AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0453610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0453610 MtrunA17_Chr3g0099621 99.180 244 2 0 1 244 1 244 0.0 505
Msa0453610 MtrunA17_Chr2g0288961 65.164 244 83 1 1 244 1 242 1.28e-119 340
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0453610 AT4G26860.1 75.720 243 58 1 1 243 1 242 9.78e-140 392
Msa0453610 AT4G26860.2 72.727 253 58 2 1 243 1 252 1.52e-136 384
Msa0453610 AT1G11930.2 73.333 240 62 1 6 243 16 255 8.12e-130 367
Msa0453610 AT1G11930.1 72.727 242 62 2 6 243 16 257 7.59e-128 362

Find 97 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATGCTTGTTCATGCTATT+TGG 0.154174 3_3:-44180206 Msa0453610:three_prime_UTR
CCCTCAACCATGGCCAAATT+TGG 0.192964 3_3:+44183415 None:intergenic
CATGGAAATGGGTTTGGTTT+TGG 0.200720 3_3:+44185032 None:intergenic
AGAATTGGGTCAACAATATT+TGG 0.205222 3_3:-44180461 Msa0453610:CDS
TGCAGGCGGAGTTCCAAATT+TGG 0.235525 3_3:-44183428 Msa0453610:intron
GAGCTTTCTCAACGATTTCT+TGG 0.267769 3_3:+44184959 None:intergenic
CTCAACTCCGCAGAACTTTC+GGG 0.271171 3_3:-44181876 Msa0453610:intron
GACGCTGGTCATAGAGTCTT+TGG 0.279588 3_3:-44184994 Msa0453610:CDS
AAGCATACTCAGAAGTGTTT+TGG 0.293617 3_3:+44183984 None:intergenic
CTTCAGTCCTGCAATTTGAT+AGG 0.293960 3_3:+44181662 None:intergenic
CCTCAACTCCGCAGAACTTT+CGG 0.295923 3_3:-44181877 Msa0453610:CDS
ACAAGCAACACAAAATAAAA+TGG 0.301129 3_3:+44185229 None:intergenic
TATCTTCAATGACTATTTGC+AGG 0.301890 3_3:-44180066 Msa0453610:three_prime_UTR
CGTGATTATTCTTAATAATC+TGG 0.302849 3_3:-44180032 Msa0453610:three_prime_UTR
CGGATCTTTCCGCCGCTTGT+TGG 0.314049 3_3:+44185091 None:intergenic
AACTCGATCGGGTTTGGTTC+CGG 0.318941 3_3:+44185071 None:intergenic
AATCATGTCTTATCTACTTT+AGG 0.323770 3_3:+44180381 None:intergenic
TATGGCACAGATCTCTTAAA+TGG 0.325301 3_3:-44180354 Msa0453610:intron
AAGAAATCGTCTGAGGGTTT+TGG 0.327681 3_3:-44183081 Msa0453610:CDS
GGTAGTACTAATGTGAGAAT+TGG 0.335377 3_3:-44180476 Msa0453610:CDS
GATATTCAGTGGCACTTCAT+TGG 0.337723 3_3:-44184027 Msa0453610:CDS
GGAAGGATCAACACCAGATT+TGG 0.364216 3_3:+44181988 None:intergenic
AAGCCAGAGAATTCTAAGTT+TGG 0.370526 3_3:+44181926 None:intergenic
TCCAAATTTGGCCATGGTTG+AGG 0.375364 3_3:-44183416 Msa0453610:CDS
GAACCAAACCCGATCGAGTT+CGG 0.381961 3_3:-44185068 Msa0453610:CDS
CCAAATTTGGCCATGGTTGA+GGG 0.385322 3_3:-44183415 Msa0453610:CDS
AACCAAACCCGATCGAGTTC+GGG 0.397828 3_3:-44185067 Msa0453610:CDS
TTGTTTGTTGCAGCCAAATC+TGG 0.399983 3_3:-44182001 Msa0453610:intron
CCCTCAGACGATTTCTTCCC+AGG 0.401232 3_3:+44183087 None:intergenic
TGTAGACCCTATCAAATTGC+AGG 0.402948 3_3:-44181669 Msa0453610:intron
GACCCGAACTCGATCGGGTT+TGG 0.405954 3_3:+44185065 None:intergenic
TTTATAAATAACATCCAGTT+AGG 0.406039 3_3:+44179977 None:intergenic
GCGAATCATGGAAATGGGTT+TGG 0.406661 3_3:+44185026 None:intergenic
AGTTTGCAAGGCACTTGAAA+TGG 0.408160 3_3:-44181641 Msa0453610:CDS
ACGCTGGTCATAGAGTCTTT+GGG 0.415706 3_3:-44184993 Msa0453610:CDS
GAGTTGGCGAATCATGGAAA+TGG 0.416981 3_3:+44185020 None:intergenic
ATATTCAGTGGCACTTCATT+GGG 0.425650 3_3:-44184026 Msa0453610:CDS
GGAGCAATGTGAACTGTCAA+TGG 0.426611 3_3:-44181614 Msa0453610:CDS
TTTGGCCATGGTTGAGGGCG+TGG 0.429084 3_3:-44183410 Msa0453610:CDS
CAACAAGCGGCGGAAAGATC+CGG 0.431700 3_3:-44185090 Msa0453610:CDS
TGACCGTATGGTTTCAAACC+TGG 0.441164 3_3:-44183105 Msa0453610:CDS
GGCAAATAACCTTGACCGTA+TGG 0.454246 3_3:-44183117 Msa0453610:CDS
TGTCCAAACTTAGAATTCTC+TGG 0.463779 3_3:-44181929 Msa0453610:CDS
GTCATAGAGTTGGCGAATCA+TGG 0.468873 3_3:+44185014 None:intergenic
TTCTCTGGCTTAATGACAAT+AGG 0.469053 3_3:-44181914 Msa0453610:CDS
AGATGGTCGCTGTATAATAA+TGG 0.469378 3_3:+44180133 None:intergenic
AGTTGGCGAATCATGGAAAT+GGG 0.484870 3_3:+44185021 None:intergenic
GAACTGTCAATGGGCATGTC+TGG 0.485338 3_3:-44181604 Msa0453610:CDS
CATGTCTTATCTACTTTAGG+AGG 0.487980 3_3:+44180384 None:intergenic
GTAGTACTAATGTGAGAATT+GGG 0.489318 3_3:-44180475 Msa0453610:CDS
CGGAGTTCCAAATTTGGCCA+TGG 0.493079 3_3:-44183422 Msa0453610:CDS
TTCAGTCCTGCAATTTGATA+GGG 0.493507 3_3:+44181663 None:intergenic
GATAAGACATGATTACACTA+TGG 0.495303 3_3:-44180372 Msa0453610:three_prime_UTR
TGCTATTTGGAAAGAGGGAA+AGG 0.499695 3_3:-44180193 Msa0453610:three_prime_UTR
GAACTTACATTCTTCTCCAC+TGG 0.501852 3_3:+44183046 None:intergenic
GCAACGACCCGAACTCGATC+GGG 0.502938 3_3:+44185060 None:intergenic
GGTGGTGTGTTTGTCTGTTG+AGG 0.506548 3_3:+44185199 None:intergenic
TGCGGAGTTGAGGTATAGTC+TGG 0.506981 3_3:+44181887 None:intergenic
GTTCATGCTATTTGGAAAGA+GGG 0.509415 3_3:-44180198 Msa0453610:three_prime_UTR
ACCAATGACATCTCCGGTGA+TGG 0.514487 3_3:-44185160 Msa0453610:exon
TGTTCATGCTATTTGGAAAG+AGG 0.518238 3_3:-44180199 Msa0453610:three_prime_UTR
GCAGCTGCTTCCGCCATCAC+CGG 0.520200 3_3:+44185147 None:intergenic
AATCGTTGAGAAAGCTCCTC+AGG 0.525653 3_3:-44184953 Msa0453610:intron
TTTCCGCCGCTTGTTGGACA+CGG 0.529093 3_3:+44185097 None:intergenic
TGCAACGACCCGAACTCGAT+CGG 0.532215 3_3:+44185059 None:intergenic
TTCCCAGGTTTGAAACCATA+CGG 0.534502 3_3:+44183102 None:intergenic
TCTTCCACCAATGACATCTC+CGG 0.537309 3_3:-44185166 Msa0453610:intron
GCCATCACCGGAGATGTCAT+TGG 0.538406 3_3:+44185159 None:intergenic
GGTGTGTTTGTCTGTTGAGG+TGG 0.538756 3_3:+44185202 None:intergenic
ATCTTCAATGACTATTTGCA+GGG 0.545360 3_3:-44180065 Msa0453610:three_prime_UTR
CCGAAAGTTCTGCGGAGTTG+AGG 0.549382 3_3:+44181877 None:intergenic
CGCTGGTCATAGAGTCTTTG+GGG 0.550567 3_3:-44184992 Msa0453610:CDS
GAGCAATGTGAACTGTCAAT+GGG 0.553747 3_3:-44181613 Msa0453610:CDS
GACCGTATGGTTTCAAACCT+GGG 0.557992 3_3:-44183104 Msa0453610:CDS
ATAAATAACATCCAGTTAGG+TGG 0.569714 3_3:+44179980 None:intergenic
CAAGGCACTTGAAATGGACG+AGG 0.572444 3_3:-44181635 Msa0453610:CDS
ATTCGCCAACTCTATGACGC+TGG 0.577025 3_3:-44185009 Msa0453610:CDS
GGTTTGAAACCATACGGTCA+AGG 0.578649 3_3:+44183108 None:intergenic
TTGCAGGACTGAAGTTTGCA+AGG 0.579031 3_3:-44181653 Msa0453610:CDS
TACTGATCGGAAAGCTAAGA+CGG 0.579948 3_3:+44185125 None:intergenic
TATGACCAGCGTCATAGAGT+TGG 0.589921 3_3:+44185004 None:intergenic
GCAAGATCAACACAATCGGA+AGG 0.593111 3_3:+44181971 None:intergenic
CCTGGGAAGAAATCGTCTGA+GGG 0.593514 3_3:-44183087 Msa0453610:CDS
GATAAACAATATTCAAACAC+TGG 0.594099 3_3:+44180085 None:intergenic
ACCTGGGAAGAAATCGTCTG+AGG 0.602661 3_3:-44183088 Msa0453610:CDS
CAGATTATTAAGAATAATCA+CGG 0.604482 3_3:+44180033 None:intergenic
ATTGTCCACGCCCTCAACCA+TGG 0.606710 3_3:+44183405 None:intergenic
GCTATTTGGAAAGAGGGAAA+GGG 0.609438 3_3:-44180192 Msa0453610:three_prime_UTR
AATGACATCTCCGGTGATGG+CGG 0.614760 3_3:-44185157 Msa0453610:CDS
TGAGGGCGTGGACAATCAGA+AGG 0.626680 3_3:-44183398 Msa0453610:intron
AAGTGCCACTGAATATCTTG+CGG 0.648199 3_3:+44184033 None:intergenic
AGCTTCCGCAAGATATTCAG+TGG 0.656965 3_3:-44184038 Msa0453610:CDS
GGACACGGAGCATTACTGAT+CGG 0.662757 3_3:+44185112 None:intergenic
AATGCTCCGTGTCCAACAAG+CGG 0.669810 3_3:-44185103 Msa0453610:CDS
TTGGTGCAAGTAAATACCAG+TGG 0.675365 3_3:-44183062 Msa0453610:CDS
GCTCCGTGTCCAACAAGCGG+CGG 0.683370 3_3:-44185100 Msa0453610:CDS
ACTATTACCCGAAAGTTCTG+CGG 0.684747 3_3:+44181869 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCAAAAAAAAAAAAAAAC+AGG + chr3_3:44180417-44180436 None:intergenic 10.0%
!!! GTTTTTTTTTTTTTTTGAAA+AGG - chr3_3:44180417-44180436 Msa0453610:exon 10.0%
!!! TTTATCAATTTCTTAATTTT+AGG - chr3_3:44180964-44180983 Msa0453610:intron 10.0%
!!! TTATCAATTTCTTAATTTTA+GGG - chr3_3:44180965-44180984 Msa0453610:intron 10.0%
!!! TTTTATTATATCAATTACAA+TGG + chr3_3:44184885-44184904 None:intergenic 10.0%
!!! TTTACAAATAATTTTGAAGT+AGG - chr3_3:44180643-44180662 Msa0453610:intron 15.0%
!!! CATTTATTCTAAGTTATTTT+AGG + chr3_3:44181531-44181550 None:intergenic 15.0%
!!! ATTATTTTTTATCATCTGTT+TGG - chr3_3:44182727-44182746 Msa0453610:intron 15.0%
!! TTTAATTATATTCTGACTTA+TGG + chr3_3:44182769-44182788 None:intergenic 15.0%
!! AATAGAAAAGTAAAACAATA+TGG + chr3_3:44183064-44183083 None:intergenic 15.0%
!!! TTTACTTTTCTATTATGTAT+TGG - chr3_3:44183070-44183089 Msa0453610:CDS 15.0%
!! TTTATATATTTAGACATGTA+AGG + chr3_3:44183157-44183176 None:intergenic 15.0%
!!! ATTTTTTAGAATCATTTCAT+TGG - chr3_3:44183431-44183450 Msa0453610:intron 15.0%
!!! TACAATCTTTTTTAGAATTA+GGG + chr3_3:44183954-44183973 None:intergenic 15.0%
!!! AAATTTGAAATGCAATATGA+AGG + chr3_3:44180291-44180310 None:intergenic 20.0%
!!! TAATTTGAAATATTCACCAA+TGG - chr3_3:44180891-44180910 Msa0453610:intron 20.0%
!!! AAAGTTCTAAGAATTTTGTT+TGG - chr3_3:44181125-44181144 Msa0453610:intron 20.0%
!!! AAGTTCTAAGAATTTTGTTT+GGG - chr3_3:44181126-44181145 Msa0453610:intron 20.0%
!! AACATCCTTCATATTTATAA+AGG - chr3_3:44181664-44181683 Msa0453610:CDS 20.0%
!! TAACTCCTTTATAAATATGA+AGG + chr3_3:44181672-44181691 None:intergenic 20.0%
!! TATTTATAAAGGAGTTATCT+TGG - chr3_3:44181675-44181694 Msa0453610:intron 20.0%
!! TTCTTTATCATCCTTATATT+AGG - chr3_3:44181720-44181739 Msa0453610:intron 20.0%
!!! GAGAGATTTATCTTTTTTTT+AGG - chr3_3:44182489-44182508 Msa0453610:intron 20.0%
!! CTTGAAATATCTGATAATTA+TGG - chr3_3:44183704-44183723 Msa0453610:intron 20.0%
!!! CTACAATCTTTTTTAGAATT+AGG + chr3_3:44183955-44183974 None:intergenic 20.0%
!! AACAAAATTTGACAACAATT+TGG - chr3_3:44184093-44184112 Msa0453610:intron 20.0%
!! TAACTAACCATATATTCAAA+CGG - chr3_3:44184423-44184442 Msa0453610:intron 20.0%
!! AAAATCAACAACAATTTGAA+TGG + chr3_3:44184455-44184474 None:intergenic 20.0%
!! CAGATTATTAAGAATAATCA+CGG + chr3_3:44185168-44185187 None:intergenic 20.0%
!! TTTATAAATAACATCCAGTT+AGG + chr3_3:44185224-44185243 None:intergenic 20.0%
! ACAAGCAACACAAAATAAAA+TGG + chr3_3:44179972-44179991 None:intergenic 25.0%
!! AAAAAAAGTTTTCATACCTG+AGG + chr3_3:44180264-44180283 None:intergenic 25.0%
! ACATAATTCAGTGTAATAAC+AGG + chr3_3:44180451-44180470 None:intergenic 25.0%
! TCTCAAATTATTATCTGTGT+CGG - chr3_3:44180475-44180494 Msa0453610:CDS 25.0%
! CATATTATCATATGAATGCT+TGG - chr3_3:44180510-44180529 Msa0453610:intron 25.0%
! GGTAAAAATAGTAAGATATG+AGG - chr3_3:44180609-44180628 Msa0453610:intron 25.0%
!!! AGTTCTAAGAATTTTGTTTG+GGG - chr3_3:44181127-44181146 Msa0453610:intron 25.0%
!! ACTAAACTCAAAGTATTCTA+AGG + chr3_3:44181375-44181394 None:intergenic 25.0%
!! AGAAGTTGAAATAAGCTTTT+GGG + chr3_3:44181459-44181478 None:intergenic 25.0%
!! AAGAAGTTGAAATAAGCTTT+TGG + chr3_3:44181460-44181479 None:intergenic 25.0%
! AGTATAAAAATCAGAAACAG+TGG + chr3_3:44181631-44181650 None:intergenic 25.0%
! GTTAACGTTAACCTAATATA+AGG + chr3_3:44181734-44181753 None:intergenic 25.0%
!!! TATGCTTTAATTTGATCTTC+AGG - chr3_3:44181889-44181908 Msa0453610:CDS 25.0%
! GTTGTGCTCAATTATAATTT+AGG - chr3_3:44181911-44181930 Msa0453610:CDS 25.0%
!! ATTCCTTTTAGATAACTAGT+TGG - chr3_3:44181954-44181973 Msa0453610:CDS 25.0%
! TAAAGGTTTGTCAAATGATA+TGG + chr3_3:44182030-44182049 None:intergenic 25.0%
!! CTCTAAATTCTTGTTGTATT+TGG - chr3_3:44182194-44182213 Msa0453610:intron 25.0%
! TTGTATTTGGTTATTTACGA+GGG - chr3_3:44182207-44182226 Msa0453610:intron 25.0%
! GAGTGATGTTAGTAAAATAT+AGG - chr3_3:44182334-44182353 Msa0453610:intron 25.0%
! GATGTTAGTAAAATATAGGA+AGG - chr3_3:44182338-44182357 Msa0453610:intron 25.0%
! TTAGTAAAATATAGGAAGGA+GGG - chr3_3:44182342-44182361 Msa0453610:intron 25.0%
! GTGACCAATTATGTTATAAA+TGG - chr3_3:44182407-44182426 Msa0453610:intron 25.0%
! CACACCATTTATAACATAAT+TGG + chr3_3:44182414-44182433 None:intergenic 25.0%
!! ATATATTCTCCTCTTATTTG+AGG - chr3_3:44182578-44182597 Msa0453610:intron 25.0%
! ATTTGTCTATCAAAAAAGAG+AGG + chr3_3:44182799-44182818 None:intergenic 25.0%
!! AGTGATTATGTTAGTTTCTA+AGG - chr3_3:44182830-44182849 Msa0453610:intron 25.0%
!!! TAGTTATATTCTAAAGCATG+TGG - chr3_3:44183348-44183367 Msa0453610:intron 25.0%
! ATAATATGAACTCAAGAAAC+AGG + chr3_3:44183391-44183410 None:intergenic 25.0%
!! ATCTGATAATTATGGTCTTA+CGG - chr3_3:44183712-44183731 Msa0453610:intron 25.0%
! TTAGTTATGTCATGATAGAT+CGG - chr3_3:44183874-44183893 Msa0453610:intron 25.0%
! AAATTTGACAACAATTTGGA+TGG - chr3_3:44184097-44184116 Msa0453610:intron 25.0%
! GTTAATGCAATTCAAATACA+TGG - chr3_3:44184119-44184138 Msa0453610:intron 25.0%
! GGTTAATTACATTAAGTAGA+TGG - chr3_3:44184140-44184159 Msa0453610:intron 25.0%
! AATTCAACAATTGTGTTATG+TGG + chr3_3:44184204-44184223 None:intergenic 25.0%
! GTTAATGACATTCAAAATTG+TGG + chr3_3:44184229-44184248 None:intergenic 25.0%
!! TGTCATTAACCACAAATTTT+AGG - chr3_3:44184239-44184258 Msa0453610:intron 25.0%
! AAATCTACACCTAAAATTTG+TGG + chr3_3:44184251-44184270 None:intergenic 25.0%
!! TATGGTTAGTTATGTTAAGT+GGG + chr3_3:44184415-44184434 None:intergenic 25.0%
!! ATATGGTTAGTTATGTTAAG+TGG + chr3_3:44184416-44184435 None:intergenic 25.0%
! GATTCATGAATCATATCTAA+AGG + chr3_3:44184568-44184587 None:intergenic 25.0%
! AATCATGTCTTATCTACTTT+AGG + chr3_3:44184820-44184839 None:intergenic 25.0%
! GATAAACAATATTCAAACAC+TGG + chr3_3:44185116-44185135 None:intergenic 25.0%
! CGTGATTATTCTTAATAATC+TGG - chr3_3:44185166-44185185 Msa0453610:intron 25.0%
!! TCTTTCAGCAATATTTTGAG+TGG - chr3_3:44180588-44180607 Msa0453610:intron 30.0%
AATTAACGAAGCTCTACATA+CGG + chr3_3:44180876-44180895 None:intergenic 30.0%
TCGCTAGCAAATATAATTTC+AGG - chr3_3:44180994-44181013 Msa0453610:intron 30.0%
CGCTAGCAAATATAATTTCA+GGG - chr3_3:44180995-44181014 Msa0453610:intron 30.0%
TAATTTCAGGGACAAATTTG+AGG - chr3_3:44181007-44181026 Msa0453610:intron 30.0%
!!! TGTGTTATTTTTGTTCTGTC+TGG - chr3_3:44181098-44181117 Msa0453610:intron 30.0%
!! AAGAATTTTGTTTGGGGATT+TGG - chr3_3:44181133-44181152 Msa0453610:intron 30.0%
!!! GCTTTTTTTGTAGTTTCACT+AGG - chr3_3:44181330-44181349 Msa0453610:intron 30.0%
! AAACATCATAGAGTATCTCA+TGG - chr3_3:44181485-44181504 Msa0453610:intron 30.0%
ACTCCAACTAGTTATCTAAA+AGG + chr3_3:44181960-44181979 None:intergenic 30.0%
GAAGTACAAGAACACATTAA+AGG + chr3_3:44182047-44182066 None:intergenic 30.0%
GTTGTATTTGGTTATTTACG+AGG - chr3_3:44182206-44182225 Msa0453610:intron 30.0%
ATTTGCCCACATTCAAATAT+GGG + chr3_3:44182277-44182296 None:intergenic 30.0%
TATTTGCCCACATTCAAATA+TGG + chr3_3:44182278-44182297 None:intergenic 30.0%
ATATTTGAATGTGGGCAAAT+AGG - chr3_3:44182277-44182296 Msa0453610:intron 30.0%
GTTAGTAAAATATAGGAAGG+AGG - chr3_3:44182341-44182360 Msa0453610:intron 30.0%
TATAAATGGTGTGAAAAGAG+AGG - chr3_3:44182421-44182440 Msa0453610:intron 30.0%
ATAAATGGTGTGAAAAGAGA+GGG - chr3_3:44182422-44182441 Msa0453610:intron 30.0%
! CTTTTCTATTAGAGCTGTAA+AGG - chr3_3:44182457-44182476 Msa0453610:intron 30.0%
AGTCACAACATACACAATAA+GGG + chr3_3:44182633-44182652 None:intergenic 30.0%
AAGTCACAACATACACAATA+AGG + chr3_3:44182634-44182653 None:intergenic 30.0%
TTCCTGACACTAAATTAAGA+AGG + chr3_3:44182707-44182726 None:intergenic 30.0%
!! TCAGTAACTTTGGAATAAGA+GGG + chr3_3:44182940-44182959 None:intergenic 30.0%
ATTCATTGCAGATAATGACA+TGG - chr3_3:44182980-44182999 Msa0453610:intron 30.0%
TAGTTCAACAGCTATTAGAT+TGG - chr3_3:44183023-44183042 Msa0453610:intron 30.0%
! TTTTGCAAGATCAACACAAT+CGG + chr3_3:44183234-44183253 None:intergenic 30.0%
! AATGAATTGACTCCTAATAC+TGG - chr3_3:44183756-44183775 Msa0453610:intron 30.0%
TGCACAAACTACATAAAACA+AGG + chr3_3:44183980-44183999 None:intergenic 30.0%
! GTGTGTTTTACTTTCCTTAT+TGG + chr3_3:44184028-44184047 None:intergenic 30.0%
!!! CTGGGTTATTTTAACACAAT+GGG - chr3_3:44184068-44184087 Msa0453610:intron 30.0%
GTGTTATGTGGATGATTAAT+GGG + chr3_3:44184192-44184211 None:intergenic 30.0%
TGTGTTATGTGGATGATTAA+TGG + chr3_3:44184193-44184212 None:intergenic 30.0%
GTTAACGAAGTTCAAAATTG+TGG - chr3_3:44184331-44184350 Msa0453610:intron 30.0%
GGTGGTTAATGAATATAACA+GGG + chr3_3:44184394-44184413 None:intergenic 30.0%
! GTTAATGCCGTTTGAATATA+TGG + chr3_3:44184433-44184452 None:intergenic 30.0%
TTTCTCATCTAATTGTTCAG+AGG - chr3_3:44184491-44184510 Msa0453610:intron 30.0%
GACTAACATATATAAGACCA+AGG - chr3_3:44184539-44184558 Msa0453610:intron 30.0%
ATCATATCTAAAGGTTTCCT+TGG + chr3_3:44184559-44184578 None:intergenic 30.0%
GTAGTACTAATGTGAGAATT+GGG - chr3_3:44184723-44184742 Msa0453610:intron 30.0%
AGAATTGGGTCAACAATATT+TGG - chr3_3:44184737-44184756 Msa0453610:intron 30.0%
!!! TGCTTTTTTGCATATTCTCT+TGG + chr3_3:44184764-44184783 None:intergenic 30.0%
GATAAGACATGATTACACTA+TGG - chr3_3:44184826-44184845 Msa0453610:intron 30.0%
! GTTAAGTTTCTTTTTGCAGA+TGG + chr3_3:44185085-44185104 None:intergenic 30.0%
TATCTTCAATGACTATTTGC+AGG - chr3_3:44185132-44185151 Msa0453610:CDS 30.0%
ATCTTCAATGACTATTTGCA+GGG - chr3_3:44185133-44185152 Msa0453610:CDS 30.0%
!!! TTATTTTTTTGCCACCTAAC+TGG - chr3_3:44185207-44185226 Msa0453610:five_prime_UTR 30.0%
ATAAATAACATCCAGTTAGG+TGG + chr3_3:44185221-44185240 None:intergenic 30.0%
ACGAAAAACTTGTATGCATG+AGG - chr3_3:44180690-44180709 Msa0453610:intron 35.0%
GCACGAACATTTATGATTGA+AGG - chr3_3:44180729-44180748 Msa0453610:intron 35.0%
! CACATGAATGAGTGTTTTGT+CGG + chr3_3:44180786-44180805 None:intergenic 35.0%
ATATTCAGTGGCACTTCATT+GGG - chr3_3:44181172-44181191 Msa0453610:intron 35.0%
!!! AAGCATACTCAGAAGTGTTT+TGG + chr3_3:44181217-44181236 None:intergenic 35.0%
!!! GGGCATGTCATTGTTTTTAT+AGG + chr3_3:44181439-44181458 None:intergenic 35.0%
! CATGGATAAGTGCTTGATTT+TGG - chr3_3:44181503-44181522 Msa0453610:intron 35.0%
ACTAAGCTGATTATCTAGAC+AGG - chr3_3:44181555-44181574 Msa0453610:intron 35.0%
!! TTATCTAGACAGGTTCTAAG+TGG - chr3_3:44181565-44181584 Msa0453610:intron 35.0%
TAAAGGAGTTATCTTGGTTG+AGG - chr3_3:44181681-44181700 Msa0453610:intron 35.0%
CTAAGAGCTACTGGTAATAT+TGG + chr3_3:44181839-44181858 None:intergenic 35.0%
! TTCATATCTCTAAGAGCTAC+TGG + chr3_3:44181848-44181867 None:intergenic 35.0%
AGCTTATCGAAATCACAGTT+TGG + chr3_3:44181984-44182003 None:intergenic 35.0%
TTGTCAAATGATATGGCAAG+TGG + chr3_3:44182023-44182042 None:intergenic 35.0%
TGTTCTTGTACTTCTGTAAC+TGG - chr3_3:44182053-44182072 Msa0453610:intron 35.0%
AATATGGGATCCTAACAGTA+TGG + chr3_3:44182262-44182281 None:intergenic 35.0%
TAGGATCCCATATTTGAATG+TGG - chr3_3:44182268-44182287 Msa0453610:intron 35.0%
AGGATCCCATATTTGAATGT+GGG - chr3_3:44182269-44182288 Msa0453610:intron 35.0%
GGCATGCAAGAATTAACTAA+CGG + chr3_3:44182303-44182322 None:intergenic 35.0%
ATTCTTGCATGCCTATTATG+TGG - chr3_3:44182310-44182329 Msa0453610:intron 35.0%
TTCTTGCATGCCTATTATGT+GGG - chr3_3:44182311-44182330 Msa0453610:intron 35.0%
AAAATATAGGAAGGAGGGAA+AGG - chr3_3:44182347-44182366 Msa0453610:intron 35.0%
TCTATTAGAGCTGTAAAGGT+TGG - chr3_3:44182461-44182480 Msa0453610:intron 35.0%
CTATTAGAGCTGTAAAGGTT+GGG - chr3_3:44182462-44182481 Msa0453610:intron 35.0%
!! TTTTTAGGAGCAATAGCTCT+TGG - chr3_3:44182504-44182523 Msa0453610:intron 35.0%
!! TTTTAGGAGCAATAGCTCTT+GGG - chr3_3:44182505-44182524 Msa0453610:intron 35.0%
TGATAGGAACCTCAAATAAG+AGG + chr3_3:44182590-44182609 None:intergenic 35.0%
TGAGGTTCCTATCACATATT+CGG - chr3_3:44182596-44182615 Msa0453610:intron 35.0%
! TCTGCATCACTGTAATTTTG+TGG - chr3_3:44182661-44182680 Msa0453610:intron 35.0%
GACACTAAATTAAGAAGGCA+CGG + chr3_3:44182702-44182721 None:intergenic 35.0%
TGCCTTCTTAATTTAGTGTC+AGG - chr3_3:44182702-44182721 Msa0453610:intron 35.0%
!! TTGAAGGAGTTTTAACCAAG+AGG + chr3_3:44182869-44182888 None:intergenic 35.0%
!! CAGTAACTTTGGAATAAGAG+GGG + chr3_3:44182939-44182958 None:intergenic 35.0%
!! CTCAGTAACTTTGGAATAAG+AGG + chr3_3:44182941-44182960 None:intergenic 35.0%
CTTATTCCAAAGTTACTGAG+TGG - chr3_3:44182941-44182960 Msa0453610:intron 35.0%
TAAAAGCCACTCAGTAACTT+TGG + chr3_3:44182950-44182969 None:intergenic 35.0%
GTGCATTGTTTGTCAGAATA+CGG - chr3_3:44183121-44183140 Msa0453610:CDS 35.0%
TGTCCAAACTTAGAATTCTC+TGG - chr3_3:44183269-44183288 Msa0453610:intron 35.0%
AAGCCAGAGAATTCTAAGTT+TGG + chr3_3:44183275-44183294 None:intergenic 35.0%
! TTCTCTGGCTTAATGACAAT+AGG - chr3_3:44183284-44183303 Msa0453610:intron 35.0%
!! GAATCATTTCATTGGTTTCG+TGG - chr3_3:44183439-44183458 Msa0453610:intron 35.0%
TTCAGTCCTGCAATTTGATA+GGG + chr3_3:44183538-44183557 None:intergenic 35.0%
!! GGATGCTTTTTACCTCATAA+GGG - chr3_3:44183733-44183752 Msa0453610:intron 35.0%
AGTCAATTCATTCCCTTATG+AGG + chr3_3:44183748-44183767 None:intergenic 35.0%
AAAAATCCCACTCCAGTATT+AGG + chr3_3:44183771-44183790 None:intergenic 35.0%
!!! AATACTGGAGTGGGATTTTT+TGG - chr3_3:44183771-44183790 Msa0453610:intron 35.0%
! CTGACACATTCTCTTTTCTA+AGG - chr3_3:44183843-44183862 Msa0453610:intron 35.0%
TCCTTATTGGCACTTCTAAT+GGG + chr3_3:44184015-44184034 None:intergenic 35.0%
TTCCTTATTGGCACTTCTAA+TGG + chr3_3:44184016-44184035 None:intergenic 35.0%
AAGGAAAGTAAAACACACAG+AGG - chr3_3:44184030-44184049 Msa0453610:CDS 35.0%
!!! GCTGGGTTATTTTAACACAA+TGG - chr3_3:44184067-44184086 Msa0453610:intron 35.0%
TTGTGGTTAATTACGTTCAG+TGG - chr3_3:44184348-44184367 Msa0453610:intron 35.0%
GGGTGGTTAATGAATATAAC+AGG + chr3_3:44184395-44184414 None:intergenic 35.0%
TCATCTAATTGTTCAGAGGT+AGG - chr3_3:44184495-44184514 Msa0453610:intron 35.0%
GGTAGTACTAATGTGAGAAT+TGG - chr3_3:44184722-44184741 Msa0453610:intron 35.0%
CATGTCTTATCTACTTTAGG+AGG + chr3_3:44184817-44184836 None:intergenic 35.0%
TATGGCACAGATCTCTTAAA+TGG - chr3_3:44184844-44184863 Msa0453610:intron 35.0%
TGTACTAAGAACAAACTGCA+TGG - chr3_3:44184935-44184954 Msa0453610:intron 35.0%
GAATGCTTGTTCATGCTATT+TGG - chr3_3:44184992-44185011 Msa0453610:CDS 35.0%
! TGTTCATGCTATTTGGAAAG+AGG - chr3_3:44184999-44185018 Msa0453610:CDS 35.0%
! GTTCATGCTATTTGGAAAGA+GGG - chr3_3:44185000-44185019 Msa0453610:CDS 35.0%
AGATGGTCGCTGTATAATAA+TGG + chr3_3:44185068-44185087 None:intergenic 35.0%
TACTGATCGGAAAGCTAAGA+CGG + chr3_3:44180076-44180095 None:intergenic 40.0%
!! CATGGAAATGGGTTTGGTTT+TGG + chr3_3:44180169-44180188 None:intergenic 40.0%
AGTTGGCGAATCATGGAAAT+GGG + chr3_3:44180180-44180199 None:intergenic 40.0%
GAGCTTTCTCAACGATTTCT+TGG + chr3_3:44180242-44180261 None:intergenic 40.0%
! TTTATGATTGAAGGTGTGCC+TGG - chr3_3:44180738-44180757 Msa0453610:intron 40.0%
TTCACCAATGGAAGTGATGA+TGG - chr3_3:44180903-44180922 Msa0453610:intron 40.0%
TCACCAATGGAAGTGATGAT+GGG - chr3_3:44180904-44180923 Msa0453610:intron 40.0%
! AAGTGCCACTGAATATCTTG+CGG + chr3_3:44181168-44181187 None:intergenic 40.0%
GATATTCAGTGGCACTTCAT+TGG - chr3_3:44181171-44181190 Msa0453610:intron 40.0%
TCCCAAGAACAAGTTTATCC+CGG + chr3_3:44181591-44181610 None:intergenic 40.0%
TTATCTTGGTTGAGGCTGTT+TGG - chr3_3:44181689-44181708 Msa0453610:intron 40.0%
CCTGCATAATAAAGCACACA+AGG + chr3_3:44181756-44181775 None:intergenic 40.0%
! CCTTGTGTGCTTTATTATGC+AGG - chr3_3:44181753-44181772 Msa0453610:intron 40.0%
! TGTGTGCTTTATTATGCAGG+CGG - chr3_3:44181756-44181775 Msa0453610:intron 40.0%
! TTCCCAGGTTTGAAACCATA+CGG + chr3_3:44182099-44182118 None:intergenic 40.0%
! AAGAAATCGTCTGAGGGTTT+TGG - chr3_3:44182117-44182136 Msa0453610:intron 40.0%
TTGGTGCAAGTAAATACCAG+TGG - chr3_3:44182136-44182155 Msa0453610:intron 40.0%
GAACTTACATTCTTCTCCAC+TGG + chr3_3:44182155-44182174 None:intergenic 40.0%
TCTTGCATGCCTATTATGTG+GGG - chr3_3:44182312-44182331 Msa0453610:intron 40.0%
AACATCACTCCCCACATAAT+AGG + chr3_3:44182324-44182343 None:intergenic 40.0%
AGATACGCCGAATATGTGAT+AGG + chr3_3:44182606-44182625 None:intergenic 40.0%
AAACTCCTTCAACATTGCTC+AGG - chr3_3:44182877-44182896 Msa0453610:intron 40.0%
!! AACTTTGGAATAAGAGGGGA+AGG + chr3_3:44182935-44182954 None:intergenic 40.0%
! TTGTTTGTTGCAGCCAAATC+TGG - chr3_3:44183197-44183216 Msa0453610:intron 40.0%
ACTATTACCCGAAAGTTCTG+CGG + chr3_3:44183332-44183351 None:intergenic 40.0%
TGTAGACCCTATCAAATTGC+AGG - chr3_3:44183529-44183548 Msa0453610:intron 40.0%
CTTCAGTCCTGCAATTTGAT+AGG + chr3_3:44183539-44183558 None:intergenic 40.0%
! AGTTTGCAAGGCACTTGAAA+TGG - chr3_3:44183557-44183576 Msa0453610:intron 40.0%
GAGCAATGTGAACTGTCAAT+GGG - chr3_3:44183585-44183604 Msa0453610:intron 40.0%
!! CGGATGCTTTTTACCTCATA+AGG - chr3_3:44183732-44183751 Msa0453610:intron 40.0%
! ATTGACTCCTAATACTGGAG+TGG - chr3_3:44183761-44183780 Msa0453610:intron 40.0%
TTGACTCCTAATACTGGAGT+GGG - chr3_3:44183762-44183781 Msa0453610:intron 40.0%
GTTATGTCATGATAGATCGG+TGG - chr3_3:44183877-44183896 Msa0453610:intron 40.0%
CCTTATTGGCACTTCTAATG+GGG + chr3_3:44184014-44184033 None:intergenic 40.0%
CACACAGAGGATAGTCTAAT+AGG - chr3_3:44184043-44184062 Msa0453610:intron 40.0%
AGGATAGTCTAATAGGAGCT+GGG - chr3_3:44184050-44184069 Msa0453610:intron 40.0%
GATTGATCACTTGACAATCG+TGG - chr3_3:44184309-44184328 Msa0453610:intron 40.0%
! GGTTAGTTATGTTAAGTGGG+TGG + chr3_3:44184412-44184431 None:intergenic 40.0%
TCAGAGGTAGGAGATGATTA+AGG - chr3_3:44184507-44184526 Msa0453610:intron 40.0%
! CTTGCCTTTTCAGATCGAAT+CGG - chr3_3:44184700-44184719 Msa0453610:intron 40.0%
! TTGCCTTTTCAGATCGAATC+GGG - chr3_3:44184701-44184720 Msa0453610:intron 40.0%
! TGCTATTTGGAAAGAGGGAA+AGG - chr3_3:44185005-44185024 Msa0453610:CDS 40.0%
GCTATTTGGAAAGAGGGAAA+GGG - chr3_3:44185006-44185025 Msa0453610:CDS 40.0%
TTGGTGGAAGATGAGACAAG+TGG + chr3_3:44180023-44180042 None:intergenic 45.0%
TCTTCCACCAATGACATCTC+CGG - chr3_3:44180032-44180051 Msa0453610:three_prime_UTR 45.0%
! GCGAATCATGGAAATGGGTT+TGG + chr3_3:44180175-44180194 None:intergenic 45.0%
GAGTTGGCGAATCATGGAAA+TGG + chr3_3:44180181-44180200 None:intergenic 45.0%
GTCATAGAGTTGGCGAATCA+TGG + chr3_3:44180187-44180206 None:intergenic 45.0%
TATGACCAGCGTCATAGAGT+TGG + chr3_3:44180197-44180216 None:intergenic 45.0%
ACGCTGGTCATAGAGTCTTT+GGG - chr3_3:44180205-44180224 Msa0453610:three_prime_UTR 45.0%
AATCGTTGAGAAAGCTCCTC+AGG - chr3_3:44180245-44180264 Msa0453610:intron 45.0%
GTACGAACACTCCTCAGATT+AGG - chr3_3:44180350-44180369 Msa0453610:intron 45.0%
TCCTCAGATTAGGTGTCTTC+CGG - chr3_3:44180360-44180379 Msa0453610:three_prime_UTR 45.0%
AGTCCCATCATCACTTCCAT+TGG + chr3_3:44180910-44180929 None:intergenic 45.0%
AGCTTCCGCAAGATATTCAG+TGG - chr3_3:44181160-44181179 Msa0453610:intron 45.0%
! GCCGGGATAAACTTGTTCTT+GGG - chr3_3:44181587-44181606 Msa0453610:intron 45.0%
TCCAAATTTGGCCATGGTTG+AGG - chr3_3:44181782-44181801 Msa0453610:intron 45.0%
CCAAATTTGGCCATGGTTGA+GGG - chr3_3:44181783-44181802 Msa0453610:intron 45.0%
CTTGTACTTCTGTAACTGGC+AGG - chr3_3:44182057-44182076 Msa0453610:intron 45.0%
GGCAAATAACCTTGACCGTA+TGG - chr3_3:44182081-44182100 Msa0453610:intron 45.0%
! GGTTTGAAACCATACGGTCA+AGG + chr3_3:44182093-44182112 None:intergenic 45.0%
TGACCGTATGGTTTCAAACC+TGG - chr3_3:44182093-44182112 Msa0453610:intron 45.0%
GACCGTATGGTTTCAAACCT+GGG - chr3_3:44182094-44182113 Msa0453610:intron 45.0%
AAAGGATTATGACCTGGCAG+AGG - chr3_3:44182365-44182384 Msa0453610:intron 45.0%
AGCAATAGCTCTTGGGTTAC+AGG - chr3_3:44182512-44182531 Msa0453610:intron 45.0%
GCAATAGCTCTTGGGTTACA+GGG - chr3_3:44182513-44182532 Msa0453610:intron 45.0%
!! GGAGTTTTAACCAAGAGGTC+TGG + chr3_3:44182864-44182883 None:intergenic 45.0%
GATGACCTGAGCAATGTTGA+AGG + chr3_3:44182885-44182904 None:intergenic 45.0%
GGAAGGATCAACACCAGATT+TGG + chr3_3:44183213-44183232 None:intergenic 45.0%
GCAAGATCAACACAATCGGA+AGG + chr3_3:44183230-44183249 None:intergenic 45.0%
GACATTAGAGTTTAGCGTCG+AGG + chr3_3:44183479-44183498 None:intergenic 45.0%
TTGCAGGACTGAAGTTTGCA+AGG - chr3_3:44183545-44183564 Msa0453610:intron 45.0%
GGAGCAATGTGAACTGTCAA+TGG - chr3_3:44183584-44183603 Msa0453610:intron 45.0%
!!! GTCTGGCGATTTTGAGTTAG+CGG - chr3_3:44183611-44183630 Msa0453610:intron 45.0%
!!! GCGATTTTGAGTTAGCGGTA+TGG - chr3_3:44183616-44183635 Msa0453610:intron 45.0%
!! CCCCATTAGAAGTGCCAATA+AGG - chr3_3:44184011-44184030 Msa0453610:CDS 45.0%
GAGGATAGTCTAATAGGAGC+TGG - chr3_3:44184049-44184068 Msa0453610:intron 45.0%
! CTACCCGATTCGATCTGAAA+AGG + chr3_3:44184707-44184726 None:intergenic 45.0%
GGTGTGTTTGTCTGTTGAGG+TGG + chr3_3:44179999-44180018 None:intergenic 50.0%
GGTGGTGTGTTTGTCTGTTG+AGG + chr3_3:44180002-44180021 None:intergenic 50.0%
GTGGAAGATGAGACAAGTGG+TGG + chr3_3:44180020-44180039 None:intergenic 50.0%
ATCACCGGAGATGTCATTGG+TGG + chr3_3:44180039-44180058 None:intergenic 50.0%
ACCAATGACATCTCCGGTGA+TGG - chr3_3:44180038-44180057 Msa0453610:three_prime_UTR 50.0%
! AATGACATCTCCGGTGATGG+CGG - chr3_3:44180041-44180060 Msa0453610:three_prime_UTR 50.0%
! GGACACGGAGCATTACTGAT+CGG + chr3_3:44180089-44180108 None:intergenic 50.0%
AATGCTCCGTGTCCAACAAG+CGG - chr3_3:44180095-44180114 Msa0453610:three_prime_UTR 50.0%
! AACTCGATCGGGTTTGGTTC+CGG + chr3_3:44180130-44180149 None:intergenic 50.0%
GAACCAAACCCGATCGAGTT+CGG - chr3_3:44180130-44180149 Msa0453610:three_prime_UTR 50.0%
AACCAAACCCGATCGAGTTC+GGG - chr3_3:44180131-44180150 Msa0453610:three_prime_UTR 50.0%
ATTCGCCAACTCTATGACGC+TGG - chr3_3:44180189-44180208 Msa0453610:three_prime_UTR 50.0%
GACGCTGGTCATAGAGTCTT+TGG - chr3_3:44180204-44180223 Msa0453610:three_prime_UTR 50.0%
CGCTGGTCATAGAGTCTTTG+GGG - chr3_3:44180206-44180225 Msa0453610:three_prime_UTR 50.0%
ACCGGAAGACACCTAATCTG+AGG + chr3_3:44180364-44180383 None:intergenic 50.0%
GATTAGGTGTCTTCCGGTGT+TGG - chr3_3:44180366-44180385 Msa0453610:three_prime_UTR 50.0%
TGACACATGTGTCGAACACC+AGG + chr3_3:44180759-44180778 None:intergenic 50.0%
!! CTAGACAGGTTCTAAGTGGC+CGG - chr3_3:44181569-44181588 Msa0453610:intron 50.0%
!! TAGACAGGTTCTAAGTGGCC+GGG - chr3_3:44181570-44181589 Msa0453610:intron 50.0%
! GGCCGGGATAAACTTGTTCT+TGG - chr3_3:44181586-44181605 Msa0453610:intron 50.0%
TGCAGGCGGAGTTCCAAATT+TGG - chr3_3:44181770-44181789 Msa0453610:intron 50.0%
CGGAGTTCCAAATTTGGCCA+TGG - chr3_3:44181776-44181795 Msa0453610:intron 50.0%
CCCTCAACCATGGCCAAATT+TGG + chr3_3:44181786-44181805 None:intergenic 50.0%
GTACTTCTGTAACTGGCAGG+TGG - chr3_3:44182060-44182079 Msa0453610:intron 50.0%
ACCTGGGAAGAAATCGTCTG+AGG - chr3_3:44182110-44182129 Msa0453610:intron 50.0%
CCTGGGAAGAAATCGTCTGA+GGG - chr3_3:44182111-44182130 Msa0453610:intron 50.0%
ACGAGGGTTTCCAACATCCT+CGG - chr3_3:44182223-44182242 Msa0453610:intron 50.0%
CGAAGCTGAGCCATACTGTT+AGG - chr3_3:44182249-44182268 Msa0453610:intron 50.0%
GGAGGGAAAGGATTATGACC+TGG - chr3_3:44182359-44182378 Msa0453610:intron 50.0%
TTATGACCTGGCAGAGGCTA+AGG - chr3_3:44182371-44182390 Msa0453610:intron 50.0%
TATGACCTGGCAGAGGCTAA+GGG - chr3_3:44182372-44182391 Msa0453610:intron 50.0%
GGTTAGAACTCCAGACCTCT+TGG - chr3_3:44182851-44182870 Msa0453610:intron 50.0%
TGATTCCCAAGTAGGCAGCT+CGG + chr3_3:44182910-44182929 None:intergenic 50.0%
! GGAAGGTGTGATTCCCAAGT+AGG + chr3_3:44182918-44182937 None:intergenic 50.0%
TGCGGAGTTGAGGTATAGTC+TGG + chr3_3:44183314-44183333 None:intergenic 50.0%
CCTCAACTCCGCAGAACTTT+CGG - chr3_3:44183321-44183340 Msa0453610:intron 50.0%
CTCAACTCCGCAGAACTTTC+GGG - chr3_3:44183322-44183341 Msa0453610:intron 50.0%
! CAAGGCACTTGAAATGGACG+AGG - chr3_3:44183563-44183582 Msa0453610:intron 50.0%
GAACTGTCAATGGGCATGTC+TGG - chr3_3:44183594-44183613 Msa0453610:intron 50.0%
GCCATCACCGGAGATGTCAT+TGG + chr3_3:44180042-44180061 None:intergenic 55.0%
! TTTCCGCCGCTTGTTGGACA+CGG + chr3_3:44180104-44180123 None:intergenic 55.0%
CAACAAGCGGCGGAAAGATC+CGG - chr3_3:44180108-44180127 Msa0453610:three_prime_UTR 55.0%
TGCAACGACCCGAACTCGAT+CGG + chr3_3:44180142-44180161 None:intergenic 55.0%
ATTGTCCACGCCCTCAACCA+TGG + chr3_3:44181796-44181815 None:intergenic 55.0%
! TGAGGGCGTGGACAATCAGA+AGG - chr3_3:44181800-44181819 Msa0453610:intron 55.0%
CCCTCAGACGATTTCTTCCC+AGG + chr3_3:44182114-44182133 None:intergenic 55.0%
CGAGGGTTTCCAACATCCTC+GGG - chr3_3:44182224-44182243 Msa0453610:intron 55.0%
ATCCACCGAGCTGCCTACTT+GGG - chr3_3:44182902-44182921 Msa0453610:intron 55.0%
CCGAAAGTTCTGCGGAGTTG+AGG + chr3_3:44183324-44183343 None:intergenic 55.0%
CGGATCTTTCCGCCGCTTGT+TGG + chr3_3:44180110-44180129 None:intergenic 60.0%
GACCCGAACTCGATCGGGTT+TGG + chr3_3:44180136-44180155 None:intergenic 60.0%
GCAACGACCCGAACTCGATC+GGG + chr3_3:44180141-44180160 None:intergenic 60.0%
! TTCCGGTGTTGGACACGCGT+CGG - chr3_3:44180377-44180396 Msa0453610:three_prime_UTR 60.0%
TTTGGCCATGGTTGAGGGCG+TGG - chr3_3:44181788-44181807 Msa0453610:intron 60.0%
CATCCACCGAGCTGCCTACT+TGG - chr3_3:44182901-44182920 Msa0453610:intron 60.0%
TTCCCAAGTAGGCAGCTCGG+TGG + chr3_3:44182907-44182926 None:intergenic 60.0%
GCAGCTGCTTCCGCCATCAC+CGG + chr3_3:44180054-44180073 None:intergenic 65.0%
GCTCCGTGTCCAACAAGCGG+CGG - chr3_3:44180098-44180117 Msa0453610:three_prime_UTR 65.0%
CACCGACGCGTGTCCAACAC+CGG + chr3_3:44180382-44180401 None:intergenic 65.0%
AGCTTCGCGCCCGAGGATGT+TGG + chr3_3:44182236-44182255 None:intergenic 65.0%
GTGCACCCTTAGCCTCTGCC+AGG + chr3_3:44182380-44182399 None:intergenic 65.0%
ATGGCTCAGCTTCGCGCCCG+AGG + chr3_3:44182243-44182262 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 44179926 44185294 44179926 ID=Msa0453610;Name=Msa0453610
chr3_3 mRNA 44179926 44185294 44179926 ID=Msa0453610-mRNA-1;Parent=Msa0453610;Name=Msa0453610-mRNA-1;_AED=0.11;_eAED=0.11;_QI=96|1|1|1|0.75|0.55|9|380|244
chr3_3 exon 44179926 44180227 44179926 ID=Msa0453610-mRNA-1:exon:8098;Parent=Msa0453610-mRNA-1
chr3_3 exon 44180355 44180507 44180355 ID=Msa0453610-mRNA-1:exon:8097;Parent=Msa0453610-mRNA-1
chr3_3 exon 44181588 44181686 44181588 ID=Msa0453610-mRNA-1:exon:8096;Parent=Msa0453610-mRNA-1
chr3_3 exon 44181877 44182010 44181877 ID=Msa0453610-mRNA-1:exon:8095;Parent=Msa0453610-mRNA-1
chr3_3 exon 44183054 44183141 44183054 ID=Msa0453610-mRNA-1:exon:8094;Parent=Msa0453610-mRNA-1
chr3_3 exon 44183399 44183445 44183399 ID=Msa0453610-mRNA-1:exon:8093;Parent=Msa0453610-mRNA-1
chr3_3 exon 44183992 44184058 44183992 ID=Msa0453610-mRNA-1:exon:8092;Parent=Msa0453610-mRNA-1
chr3_3 exon 44184954 44185180 44184954 ID=Msa0453610-mRNA-1:exon:8091;Parent=Msa0453610-mRNA-1
chr3_3 exon 44185201 44185294 44185201 ID=Msa0453610-mRNA-1:exon:8090;Parent=Msa0453610-mRNA-1
chr3_3 five_prime_UTR 44185201 44185294 44185201 ID=Msa0453610-mRNA-1:five_prime_utr;Parent=Msa0453610-mRNA-1
chr3_3 five_prime_UTR 44185179 44185180 44185179 ID=Msa0453610-mRNA-1:five_prime_utr;Parent=Msa0453610-mRNA-1
chr3_3 CDS 44184954 44185178 44184954 ID=Msa0453610-mRNA-1:cds;Parent=Msa0453610-mRNA-1
chr3_3 CDS 44183992 44184058 44183992 ID=Msa0453610-mRNA-1:cds;Parent=Msa0453610-mRNA-1
chr3_3 CDS 44183399 44183445 44183399 ID=Msa0453610-mRNA-1:cds;Parent=Msa0453610-mRNA-1
chr3_3 CDS 44183054 44183141 44183054 ID=Msa0453610-mRNA-1:cds;Parent=Msa0453610-mRNA-1
chr3_3 CDS 44181877 44182010 44181877 ID=Msa0453610-mRNA-1:cds;Parent=Msa0453610-mRNA-1
chr3_3 CDS 44181588 44181686 44181588 ID=Msa0453610-mRNA-1:cds;Parent=Msa0453610-mRNA-1
chr3_3 CDS 44180433 44180507 44180433 ID=Msa0453610-mRNA-1:cds;Parent=Msa0453610-mRNA-1
chr3_3 three_prime_UTR 44180355 44180432 44180355 ID=Msa0453610-mRNA-1:three_prime_utr;Parent=Msa0453610-mRNA-1
chr3_3 three_prime_UTR 44179926 44180227 44179926 ID=Msa0453610-mRNA-1:three_prime_utr;Parent=Msa0453610-mRNA-1
Gene Sequence

>Msa0453610

ATGACATCTCCGGTGATGGCGGAAGCAGCTGCCGTCTTAGCTTTCCGATCAGTAATGCTCCGTGTCCAACAAGCGGCGGAAAGATCCGGAACCAAACCCGATCGAGTTCGGGTCGTTGCAGTATCCAAAACCAAACCCATTTCCATGATTCGCCAACTCTATGACGCTGGTCATAGAGTCTTTGGGGAAAACTATGTCCAAGAAATCGTTGAGAAAGCTCCTCAGCTTCCGCAAGATATTCAGTGGCACTTCATTGGGCATTTGCAGAGCAATAAAGCCAAAACACTTCTGAGCGGAGTTCCAAATTTGGCCATGGTTGAGGGCGTGGACAATCAGAAGGTGGCAAATAACCTTGACCGTATGGTTTCAAACCTGGGAAGAAATCGTCTGAGGGTTTTGGTGCAAGTAAATACCAGTGGAGAAGAATCCAAATCTGGTGTTGATCCTTCCGATTGTGTTGATCTTGCAAAACATGTTAAATTGAGCTGTCCAAACTTAGAATTCTCTGGCTTAATGACAATAGGAATGCCAGACTATACCTCAACTCCGCAGAACTTTCGGACCCTATCAAATTGCAGGACTGAAGTTTGCAAGGCACTTGAAATGGACGAGGAGCAATGTGAACTGTCAATGGGCATGTCTGGCGATTTTGAGTTAGCGATCGAATCGGGTAGTACTAATGTGAGAATTGGGTCAACAATATTTGGTCCAAGAGAATATGCAAAAAAGCAATGA

Protein sequence

>Msa0453610

MTSPVMAEAAAVLAFRSVMLRVQQAAERSGTKPDRVRVVAVSKTKPISMIRQLYDAGHRVFGENYVQEIVEKAPQLPQDIQWHFIGHLQSNKAKTLLSGVPNLAMVEGVDNQKVANNLDRMVSNLGRNRLRVLVQVNTSGEESKSGVDPSDCVDLAKHVKLSCPNLEFSGLMTIGMPDYTSTPQNFRTLSNCRTEVCKALEMDEEQCELSMGMSGDFELAIESGSTNVRIGSTIFGPREYAKKQ*