AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0463540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463540 MtrunA17_Chr3g0113711 95.238 231 11 0 1 231 1 231 1.85e-162 448
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463540 AT3G56010.1 58.519 135 44 4 99 231 77 201 3.54e-48 157

Find 71 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATGGACATGAAATTTA+AGG 0.175869 3_3:-62930801 None:intergenic
GAATAGCTGATTTATATATT+TGG 0.179692 3_3:+62930767 Msa0463540:three_prime_UTR
CATCTCATTAGTCATTAAAA+TGG 0.237690 3_3:-62930710 None:intergenic
AACAAATTACCAGGGGCTTC+TGG 0.243956 3_3:-62930540 None:intergenic
TTCAACAGATGCTAGTAATA+AGG 0.322512 3_3:+62930233 Msa0463540:CDS
TGAGATGATCGTGTGGTTAC+AGG 0.325931 3_3:-62930375 None:intergenic
TTTGTCAAGGAGAAAAGATT+TGG 0.326672 3_3:+62930177 Msa0463540:CDS
TGGTAGTTGGTACACAAAAT+AGG 0.353646 3_3:-62931040 None:intergenic
TTTATCAGCACAGTGATGTT+TGG 0.378545 3_3:+62930654 Msa0463540:CDS
CTGAAAATGCTGCTATGTTA+TGG 0.380326 3_3:-62929049 None:intergenic
GTGTGCTCTGAGTGGCCTTC+GGG 0.390366 3_3:-62930125 None:intergenic
AGAAAGTGAGAGAGAGGATA+AGG 0.396564 3_3:+62930397 Msa0463540:CDS
TAGTCAAAACTTACAATTGT+TGG 0.397714 3_3:+62930999 Msa0463540:three_prime_UTR
TCAAAAGTCCAACCTTCCTT+TGG 0.411926 3_3:-62930585 None:intergenic
AGTGTGCTCTGAGTGGCCTT+CGG 0.416107 3_3:-62930126 None:intergenic
AGTCAAAACTTACAATTGTT+GGG 0.416660 3_3:+62931000 Msa0463540:three_prime_UTR
GTCTGTGATTCTGCCTGAGC+AGG 0.422298 3_3:-62930309 None:intergenic
GTGGTTACAGGTTGCGACTT+AGG 0.426739 3_3:-62930363 None:intergenic
GGTAGATGTTAACTGATCAT+TGG 0.433318 3_3:-62930283 None:intergenic
ACTAATGAGATGAGATTTCA+AGG 0.437444 3_3:+62930721 Msa0463540:exon
CAAACTATCACGATGCATCT+AGG 0.448156 3_3:+62930082 Msa0463540:CDS
TCGACATTAACATCAATTCA+TGG 0.448507 3_3:-62930816 None:intergenic
CTGTCATCAAACAAATTACC+AGG 0.451100 3_3:-62930549 None:intergenic
GATGCTAGTAATAAGGATAC+TGG 0.451608 3_3:+62930240 Msa0463540:CDS
GGCCTTCGGGAAAGAAGCTC+CGG 0.457076 3_3:-62930112 None:intergenic
GAAAGTGAGAGAGAGGATAA+GGG 0.460702 3_3:+62930398 Msa0463540:CDS
TGATTCTGCCTGAGCAGGAT+TGG 0.469008 3_3:-62930304 None:intergenic
AAAACAGCTAAATCAGAAAT+GGG 0.480346 3_3:+62930453 Msa0463540:CDS
GCAGATCCATTGGAAACCTC+TGG 0.503333 3_3:-62930333 None:intergenic
TGGAGAGATATTTGATTCAG+AGG 0.505324 3_3:+62930910 Msa0463540:three_prime_UTR
TTTGGTATTATTTCATTAGG+TGG 0.509257 3_3:+62930890 Msa0463540:three_prime_UTR
CGTTGAGGTGAAGCTGATGA+TGG 0.510936 3_3:-62929166 None:intergenic
AACATCTACCAATCCTGCTC+AGG 0.512154 3_3:+62930296 Msa0463540:CDS
AGGAGATGCTGCAGATCCAT+TGG 0.516503 3_3:-62930343 None:intergenic
CTAGTAATAAGGATACTGGC+AGG 0.528322 3_3:+62930244 Msa0463540:CDS
TGCCGGAGCTTCTTTCCCGA+AGG 0.532920 3_3:+62930110 Msa0463540:CDS
TGTGTTTCAAAGACCAGCCA+TGG 0.534784 3_3:-62929104 None:intergenic
CATTGTATATCATATTCACT+AGG 0.536095 3_3:-62930939 None:intergenic
ACTTACATTGTGTGGAAAGT+TGG 0.543190 3_3:+62930681 Msa0463540:CDS
ATTGTTATGCTATCCATGGC+TGG 0.546323 3_3:+62929091 Msa0463540:five_prime_UTR
TTGGAACAACTTACATTGTG+TGG 0.560213 3_3:+62930673 Msa0463540:CDS
AAACGAGGAGTCCTAGAGCT+TGG 0.564690 3_3:-62931060 None:intergenic
GAGGGATGCCAAAGGAAGGT+TGG 0.568563 3_3:+62930577 Msa0463540:CDS
GAAGATTGTTATGCTATCCA+TGG 0.571476 3_3:+62929087 Msa0463540:five_prime_UTR
CATCTCAGAAAGTGAGAGAG+AGG 0.580497 3_3:+62930391 Msa0463540:CDS
TGTACCAACTACCAAGCTCT+AGG 0.587624 3_3:+62931049 Msa0463540:three_prime_UTR
GTTGGTACACAAAATAGGAC+AGG 0.591014 3_3:-62931035 None:intergenic
ACACTCGTTTCGATAACGTC+GGG 0.594355 3_3:+62930144 Msa0463540:CDS
TTGTTTGATGACAGCAAACG+AGG 0.599920 3_3:+62930558 Msa0463540:CDS
TCTGGACTTCCAGAAGCCCC+TGG 0.604678 3_3:+62930531 Msa0463540:CDS
GATGCATCTAGGTATTCTGC+CGG 0.605736 3_3:+62930093 Msa0463540:CDS
CACTTTCTGAGATGATCGTG+TGG 0.606839 3_3:-62930382 None:intergenic
GAGTCCTAGAGCTTGGTAGT+TGG 0.617030 3_3:-62931053 None:intergenic
AAACGAGGGATGCCAAAGGA+AGG 0.625366 3_3:+62930573 Msa0463540:CDS
TCGAGTTCTTAACCAGTCCA+AGG 0.632326 3_3:+62930425 Msa0463540:CDS
CATCATCAGCTTCACCTCAA+CGG 0.635332 3_3:+62929167 Msa0463540:CDS
TAGTAATAAGGATACTGGCA+GGG 0.635455 3_3:+62930245 Msa0463540:CDS
GGGAACAAGAATGTTTGTCA+AGG 0.643523 3_3:+62930164 Msa0463540:CDS
CAGCAAACGAGGGATGCCAA+AGG 0.649716 3_3:+62930569 Msa0463540:CDS
CAGACACCAGAGGTTTCCAA+TGG 0.649775 3_3:+62930327 Msa0463540:CDS
GTTGAGGTGAAGCTGATGAT+GGG 0.654569 3_3:-62929165 None:intergenic
AGAAAGAGATCAGAACCACC+AGG 0.655199 3_3:-62930612 None:intergenic
TGTTTGATGACAGCAAACGA+GGG 0.666281 3_3:+62930559 Msa0463540:CDS
AGAAATGGGAAGTAGTGTGT+TGG 0.668878 3_3:+62930467 Msa0463540:CDS
CACACTCGTTTCGATAACGT+CGG 0.679278 3_3:+62930143 Msa0463540:CDS
GGCAGAATCACAGACACCAG+AGG 0.679651 3_3:+62930317 Msa0463540:CDS
TGTCATCAAACAAATTACCA+GGG 0.683437 3_3:-62930548 None:intergenic
AGTGAGAGAGAGGATAAGGG+CGG 0.687543 3_3:+62930401 Msa0463540:CDS
GTCATCAAACAAATTACCAG+GGG 0.699685 3_3:-62930547 None:intergenic
CGAAACGAGTGTGCTCTGAG+TGG 0.707929 3_3:-62930133 None:intergenic
GGGATTATTGTATCAAAACG+AGG 0.720600 3_3:-62931075 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATCAAATCAAATAAAAA+TGG + chr3_3:62929128-62929147 Msa0463540:exon 10.0%
!!! TTTTTTACTCTTATTATTTT+TGG + chr3_3:62930872-62930891 Msa0463540:three_prime_UTR 10.0%
!! TAAATCAAATCAAATAAAAA+TGG + chr3_3:62929128-62929147 Msa0463540:exon 10.0%
!!! TTTTTTACTCTTATTATTTT+TGG + chr3_3:62930872-62930891 Msa0463540:three_prime_UTR 10.0%
!! ATTATCTTCTAATATGTAAT+AGG + chr3_3:62929937-62929956 Msa0463540:intron 15.0%
!! ACATAATTGAATTATATTGA+AGG - chr3_3:62929997-62930016 None:intergenic 15.0%
!!! ATTTTTGGTATTATTTCATT+AGG + chr3_3:62930887-62930906 Msa0463540:three_prime_UTR 15.0%
!! ATTATCTTCTAATATGTAAT+AGG + chr3_3:62929937-62929956 Msa0463540:intron 15.0%
!! ACATAATTGAATTATATTGA+AGG - chr3_3:62929997-62930016 None:intergenic 15.0%
!!! ATTTTTGGTATTATTTCATT+AGG + chr3_3:62930887-62930906 Msa0463540:three_prime_UTR 15.0%
!!! CACTTTAGTTTATAGATTTA+AGG + chr3_3:62929231-62929250 Msa0463540:intron 20.0%
!!! AGTTTATAGATTTAAGGTTA+TGG + chr3_3:62929237-62929256 Msa0463540:intron 20.0%
!! ATACTAAACATTATTTGACT+TGG + chr3_3:62929322-62929341 Msa0463540:intron 20.0%
!!! TACTAAACATTATTTGACTT+GGG + chr3_3:62929323-62929342 Msa0463540:intron 20.0%
!! AGGAAATATGACTATTTAAA+GGG - chr3_3:62929656-62929675 None:intergenic 20.0%
!! AAGGAAATATGACTATTTAA+AGG - chr3_3:62929657-62929676 None:intergenic 20.0%
!!! GAATAGCTGATTTATATATT+TGG + chr3_3:62930767-62930786 Msa0463540:three_prime_UTR 20.0%
!!! CACTTTAGTTTATAGATTTA+AGG + chr3_3:62929231-62929250 Msa0463540:intron 20.0%
!!! AGTTTATAGATTTAAGGTTA+TGG + chr3_3:62929237-62929256 Msa0463540:intron 20.0%
!! ATACTAAACATTATTTGACT+TGG + chr3_3:62929322-62929341 Msa0463540:intron 20.0%
!!! TACTAAACATTATTTGACTT+GGG + chr3_3:62929323-62929342 Msa0463540:intron 20.0%
!! AGGAAATATGACTATTTAAA+GGG - chr3_3:62929656-62929675 None:intergenic 20.0%
!! AAGGAAATATGACTATTTAA+AGG - chr3_3:62929657-62929676 None:intergenic 20.0%
!!! GAATAGCTGATTTATATATT+TGG + chr3_3:62930767-62930786 Msa0463540:three_prime_UTR 20.0%
!! ATTTGCTTGTAATTGATTCT+TGG + chr3_3:62929293-62929312 Msa0463540:intron 25.0%
! TAACAACGTGTTATGTTAAT+CGG + chr3_3:62929394-62929413 Msa0463540:intron 25.0%
! TTAACATAAAGCAATTTCAC+TGG - chr3_3:62929461-62929480 None:intergenic 25.0%
! TATAAAATGCGCTATATCTA+TGG + chr3_3:62929481-62929500 Msa0463540:intron 25.0%
! TATTTAAAGGGCTAATTCTA+CGG - chr3_3:62929644-62929663 None:intergenic 25.0%
! TAAATAGTCATATTTCCTTG+TGG + chr3_3:62929658-62929677 Msa0463540:intron 25.0%
!!! TTGTTTGATGATGAAAATGT+TGG + chr3_3:62929845-62929864 Msa0463540:intron 25.0%
!! TCCCTTTTATATGTCAATTT+TGG + chr3_3:62929892-62929911 Msa0463540:intron 25.0%
! CCCAAAATTGACATATAAAA+GGG - chr3_3:62929896-62929915 None:intergenic 25.0%
!! CCCTTTTATATGTCAATTTT+GGG + chr3_3:62929893-62929912 Msa0463540:intron 25.0%
! TCCCAAAATTGACATATAAA+AGG - chr3_3:62929897-62929916 None:intergenic 25.0%
!!! ATTTCTGATTTAGCTGTTTT+TGG - chr3_3:62930453-62930472 None:intergenic 25.0%
! AAAAACAGCTAAATCAGAAA+TGG + chr3_3:62930452-62930471 Msa0463540:CDS 25.0%
! AAAACAGCTAAATCAGAAAT+GGG + chr3_3:62930453-62930472 Msa0463540:CDS 25.0%
! CATCTCATTAGTCATTAAAA+TGG - chr3_3:62930713-62930732 None:intergenic 25.0%
! ATTCATGGACATGAAATTTA+AGG - chr3_3:62930804-62930823 None:intergenic 25.0%
! TTTGGTATTATTTCATTAGG+TGG + chr3_3:62930890-62930909 Msa0463540:three_prime_UTR 25.0%
! CATTGTATATCATATTCACT+AGG - chr3_3:62930942-62930961 None:intergenic 25.0%
! TAGTCAAAACTTACAATTGT+TGG + chr3_3:62930999-62931018 Msa0463540:three_prime_UTR 25.0%
! AGTCAAAACTTACAATTGTT+GGG + chr3_3:62931000-62931019 Msa0463540:three_prime_UTR 25.0%
!! ATTTGCTTGTAATTGATTCT+TGG + chr3_3:62929293-62929312 Msa0463540:intron 25.0%
! TAACAACGTGTTATGTTAAT+CGG + chr3_3:62929394-62929413 Msa0463540:intron 25.0%
! TTAACATAAAGCAATTTCAC+TGG - chr3_3:62929461-62929480 None:intergenic 25.0%
! TATAAAATGCGCTATATCTA+TGG + chr3_3:62929481-62929500 Msa0463540:intron 25.0%
! TATTTAAAGGGCTAATTCTA+CGG - chr3_3:62929644-62929663 None:intergenic 25.0%
! TAAATAGTCATATTTCCTTG+TGG + chr3_3:62929658-62929677 Msa0463540:intron 25.0%
!!! TTGTTTGATGATGAAAATGT+TGG + chr3_3:62929845-62929864 Msa0463540:intron 25.0%
!! TCCCTTTTATATGTCAATTT+TGG + chr3_3:62929892-62929911 Msa0463540:intron 25.0%
! CCCAAAATTGACATATAAAA+GGG - chr3_3:62929896-62929915 None:intergenic 25.0%
!! CCCTTTTATATGTCAATTTT+GGG + chr3_3:62929893-62929912 Msa0463540:intron 25.0%
! TCCCAAAATTGACATATAAA+AGG - chr3_3:62929897-62929916 None:intergenic 25.0%
!!! ATTTCTGATTTAGCTGTTTT+TGG - chr3_3:62930453-62930472 None:intergenic 25.0%
! AAAAACAGCTAAATCAGAAA+TGG + chr3_3:62930452-62930471 Msa0463540:CDS 25.0%
! AAAACAGCTAAATCAGAAAT+GGG + chr3_3:62930453-62930472 Msa0463540:CDS 25.0%
! CATCTCATTAGTCATTAAAA+TGG - chr3_3:62930713-62930732 None:intergenic 25.0%
! ATTCATGGACATGAAATTTA+AGG - chr3_3:62930804-62930823 None:intergenic 25.0%
! TTTGGTATTATTTCATTAGG+TGG + chr3_3:62930890-62930909 Msa0463540:three_prime_UTR 25.0%
! CATTGTATATCATATTCACT+AGG - chr3_3:62930942-62930961 None:intergenic 25.0%
! TAGTCAAAACTTACAATTGT+TGG + chr3_3:62930999-62931018 Msa0463540:three_prime_UTR 25.0%
! AGTCAAAACTTACAATTGTT+GGG + chr3_3:62931000-62931019 Msa0463540:three_prime_UTR 25.0%
! TAAGAAGAGTGTGTTAGTTA+TGG + chr3_3:62929260-62929279 Msa0463540:intron 30.0%
ATCTCAATTGATCCAATTGA+AGG - chr3_3:62929569-62929588 None:intergenic 30.0%
CAATTGGATCAATTGAGATA+TGG + chr3_3:62929570-62929589 Msa0463540:intron 30.0%
!! GGTGAGATTTATTGATTCAA+TGG + chr3_3:62929591-62929610 Msa0463540:intron 30.0%
TTTCATTATCCCTTAGAAGT+TGG + chr3_3:62930056-62930075 Msa0463540:intron 30.0%
! AGTTTGTTTCCAACTTCTAA+GGG - chr3_3:62930068-62930087 None:intergenic 30.0%
!! TAGTTTGTTTCCAACTTCTA+AGG - chr3_3:62930069-62930088 None:intergenic 30.0%
TTTGTCAAGGAGAAAAGATT+TGG + chr3_3:62930177-62930196 Msa0463540:CDS 30.0%
CACTATTTGCAACTGAAAAA+CGG - chr3_3:62930206-62930225 None:intergenic 30.0%
TTCAACAGATGCTAGTAATA+AGG + chr3_3:62930233-62930252 Msa0463540:CDS 30.0%
!! CTTTTAAAGAAAGTGACAGA+GGG + chr3_3:62930493-62930512 Msa0463540:CDS 30.0%
TGTCATCAAACAAATTACCA+GGG - chr3_3:62930551-62930570 None:intergenic 30.0%
ACTAATGAGATGAGATTTCA+AGG + chr3_3:62930721-62930740 Msa0463540:exon 30.0%
TCGACATTAACATCAATTCA+TGG - chr3_3:62930819-62930838 None:intergenic 30.0%
!!! TGTCGAGTTTTTTGCTTTTT+AGG + chr3_3:62930833-62930852 Msa0463540:three_prime_UTR 30.0%
!!! GTTTTGACTAAACAACTACA+AGG - chr3_3:62930989-62931008 None:intergenic 30.0%
!! TCCTCGTTTTGATACAATAA+TGG + chr3_3:62931074-62931093 Msa0463540:three_prime_UTR 30.0%
! TAAGAAGAGTGTGTTAGTTA+TGG + chr3_3:62929260-62929279 Msa0463540:intron 30.0%
ATCTCAATTGATCCAATTGA+AGG - chr3_3:62929569-62929588 None:intergenic 30.0%
CAATTGGATCAATTGAGATA+TGG + chr3_3:62929570-62929589 Msa0463540:intron 30.0%
!! GGTGAGATTTATTGATTCAA+TGG + chr3_3:62929591-62929610 Msa0463540:intron 30.0%
TTTCATTATCCCTTAGAAGT+TGG + chr3_3:62930056-62930075 Msa0463540:intron 30.0%
! AGTTTGTTTCCAACTTCTAA+GGG - chr3_3:62930068-62930087 None:intergenic 30.0%
!! TAGTTTGTTTCCAACTTCTA+AGG - chr3_3:62930069-62930088 None:intergenic 30.0%
TTTGTCAAGGAGAAAAGATT+TGG + chr3_3:62930177-62930196 Msa0463540:CDS 30.0%
CACTATTTGCAACTGAAAAA+CGG - chr3_3:62930206-62930225 None:intergenic 30.0%
TTCAACAGATGCTAGTAATA+AGG + chr3_3:62930233-62930252 Msa0463540:CDS 30.0%
!! CTTTTAAAGAAAGTGACAGA+GGG + chr3_3:62930493-62930512 Msa0463540:CDS 30.0%
TGTCATCAAACAAATTACCA+GGG - chr3_3:62930551-62930570 None:intergenic 30.0%
ACTAATGAGATGAGATTTCA+AGG + chr3_3:62930721-62930740 Msa0463540:exon 30.0%
TCGACATTAACATCAATTCA+TGG - chr3_3:62930819-62930838 None:intergenic 30.0%
!!! TGTCGAGTTTTTTGCTTTTT+AGG + chr3_3:62930833-62930852 Msa0463540:three_prime_UTR 30.0%
!!! GTTTTGACTAAACAACTACA+AGG - chr3_3:62930989-62931008 None:intergenic 30.0%
CTGAAAATGCTGCTATGTTA+TGG - chr3_3:62929052-62929071 None:intergenic 35.0%
GAAGATTGTTATGCTATCCA+TGG + chr3_3:62929087-62929106 Msa0463540:five_prime_UTR 35.0%
TTAATCGGAAACAGTATTCC+TGG + chr3_3:62929409-62929428 Msa0463540:intron 35.0%
TAATCGGAAACAGTATTCCT+GGG + chr3_3:62929410-62929429 Msa0463540:intron 35.0%
TGAAGGACTTACTGATCAAA+TGG - chr3_3:62929552-62929571 None:intergenic 35.0%
TGATCAGTAAGTCCTTCAAT+TGG + chr3_3:62929554-62929573 Msa0463540:intron 35.0%
GAACTTAACAAAGATCCACA+AGG - chr3_3:62929676-62929695 None:intergenic 35.0%
CTTTGCAGTTATGTTGTGAT+CGG + chr3_3:62929794-62929813 Msa0463540:intron 35.0%
GATGCTAGTAATAAGGATAC+TGG + chr3_3:62930240-62930259 Msa0463540:CDS 35.0%
TAGTAATAAGGATACTGGCA+GGG + chr3_3:62930245-62930264 Msa0463540:CDS 35.0%
GGTAGATGTTAACTGATCAT+TGG - chr3_3:62930286-62930305 None:intergenic 35.0%
!!! TTTAGCTGTTTTTGGTTCCT+TGG - chr3_3:62930445-62930464 None:intergenic 35.0%
!! GCTTTTAAAGAAAGTGACAG+AGG + chr3_3:62930492-62930511 Msa0463540:CDS 35.0%
GTCATCAAACAAATTACCAG+GGG - chr3_3:62930550-62930569 None:intergenic 35.0%
CTGTCATCAAACAAATTACC+AGG - chr3_3:62930552-62930571 None:intergenic 35.0%
TTTATCAGCACAGTGATGTT+TGG + chr3_3:62930654-62930673 Msa0463540:CDS 35.0%
TTGGAACAACTTACATTGTG+TGG + chr3_3:62930673-62930692 Msa0463540:CDS 35.0%
ACTTACATTGTGTGGAAAGT+TGG + chr3_3:62930681-62930700 Msa0463540:CDS 35.0%
TGGAGAGATATTTGATTCAG+AGG + chr3_3:62930910-62930929 Msa0463540:three_prime_UTR 35.0%
! TGGTAGTTGGTACACAAAAT+AGG - chr3_3:62931043-62931062 None:intergenic 35.0%
CTGAAAATGCTGCTATGTTA+TGG - chr3_3:62929052-62929071 None:intergenic 35.0%
GAAGATTGTTATGCTATCCA+TGG + chr3_3:62929087-62929106 Msa0463540:five_prime_UTR 35.0%
TTAATCGGAAACAGTATTCC+TGG + chr3_3:62929409-62929428 Msa0463540:intron 35.0%
TAATCGGAAACAGTATTCCT+GGG + chr3_3:62929410-62929429 Msa0463540:intron 35.0%
TGAAGGACTTACTGATCAAA+TGG - chr3_3:62929552-62929571 None:intergenic 35.0%
TGATCAGTAAGTCCTTCAAT+TGG + chr3_3:62929554-62929573 Msa0463540:intron 35.0%
GAACTTAACAAAGATCCACA+AGG - chr3_3:62929676-62929695 None:intergenic 35.0%
CTTTGCAGTTATGTTGTGAT+CGG + chr3_3:62929794-62929813 Msa0463540:intron 35.0%
GATGCTAGTAATAAGGATAC+TGG + chr3_3:62930240-62930259 Msa0463540:CDS 35.0%
TAGTAATAAGGATACTGGCA+GGG + chr3_3:62930245-62930264 Msa0463540:CDS 35.0%
GGTAGATGTTAACTGATCAT+TGG - chr3_3:62930286-62930305 None:intergenic 35.0%
!!! TTTAGCTGTTTTTGGTTCCT+TGG - chr3_3:62930445-62930464 None:intergenic 35.0%
!! GCTTTTAAAGAAAGTGACAG+AGG + chr3_3:62930492-62930511 Msa0463540:CDS 35.0%
GTCATCAAACAAATTACCAG+GGG - chr3_3:62930550-62930569 None:intergenic 35.0%
CTGTCATCAAACAAATTACC+AGG - chr3_3:62930552-62930571 None:intergenic 35.0%
TTTATCAGCACAGTGATGTT+TGG + chr3_3:62930654-62930673 Msa0463540:CDS 35.0%
TTGGAACAACTTACATTGTG+TGG + chr3_3:62930673-62930692 Msa0463540:CDS 35.0%
ACTTACATTGTGTGGAAAGT+TGG + chr3_3:62930681-62930700 Msa0463540:CDS 35.0%
TGGAGAGATATTTGATTCAG+AGG + chr3_3:62930910-62930929 Msa0463540:three_prime_UTR 35.0%
! TGGTAGTTGGTACACAAAAT+AGG - chr3_3:62931043-62931062 None:intergenic 35.0%
ATTGTTATGCTATCCATGGC+TGG + chr3_3:62929091-62929110 Msa0463540:five_prime_UTR 40.0%
GATAGAAAAACGTACCGTTG+AGG - chr3_3:62929184-62929203 None:intergenic 40.0%
CTATCATAAGAAGTTCACCC+AGG - chr3_3:62929430-62929449 None:intergenic 40.0%
CTATGGTGCACATGTTAAGT+AGG + chr3_3:62929498-62929517 Msa0463540:intron 40.0%
! GTTAAGTAGGTGCTGTACTA+TGG + chr3_3:62929511-62929530 Msa0463540:intron 40.0%
GTGCATTAAACCAAAGTTCC+AGG + chr3_3:62929709-62929728 Msa0463540:intron 40.0%
CATTAAACCAAAGTTCCAGG+TGG + chr3_3:62929712-62929731 Msa0463540:intron 40.0%
CAAACTATCACGATGCATCT+AGG + chr3_3:62930082-62930101 Msa0463540:CDS 40.0%
GGGAACAAGAATGTTTGTCA+AGG + chr3_3:62930164-62930183 Msa0463540:CDS 40.0%
CTAGTAATAAGGATACTGGC+AGG + chr3_3:62930244-62930263 Msa0463540:CDS 40.0%
AGAAAGTGAGAGAGAGGATA+AGG + chr3_3:62930397-62930416 Msa0463540:CDS 40.0%
GAAAGTGAGAGAGAGGATAA+GGG + chr3_3:62930398-62930417 Msa0463540:CDS 40.0%
AGAAATGGGAAGTAGTGTGT+TGG + chr3_3:62930467-62930486 Msa0463540:CDS 40.0%
AAAGTGACAGAGGGAAAAAG+AGG + chr3_3:62930502-62930521 Msa0463540:CDS 40.0%
! TTGTTTGATGACAGCAAACG+AGG + chr3_3:62930558-62930577 Msa0463540:CDS 40.0%
! TGTTTGATGACAGCAAACGA+GGG + chr3_3:62930559-62930578 Msa0463540:CDS 40.0%
TCAAAAGTCCAACCTTCCTT+TGG - chr3_3:62930588-62930607 None:intergenic 40.0%
!!! GGTTGGACTTTTGATTTTCC+TGG + chr3_3:62930594-62930613 Msa0463540:CDS 40.0%
!!! TGGACTTTTGATTTTCCTGG+TGG + chr3_3:62930597-62930616 Msa0463540:CDS 40.0%
GTTGGTACACAAAATAGGAC+AGG - chr3_3:62931038-62931057 None:intergenic 40.0%
ATTGTTATGCTATCCATGGC+TGG + chr3_3:62929091-62929110 Msa0463540:five_prime_UTR 40.0%
GATAGAAAAACGTACCGTTG+AGG - chr3_3:62929184-62929203 None:intergenic 40.0%
CTATCATAAGAAGTTCACCC+AGG - chr3_3:62929430-62929449 None:intergenic 40.0%
CTATGGTGCACATGTTAAGT+AGG + chr3_3:62929498-62929517 Msa0463540:intron 40.0%
! GTTAAGTAGGTGCTGTACTA+TGG + chr3_3:62929511-62929530 Msa0463540:intron 40.0%
GTGCATTAAACCAAAGTTCC+AGG + chr3_3:62929709-62929728 Msa0463540:intron 40.0%
CATTAAACCAAAGTTCCAGG+TGG + chr3_3:62929712-62929731 Msa0463540:intron 40.0%
CAAACTATCACGATGCATCT+AGG + chr3_3:62930082-62930101 Msa0463540:CDS 40.0%
GGGAACAAGAATGTTTGTCA+AGG + chr3_3:62930164-62930183 Msa0463540:CDS 40.0%
CTAGTAATAAGGATACTGGC+AGG + chr3_3:62930244-62930263 Msa0463540:CDS 40.0%
AGAAAGTGAGAGAGAGGATA+AGG + chr3_3:62930397-62930416 Msa0463540:CDS 40.0%
GAAAGTGAGAGAGAGGATAA+GGG + chr3_3:62930398-62930417 Msa0463540:CDS 40.0%
AGAAATGGGAAGTAGTGTGT+TGG + chr3_3:62930467-62930486 Msa0463540:CDS 40.0%
AAAGTGACAGAGGGAAAAAG+AGG + chr3_3:62930502-62930521 Msa0463540:CDS 40.0%
! TTGTTTGATGACAGCAAACG+AGG + chr3_3:62930558-62930577 Msa0463540:CDS 40.0%
! TGTTTGATGACAGCAAACGA+GGG + chr3_3:62930559-62930578 Msa0463540:CDS 40.0%
TCAAAAGTCCAACCTTCCTT+TGG - chr3_3:62930588-62930607 None:intergenic 40.0%
!!! GGTTGGACTTTTGATTTTCC+TGG + chr3_3:62930594-62930613 Msa0463540:CDS 40.0%
!!! TGGACTTTTGATTTTCCTGG+TGG + chr3_3:62930597-62930616 Msa0463540:CDS 40.0%
GTTGGTACACAAAATAGGAC+AGG - chr3_3:62931038-62931057 None:intergenic 40.0%
! AGCAGCATTTTCAGTCTCAG+CGG + chr3_3:62929058-62929077 Msa0463540:five_prime_UTR 45.0%
! TTTTCAGTCTCAGCGGTAAG+AGG + chr3_3:62929065-62929084 Msa0463540:five_prime_UTR 45.0%
TGTGTTTCAAAGACCAGCCA+TGG - chr3_3:62929107-62929126 None:intergenic 45.0%
GTTGAGGTGAAGCTGATGAT+GGG - chr3_3:62929168-62929187 None:intergenic 45.0%
CATCATCAGCTTCACCTCAA+CGG + chr3_3:62929167-62929186 Msa0463540:CDS 45.0%
AGAAAGTCCACCTGGAACTT+TGG - chr3_3:62929722-62929741 None:intergenic 45.0%
! CATTCTAGAGAAAGTCCACC+TGG - chr3_3:62929730-62929749 None:intergenic 45.0%
GATGCATCTAGGTATTCTGC+CGG + chr3_3:62930093-62930112 Msa0463540:CDS 45.0%
CACACTCGTTTCGATAACGT+CGG + chr3_3:62930143-62930162 Msa0463540:CDS 45.0%
ACACTCGTTTCGATAACGTC+GGG + chr3_3:62930144-62930163 Msa0463540:CDS 45.0%
AACATCTACCAATCCTGCTC+AGG + chr3_3:62930296-62930315 Msa0463540:CDS 45.0%
TGAGATGATCGTGTGGTTAC+AGG - chr3_3:62930378-62930397 None:intergenic 45.0%
!! CACTTTCTGAGATGATCGTG+TGG - chr3_3:62930385-62930404 None:intergenic 45.0%
CATCTCAGAAAGTGAGAGAG+AGG + chr3_3:62930391-62930410 Msa0463540:CDS 45.0%
TCGAGTTCTTAACCAGTCCA+AGG + chr3_3:62930425-62930444 Msa0463540:CDS 45.0%
!!! CTGTTTTTGGTTCCTTGGAC+TGG - chr3_3:62930440-62930459 None:intergenic 45.0%
GGGAAAAAGAGGAGAAGATC+TGG + chr3_3:62930513-62930532 Msa0463540:CDS 45.0%
AACAAATTACCAGGGGCTTC+TGG - chr3_3:62930543-62930562 None:intergenic 45.0%
AGAAAGAGATCAGAACCACC+AGG - chr3_3:62930615-62930634 None:intergenic 45.0%
TGTACCAACTACCAAGCTCT+AGG + chr3_3:62931049-62931068 Msa0463540:three_prime_UTR 45.0%
! AGCAGCATTTTCAGTCTCAG+CGG + chr3_3:62929058-62929077 Msa0463540:five_prime_UTR 45.0%
! TTTTCAGTCTCAGCGGTAAG+AGG + chr3_3:62929065-62929084 Msa0463540:five_prime_UTR 45.0%
TGTGTTTCAAAGACCAGCCA+TGG - chr3_3:62929107-62929126 None:intergenic 45.0%
GTTGAGGTGAAGCTGATGAT+GGG - chr3_3:62929168-62929187 None:intergenic 45.0%
CATCATCAGCTTCACCTCAA+CGG + chr3_3:62929167-62929186 Msa0463540:CDS 45.0%
AGAAAGTCCACCTGGAACTT+TGG - chr3_3:62929722-62929741 None:intergenic 45.0%
! CATTCTAGAGAAAGTCCACC+TGG - chr3_3:62929730-62929749 None:intergenic 45.0%
GATGCATCTAGGTATTCTGC+CGG + chr3_3:62930093-62930112 Msa0463540:CDS 45.0%
CACACTCGTTTCGATAACGT+CGG + chr3_3:62930143-62930162 Msa0463540:CDS 45.0%
ACACTCGTTTCGATAACGTC+GGG + chr3_3:62930144-62930163 Msa0463540:CDS 45.0%
AACATCTACCAATCCTGCTC+AGG + chr3_3:62930296-62930315 Msa0463540:CDS 45.0%
TGAGATGATCGTGTGGTTAC+AGG - chr3_3:62930378-62930397 None:intergenic 45.0%
!! CACTTTCTGAGATGATCGTG+TGG - chr3_3:62930385-62930404 None:intergenic 45.0%
CATCTCAGAAAGTGAGAGAG+AGG + chr3_3:62930391-62930410 Msa0463540:CDS 45.0%
TCGAGTTCTTAACCAGTCCA+AGG + chr3_3:62930425-62930444 Msa0463540:CDS 45.0%
!!! CTGTTTTTGGTTCCTTGGAC+TGG - chr3_3:62930440-62930459 None:intergenic 45.0%
GGGAAAAAGAGGAGAAGATC+TGG + chr3_3:62930513-62930532 Msa0463540:CDS 45.0%
AACAAATTACCAGGGGCTTC+TGG - chr3_3:62930543-62930562 None:intergenic 45.0%
AGAAAGAGATCAGAACCACC+AGG - chr3_3:62930615-62930634 None:intergenic 45.0%
TGTACCAACTACCAAGCTCT+AGG + chr3_3:62931049-62931068 Msa0463540:three_prime_UTR 45.0%
CGTTGAGGTGAAGCTGATGA+TGG - chr3_3:62929169-62929188 None:intergenic 50.0%
TGATTCTGCCTGAGCAGGAT+TGG - chr3_3:62930307-62930326 None:intergenic 50.0%
CAGACACCAGAGGTTTCCAA+TGG + chr3_3:62930327-62930346 Msa0463540:CDS 50.0%
GCAGATCCATTGGAAACCTC+TGG - chr3_3:62930336-62930355 None:intergenic 50.0%
AGGAGATGCTGCAGATCCAT+TGG - chr3_3:62930346-62930365 None:intergenic 50.0%
GTGGTTACAGGTTGCGACTT+AGG - chr3_3:62930366-62930385 None:intergenic 50.0%
AGTGAGAGAGAGGATAAGGG+CGG + chr3_3:62930401-62930420 Msa0463540:CDS 50.0%
AAACGAGGGATGCCAAAGGA+AGG + chr3_3:62930573-62930592 Msa0463540:CDS 50.0%
! GAGTCCTAGAGCTTGGTAGT+TGG - chr3_3:62931056-62931075 None:intergenic 50.0%
AAACGAGGAGTCCTAGAGCT+TGG - chr3_3:62931063-62931082 None:intergenic 50.0%
CGTTGAGGTGAAGCTGATGA+TGG - chr3_3:62929169-62929188 None:intergenic 50.0%
TGATTCTGCCTGAGCAGGAT+TGG - chr3_3:62930307-62930326 None:intergenic 50.0%
CAGACACCAGAGGTTTCCAA+TGG + chr3_3:62930327-62930346 Msa0463540:CDS 50.0%
GCAGATCCATTGGAAACCTC+TGG - chr3_3:62930336-62930355 None:intergenic 50.0%
AGGAGATGCTGCAGATCCAT+TGG - chr3_3:62930346-62930365 None:intergenic 50.0%
GTGGTTACAGGTTGCGACTT+AGG - chr3_3:62930366-62930385 None:intergenic 50.0%
AGTGAGAGAGAGGATAAGGG+CGG + chr3_3:62930401-62930420 Msa0463540:CDS 50.0%
AAACGAGGGATGCCAAAGGA+AGG + chr3_3:62930573-62930592 Msa0463540:CDS 50.0%
! GAGTCCTAGAGCTTGGTAGT+TGG - chr3_3:62931056-62931075 None:intergenic 50.0%
AAACGAGGAGTCCTAGAGCT+TGG - chr3_3:62931063-62931082 None:intergenic 50.0%
! AGTGTGCTCTGAGTGGCCTT+CGG - chr3_3:62930129-62930148 None:intergenic 55.0%
! CGAAACGAGTGTGCTCTGAG+TGG - chr3_3:62930136-62930155 None:intergenic 55.0%
GTCTGTGATTCTGCCTGAGC+AGG - chr3_3:62930312-62930331 None:intergenic 55.0%
GGCAGAATCACAGACACCAG+AGG + chr3_3:62930317-62930336 Msa0463540:CDS 55.0%
CAGCAAACGAGGGATGCCAA+AGG + chr3_3:62930569-62930588 Msa0463540:CDS 55.0%
GAGGGATGCCAAAGGAAGGT+TGG + chr3_3:62930577-62930596 Msa0463540:CDS 55.0%
! AGTGTGCTCTGAGTGGCCTT+CGG - chr3_3:62930129-62930148 None:intergenic 55.0%
! CGAAACGAGTGTGCTCTGAG+TGG - chr3_3:62930136-62930155 None:intergenic 55.0%
GTCTGTGATTCTGCCTGAGC+AGG - chr3_3:62930312-62930331 None:intergenic 55.0%
GGCAGAATCACAGACACCAG+AGG + chr3_3:62930317-62930336 Msa0463540:CDS 55.0%
CAGCAAACGAGGGATGCCAA+AGG + chr3_3:62930569-62930588 Msa0463540:CDS 55.0%
GAGGGATGCCAAAGGAAGGT+TGG + chr3_3:62930577-62930596 Msa0463540:CDS 55.0%
TGCCGGAGCTTCTTTCCCGA+AGG + chr3_3:62930110-62930129 Msa0463540:CDS 60.0%
GGCCTTCGGGAAAGAAGCTC+CGG - chr3_3:62930115-62930134 None:intergenic 60.0%
! GTGTGCTCTGAGTGGCCTTC+GGG - chr3_3:62930128-62930147 None:intergenic 60.0%
TCTGGACTTCCAGAAGCCCC+TGG + chr3_3:62930531-62930550 Msa0463540:CDS 60.0%
TGCCGGAGCTTCTTTCCCGA+AGG + chr3_3:62930110-62930129 Msa0463540:CDS 60.0%
GGCCTTCGGGAAAGAAGCTC+CGG - chr3_3:62930115-62930134 None:intergenic 60.0%
! GTGTGCTCTGAGTGGCCTTC+GGG - chr3_3:62930128-62930147 None:intergenic 60.0%
TCTGGACTTCCAGAAGCCCC+TGG + chr3_3:62930531-62930550 Msa0463540:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 62929040 62931094 62929040 ID=Msa0463540;Name=Msa0463540
chr3_3 mRNA 62929040 62931094 62929040 ID=Msa0463540-mRNA-1;Parent=Msa0463540;Name=Msa0463540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=107|1|1|1|1|1|2|369|231
chr3_3 exon 62929040 62929188 62929040 ID=Msa0463540-mRNA-1:exon:13575;Parent=Msa0463540-mRNA-1
chr3_3 exon 62930072 62931094 62930072 ID=Msa0463540-mRNA-1:exon:13576;Parent=Msa0463540-mRNA-1
chr3_3 five_prime_UTR 62929040 62929146 62929040 ID=Msa0463540-mRNA-1:five_prime_utr;Parent=Msa0463540-mRNA-1
chr3_3 CDS 62929147 62929188 62929147 ID=Msa0463540-mRNA-1:cds;Parent=Msa0463540-mRNA-1
chr3_3 CDS 62930072 62930725 62930072 ID=Msa0463540-mRNA-1:cds;Parent=Msa0463540-mRNA-1
chr3_3 three_prime_UTR 62930726 62931094 62930726 ID=Msa0463540-mRNA-1:three_prime_utr;Parent=Msa0463540-mRNA-1
Gene Sequence

>Msa0463540

ATGGCTATATCTCTAAATCCCATCATCAGCTTCACCTCAACGAAGTTGGAAACAAACTATCACGATGCATCTAGGTATTCTGCCGGAGCTTCTTTCCCGAAGGCCACTCAGAGCACACTCGTTTCGATAACGTCGGGAACAAGAATGTTTGTCAAGGAGAAAAGATTTGGTCACCGTTTTTCAGTTGCAAATAGTGATCAACTTTCAACAGATGCTAGTAATAAGGATACTGGCAGGGCTGCAGATTCATCTGCCAATGATCAGTTAACATCTACCAATCCTGCTCAGGCAGAATCACAGACACCAGAGGTTTCCAATGGATCTGCAGCATCTCCTAAGTCGCAACCTGTAACCACACGATCATCTCAGAAAGTGAGAGAGAGGATAAGGGCGGCTCGAGTTCTTAACCAGTCCAAGGAACCAAAAACAGCTAAATCAGAAATGGGAAGTAGTGTGTTGGCTGCTTTTAAAGAAAGTGACAGAGGGAAAAAGAGGAGAAGATCTGGACTTCCAGAAGCCCCTGGTAATTTGTTTGATGACAGCAAACGAGGGATGCCAAAGGAAGGTTGGACTTTTGATTTTCCTGGTGGTTCTGATCTCTTTCTGATTATATTTTCTTTTGTCTTTATCAGCACAGTGATGTTTGGAACAACTTACATTGTGTGGAAAGTTGGTGCAATCCATTTTAATGACTAA

Protein sequence

>Msa0463540

MAISLNPIISFTSTKLETNYHDASRYSAGASFPKATQSTLVSITSGTRMFVKEKRFGHRFSVANSDQLSTDASNKDTGRAADSSANDQLTSTNPAQAESQTPEVSNGSAASPKSQPVTTRSSQKVRERIRAARVLNQSKEPKTAKSEMGSSVLAAFKESDRGKKRRRSGLPEAPGNLFDDSKRGMPKEGWTFDFPGGSDLFLIIFSFVFISTVMFGTTYIVWKVGAIHFND*