AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1137800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1137800 MtrunA17_Chr7g0222751 88.333 240 5 3 1 217 1 240 2.86e-148 412
Msa1137800 MtrunA17_Chr1g0212681 33.508 191 104 3 49 217 45 234 6.72e-31 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1137800 AT3G55330.1 54.634 205 68 3 35 214 24 228 5.64e-69 211
Msa1137800 AT2G39470.1 34.615 182 95 3 58 217 59 238 3.66e-28 106
Msa1137800 AT2G39470.2 34.615 182 95 3 58 217 51 230 4.34e-28 106

Find 58 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAGGATATTAAAGAATT+TGG 0.087552 7_4:+6789972 Msa1137800:CDS
TAATATCCTGTTTGCTTGTT+GGG 0.249086 7_4:-6789962 None:intergenic
GTTGAATACAAGTTATAAAA+TGG 0.292625 7_4:+6793091 Msa1137800:intron
TTAATATCCTGTTTGCTTGT+TGG 0.307481 7_4:-6789963 None:intergenic
CTGGTTGTAATTCTTTATAT+TGG 0.310215 7_4:+6792825 Msa1137800:three_prime_UTR
TATTGGAGTCTTTGCAGTTA+TGG 0.340888 7_4:+6792842 Msa1137800:three_prime_UTR
AGAATTTGGGTCACCTGAAC+AGG 0.347867 7_4:+6789986 Msa1137800:CDS
AACAGGATATTAAAGAATTT+GGG 0.349485 7_4:+6789973 Msa1137800:CDS
GTAATCAAACTTTGAATAGT+TGG 0.362070 7_4:-6792731 None:intergenic
TGTAAACCTCTAACCTGTTC+AGG 0.390077 7_4:-6789999 None:intergenic
AAGGGATGCCATTGTTGGCT+TGG 0.406266 7_4:-6787671 None:intergenic
TTCAATCTTACAAGAAATTG+AGG 0.413204 7_4:-6789196 None:intergenic
GAACTGTCATCTTCTTCAAC+AGG 0.413644 7_4:+6787902 Msa1137800:CDS
CTGAAATCCTGTCTTATTAT+CGG 0.414796 7_4:-6789308 None:intergenic
TGCAGTTATGGTTGTTACTT+CGG 0.418177 7_4:+6792854 Msa1137800:three_prime_UTR
AGAGCATGTCGAGTGTAGTT+TGG 0.423846 7_4:-6792524 None:intergenic
TATTGTTCTATCTATGTGGT+TGG 0.427268 7_4:-6787609 None:intergenic
TCAATTCGAGTTCGTTGCTC+AGG 0.443149 7_4:+6792499 Msa1137800:CDS
CCATCTTTCCTATCCACAAC+TGG 0.446635 7_4:-6789331 None:intergenic
AAAAGATGAAAATGAAAGTC+AGG 0.448110 7_4:+6793149 Msa1137800:three_prime_UTR
CTTTCAAAACTCTTTCCCTC+AGG 0.455006 7_4:+6787723 Msa1137800:CDS
CAGGAGCAAATGAGAGAAGA+TGG 0.460380 7_4:+6792667 Msa1137800:CDS
CTCATTTGCTCCTGTAGTCA+AGG 0.464935 7_4:-6792658 None:intergenic
TAGTTGGAAGGATTCTACTA+TGG 0.474485 7_4:-6792715 None:intergenic
AATGATCCCAACAAGCAAAC+AGG 0.474787 7_4:+6789956 Msa1137800:CDS
GTTATATTTACCTAGGCAGA+AGG 0.491015 7_4:-6793119 None:intergenic
TCAATCTTACAAGAAATTGA+GGG 0.499708 7_4:-6789195 None:intergenic
CCAGTTGTGGATAGGAAAGA+TGG 0.501189 7_4:+6789331 Msa1137800:CDS
TGTTCTATCTATGTGGTTGG+AGG 0.504242 7_4:-6787606 None:intergenic
TGTCGCCAGCGTGAAATTGA+CGG 0.507223 7_4:+6792464 Msa1137800:intron
AAATATAATAAACTCTTCAT+CGG 0.507642 7_4:+6792775 Msa1137800:three_prime_UTR
GCTCTCAGCGCAGTCTCCAT+TGG 0.509239 7_4:+6792542 Msa1137800:CDS
GTTATATTGTTCTATCTATG+TGG 0.512537 7_4:-6787613 None:intergenic
GTCTGAAGGGATGCCATTGT+TGG 0.514922 7_4:-6787676 None:intergenic
AGTGATTGAAGGTCAAGATA+AGG 0.519938 7_4:+6789890 Msa1137800:CDS
TCAAACTTTGAATAGTTGGA+AGG 0.520854 7_4:-6792727 None:intergenic
GACAGGATTTCAGCCAGTTG+TGG 0.527616 7_4:+6789318 Msa1137800:CDS
GATTTCAGCCAGTTGTGGAT+AGG 0.527897 7_4:+6789323 Msa1137800:CDS
AGGAGCAAATGAGAGAAGAT+GGG 0.535543 7_4:+6792668 Msa1137800:CDS
TAGCTGCAATGGCAATTGCT+TGG 0.536048 7_4:-6789143 None:intergenic
GGGCAGGAAGTAGTGATTGA+AGG 0.544637 7_4:+6789879 Msa1137800:CDS
AATGGCAAACCCTTCTGCCT+AGG 0.549644 7_4:+6793109 Msa1137800:three_prime_UTR
TGCAAAATCCAAGCCAACAA+TGG 0.558415 7_4:+6787663 Msa1137800:exon
TCTTACAAGAAATTGAGGGT+TGG 0.559648 7_4:-6789191 None:intergenic
GGACATGAGAGGATAGGTTG+TGG 0.564414 7_4:+6787540 None:intergenic
TAATGGTGCAGTAGCTGCAA+TGG 0.569156 7_4:-6789154 None:intergenic
CAAAACCATACCATTGCCAA+TGG 0.582170 7_4:-6792558 None:intergenic
GTTGCCGCCGATAATAAGAC+AGG 0.584506 7_4:+6789301 Msa1137800:intron
AGCGCAGTCTCCATTGGCAA+TGG 0.595444 7_4:+6792548 Msa1137800:CDS
AAGAGAGTTCTGTGAAGTGT+AGG 0.598758 7_4:-6787703 None:intergenic
GGAGCAAATGAGAGAAGATG+GGG 0.614825 7_4:+6792669 Msa1137800:CDS
TTATATTTACCTAGGCAGAA+GGG 0.619399 7_4:-6793118 None:intergenic
GAAGTGTAGGTGAAGTCTGA+AGG 0.619544 7_4:-6787690 None:intergenic
GTGATTGTGTTGCAGAAGCA+TGG 0.631048 7_4:+6787812 Msa1137800:intron
AAGTGTAGGTGAAGTCTGAA+GGG 0.633332 7_4:-6787689 None:intergenic
AAATCCTGTCTTATTATCGG+CGG 0.658599 7_4:-6789305 None:intergenic
GAGCAAATGAGAGAAGATGG+GGG 0.714606 7_4:+6792670 Msa1137800:CDS
ATTGTGTTGCAGAAGCATGG+TGG 0.785934 7_4:+6787815 Msa1137800:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTTCTAAAATTATTAT+TGG + chr7_4:6788232-6788251 Msa1137800:intron 10.0%
!! TTAAATCATTTATCAATAAA+AGG + chr7_4:6789808-6789827 Msa1137800:intron 10.0%
!!! AACAATTTTTTTTTTAAACT+CGG + chr7_4:6792910-6792929 Msa1137800:intron 10.0%
!!! TTAACCATTCATTATTTTAT+CGG - chr7_4:6788658-6788677 None:intergenic 15.0%
!!! ATTTGTTTTCAATAGAATTT+TGG + chr7_4:6788697-6788716 Msa1137800:intron 15.0%
!!! TTTGTTTTCAATAGAATTTT+GGG + chr7_4:6788698-6788717 Msa1137800:intron 15.0%
!! GTTAAAACATGTAAATTAAT+AGG - chr7_4:6789051-6789070 None:intergenic 15.0%
!!! CTTATTTTAAATTTGTTTTC+AGG + chr7_4:6790074-6790093 Msa1137800:intron 15.0%
!! TTATTTGAAGAAGATAAAAA+TGG - chr7_4:6791492-6791511 None:intergenic 15.0%
!!! TAATTAAATTGTTTCTCTAA+AGG + chr7_4:6791734-6791753 Msa1137800:intron 15.0%
!!! AATTAAATTGTTTCTCTAAA+GGG + chr7_4:6791735-6791754 Msa1137800:intron 15.0%
!! ACATATTAAAAAATGTGATT+AGG - chr7_4:6792137-6792156 None:intergenic 15.0%
!! AAATATAATAAACTCTTCAT+CGG + chr7_4:6792775-6792794 Msa1137800:three_prime_UTR 15.0%
!!! ACAATTTTTTTTTTAAACTC+GGG + chr7_4:6792911-6792930 Msa1137800:intron 15.0%
!!! ATGTTAGTGATTAATTTGTT+CGG - chr7_4:6788632-6788651 None:intergenic 20.0%
!!! TTGTTTTAATAAACTCCTTA+TGG - chr7_4:6788779-6788798 None:intergenic 20.0%
!! AAGCAAAAAAAAGAAAATCA+CGG + chr7_4:6789741-6789760 Msa1137800:intron 20.0%
!! TTATCAATAAAAGGCTAAAA+TGG + chr7_4:6789817-6789836 Msa1137800:intron 20.0%
!! AAACAGGATATTAAAGAATT+TGG + chr7_4:6789972-6789991 Msa1137800:CDS 20.0%
!! AACAGGATATTAAAGAATTT+GGG + chr7_4:6789973-6789992 Msa1137800:CDS 20.0%
!! TTATAATGACATAAAAAGCA+AGG - chr7_4:6790194-6790213 None:intergenic 20.0%
!! AATATATCTCTCAATTTGTA+AGG + chr7_4:6790939-6790958 Msa1137800:intron 20.0%
!! TAAAATAAGACAATCCAAAT+AGG - chr7_4:6791558-6791577 None:intergenic 20.0%
!!! TTTACCTTTTGTTATAGAAA+TGG + chr7_4:6791682-6791701 Msa1137800:intron 20.0%
!!! TTTTAACCAAAAAATTGAAG+TGG - chr7_4:6791827-6791846 None:intergenic 20.0%
!! AGTAATCATATTTACCATTT+AGG + chr7_4:6791894-6791913 Msa1137800:intron 20.0%
!!! TTTGGACAATATTTCTAAAT+TGG - chr7_4:6791943-6791962 None:intergenic 20.0%
!! TTATTAATTATTACACGCTA+GGG - chr7_4:6792197-6792216 None:intergenic 20.0%
!! TTTATTAATTATTACACGCT+AGG - chr7_4:6792198-6792217 None:intergenic 20.0%
!!! TTCATTTTTGAGTTTATATC+TGG + chr7_4:6792806-6792825 Msa1137800:three_prime_UTR 20.0%
!!! CAATTTTTTTTTTAAACTCG+GGG + chr7_4:6792912-6792931 Msa1137800:intron 20.0%
!! TTATGATAAACATTGATGAA+TGG - chr7_4:6793061-6793080 None:intergenic 20.0%
!! TGTTTATCATAAACAGTTTA+TGG + chr7_4:6793069-6793088 Msa1137800:intron 20.0%
!! GTTGAATACAAGTTATAAAA+TGG + chr7_4:6793091-6793110 Msa1137800:intron 20.0%
! GTTATATTGTTCTATCTATG+TGG - chr7_4:6787616-6787635 None:intergenic 25.0%
! ACACTTCTATACATAAAACT+TGG + chr7_4:6788135-6788154 Msa1137800:intron 25.0%
!! TTCGATTCTTATGTTTTCTA+AGG + chr7_4:6788342-6788361 Msa1137800:intron 25.0%
!!! TTCTTATGTTTTCTAAGGAT+AGG + chr7_4:6788347-6788366 Msa1137800:intron 25.0%
!!! TGTTAGTGATTAATTTGTTC+GGG - chr7_4:6788631-6788650 None:intergenic 25.0%
! TTTGCCGATAAAATAATGAA+TGG + chr7_4:6788651-6788670 Msa1137800:intron 25.0%
!! TGTATTTGATGACAAAAACA+CGG - chr7_4:6788860-6788879 None:intergenic 25.0%
!!! TAACGTCTTGTTTATGTTTT+TGG + chr7_4:6788972-6788991 Msa1137800:intron 25.0%
!! ATACTTTTGTCAGATATATC+AGG + chr7_4:6789114-6789133 Msa1137800:intron 25.0%
! TCAATCTTACAAGAAATTGA+GGG - chr7_4:6789198-6789217 None:intergenic 25.0%
! TTCAATCTTACAAGAAATTG+AGG - chr7_4:6789199-6789218 None:intergenic 25.0%
! GTAGGGCTAAAAATAATATA+GGG - chr7_4:6789465-6789484 None:intergenic 25.0%
! TGTAGGGCTAAAAATAATAT+AGG - chr7_4:6789466-6789485 None:intergenic 25.0%
!!! ATATCATAAACCGTCATTTT+TGG + chr7_4:6789486-6789505 Msa1137800:intron 25.0%
! ATGTTAAAAAAAGCTGATGT+TGG + chr7_4:6789526-6789545 Msa1137800:intron 25.0%
! ATTAAGAAAACCAATGTCAT+AGG + chr7_4:6789623-6789642 Msa1137800:intron 25.0%
! AAAACTGACACCAAAAATTA+TGG + chr7_4:6789696-6789715 Msa1137800:intron 25.0%
!! AACTCTGATAAAAAAGGTTT+TGG + chr7_4:6790104-6790123 Msa1137800:intron 25.0%
!!! ATTATCTTTGTTTTCTGGTT+TGG - chr7_4:6790135-6790154 None:intergenic 25.0%
! TGAACAAATAAAAACCAAAC+TGG - chr7_4:6790366-6790385 None:intergenic 25.0%
! ATGGAATAGTATACTAATGA+TGG + chr7_4:6790417-6790436 Msa1137800:intron 25.0%
! TGGAATAGTATACTAATGAT+GGG + chr7_4:6790418-6790437 Msa1137800:intron 25.0%
! GATTACATGAACAAATTGTT+GGG + chr7_4:6790702-6790721 Msa1137800:intron 25.0%
! TATTCCCATTATCATTATAG+TGG - chr7_4:6790887-6790906 None:intergenic 25.0%
! AATAAGCCAAAAACAACTTA+TGG - chr7_4:6791599-6791618 None:intergenic 25.0%
! TAAGCCATTTCTATAACAAA+AGG - chr7_4:6791689-6791708 None:intergenic 25.0%
! AATATTCATACACAAGTTAG+TGG + chr7_4:6791772-6791791 Msa1137800:intron 25.0%
!!! GAATATCCACTTCAATTTTT+TGG + chr7_4:6791818-6791837 Msa1137800:intron 25.0%
! AGAAATATTGTCCAAAAGAA+AGG + chr7_4:6791947-6791966 Msa1137800:intron 25.0%
! GAAATATTGTCCAAAAGAAA+GGG + chr7_4:6791948-6791967 Msa1137800:intron 25.0%
! ACACAACAAGATTAAGATTT+AGG - chr7_4:6792078-6792097 None:intergenic 25.0%
!!! CTAAATTATTTTTTGGTTGC+AGG + chr7_4:6792624-6792643 Msa1137800:intron 25.0%
! GTAATCAAACTTTGAATAGT+TGG - chr7_4:6792734-6792753 None:intergenic 25.0%
! CTGGTTGTAATTCTTTATAT+TGG + chr7_4:6792825-6792844 Msa1137800:three_prime_UTR 25.0%
! GGAAAAAGTTATATTTACCT+AGG - chr7_4:6793129-6793148 None:intergenic 25.0%
!! TGACTTTCATTTTCATCTTT+TGG - chr7_4:6793150-6793169 None:intergenic 25.0%
! AAAAGATGAAAATGAAAGTC+AGG + chr7_4:6793149-6793168 Msa1137800:three_prime_UTR 25.0%
! TGGTTACACTTTTAGCATAA+TGG + chr7_4:6787560-6787579 Msa1137800:five_prime_UTR 30.0%
TATTGTTCTATCTATGTGGT+TGG - chr7_4:6787612-6787631 None:intergenic 30.0%
ACTATCAGAAGCAAAAAAGA+AGG - chr7_4:6787794-6787813 None:intergenic 30.0%
TATGTATGTATTATGCAGCA+TGG + chr7_4:6788002-6788021 Msa1137800:intron 30.0%
! TATTATTGGTGTCTTTGTGT+CGG + chr7_4:6788246-6788265 Msa1137800:intron 30.0%
ACTTGTACTACATGAAGAAT+TGG + chr7_4:6788304-6788323 Msa1137800:intron 30.0%
CAATAAGTGAATTTGATGAG+TGG + chr7_4:6788498-6788517 Msa1137800:intron 30.0%
!! TTAGTGATTAATTTGTTCGG+GGG - chr7_4:6788629-6788648 None:intergenic 30.0%
!! GTTAGTGATTAATTTGTTCG+GGG - chr7_4:6788630-6788649 None:intergenic 30.0%
!!! TCAATAGAATTTTGGGTTGA+CGG + chr7_4:6788705-6788724 Msa1137800:intron 30.0%
GAATGTATAACGAACAATCT+CGG + chr7_4:6788902-6788921 Msa1137800:intron 30.0%
TGGTTTATATGATATCTGTG+AGG - chr7_4:6788934-6788953 None:intergenic 30.0%
! TTTTGTCAGATATATCAGGA+AGG + chr7_4:6789118-6789137 Msa1137800:intron 30.0%
TGGTTGAACAGAAAAACTAA+TGG - chr7_4:6789174-6789193 None:intergenic 30.0%
! CTGAAATCCTGTCTTATTAT+CGG - chr7_4:6789311-6789330 None:intergenic 30.0%
AAAGTTCGCTATATTTGCAA+GGG - chr7_4:6789433-6789452 None:intergenic 30.0%
TGACGGTTTATGATATTGTA+GGG - chr7_4:6789482-6789501 None:intergenic 30.0%
ATGACGGTTTATGATATTGT+AGG - chr7_4:6789483-6789502 None:intergenic 30.0%
AAAGGCTAAAATGGAAGTTA+AGG + chr7_4:6789826-6789845 Msa1137800:intron 30.0%
TAATATCCTGTTTGCTTGTT+GGG - chr7_4:6789965-6789984 None:intergenic 30.0%
TTAATATCCTGTTTGCTTGT+TGG - chr7_4:6789966-6789985 None:intergenic 30.0%
!!! CCTGAATTATCTTTGTTTTC+TGG - chr7_4:6790140-6790159 None:intergenic 30.0%
CCAGAAAACAAAGATAATTC+AGG + chr7_4:6790137-6790156 Msa1137800:intron 30.0%
!!! TTTTTTGAACAGTTCAACTG+TGG - chr7_4:6790302-6790321 None:intergenic 30.0%
!!! ATTCCAATCTTATTTTGGCA+AGG + chr7_4:6790476-6790495 Msa1137800:intron 30.0%
TATCCTTGCCAAAATAAGAT+TGG - chr7_4:6790482-6790501 None:intergenic 30.0%
CAAGGATAATTTAGATGACT+TGG + chr7_4:6790494-6790513 Msa1137800:intron 30.0%
AAACTACAGTTACTACATGA+AGG - chr7_4:6790533-6790552 None:intergenic 30.0%
GGATTACATGAACAAATTGT+TGG + chr7_4:6790701-6790720 Msa1137800:intron 30.0%
!!! TATAGTGGAGGTTTTTTAAG+AGG - chr7_4:6790872-6790891 None:intergenic 30.0%
AACCTCCACTATAATGATAA+TGG + chr7_4:6790879-6790898 Msa1137800:intron 30.0%
ACCTCCACTATAATGATAAT+GGG + chr7_4:6790880-6790899 Msa1137800:intron 30.0%
CATACATTTGACAAAATGGA+AGG - chr7_4:6791290-6791309 None:intergenic 30.0%
CCAACATACATTTGACAAAA+TGG - chr7_4:6791294-6791313 None:intergenic 30.0%
! CCATTTTGTCAAATGTATGT+TGG + chr7_4:6791291-6791310 Msa1137800:intron 30.0%
TCATTCAACTACATTTGTGT+GGG - chr7_4:6791337-6791356 None:intergenic 30.0%
ATGTAGTTGAATGAGATATC+AGG + chr7_4:6791343-6791362 Msa1137800:intron 30.0%
!! AATAATATCATGAGTGTTGG+CGG - chr7_4:6791463-6791482 None:intergenic 30.0%
AGCAATAATATCATGAGTGT+TGG - chr7_4:6791466-6791485 None:intergenic 30.0%
ACTGATGTTTAGATGAATAC+CGG + chr7_4:6791528-6791547 Msa1137800:intron 30.0%
!! ACATGTCCATAAGTTGTTTT+TGG + chr7_4:6791590-6791609 Msa1137800:intron 30.0%
GTTATAGAAATGGCTTACAT+AGG + chr7_4:6791692-6791711 Msa1137800:intron 30.0%
AAATTGGATATATCTTCACC+AGG - chr7_4:6791927-6791946 None:intergenic 30.0%
!! ATATTGACTACCCTTTCTTT+TGG - chr7_4:6791961-6791980 None:intergenic 30.0%
!! TTTTAGCTAAGCTTCAAACT+CGG - chr7_4:6792297-6792316 None:intergenic 30.0%
AGCTTAGCTAAAACAATCAT+CGG + chr7_4:6792304-6792323 Msa1137800:intron 30.0%
TCAAACTTTGAATAGTTGGA+AGG - chr7_4:6792730-6792749 None:intergenic 30.0%
AATTAGTTAATCCTCGGAAT+TGG - chr7_4:6792938-6792957 None:intergenic 30.0%
CTCTCAAATTAGTTAATCCT+CGG - chr7_4:6792944-6792963 None:intergenic 30.0%
TTATATTTACCTAGGCAGAA+GGG - chr7_4:6793121-6793140 None:intergenic 30.0%
! AGTACTTTTCGTAGAAGAGA+AGG + chr7_4:6787851-6787870 Msa1137800:CDS 35.0%
CTTTAGATTGAATGTGTGTC+CGG + chr7_4:6788028-6788047 Msa1137800:intron 35.0%
! TGGTTCATCTTGTTGGTTAT+TGG + chr7_4:6788455-6788474 Msa1137800:intron 35.0%
! GGTTCATCTTGTTGGTTATT+GGG + chr7_4:6788456-6788475 Msa1137800:intron 35.0%
! GTTCATCTTGTTGGTTATTG+GGG + chr7_4:6788457-6788476 Msa1137800:intron 35.0%
!!! CAATAGAATTTTGGGTTGAC+GGG + chr7_4:6788706-6788725 Msa1137800:intron 35.0%
AGTTTCTTGAAGTTGCCATA+AGG + chr7_4:6788761-6788780 Msa1137800:intron 35.0%
CAAGTACGAAAACACTATCA+GGG - chr7_4:6788883-6788902 None:intergenic 35.0%
TCAAGTACGAAAACACTATC+AGG - chr7_4:6788884-6788903 None:intergenic 35.0%
TAGTCAAGATTGTTCATGTG+TGG - chr7_4:6788954-6788973 None:intergenic 35.0%
TCTTACAAGAAATTGAGGGT+TGG - chr7_4:6789194-6789213 None:intergenic 35.0%
! CATATCAAGGGTATATTCTC+AGG - chr7_4:6789276-6789295 None:intergenic 35.0%
CTGAGAATATACCCTTGATA+TGG + chr7_4:6789274-6789293 Msa1137800:intron 35.0%
! AAATCCTGTCTTATTATCGG+CGG - chr7_4:6789308-6789327 None:intergenic 35.0%
! TATCAGTTTGTCTACCCTTT+TGG + chr7_4:6789355-6789374 Msa1137800:intron 35.0%
CAAAGTTCGCTATATTTGCA+AGG - chr7_4:6789434-6789453 None:intergenic 35.0%
ACATCAGAGACCAAAAATGA+CGG - chr7_4:6789499-6789518 None:intergenic 35.0%
!!! TCATTTTTGGTCTCTGATGT+TGG + chr7_4:6789499-6789518 Msa1137800:intron 35.0%
TCTGTTGAAAAAAGCTGATG+TGG - chr7_4:6789670-6789689 None:intergenic 35.0%
! GTATCAGCGACCATAATTTT+TGG - chr7_4:6789709-6789728 None:intergenic 35.0%
!!! TTTTTTGCTTTTTACCCCTG+CGG - chr7_4:6789731-6789750 None:intergenic 35.0%
TCAAAGTTCGTTATATCTGC+AGG + chr7_4:6789771-6789790 Msa1137800:intron 35.0%
CAAAGTTCGTTATATCTGCA+GGG + chr7_4:6789772-6789791 Msa1137800:intron 35.0%
AAAGTTCGTTATATCTGCAG+GGG + chr7_4:6789773-6789792 Msa1137800:intron 35.0%
! AGCTCCTTTTTCTTTTGTCA+TGG + chr7_4:6789851-6789870 Msa1137800:intron 35.0%
! GCTCCTTTTTCTTTTGTCAT+GGG + chr7_4:6789852-6789871 Msa1137800:intron 35.0%
! CTCCTTTTTCTTTTGTCATG+GGG + chr7_4:6789853-6789872 Msa1137800:intron 35.0%
AGTGATTGAAGGTCAAGATA+AGG + chr7_4:6789890-6789909 Msa1137800:CDS 35.0%
TGCTGCAACTCTGATAAAAA+AGG + chr7_4:6790098-6790117 Msa1137800:CDS 35.0%
!!! ATCTTTGTTTTCTGGTTTGG+AGG - chr7_4:6790132-6790151 None:intergenic 35.0%
AAAGATAATTCAGGCAACTG+AGG + chr7_4:6790146-6790165 Msa1137800:intron 35.0%
! CAACAAGTTGAACCATGAAT+TGG - chr7_4:6790337-6790356 None:intergenic 35.0%
CAAATAAAAACCAAACTGGC+CGG - chr7_4:6790362-6790381 None:intergenic 35.0%
GTATACTATTCCATTCTTCC+AGG - chr7_4:6790411-6790430 None:intergenic 35.0%
! GATTTTACCAATGTCAAGAG+TGG + chr7_4:6790440-6790459 Msa1137800:intron 35.0%
!! CTCGCATTCCAATCTTATTT+TGG + chr7_4:6790471-6790490 Msa1137800:intron 35.0%
!!! TAGTGCCTATTTTGAGTTCA+CGG - chr7_4:6790752-6790771 None:intergenic 35.0%
AAACCTTCTCAAAGTGAGAA+AGG + chr7_4:6790824-6790843 Msa1137800:intron 35.0%
AACCTTCTCAAAGTGAGAAA+GGG + chr7_4:6790825-6790844 Msa1137800:intron 35.0%
TCCCATTATCATTATAGTGG+AGG - chr7_4:6790884-6790903 None:intergenic 35.0%
AATACAACAACTTCACCCTT+AGG + chr7_4:6790903-6790922 Msa1137800:intron 35.0%
TTGTAGTAAGATCCACCTAA+GGG - chr7_4:6790921-6790940 None:intergenic 35.0%
ATTGTAGTAAGATCCACCTA+AGG - chr7_4:6790922-6790941 None:intergenic 35.0%
TAAGGAACACTCTCACAAAT+TGG + chr7_4:6790957-6790976 Msa1137800:intron 35.0%
TCACAAGAAAACTCTCTATG+AGG + chr7_4:6790993-6791012 Msa1137800:intron 35.0%
!! TTCTTGTTGTTCTTCTCTTG+TGG + chr7_4:6791055-6791074 Msa1137800:intron 35.0%
TTGCTCATGGTCCTATTTAT+AGG + chr7_4:6791092-6791111 Msa1137800:intron 35.0%
TCAAATGTATGTTGGACATG+TGG + chr7_4:6791299-6791318 Msa1137800:intron 35.0%
CATTCAACTACATTTGTGTG+GGG - chr7_4:6791336-6791355 None:intergenic 35.0%
CTCATTCAACTACATTTGTG+TGG - chr7_4:6791338-6791357 None:intergenic 35.0%
TAGTTGAATGAGATATCAGG+CGG + chr7_4:6791346-6791365 Msa1137800:intron 35.0%
!! ATAATATCATGAGTGTTGGC+GGG - chr7_4:6791462-6791481 None:intergenic 35.0%
ATGTTTAGATGAATACCGGT+TGG + chr7_4:6791532-6791551 Msa1137800:intron 35.0%
TTCATACACAAGTTAGTGGT+AGG + chr7_4:6791776-6791795 Msa1137800:intron 35.0%
CAAGTTAGTGGTAGGAAATA+TGG + chr7_4:6791784-6791803 Msa1137800:intron 35.0%
!!! AGAATTTTTTTAGCTTCCCG+AGG + chr7_4:6791851-6791870 Msa1137800:intron 35.0%
TACCATTTAGGAATCATTCC+TGG + chr7_4:6791906-6791925 Msa1137800:intron 35.0%
ATTGTGTTACCAAGTTGTTG+AGG + chr7_4:6792225-6792244 Msa1137800:intron 35.0%
GGATTAATGATCTTCAGCTA+AGG + chr7_4:6792252-6792271 Msa1137800:intron 35.0%
TTTAGCTAAGCTTCAAACTC+GGG - chr7_4:6792296-6792315 None:intergenic 35.0%
! AAGTTTTACACCTTGACTAC+AGG + chr7_4:6792648-6792667 Msa1137800:CDS 35.0%
TAGTTGGAAGGATTCTACTA+TGG - chr7_4:6792718-6792737 None:intergenic 35.0%
TATTGGAGTCTTTGCAGTTA+TGG + chr7_4:6792842-6792861 Msa1137800:three_prime_UTR 35.0%
! TGCAGTTATGGTTGTTACTT+CGG + chr7_4:6792854-6792873 Msa1137800:three_prime_UTR 35.0%
CGAGGATTAACTAATTTGAG+AGG + chr7_4:6792942-6792961 Msa1137800:intron 35.0%
GTTATATTTACCTAGGCAGA+AGG - chr7_4:6793122-6793141 None:intergenic 35.0%
TGTTCTATCTATGTGGTTGG+AGG - chr7_4:6787609-6787628 None:intergenic 40.0%
TGCAAAATCCAAGCCAACAA+TGG + chr7_4:6787663-6787682 Msa1137800:exon 40.0%
AAGTGTAGGTGAAGTCTGAA+GGG - chr7_4:6787692-6787711 None:intergenic 40.0%
AAGAGAGTTCTGTGAAGTGT+AGG - chr7_4:6787706-6787725 None:intergenic 40.0%
CTTTCAAAACTCTTTCCCTC+AGG + chr7_4:6787723-6787742 Msa1137800:CDS 40.0%
!! TAATGCATGAGAGTACCTGA+GGG - chr7_4:6787741-6787760 None:intergenic 40.0%
!! TTAATGCATGAGAGTACCTG+AGG - chr7_4:6787742-6787761 None:intergenic 40.0%
GGTACTCTCATGCATTAACT+TGG + chr7_4:6787744-6787763 Msa1137800:intron 40.0%
GAACTGTCATCTTCTTCAAC+AGG + chr7_4:6787902-6787921 Msa1137800:CDS 40.0%
! TTCAACAGGTTGCTTTCTCA+AGG + chr7_4:6787916-6787935 Msa1137800:intron 40.0%
!! GTCGGTGTCAATATTGTATC+CGG + chr7_4:6788264-6788283 Msa1137800:intron 40.0%
GTAAAGTACAACACGAACAC+CGG - chr7_4:6788286-6788305 None:intergenic 40.0%
GAATCCATGGTCGTTAATGT+AGG + chr7_4:6788399-6788418 Msa1137800:intron 40.0%
TTGCACAATGCATCTTCATC+AGG - chr7_4:6788435-6788454 None:intergenic 40.0%
GATGAAGATGCATTGTGCAA+TGG + chr7_4:6788435-6788454 Msa1137800:intron 40.0%
TGTGCAATGGTTCATCTTGT+TGG + chr7_4:6788448-6788467 Msa1137800:intron 40.0%
!! TGTTGGTTATTGGGGTGTTT+TGG + chr7_4:6788465-6788484 Msa1137800:intron 40.0%
ACACCGAAGGAATTCTATGT+AGG + chr7_4:6788564-6788583 Msa1137800:intron 40.0%
CCTCCTACATAGAATTCCTT+CGG - chr7_4:6788570-6788589 None:intergenic 40.0%
GGTTGACGGGAATTGAAAAA+TGG + chr7_4:6788719-6788738 Msa1137800:intron 40.0%
!! CAAAAACACGGAGAAGTGTT+TGG - chr7_4:6788848-6788867 None:intergenic 40.0%
TATTTAGGAAAGACAGCAGG+TGG - chr7_4:6789239-6789258 None:intergenic 40.0%
CAGTATTTAGGAAAGACAGC+AGG - chr7_4:6789242-6789261 None:intergenic 40.0%
GACGTCAGGAATCAGTATTT+AGG - chr7_4:6789254-6789273 None:intergenic 40.0%
! AGTTTGTCTACCCTTTTGGA+TGG + chr7_4:6789359-6789378 Msa1137800:intron 40.0%
! AGCTGATGTTGGTAAACGTT+TGG + chr7_4:6789537-6789556 Msa1137800:intron 40.0%
!! TTGGTAAACGTTTGGTGATG+TGG + chr7_4:6789545-6789564 Msa1137800:intron 40.0%
CTCCCCATGACAAAAGAAAA+AGG - chr7_4:6789858-6789877 None:intergenic 40.0%
! TTTTCTTTTGTCATGGGGAG+TGG + chr7_4:6789858-6789877 Msa1137800:intron 40.0%
! TTTCTTTTGTCATGGGGAGT+GGG + chr7_4:6789859-6789878 Msa1137800:intron 40.0%
AATGATCCCAACAAGCAAAC+AGG + chr7_4:6789956-6789975 Msa1137800:CDS 40.0%
TGTAAACCTCTAACCTGTTC+AGG - chr7_4:6790002-6790021 None:intergenic 40.0%
AAACGAACCAGACAGCAAAT+TGG + chr7_4:6790223-6790242 Msa1137800:intron 40.0%
AGTTCAACTGTGGTTCTTCT+TGG - chr7_4:6790292-6790311 None:intergenic 40.0%
!! CATGGTTCAACTTGTTGAAC+CGG + chr7_4:6790340-6790359 Msa1137800:intron 40.0%
!!! TATTTTGAGTTCACGGAGGA+GGG - chr7_4:6790745-6790764 None:intergenic 40.0%
GAACTCAAAATAGGCACTAG+CGG + chr7_4:6790753-6790772 Msa1137800:intron 40.0%
!! ACACAGAGAGAATTTTAGCG+TGG + chr7_4:6790800-6790819 Msa1137800:intron 40.0%
! TTCCCTTTCTCACTTTGAGA+AGG - chr7_4:6790830-6790849 None:intergenic 40.0%
AGTGAGAAAGGGAAAAACCA+CGG + chr7_4:6790836-6790855 Msa1137800:intron 40.0%
!!! AGGTTTTTTAAGAGGCCCAA+GGG - chr7_4:6790864-6790883 None:intergenic 40.0%
! GATGACTTTTCTCTTGAGCA+AGG + chr7_4:6791015-6791034 Msa1137800:intron 40.0%
GTGTTGTGAATGTTTGCTCA+TGG + chr7_4:6791079-6791098 Msa1137800:intron 40.0%
CTCATGGTCCTATTTATAGG+AGG + chr7_4:6791095-6791114 Msa1137800:intron 40.0%
TCATGCATGTAAGGCAACTT+TGG - chr7_4:6791127-6791146 None:intergenic 40.0%
CAAGTGTCTTCATGCATGTA+AGG - chr7_4:6791136-6791155 None:intergenic 40.0%
!!! CACTTGGTGTTTTGCATGAA+AGG - chr7_4:6791166-6791185 None:intergenic 40.0%
TGTATGAGTGACACATGTTG+TGG - chr7_4:6791232-6791251 None:intergenic 40.0%
AGTTGAATGAGATATCAGGC+GGG + chr7_4:6791347-6791366 Msa1137800:intron 40.0%
GGCTTACATAGGCACTAATA+CGG + chr7_4:6791703-6791722 Msa1137800:intron 40.0%
! GTTTCTCTAAAGGGTCTTAG+TGG + chr7_4:6791744-6791763 Msa1137800:intron 40.0%
TCCCGAGGATATTTAGCAAA+AGG + chr7_4:6791866-6791885 Msa1137800:intron 40.0%
! CCCTTTTGCTAAATATCCTC+GGG - chr7_4:6791870-6791889 None:intergenic 40.0%
CCCGAGGATATTTAGCAAAA+GGG + chr7_4:6791867-6791886 Msa1137800:intron 40.0%
! CCCCTTTTGCTAAATATCCT+CGG - chr7_4:6791871-6791890 None:intergenic 40.0%
CCGAGGATATTTAGCAAAAG+GGG + chr7_4:6791868-6791887 Msa1137800:intron 40.0%
CACCAGGAATGATTCCTAAA+TGG - chr7_4:6791911-6791930 None:intergenic 40.0%
TTACCAAGTTGTTGAGGTCA+CGG + chr7_4:6792231-6792250 Msa1137800:intron 40.0%
TGGATTACGAGAGTTTGATC+AGG - chr7_4:6792347-6792366 None:intergenic 40.0%
TAACCCTCCTGTTTCCAAAA+GGG - chr7_4:6792373-6792392 None:intergenic 40.0%
TTAACCCTCCTGTTTCCAAA+AGG - chr7_4:6792374-6792393 None:intergenic 40.0%
CAAAACCATACCATTGCCAA+TGG - chr7_4:6792561-6792580 None:intergenic 40.0%
! CATTGGCAATGGTATGGTTT+TGG + chr7_4:6792559-6792578 Msa1137800:intron 40.0%
AGGAGCAAATGAGAGAAGAT+GGG + chr7_4:6792668-6792687 Msa1137800:CDS 40.0%
!! ACTCTACCCTGGCTTTAAAT+GGG - chr7_4:6792995-6793014 None:intergenic 40.0%
!! AACTCTACCCTGGCTTTAAA+TGG - chr7_4:6792996-6793015 None:intergenic 40.0%
AGTCATACATAACTCTACCC+TGG - chr7_4:6793006-6793025 None:intergenic 40.0%
GAAGTGTAGGTGAAGTCTGA+AGG - chr7_4:6787693-6787712 None:intergenic 45.0%
GTGATTGTGTTGCAGAAGCA+TGG + chr7_4:6787812-6787831 Msa1137800:intron 45.0%
! ATTGTGTTGCAGAAGCATGG+TGG + chr7_4:6787815-6787834 Msa1137800:intron 45.0%
AGACACATAACGTCAGACAC+CGG - chr7_4:6788050-6788069 None:intergenic 45.0%
TGTCTGACGTTATGTGTCTG+TGG + chr7_4:6788051-6788070 Msa1137800:intron 45.0%
TGTGTCAGTGTCATACACTG+TGG - chr7_4:6788097-6788116 None:intergenic 45.0%
ACTGAACCTGCTTGAATCCA+TGG + chr7_4:6788386-6788405 Msa1137800:intron 45.0%
TAACGACCATGGATTCAAGC+AGG - chr7_4:6788395-6788414 None:intergenic 45.0%
TCTGCCTACATTAACGACCA+TGG - chr7_4:6788406-6788425 None:intergenic 45.0%
TGGTTAAAGTCAGTCCCTGA+AGG + chr7_4:6788518-6788537 Msa1137800:intron 45.0%
AAGGAGTAGCTCAGTGGTAT+AGG + chr7_4:6788537-6788556 Msa1137800:intron 45.0%
CCGAAGGAATTCTATGTAGG+AGG + chr7_4:6788567-6788586 Msa1137800:intron 45.0%
!! GTGATTAATTTGTTCGGGGG+AGG - chr7_4:6788626-6788645 None:intergenic 45.0%
TAGCTGCAATGGCAATTGCT+TGG - chr7_4:6789146-6789165 None:intergenic 45.0%
TAATGGTGCAGTAGCTGCAA+TGG - chr7_4:6789157-6789176 None:intergenic 45.0%
GATTTCAGCCAGTTGTGGAT+AGG + chr7_4:6789323-6789342 Msa1137800:CDS 45.0%
CCATCTTTCCTATCCACAAC+TGG - chr7_4:6789334-6789353 None:intergenic 45.0%
CCAGTTGTGGATAGGAAAGA+TGG + chr7_4:6789331-6789350 Msa1137800:CDS 45.0%
TGATGTGGCAAGATGTGACT+AGG + chr7_4:6789560-6789579 Msa1137800:intron 45.0%
GATGTGGCAAGATGTGACTA+GGG + chr7_4:6789561-6789580 Msa1137800:intron 45.0%
ACACACAGCACCTATGACAT+TGG - chr7_4:6789636-6789655 None:intergenic 45.0%
AGAATTTGGGTCACCTGAAC+AGG + chr7_4:6789986-6790005 Msa1137800:CDS 45.0%
GAACCAGACAGCAAATTGGT+GGG + chr7_4:6790227-6790246 Msa1137800:intron 45.0%
TTGGTGGGACTGTTTGTTCT+TGG + chr7_4:6790242-6790261 Msa1137800:intron 45.0%
TTGTTCAGCAGCCATCTATG+TGG + chr7_4:6790379-6790398 Msa1137800:intron 45.0%
CTACATGCCACTCTTGACAT+TGG - chr7_4:6790450-6790469 None:intergenic 45.0%
!!! CTATTTTGAGTTCACGGAGG+AGG - chr7_4:6790746-6790765 None:intergenic 45.0%
CTCCTCCGTGAACTCAAAAT+AGG + chr7_4:6790744-6790763 Msa1137800:intron 45.0%
!!! TGCCTATTTTGAGTTCACGG+AGG - chr7_4:6790749-6790768 None:intergenic 45.0%
GTGAGAAAGGGAAAAACCAC+GGG + chr7_4:6790837-6790856 Msa1137800:intron 45.0%
!!! GAGGTTTTTTAAGAGGCCCA+AGG - chr7_4:6790865-6790884 None:intergenic 45.0%
ACAACAACTTCACCCTTAGG+TGG + chr7_4:6790906-6790925 Msa1137800:intron 45.0%
! GGCTTGCTCCTCCTATAAAT+AGG - chr7_4:6791106-6791125 None:intergenic 45.0%
ACATGTTGTGGTGCATGCAA+AGG - chr7_4:6791220-6791239 None:intergenic 45.0%
TGAGATGCATGGTGTACACA+TGG - chr7_4:6791260-6791279 None:intergenic 45.0%
AAGGTTGCATGTGAGATGCA+TGG - chr7_4:6791271-6791290 None:intergenic 45.0%
GTATGTTGGACATGTGGCAA+TGG + chr7_4:6791305-6791324 Msa1137800:intron 45.0%
!! TGAATACCGGTTGGCCTATT+TGG + chr7_4:6791541-6791560 Msa1137800:intron 45.0%
GACAATCCAAATAGGCCAAC+CGG - chr7_4:6791550-6791569 None:intergenic 45.0%
AATCCGTGACCTCAACAACT+TGG - chr7_4:6792237-6792256 None:intergenic 45.0%
! CTCGTAATCCAAACCCCTTT+TGG + chr7_4:6792356-6792375 Msa1137800:intron 45.0%
!! TCCAAACCCCTTTTGGAAAC+AGG + chr7_4:6792363-6792382 Msa1137800:intron 45.0%
TCCTGTTTCCAAAAGGGGTT+TGG - chr7_4:6792367-6792386 None:intergenic 45.0%
!! AAACCCCTTTTGGAAACAGG+AGG + chr7_4:6792366-6792385 Msa1137800:intron 45.0%
!! AACCCCTTTTGGAAACAGGA+GGG + chr7_4:6792367-6792386 Msa1137800:intron 45.0%
AACCCTCCTGTTTCCAAAAG+GGG - chr7_4:6792372-6792391 None:intergenic 45.0%
! CTTTTCCGTCAATTTCACGC+TGG - chr7_4:6792472-6792491 None:intergenic 45.0%
! TCAATTCGAGTTCGTTGCTC+AGG + chr7_4:6792499-6792518 Msa1137800:CDS 45.0%
AGAGCATGTCGAGTGTAGTT+TGG - chr7_4:6792527-6792546 None:intergenic 45.0%
CTCATTTGCTCCTGTAGTCA+AGG - chr7_4:6792661-6792680 None:intergenic 45.0%
CAGGAGCAAATGAGAGAAGA+TGG + chr7_4:6792667-6792686 Msa1137800:CDS 45.0%
GGAGCAAATGAGAGAAGATG+GGG + chr7_4:6792669-6792688 Msa1137800:CDS 45.0%
GAGCAAATGAGAGAAGATGG+GGG + chr7_4:6792670-6792689 Msa1137800:CDS 45.0%
!!! TTAAATTCTAAATTATTTTT+TGG + chr7_4:6792617-6792636 Msa1137800:intron 5.0%
! AAGGGATGCCATTGTTGGCT+TGG - chr7_4:6787674-6787693 None:intergenic 50.0%
GTCTGAAGGGATGCCATTGT+TGG - chr7_4:6787679-6787698 None:intergenic 50.0%
ACCACTGAGCTACTCCTTCA+GGG - chr7_4:6788535-6788554 None:intergenic 50.0%
TACCACTGAGCTACTCCTTC+AGG - chr7_4:6788536-6788555 None:intergenic 50.0%
TGGTATAGGTTCGACACCGA+AGG + chr7_4:6788551-6788570 Msa1137800:intron 50.0%
GGGTATATTCTCAGGACGTC+AGG - chr7_4:6789268-6789287 None:intergenic 50.0%
CGGCAACTGAGCCATATCAA+GGG - chr7_4:6789288-6789307 None:intergenic 50.0%
GTTGCCGCCGATAATAAGAC+AGG + chr7_4:6789301-6789320 Msa1137800:intron 50.0%
GACAGGATTTCAGCCAGTTG+TGG + chr7_4:6789318-6789337 Msa1137800:CDS 50.0%
! TGTCTACCCTTTTGGATGGC+AGG + chr7_4:6789363-6789382 Msa1137800:intron 50.0%
TGCTCACCTGCCATCCAAAA+GGG - chr7_4:6789372-6789391 None:intergenic 50.0%
ATGCTCACCTGCCATCCAAA+AGG - chr7_4:6789373-6789392 None:intergenic 50.0%
AAAGCTGATGTGGCTGACGT+TGG - chr7_4:6789660-6789679 None:intergenic 50.0%
ATTATGGTCGCTGATACCGC+AGG + chr7_4:6789712-6789731 Msa1137800:intron 50.0%
TTATGGTCGCTGATACCGCA+GGG + chr7_4:6789713-6789732 Msa1137800:intron 50.0%
GGGCAGGAAGTAGTGATTGA+AGG + chr7_4:6789879-6789898 Msa1137800:CDS 50.0%
!! GTTACGCTGACGTTTTCGAG+TGG - chr7_4:6789936-6789955 None:intergenic 50.0%
CGAACCAGACAGCAAATTGG+TGG + chr7_4:6790226-6790245 Msa1137800:intron 50.0%
!! AGTCCCACCAATTTGCTGTC+TGG - chr7_4:6790233-6790252 None:intergenic 50.0%
! GTGGTTCTTCTTGGTTCGAG+CGG - chr7_4:6790283-6790302 None:intergenic 50.0%
! ACTTGTTGAACCGGCCAGTT+TGG + chr7_4:6790349-6790368 Msa1137800:intron 50.0%
CCAGGACAAAGCCACATAGA+TGG - chr7_4:6790393-6790412 None:intergenic 50.0%
!! CCATCTATGTGGCTTTGTCC+TGG + chr7_4:6790390-6790409 Msa1137800:intron 50.0%
!! GTGGCTTTGTCCTGGAAGAA+TGG + chr7_4:6790398-6790417 Msa1137800:intron 50.0%
CACTACTGGCAAAGACCTTC+CGG - chr7_4:6790620-6790639 None:intergenic 50.0%
TGCTGCGTTCTGATAGGCTA+TGG + chr7_4:6790680-6790699 Msa1137800:intron 50.0%
ACGGAGGAGGGAAATTATGC+AGG - chr7_4:6790733-6790752 None:intergenic 50.0%
CATGCATTGCAAGGGACACT+TGG - chr7_4:6791182-6791201 None:intergenic 50.0%
GTGTGGTGCATGCATTGCAA+GGG - chr7_4:6791190-6791209 None:intergenic 50.0%
! CATGCAAAGGACACTTGGTG+TGG - chr7_4:6791207-6791226 None:intergenic 50.0%
TGGTGCATGCAAAGGACACT+TGG - chr7_4:6791212-6791231 None:intergenic 50.0%
TATGCGTTAACGCCCTTGAC+AGG + chr7_4:6791426-6791445 Msa1137800:intron 50.0%
TGTCGCCAGCGTGAAATTGA+CGG + chr7_4:6792464-6792483 Msa1137800:intron 50.0%
AATGGCAAACCCTTCTGCCT+AGG + chr7_4:6793109-6793128 Msa1137800:three_prime_UTR 50.0%
TCCCTGAAGGAGTAGCTCAG+TGG + chr7_4:6788531-6788550 Msa1137800:intron 55.0%
GCGGCAACTGAGCCATATCA+AGG - chr7_4:6789289-6789308 None:intergenic 55.0%
GTGGCAAGATGTGACTAGGG+TGG + chr7_4:6789564-6789583 Msa1137800:intron 55.0%
GCAAGATGTGACTAGGGTGG+TGG + chr7_4:6789567-6789586 Msa1137800:intron 55.0%
! AGATGTGACTAGGGTGGTGG+TGG + chr7_4:6789570-6789589 Msa1137800:intron 55.0%
TATGGTCGCTGATACCGCAG+GGG + chr7_4:6789714-6789733 Msa1137800:intron 55.0%
! TTTTGTCATGGGGAGTGGGC+AGG + chr7_4:6789863-6789882 Msa1137800:intron 55.0%
GGGTCACCTGAACAGGTTAG+AGG + chr7_4:6789993-6790012 Msa1137800:intron 55.0%
CCATGAATTGGCGCTGTCTG+TGG - chr7_4:6790325-6790344 None:intergenic 55.0%
CCACAGACAGCGCCAATTCA+TGG + chr7_4:6790322-6790341 Msa1137800:intron 55.0%
AAGTGTGGTAGGCCTGTGCT+GGG - chr7_4:6790578-6790597 None:intergenic 55.0%
AAAGTGTGGTAGGCCTGTGC+TGG - chr7_4:6790579-6790598 None:intergenic 55.0%
AACTCGCTCATACAGCCAGC+GGG - chr7_4:6790651-6790670 None:intergenic 55.0%
CAACTCGCTCATACAGCCAG+CGG - chr7_4:6790652-6790671 None:intergenic 55.0%
CTATCAGAACGCAGCAGCGA+GGG - chr7_4:6790676-6790695 None:intergenic 55.0%
GGAAAAACCACGGGACCCTT+GGG + chr7_4:6790846-6790865 Msa1137800:intron 55.0%
GGTGTGGTGCATGCATTGCA+AGG - chr7_4:6791191-6791210 None:intergenic 55.0%
GTTGGACATGTGGCAATGGC+TGG + chr7_4:6791309-6791328 Msa1137800:intron 55.0%
TTCCGCTGTGCTGAGATGTG+AGG + chr7_4:6791377-6791396 Msa1137800:intron 55.0%
CACCTCACATCTCAGCACAG+CGG - chr7_4:6791382-6791401 None:intergenic 55.0%
TGTGCTGAGATGTGAGGTGC+AGG + chr7_4:6791383-6791402 Msa1137800:intron 55.0%
!! AAGGGCGTTAACGCATACCC+CGG - chr7_4:6791423-6791442 None:intergenic 55.0%
!! GGTTCTGGAGTGCCTGTCAA+GGG - chr7_4:6791441-6791460 None:intergenic 55.0%
!! TCATGAGTGTTGGCGGGTTC+TGG - chr7_4:6791456-6791475 None:intergenic 55.0%
TTTCACGCTGGCGACACAGA+TGG - chr7_4:6792460-6792479 None:intergenic 55.0%
TAAACTCGGGGCCAATTCCG+AGG + chr7_4:6792924-6792943 Msa1137800:intron 55.0%
CCAATTCCACCGCTCACTTG+CGG + chr7_4:6792966-6792985 Msa1137800:intron 55.0%
CAATTCCACCGCTCACTTGC+GGG + chr7_4:6792967-6792986 Msa1137800:intron 55.0%
AATTCCACCGCTCACTTGCG+GGG + chr7_4:6792968-6792987 Msa1137800:intron 55.0%
AGTGTGGTAGGCCTGTGCTG+GGG - chr7_4:6790577-6790596 None:intergenic 60.0%
CCACAGGCGCAAAGTGTGGT+AGG - chr7_4:6790589-6790608 None:intergenic 60.0%
CCTACCACACTTTGCGCCTG+TGG + chr7_4:6790586-6790605 Msa1137800:intron 60.0%
AACGCCACAGGCGCAAAGTG+TGG - chr7_4:6790593-6790612 None:intergenic 60.0%
ACTCGCTCATACAGCCAGCG+GGG - chr7_4:6790650-6790669 None:intergenic 60.0%
CCTATCAGAACGCAGCAGCG+AGG - chr7_4:6790677-6790696 None:intergenic 60.0%
CCTCGCTGCTGCGTTCTGAT+AGG + chr7_4:6790674-6790693 Msa1137800:intron 60.0%
GGGAAAAACCACGGGACCCT+TGG + chr7_4:6790845-6790864 Msa1137800:intron 60.0%
GCTGAGATGTGAGGTGCAGG+TGG + chr7_4:6791386-6791405 Msa1137800:intron 60.0%
! GCAGGTGGTGATGATCACCC+CGG + chr7_4:6791401-6791420 Msa1137800:intron 60.0%
! CAGGTGGTGATGATCACCCC+GGG + chr7_4:6791402-6791421 Msa1137800:intron 60.0%
! AGGTGGTGATGATCACCCCG+GGG + chr7_4:6791403-6791422 Msa1137800:intron 60.0%
! AGGGCGTTAACGCATACCCC+GGG - chr7_4:6791422-6791441 None:intergenic 60.0%
!! GGGTTCTGGAGTGCCTGTCA+AGG - chr7_4:6791442-6791461 None:intergenic 60.0%
CCGCAAGTGAGCGGTGGAAT+TGG - chr7_4:6792969-6792988 None:intergenic 60.0%
ATTCCACCGCTCACTTGCGG+GGG + chr7_4:6792969-6792988 Msa1137800:intron 60.0%
! CGGGGGCCCATTTAAAGCCA+GGG + chr7_4:6792986-6793005 Msa1137800:intron 60.0%
CTGCTATGCTCCCCCAGCAC+AGG + chr7_4:6790563-6790582 Msa1137800:intron 65.0%
GTGTGGTAGGCCTGTGCTGG+GGG - chr7_4:6790576-6790595 None:intergenic 65.0%
! TGCGCCTGTGGCGTTTTCGC+CGG + chr7_4:6790598-6790617 Msa1137800:intron 65.0%
CCTTCCGGCGAAAACGCCAC+AGG - chr7_4:6790605-6790624 None:intergenic 65.0%
! CCTGTGGCGTTTTCGCCGGA+AGG + chr7_4:6790602-6790621 Msa1137800:intron 65.0%
AGCGGGGAGGATGGCACTAC+TGG - chr7_4:6790634-6790653 None:intergenic 65.0%
AGTAGTGCCATCCTCCCCGC+TGG + chr7_4:6790633-6790652 Msa1137800:intron 65.0%
CATACAGCCAGCGGGGAGGA+TGG - chr7_4:6790643-6790662 None:intergenic 65.0%
TAAGAGGCCCAAGGGTCCCG+TGG - chr7_4:6790856-6790875 None:intergenic 65.0%
GGGCGTTAACGCATACCCCG+GGG - chr7_4:6791421-6791440 None:intergenic 65.0%
AATGGGCCCCCGCAAGTGAG+CGG - chr7_4:6792978-6792997 None:intergenic 65.0%
! GCGGGGGCCCATTTAAAGCC+AGG + chr7_4:6792985-6793004 Msa1137800:intron 65.0%
CGCTCATACAGCCAGCGGGG+AGG - chr7_4:6790647-6790666 None:intergenic 70.0%
! GGGCCCCCGCAAGTGAGCGG+TGG - chr7_4:6792975-6792994 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 6787555 6793182 6787555 ID=Msa1137800;Name=Msa1137800
chr7_4 mRNA 6787555 6793182 6787555 ID=Msa1137800-mRNA-1;Parent=Msa1137800;Name=Msa1137800-mRNA-1;_AED=0.08;_eAED=0.08;_QI=127|0.75|0.66|1|0.62|0.44|9|245|217
chr7_4 exon 6787555 6787744 6787555 ID=Msa1137800-mRNA-1:exon:1895;Parent=Msa1137800-mRNA-1
chr7_4 exon 6787827 6787923 6787827 ID=Msa1137800-mRNA-1:exon:1896;Parent=Msa1137800-mRNA-1
chr7_4 exon 6789127 6789207 6789127 ID=Msa1137800-mRNA-1:exon:1897;Parent=Msa1137800-mRNA-1
chr7_4 exon 6789302 6789359 6789302 ID=Msa1137800-mRNA-1:exon:1898;Parent=Msa1137800-mRNA-1
chr7_4 exon 6789878 6790007 6789878 ID=Msa1137800-mRNA-1:exon:1899;Parent=Msa1137800-mRNA-1
chr7_4 exon 6790096 6790119 6790096 ID=Msa1137800-mRNA-1:exon:1900;Parent=Msa1137800-mRNA-1
chr7_4 exon 6792473 6792569 6792473 ID=Msa1137800-mRNA-1:exon:1901;Parent=Msa1137800-mRNA-1
chr7_4 exon 6792646 6792913 6792646 ID=Msa1137800-mRNA-1:exon:1902;Parent=Msa1137800-mRNA-1
chr7_4 exon 6793102 6793182 6793102 ID=Msa1137800-mRNA-1:exon:1903;Parent=Msa1137800-mRNA-1
chr7_4 five_prime_UTR 6787555 6787681 6787555 ID=Msa1137800-mRNA-1:five_prime_utr;Parent=Msa1137800-mRNA-1
chr7_4 CDS 6787682 6787744 6787682 ID=Msa1137800-mRNA-1:cds;Parent=Msa1137800-mRNA-1
chr7_4 CDS 6787827 6787923 6787827 ID=Msa1137800-mRNA-1:cds;Parent=Msa1137800-mRNA-1
chr7_4 CDS 6789127 6789207 6789127 ID=Msa1137800-mRNA-1:cds;Parent=Msa1137800-mRNA-1
chr7_4 CDS 6789302 6789359 6789302 ID=Msa1137800-mRNA-1:cds;Parent=Msa1137800-mRNA-1
chr7_4 CDS 6789878 6790007 6789878 ID=Msa1137800-mRNA-1:cds;Parent=Msa1137800-mRNA-1
chr7_4 CDS 6790096 6790119 6790096 ID=Msa1137800-mRNA-1:cds;Parent=Msa1137800-mRNA-1
chr7_4 CDS 6792473 6792569 6792473 ID=Msa1137800-mRNA-1:cds;Parent=Msa1137800-mRNA-1
chr7_4 CDS 6792646 6792749 6792646 ID=Msa1137800-mRNA-1:cds;Parent=Msa1137800-mRNA-1
chr7_4 three_prime_UTR 6792750 6792913 6792750 ID=Msa1137800-mRNA-1:three_prime_utr;Parent=Msa1137800-mRNA-1
chr7_4 three_prime_UTR 6793102 6793182 6793102 ID=Msa1137800-mRNA-1:three_prime_utr;Parent=Msa1137800-mRNA-1
Gene Sequence

>Msa1137800

ATGGCATCCCTTCAGACTTCACCTACACTTCACAGAACTCTCTTTCAAAACTCTTTCCCTCAGAAGCATGGTGGTAGTAGTAGTAGTAGTACTTTTCGTAGAAGAGAAGGCATTTCTTTCATTGTCAAAGCTGAACAAGAACTGTCATCTTCTTCAACAGATATATCAGGAAGGCGCCAAGCAATTGCCATTGCAGCTACTGCACCATTAGTTTTTCTGTTCAACCAACCCTCAATTTCTTTTGCCGCCGATAATAAGACAGGATTTCAGCCAGTTGTGGATAGGAAAGATGGATATCATGGGCAGGAAGTAGTGATTGAAGGTCAAGATAAGGTGTTCAAAGATGTTATCGAACCACTCGAAAACGTCAGCGTAACAATGATCCCAACAAGCAAACAGGATATTAAAGAATTTGGGTCACCTGAACAGGTTGCTGCAACTCTGATAAAAAAGCGTGAAATTGACGGAAAAGCATATTATCAATTCGAGTTCGTTGCTCAGGCTCCAAACTACACTCGACATGCTCTCAGCGCAGTCTCCATTGGCAATGGTAAGTTTTACACCTTGACTACAGGAGCAAATGAGAGAAGATGGGGGAAGATGAAAGACAGATTGAACACCATAGTAGAATCCTTCCAACTATTCAAAGTTTGA

Protein sequence

>Msa1137800

MASLQTSPTLHRTLFQNSFPQKHGGSSSSSTFRRREGISFIVKAEQELSSSSTDISGRRQAIAIAATAPLVFLFNQPSISFAADNKTGFQPVVDRKDGYHGQEVVIEGQDKVFKDVIEPLENVSVTMIPTSKQDIKEFGSPEQVAATLIKKREIDGKAYYQFEFVAQAPNYTRHALSAVSIGNGKFYTLTTGANERRWGKMKDRLNTIVESFQLFKV*