Msa0367600:exon 25.0%
! CACAAATGAAATATACATCT+TGG - chr3_1:63292792-63292811 Msa0367600:five_prime_UTR 25.0%
!!! TTTGATGCTGAGATTTTTTG+TGG + chr3_1:63288683-63288702 None:intergenic 30.0%
! TAATATCACCGTTCTTCTTT+TGG - chr3_1:63289045-63289064 Msa0367600:CDS 30.0%
! AATATCACCGTTCTTCTTTT+GGG - chr3_1:63289046-63289065 Msa0367600:CDS 30.0%
AAACGTTGGATATATAAGAG+AGG - chr3_1:63289801-63289820 Msa0367600:intron 30.0%
ATAAAAACCCAAACATGTTG+GGG + chr3_1:63289933-63289952 None:intergenic 30.0%
CATAAAAACCCAAACATGTT+GGG + chr3_1:63289934-63289953 None:intergenic 30.0%
ACATAAAAACCCAAACATGT+TGG + chr3_1:63289935-63289954 None:intergenic 30.0%
ACTGTAGTGTAGTTCTTATT+TGG - chr3_1:63289979-63289998 Msa0367600:CDS 30.0%
!!! GCTTAGTTTTATGTTGTAAC+CGG - chr3_1:63290015-63290034 Msa0367600:CDS 30.0%
AAAAGTTGGGGATTCATATT+TGG + chr3_1:63290045-63290064 None:intergenic 30.0%
!! TATTGATAGACATGGATTAG+AGG + chr3_1:63290146-63290165 None:intergenic 30.0%
CAGATTCATATTGATAGACA+TGG + chr3_1:63290154-63290173 None:intergenic 30.0%
!!! GTCAACTTTTTGTGTTGATT+CGG - chr3_1:63290232-63290251 Msa0367600:intron 30.0%
!!! TGTTGCTTGTTTTAACTATC+TGG - chr3_1:63290291-63290310 Msa0367600:intron 30.0%
!! TATTGATTCACAACCTTTGA+CGG - chr3_1:63290335-63290354 Msa0367600:intron 30.0%
AACTAGGTAATTGTATGATG+TGG + chr3_1:63290603-63290622 None:intergenic 30.0%
! TATTTCTGCAACTATGATCA+GGG + chr3_1:63291135-63291154 None:intergenic 30.0%
! ATATTTCTGCAACTATGATC+AGG + chr3_1:63291136-63291155 None:intergenic 30.0%
! TCTTAAAGAGTACAGTTCAA+CGG - chr3_1:63291436-63291455 Msa0367600:intron 30.0%
! TTCTTTTACAGTGCAACTAA+AGG - chr3_1:63291515-63291534 Msa0367600:intron 30.0%
!! ATTTTGACCTTGTAACCTTA+AGG - chr3_1:63291640-63291659 Msa0367600:intron 30.0%
! TTTTGACCTTGTAACCTTAA+GGG - chr3_1:63291641-63291660 Msa0367600:intron 30.0%
! GTTTTCTTGAAAAATGAGAG+GGG + chr3_1:63291739-63291758 None:intergenic 30.0%
CATCCATGTAAAATCCAAAA+CGG - chr3_1:63291758-63291777 Msa0367600:intron 30.0%
!! TAACCGTTTTGGATTTTACA+TGG + chr3_1:63291764-63291783 None:intergenic 30.0%
!!! GGTCAATTTTTTCTCTTGAA+TGG + chr3_1:63292138-63292157 None:intergenic 30.0%
! CATGTTTGTGTATCTTTTTG+AGG - chr3_1:63292311-63292330 Msa0367600:CDS 30.0%
!! TGTATGGCAAGTTTTGTATA+TGG - chr3_1:63292759-63292778 Msa0367600:five_prime_UTR 30.0%
CAAGTTCAATTAAGCACTTG+TGG - chr3_1:63288645-63288664 Msa0367600:three_prime_UTR 35.0%
! TGTTTTTCCTTCGTCTTCTT+CGG + chr3_1:63288964-63288983 None:intergenic 35.0%
! ATATCACCGTTCTTCTTTTG+GGG - chr3_1:63289047-63289066 Msa0367600:CDS 35.0%
ACGAAAAAAGGACCGTAATT+AGG + chr3_1:63289104-63289123 None:intergenic 35.0%
! TCTTTTCGTTTAATTCCAGC+TGG - chr3_1:63289128-63289147 Msa0367600:intron 35.0%
! CTTTTCGTTTAATTCCAGCT+GGG - chr3_1:63289129-63289148 Msa0367600:intron 35.0%
AAGCTGAAAACAGCTTATGA+AGG - chr3_1:63289487-63289506 Msa0367600:CDS 35.0%
TAGAGCTTATAGTTAGGGTT+AGG - chr3_1:63289645-63289664 Msa0367600:intron 35.0%
AGAGCTTATAGTTAGGGTTA+GGG - chr3_1:63289646-63289665 Msa0367600:intron 35.0%
!!! TTGTTGCTGCTTTGTTTTGT+TGG - chr3_1:63289724-63289743 Msa0367600:intron 35.0%
!! CTTTAAGGCAATGGGTTTAT+GGG + chr3_1:63289830-63289849 None:intergenic 35.0%
!! ACTTTAAGGCAATGGGTTTA+TGG + chr3_1:63289831-63289850 None:intergenic 35.0%
! AACCCATTGCCTTAAAGTTT+TGG - chr3_1:63289833-63289852 Msa0367600:intron 35.0%
! ACCCATTGCCTTAAAGTTTT+GGG - chr3_1:63289834-63289853 Msa0367600:intron 35.0%
!! ACCCAAAACTTTAAGGCAAT+GGG + chr3_1:63289838-63289857 None:intergenic 35.0%
!! TACCCAAAACTTTAAGGCAA+TGG + chr3_1:63289839-63289858 None:intergenic 35.0%
CACTCTTACCCAAAACTTTA+AGG + chr3_1:63289845-63289864 None:intergenic 35.0%
!!! TAAAGTTTTGGGTAAGAGTG+TGG - chr3_1:63289845-63289864 Msa0367600:intron 35.0%
!! AGTTCTTATTTGGTGCACAT+TGG - chr3_1:63289989-63290008 Msa0367600:CDS 35.0%
!! AGTTCTTATTTGGTGCACAT+TGG + chr3_1:63289989-63290008 None:intergenic 35.0%
ACTGCAGTGTAGTTCTTATT+TGG + chr3_1:63290090-63290109 None:intergenic 35.0%
!! ATGGATTAGAGGAAAAGTTG+GGG + chr3_1:63290206-63290225 None:intergenic 35.0%
!! CATGGATTAGAGGAAAAGTT+GGG + chr3_1:63290136-63290155 None:intergenic 35.0%
!! ACATGGATTAGAGGAAAAGT+TGG + chr3_1:63290137-63290156 None:intergenic 35.0%
!!! CTTGTTTTAACTATCTGGCA+TGG - chr3_1:63290296-63290315 Msa0367600:intron 35.0%
!! GTACTTGCTGCTTTGTTATT+TGG - chr3_1:63290363-63290382 Msa0367600:intron 35.0%
!! TTGTTATTTGGTGAGTCCAT+TGG - chr3_1:63290375-63290394 Msa0367600:intron 35.0%
CGAATTAAGACACTTCCTTT+AGG + chr3_1:63290477-63290496 None:intergenic 35.0%
! AATTTTGGGCTGTGCTTAAA+GGG + chr3_1:63290504-63290523 None:intergenic 35.0%
! TAATTTTGGGCTGTGCTTAA+AGG + chr3_1:63290505-63290524 None:intergenic 35.0%
TTCACTAAAGCAAACACTAC+TGG - chr3_1:63290681-63290700 Msa0367600:CDS 35.0%
CCATATGCTGCAAAAGAAAA+AGG + chr3_1:63291352-63291371 None:intergenic 35.0%
! CCTTTTTCTTTTGCAGCATA+TGG - chr3_1:63291349-63291368 Msa0367600:intron 35.0%
! CTTTTGCAGCATATGGTTAT+TGG - chr3_1:63291356-63291375 Msa0367600:intron 35.0%
! ATTGAAGAGGTTAACCGTTT+TGG + chr3_1:63291775-63291794 None:intergenic 35.0%
AACGGTTAACCTCTTCAATA+TGG - chr3_1:63291776-63291795 Msa0367600:intron 35.0%
GAAAATTGAGGCAAACATTG+GGG + chr3_1:63291976-63291995 None:intergenic 35.0%
CGAAAATTGAGGCAAACATT+GGG + chr3_1:63291977-63291996 None:intergenic 35.0%
! CCAATGTTTGCCTCAATTTT+CGG - chr3_1:63291975-63291994 Msa0367600:intron 35.0%
! CAATGTTTGCCTCAATTTTC+GGG - chr3_1:63291976-63291995 Msa0367600:intron 35.0%
GTAGCAATTCTTTAAACGGA+AGG - chr3_1:63292112-63292131 Msa0367600:intron 35.0%
! TTTTTCGTACCTTTTGTCAC+CGG - chr3_1:63292249-63292268 Msa0367600:CDS 35.0%
!! GAATTTTCTAGAGGAAATGC+CGG + chr3_1:63292271-63292290 None:intergenic 35.0%
TACTGTAGCTGCAATATACA+TGG - chr3_1:63292424-63292443 Msa0367600:CDS 35.0%
ACATAACCCAGCGTTAAAAA+TGG - chr3_1:63292505-63292524 Msa0367600:CDS 35.0%
!!! TTCATGCCATTTTTAACGCT+GGG + chr3_1:63292514-63292533 None:intergenic 35.0%
AAAATGGCATGAACTCGAAT+TGG - chr3_1:63292521-63292540 Msa0367600:CDS 35.0%
AAATGGCATGAACTCGAATT+GGG - chr3_1:63292522-63292541 Msa0367600:CDS 35.0%
GTGCTTAAGATCACATATCA+CGG + chr3_1:63292586-63292605 None:intergenic 35.0%
!!! GATGCTGAGATTTTTTGTGG+TGG + chr3_1:63288680-63288699 None:intergenic 40.0%
! TTTTGTTGGAGCATGGAATG+CGG + chr3_1:63288860-63288879 None:intergenic 40.0%
CGAAAAGACGCAACGAAAAA+AGG + chr3_1:63289116-63289135 None:intergenic 40.0%
!!! GTTGCTTTTGCTGCTTTTAG+AGG - chr3_1:63289161-63289180 Msa0367600:intron 40.0%
!! TACCTTCTGGTTTCAATGCT+TGG - chr3_1:63289192-63289211 Msa0367600:intron 40.0%
!! ATCCAAGCATTGAAACCAGA+AGG + chr3_1:63289197-63289216 None:intergenic 40.0%
! AAGCTTACATTTAGGGTCAG+AGG - chr3_1:63289690-63289709 Msa0367600:intron 40.0%
ACTAGAAATGGAGGAAACGT+TGG - chr3_1:63289787-63289806 Msa0367600:intron 40.0%
!! CTTATTTGGTGCACATTGGA+TGG - chr3_1:63289993-63290012 Msa0367600:CDS 40.0%
ATGGCTTAGAGGAAAAGTTG+GGG + chr3_1:63290057-63290076 None:intergenic 40.0%
GATGGCTTAGAGGAAAAGTT+GGG + chr3_1:63290058-63290077 None:intergenic 40.0%
!! CTTATTTGGTGCACATTGGA+TGG + chr3_1:63289993-63290012 None:intergenic 40.0%
TTACCTGCCCTATCATTTGA+TGG - chr3_1:63290715-63290734 Msa0367600:CDS 40.0%
TACCTGCCCTATCATTTGAT+GGG - chr3_1:63290716-63290735 Msa0367600:CDS 40.0%
GTTGCTCCCATCAAATGATA+GGG + chr3_1:63290725-63290744 None:intergenic 40.0%
AGTTGCTCCCATCAAATGAT+AGG + chr3_1:63290726-63290745 None:intergenic 40.0%
! CATGATAGGATCAGAGTACT+TGG + chr3_1:63290833-63290852 None:intergenic 40.0%
CAAGTACTCTGATCCTATCA+TGG - chr3_1:63290831-63290850 Msa0367600:intron 40.0%
TTGTAACGCAAAAAGGCTTG+AGG + chr3_1:63291035-63291054 None:intergenic 40.0%
AAGTGTGAATTTGGGTGTGT+TGG - chr3_1:63291086-63291105 Msa0367600:CDS 40.0%
TGAAAGGTCTCTCGTTGTTT+AGG - chr3_1:63291292-63291311 Msa0367600:intron 40.0%
TTGCAGCATATGGTTATTGG+TGG - chr3_1:63291359-63291378 Msa0367600:intron 40.0%
GTACAGTTCAACGGATGTAT+TGG - chr3_1:63291445-63291464 Msa0367600:intron 40.0%
TTCCAAAAATGGACGTGTAG+AGG + chr3_1:63291475-63291494 None:intergenic 40.0%
GCTAACAGCACTTCCAAAAA+TGG + chr3_1:63291486-63291505 None:intergenic 40.0%
!! TTTGGAAGTGCTGTTAGCTA+TGG - chr3_1:63291488-63291507 Msa0367600:intron 40.0%
TCACAGAAAGGAAAAGAGAG+AGG + chr3_1:63291560-63291579 None:intergenic 40.0%
! AAGGTGTCAGTTCAGTGTTA+AGG - chr3_1:63291617-63291636 Msa0367600:intron 40.0%
CTACATCCCTTAAGGTTACA+AGG + chr3_1:63291650-63291669 None:intergenic 40.0%
GATCTAGACTACATCCCTTA+AGG + chr3_1:63291658-63291677 None:intergenic 40.0%
GATGTAGTCTAGATCACCTT+GGG - chr3_1:63291663-63291682 Msa0367600:intron 40.0%
ATGTAGTCTAGATCACCTTG+GGG - chr3_1:63291664-63291683 Msa0367600:intron 40.0%
CCGAAAATTGAGGCAAACAT+TGG + chr3_1:63291978-63291997 None:intergenic 40.0%
TAACAATGGGAAAGAGTTGC+CGG - chr3_1:63292009-63292028 Msa0367600:intron 40.0%
TATTGCAGCTACAGTAACAC+TGG + chr3_1:63292420-63292439 None:intergenic 40.0%
!!! GTTCATGCCATTTTTAACGC+TGG + chr3_1:63292515-63292534 None:intergenic 40.0%
! ATTGGGAATGCTAGTGCTTT+TGG - chr3_1:63292539-63292558 Msa0367600:CDS 40.0%
! TAGTGCTTTTGGACATGTAG+AGG - chr3_1:63292550-63292569 Msa0367600:CDS 40.0%
CCTAGCGTAACAGTAATCTA+TGG + chr3_1:63292709-63292728 None:intergenic 40.0%
CCATAGATTACTGTTACGCT+AGG - chr3_1:63292706-63292725 Msa0367600:CDS 40.0%
TGTGAGAGGTGAAAGAGTAG+CGG + chr3_1:63288791-63288810 None:intergenic 45.0%
GTGGAAGAAGTTGGGAATTG+AGG + chr3_1:63288816-63288835 None:intergenic 45.0%
! ATGGAGTGGTGGAAGAAGTT+GGG + chr3_1:63288824-63288843 None:intergenic 45.0%
!!! TGATTTGCCGGTGGTTTTGT+TGG + chr3_1:63288874-63288893 None:intergenic 45.0%
!! GGTGGATTCTGTTGATTTGC+CGG + chr3_1:63288886-63288905 None:intergenic 45.0%
TTGGTAGATTGCGTAGGAAC+AGG - chr3_1:63288915-63288934 Msa0367600:three_prime_UTR 45.0%
TTCCTTCGTCTTCTTCGGTT+AGG + chr3_1:63288959-63288978 None:intergenic 45.0%
GCAGTTCCCCAAAAGAAGAA+CGG + chr3_1:63289056-63289075 None:intergenic 45.0%
!! CTTCTTTTGGGGAACTGCAA+TGG - chr3_1:63289058-63289077 Msa0367600:CDS 45.0%
AGAGGAAGAGCTTTACCTTC+TGG - chr3_1:63289179-63289198 Msa0367600:intron 45.0%
TTTCAGGGGTTTCTTGCTGA+AGG - chr3_1:63289254-63289273 Msa0367600:intron 45.0%
TTCAGGGGTTTCTTGCTGAA+GGG - chr3_1:63289255-63289274 Msa0367600:intron 45.0%
! CAGAAGACTTCAGCTGGTTT+GGG - chr3_1:63289281-63289300 Msa0367600:intron 45.0%
! CTTACATTTAGGGTCAGAGG+TGG - chr3_1:63289693-63289712 Msa0367600:intron 45.0%
! TGTCCCACATCGACTAGAAA+TGG - chr3_1:63289775-63289794 Msa0367600:intron 45.0%
!! CCTCCATTTCTAGTCGATGT+GGG + chr3_1:63289781-63289800 None:intergenic 45.0%
!! TCCTCCATTTCTAGTCGATG+TGG + chr3_1:63289782-63289801 None:intergenic 45.0%
! GTGTGGTGTCTCTCTTTTAG+CGG - chr3_1:63289862-63289881 Msa0367600:intron 45.0%
! TGTGGTGTCTCTCTTTTAGC+GGG - chr3_1:63289863-63289882 Msa0367600:intron 45.0%
CAAACATGTTGGGGATTCTG+GGG + chr3_1:63289924-63289943 None:intergenic 45.0%
CCAAACATGTTGGGGATTCT+GGG + chr3_1:63289925-63289944 None:intergenic 45.0%
CCAGAATCCCCAACATGTTT+GGG - chr3_1:63289923-63289942 Msa0367600:intron 45.0%
!! GGGATTCATATTTGGTGCAC+CGG + chr3_1:63290037-63290056 None:intergenic 45.0%
GGATGGCTTAGAGGAAAAGT+TGG + chr3_1:63290059-63290078 None:intergenic 45.0%
AGAGGAAAAGTTGGGGATTC+TGG + chr3_1:63290050-63290069 None:intergenic 45.0%
ATCTGGCATGGATATATCGC+AGG - chr3_1:63290308-63290327 Msa0367600:intron 45.0%
TGATTCACAACCTTTGACGG+TGG - chr3_1:63290338-63290357 Msa0367600:intron 45.0%
!! CGTAGGACTTGTGTTACTTG+AGG - chr3_1:63290431-63290450 Msa0367600:intron 45.0%
TCTGATCCTATCATGGCAAC+TGG - chr3_1:63290838-63290857 Msa0367600:intron 45.0%
ATCCTATCATGGCAACTGGA+TGG - chr3_1:63290842-63290861 Msa0367600:intron 45.0%
TCCTATCATGGCAACTGGAT+GGG - chr3_1:63290843-63290862 Msa0367600:intron 45.0%
CAACTATGATCAGGGACTCA+GGG + chr3_1:63291127-63291146 None:intergenic 45.0%
! AAGAGGCATGGACATCTGAA+AGG - chr3_1:63291276-63291295 Msa0367600:intron 45.0%
CTCGTTGTTTAGGAACTCTC+TGG - chr3_1:63291302-63291321 Msa0367600:intron 45.0%
! TTAGGAACTCTCTGGAAGCT+TGG - chr3_1:63291310-63291329 Msa0367600:intron 45.0%
AAGAATCGCGAATGCCACAA+GGG + chr3_1:63291390-63291409 None:intergenic 45.0%
TAAGAATCGCGAATGCCACA+AGG + chr3_1:63291391-63291410 None:intergenic 45.0%
AACAATGAGCCTGCTGTAAG+TGG - chr3_1:63291410-63291429 Msa0367600:intron 45.0%
ACAATGAGCCTGCTGTAAGT+GGG - chr3_1:63291411-63291430 Msa0367600:intron 45.0%
TTAAGACTCCCACTTACAGC+AGG + chr3_1:63291422-63291441 None:intergenic 45.0%
! CTCCTCTACACGTCCATTTT+TGG - chr3_1:63291470-63291489 Msa0367600:intron 45.0%
GGATGTAGTCTAGATCACCT+TGG - chr3_1:63291662-63291681 Msa0367600:intron 45.0%
! CCATTTTACAACTGTCCCCA+AGG + chr3_1:63291682-63291701 None:intergenic 45.0%
CCTTGGGGACAGTTGTAAAA+TGG - chr3_1:63291679-63291698 Msa0367600:intron 45.0%
TTGTGCTTGTGATGCATTGC+AGG - chr3_1:63291915-63291934 Msa0367600:intron 45.0%
GCAGTCTTACCCGAAAATTG+AGG + chr3_1:63291988-63292007 None:intergenic 45.0%
GGGTAAGACTGCCTAACAAT+GGG - chr3_1:63291996-63292015 Msa0367600:intron 45.0%
GGCAACTCTTTCCCATTGTT+AGG + chr3_1:63292010-63292029 None:intergenic 45.0%
AACAATGGGAAAGAGTTGCC+GGG - chr3_1:63292010-63292029 Msa0367600:intron 45.0%
TTCTCACCTGTACAGCTTGT+TGG - chr3_1:63292392-63292411 Msa0367600:CDS 45.0%
! TCTCACCTGTACAGCTTGTT+GGG - chr3_1:63292393-63292412 Msa0367600:CDS 45.0%
AACTCCACTCACTTCCATCG+TGG - chr3_1:63288701-63288720 Msa0367600:three_prime_UTR 50.0%
! TGGGAATTGAGGAGTGTGAG+AGG + chr3_1:63288805-63288824 None:intergenic 50.0%
! GATGGAGTGGTGGAAGAAGT+TGG + chr3_1:63288825-63288844 None:intergenic 50.0%
GAAACGGAGAGAAGATGGAG+TGG + chr3_1:63288838-63288857 None:intergenic 50.0%
ATGCGGAAACGGAGAGAAGA+TGG + chr3_1:63288843-63288862 None:intergenic 50.0%
TGGAGCATGGAATGCGGAAA+CGG + chr3_1:63288854-63288873 None:intergenic 50.0%
CCATGCTCCAACAAAACCAC+CGG - chr3_1:63288864-63288883 Msa0367600:three_prime_UTR 50.0%
!! GGATTCTGTTGATTTGCCGG+TGG + chr3_1:63288883-63288902 None:intergenic 50.0%
GCAATCTACCAACTCGAGGT+CGG + chr3_1:63288907-63288926 None:intergenic 50.0%
CTACGCAATCTACCAACTCG+AGG + chr3_1:63288911-63288930 None:intergenic 50.0%
!! CTCGAGTTGGTAGATTGCGT+AGG - chr3_1:63288909-63288928 Msa0367600:three_prime_UTR 50.0%
CGTAGGAACAGGACAAGATG+TGG - chr3_1:63288926-63288945 Msa0367600:three_prime_UTR 50.0%
CTCCTAACCGAAGAAGACGA+AGG - chr3_1:63288954-63288973 Msa0367600:three_prime_UTR 50.0%
TCATCGAAGAGACTGTGCCT+TGG - chr3_1:63288996-63289015 Msa0367600:exon 50.0%
CATCGAAGAGACTGTGCCTT+GGG - chr3_1:63288997-63289016 Msa0367600:exon 50.0%
ATCGAAGAGACTGTGCCTTG+GGG - chr3_1:63288998-63289017 Msa0367600:exon 50.0%
!! CTTTTGGGGAACTGCAATGG+TGG - chr3_1:63289061-63289080 Msa0367600:CDS 50.0%
GCAACAAGAAGAAACCCAGC+TGG + chr3_1:63289146-63289165 None:intergenic 50.0%
! GTCGATGCTGCTTGCTTTCA+GGG - chr3_1:63289239-63289258 Msa0367600:intron 50.0%
! TCGATGCTGCTTGCTTTCAG+GGG - chr3_1:63289240-63289259 Msa0367600:intron 50.0%
GCAGAAGACTTCAGCTGGTT+TGG - chr3_1:63289280-63289299 Msa0367600:intron 50.0%
! CCCACATCGACTAGAAATGG+AGG - chr3_1:63289778-63289797 Msa0367600:intron 50.0%
CCCAGAATCCCCAACATGTT+TGG - chr3_1:63289922-63289941 Msa0367600:intron 50.0%
CCCAAACATGTTGGGGATTC+TGG + chr3_1:63289926-63289945 None:intergenic 50.0%
GTGCACATTGGATGGCTTAG+AGG + chr3_1:63290001-63290020 None:intergenic 50.0%
GGTGAGTCCATTGGAGTTGT+TGG - chr3_1:63290384-63290403 Msa0367600:intron 50.0%
ATTGGAGTTGTTGGAGCTGC+CGG - chr3_1:63290393-63290412 Msa0367600:intron 50.0%
CTCCCATCAAATGATAGGGC+AGG + chr3_1:63290721-63290740 None:intergenic 50.0%
ATGGGAGCAACTTCTCACTG+TGG - chr3_1:63290734-63290753 Msa0367600:CDS 50.0%
TGGGAGCAACTTCTCACTGT+GGG - chr3_1:63290735-63290754 Msa0367600:CDS 50.0%
AACTTCTCACTGTGGGGAAG+TGG - chr3_1:63290742-63290761 Msa0367600:CDS 50.0%
ACTTCTCACTGTGGGGAAGT+GGG - chr3_1:63290743-63290762 Msa0367600:CDS 50.0%
CAGTTGGCACTGTCATGGTT+CGG - chr3_1:63290800-63290819 Msa0367600:intron 50.0%
ACCCATCCAGTTGCCATGAT+AGG + chr3_1:63290847-63290866 None:intergenic 50.0%
GCAACTATGATCAGGGACTC+AGG + chr3_1:63291128-63291147 None:intergenic 50.0%
AGAATCGCGAATGCCACAAG+GGG + chr3_1:63291389-63291408 None:intergenic 50.0%
CGGGTAAGACTGCCTAACAA+TGG - chr3_1:63291995-63292014 Msa0367600:intron 50.0%
GAGGAAATGCCGGTGACAAA+AGG + chr3_1:63292261-63292280 None:intergenic 50.0%
!! CTCACCTGTACAGCTTGTTG+GGG - chr3_1:63292394-63292413 Msa0367600:CDS 50.0%
ATGGCCACGATGGAAGTGAG+TGG + chr3_1:63288708-63288727 None:intergenic 55.0%
AAGGGAGTGGAGTAGCACCA+CGG + chr3_1:63288738-63288757 None:intergenic 55.0%
AGAGGTGAAAGAGTAGCGGC+GGG + chr3_1:63288787-63288806 None:intergenic 55.0%
GAGAGGTGAAAGAGTAGCGG+CGG + chr3_1:63288788-63288807 None:intergenic 55.0%
ACGGAGAGAAGATGGAGTGG+TGG + chr3_1:63288835-63288854 None:intergenic 55.0%
!!! CCGGTGGTTTTGTTGGAGCA+TGG + chr3_1:63288867-63288886 None:intergenic 55.0%
AGAATCCACCGACCTCGAGT+TGG - chr3_1:63288896-63288915 Msa0367600:three_prime_UTR 55.0%
ATCTACCAACTCGAGGTCGG+TGG + chr3_1:63288904-63288923 None:intergenic 55.0%
!! TGTGCCTTGGGGAAGCGTTA+TGG - chr3_1:63289009-63289028 Msa0367600:exon 55.0%
!! GTGCCTTGGGGAAGCGTTAT+GGG - chr3_1:63289010-63289029 Msa0367600:exon 55.0%
CTTCCCATAACGCTTCCCCA+AGG + chr3_1:63289016-63289035 None:intergenic 55.0%
!! CTTGGGGAAGCGTTATGGGA+AGG - chr3_1:63289014-63289033 Msa0367600:CDS 55.0%
! CGTCGATGCTGCTTGCTTTC+AGG - chr3_1:63289238-63289257 Msa0367600:intron 55.0%
GGGTTGCAGAAGACTTCAGC+TGG - chr3_1:63289275-63289294 Msa0367600:intron 55.0%
!! CGGCAATGGGCTAAACGTCT+AGG + chr3_1:63289890-63289909 None:intergenic 55.0%
GCAAGTACAGCCACCGTCAA+AGG + chr3_1:63290351-63290370 None:intergenic 55.0%
GGCAGCTCCAACAACTCCAA+TGG + chr3_1:63290394-63290413 None:intergenic 55.0%
TTGGAGTTGTTGGAGCTGCC+GGG - chr3_1:63290394-63290413 Msa0367600:intron 55.0%
TACGACGCCAAGTACAAGCC+CGG + chr3_1:63290415-63290434 None:intergenic 55.0%
GGGAGCAACTTCTCACTGTG+GGG - chr3_1:63290736-63290755 Msa0367600:CDS 55.0%
CTTCTCACTGTGGGGAAGTG+GGG - chr3_1:63290744-63290763 Msa0367600:CDS 55.0%
GCTTCTTGCAGCTCAGAGCA+TGG - chr3_1:63290777-63290796 Msa0367600:intron 55.0%
CATGGCAGTTGGCACTGTCA+TGG - chr3_1:63290795-63290814 Msa0367600:intron 55.0%
! TTGGCACTGTCATGGTTCGG+TGG - chr3_1:63290803-63290822 Msa0367600:intron 55.0%
!! TGGCACTGTCATGGTTCGGT+GGG - chr3_1:63290804-63290823 Msa0367600:intron 55.0%
! TATTGGTGGTCTCCCCCTTG+TGG - chr3_1:63291373-63291392 Msa0367600:intron 55.0%
GAATCGCGAATGCCACAAGG+GGG + chr3_1:63291388-63291407 None:intergenic 55.0%
CAAGCCTCGTACTGCACAGA+TGG - chr3_1:63292662-63292681 Msa0367600:CDS 55.0%
TCTGCCATCTGTGCAGTACG+AGG + chr3_1:63292669-63292688 None:intergenic 55.0%
!! ATTCTGGGGAGCGCTTGGAG+CGG + chr3_1:63289910-63289929 None:intergenic 60.0%
GGGCTTGTACTTGGCGTCGT+AGG - chr3_1:63290414-63290433 Msa0367600:intron 60.0%
GCAGCTCAGAGCATGGCAGT+TGG - chr3_1:63290784-63290803 Msa0367600:intron 60.0%
CTGGCCCCAACAAGCTGTAC+AGG + chr3_1:63292401-63292420 None:intergenic 60.0%
GTAGCACCACGGCGACAGCA+TGG + chr3_1:63288727-63288746 None:intergenic 65.0%
! GTTGCGGTGACGGCGGTGAA+GGG + chr3_1:63288756-63288775 None:intergenic 65.0%
!! GGTGGTGGTGGTTGCGGTGA+CGG + chr3_1:63288766-63288785 None:intergenic 65.0%
GAAAGAGTAGCGGCGGGTGG+TGG + chr3_1:63288781-63288800 None:intergenic 65.0%
GGTGAAAGAGTAGCGGCGGG+TGG + chr3_1:63288784-63288803 None:intergenic 65.0%
! GGAGCGCTTGGAGCGGCAAT+GGG + chr3_1:63289903-63289922 None:intergenic 65.0%
!! TGGGGATTCTGGGGAGCGCT+TGG + chr3_1:63289915-63289934 None:intergenic 65.0%
GGAGCTGCCGGGCTTGTACT+TGG - chr3_1:63290405-63290424 Msa0367600:intron 65.0%
CACTGTGGGGAAGTGGGGAG+TGG - chr3_1:63290749-63290768 Msa0367600:CDS 65.0%
TGTGGGGAAGTGGGGAGTGG+TGG - chr3_1:63290752-63290771 Msa0367600:intron 65.0%
CGGCGACAGCATGGCCACGA+TGG + chr3_1:63288718-63288737 None:intergenic 70.0%
TCGTGGCCATGCTGTCGCCG+TGG - chr3_1:63288718-63288737 Msa0367600:three_prime_UTR 70.0%
! GGTGACGGCGGTGAAGGGAG+TGG + chr3_1:63288751-63288770 None:intergenic 70.0%
! GGTTGCGGTGACGGCGGTGA+AGG + chr3_1:63288757-63288776 None:intergenic 70.0%
! GGTGGTGGTTGCGGTGACGG+CGG + chr3_1:63288763-63288782 None:intergenic 70.0%
! AGAGTAGCGGCGGGTGGTGG+TGG + chr3_1:63288778-63288797 None:intergenic 70.0%
!! GGGAGCGCTTGGAGCGGCAA+TGG + chr3_1:63289904-63289923 None:intergenic 70.0%
!! GCGGCGGGTGGTGGTGGTTG+CGG + chr3_1:63288772-63288791 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 63288637 63292847 63288637 ID=Msa0367600;Name=Msa0367600
chr3_1 mRNA 63288637 63292847 63288637 ID=Msa0367600-mRNA-1;Parent=Msa0367600;Name=Msa0367600-mRNA-1;_AED=0.31;_eAED=0.31;_QI=89|1|1|1|1|1|6|375|396
chr3_1 exon 63288637 63289114 63288637 ID=Msa0367600-mRNA-1:exon:12485;Parent=Msa0367600-mRNA-1
chr3_1 exon 63289487 63289547 63289487 ID=Msa0367600-mRNA-1:exon:12484;Parent=Msa0367600-mRNA-1
chr3_1 exon 63289948 63290119 63289948 ID=Msa0367600-mRNA-1:exon:12483;Parent=Msa0367600-mRNA-1
chr3_1 exon 63290620 63290769 63290620 ID=Msa0367600-mRNA-1:exon:12482;Parent=Msa0367600-mRNA-1
chr3_1 exon 63291032 63291154 63291032 ID=Msa0367600-mRNA-1:exon:12481;Parent=Msa0367600-mRNA-1
chr3_1 exon 63292177 63292847 63292177 ID=Msa0367600-mRNA-1:exon:12480;Parent=Msa0367600-mRNA-1
chr3_1 five_prime_UTR 63292759 63292847 63292759 ID=Msa0367600-mRNA-1:five_prime_utr;Parent=Msa0367600-mRNA-1
chr3_1 CDS 63292177 63292758 63292177 ID=Msa0367600-mRNA-1:cds;Parent=Msa0367600-mRNA-1
chr3_1 CDS 63291032 63291154 63291032 ID=Msa0367600-mRNA-1:cds;Parent=Msa0367600-mRNA-1
chr3_1 CDS 63290620 63290769 63290620 ID=Msa0367600-mRNA-1:cds;Parent=Msa0367600-mRNA-1
chr3_1 CDS 63289948 63290119 63289948 ID=Msa0367600-mRNA-1:cds;Parent=Msa0367600-mRNA-1
chr3_1 CDS 63289487 63289547 63289487 ID=Msa0367600-mRNA-1:cds;Parent=Msa0367600-mRNA-1
chr3_1 CDS 63289012 63289114 63289012 ID=Msa0367600-mRNA-1:cds;Parent=Msa0367600-mRNA-1
chr3_1 three_prime_UTR 63288637 63289011 63288637 ID=Msa0367600-mRNA-1:three_prime_utr;Parent=Msa0367600-mRNA-1
Gene Sequence

>Msa0367600

ATGCTGTCGCCGTGGTGCTACTCCACTCCCTTCACCGCCGTCACCGCAACCACCACCACCCGCCGCTACTCTTTCACCTCTCACACTCCTCAATTCCCAACTTCTTCCACCACTCCATCTTCTCTCCGTTTCCGCATTCCATGCTCCAACAAAACCACCGGCAAATCAACAGAATCCACCGACCTCGAGTTGGTAGATTGCGTAGGAACAGGACAAGATGTGGAGTGTCTCCTAACCGAAGAAGACGAAGGAAAAACAAAAGATGAATCATCATCGAAGAGACTGTGCCTTGGGGAAGCGTTATGGGAAGGTGCAGTGTTAATATCACCGTTCTTCTTTTGGGGAACTGCAATGGTGGCGATGAAAGAAGTGATTCCTAATTACGGTCCTTTTTTCGTTGCGTCTTTTCGTTTAATTCCAGCTGGGTTTCTTCTTGTTGCTTTTGCTGCTTTTAGAGGAAGAGCTTTACCTTCTGGTTTCAATGCTTGGATTTCTATCGCAATATTCGCACTCGTCGATGCTGCTTGCTTTCAGGGGTTTCTTGCTGAAGGGTTGCAGAAGACTTCAGCTGGTTTGGGCAGTGTTATTATTGATTCACAACCTTTGACGGTGGCTGTACTTGCTGCTTTGTTATTTGGTGAGTCCATTGGAGTTGTTGGAGCTGCCGGGCTTGTACTTGGCGTCGTAGGACTTGTGTTACTTGAGTTACCTGCCCTATCATTTGATGGGAGCAACTTCTCACTGTGGGGAAGTGGGGAGTGGTGGATGCTTCTTGCAGCTCAGAGCATGGCAGTTGGCACTGTCATGGTTCGGTGGGTCTCCAAGTACTCTGATCCTATCATGGCAACTGGATGGCATATGGTTATTGGTGGTCTCCCCCTTGTGGCATTCGCGATTCTTAACAATGAGCCTGCTGTAAGTGGGAGTCTTAAAGAGTACAGTTCAACGGATGTATTGGCACTCCTCTACACGTCCATTTTTGGAAGTGCTGTTAGCTATGGTGTGTTCTTTTACAGTGCAACTAAAGGTAGCTTGACAAAGCTCAGTTCACTTACATTTCTAACCCCAATGTTTGCCTCAATTTTCGGGTTTTTGTATCTCGGTGAGACATTCTCACCTGTACAGCTTGTTGGGGCCAGTGTTACTGTAGCTGCAATATACATGGTTAACTTCAGAAACACTTCAGAATGA

Protein sequence

>Msa0367600

MLSPWCYSTPFTAVTATTTTRRYSFTSHTPQFPTSSTTPSSLRFRIPCSNKTTGKSTESTDLELVDCVGTGQDVECLLTEEDEGKTKDESSSKRLCLGEALWEGAVLISPFFFWGTAMVAMKEVIPNYGPFFVASFRLIPAGFLLVAFAAFRGRALPSGFNAWISIAIFALVDAACFQGFLAEGLQKTSAGLGSVIIDSQPLTVAVLAALLFGESIGVVGAAGLVLGVVGLVLLELPALSFDGSNFSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPIMATGWHMVIGGLPLVAFAILNNEPAVSGSLKEYSSTDVLALLYTSIFGSAVSYGVFFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPVQLVGASVTVAAIYMVNFRNTSE*