Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722700 | XP_003614051.1 | 99.225 | 258 | 2 | 0 | 1 | 258 | 1 | 258 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722700 | sp|Q9C5W6|14312_ARATH | 84.170 | 259 | 36 | 1 | 3 | 256 | 6 | 264 | 3.96e-160 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722700 | G7JWT4 | 99.225 | 258 | 2 | 0 | 1 | 258 | 1 | 258 | 0.0 | 526 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0722700 | 0.828509 | 8.641251e-55 | -8.615850e-47 |
| Msa0050530 | Msa0722700 | 0.838396 | 2.948417e-57 | -8.615850e-47 |
| Msa0100600 | Msa0722700 | 0.817895 | 2.600286e-52 | -8.615850e-47 |
| Msa0100890 | Msa0722700 | 0.814183 | 1.753718e-51 | -8.615850e-47 |
| Msa0618840 | Msa0722700 | 0.821474 | 3.961781e-53 | -8.615850e-47 |
| Msa0618990 | Msa0722700 | 0.816230 | 6.155849e-52 | -8.615850e-47 |
| Msa0640800 | Msa0722700 | 0.802318 | 5.939857e-49 | -8.615850e-47 |
| Msa0663290 | Msa0722700 | 0.831255 | 1.851566e-55 | -8.615850e-47 |
| Msa0664070 | Msa0722700 | 0.826945 | 2.053386e-54 | -8.615850e-47 |
| Msa0689830 | Msa0722700 | 0.837921 | 3.907006e-57 | -8.615850e-47 |
| Msa0708980 | Msa0722700 | 0.813971 | 1.953539e-51 | -8.615850e-47 |
| Msa0722700 | Msa0737140 | 0.804648 | 1.952839e-49 | -8.615850e-47 |
| Msa0722700 | Msa0751720 | 0.822795 | 1.957096e-53 | -8.615850e-47 |
| Msa0722700 | Msa0816230 | 0.819405 | 1.181711e-52 | -8.615850e-47 |
| Msa0722700 | Msa0837680 | 0.802107 | 6.562180e-49 | -8.615850e-47 |
| Msa0722700 | Msa0846900 | 0.828789 | 7.396713e-55 | -8.615850e-47 |
| Msa0722700 | Msa0856610 | 0.808574 | 2.897506e-50 | -8.615850e-47 |
| Msa0722700 | Msa0926310 | 0.825372 | 4.858371e-54 | -8.615850e-47 |
| Msa0722700 | Msa1000780 | 0.808273 | 3.358116e-50 | -8.615850e-47 |
| Msa0722700 | Msa1021560 | 0.808098 | 3.659796e-50 | -8.615850e-47 |
| Msa0722700 | Msa1060300 | 0.825081 | 5.692034e-54 | -8.615850e-47 |
| Msa0722700 | Msa1078860 | 0.802226 | 6.204675e-49 | -8.615850e-47 |
| Msa0722700 | Msa1078990 | 0.806997 | 6.267808e-50 | -8.615850e-47 |
| Msa0722700 | Msa1105540 | 0.816668 | 4.910645e-52 | -8.615850e-47 |
| Msa0722700 | Msa1105580 | 0.830832 | 2.352037e-55 | -8.615850e-47 |
| Msa0722700 | Msa1124210 | 0.820279 | 7.460555e-53 | -8.615850e-47 |
| Msa0722700 | Msa1148930 | 0.822742 | 2.013236e-53 | -8.615850e-47 |
| Msa0722700 | Msa1169690 | 0.800598 | 1.336902e-48 | -8.615850e-47 |
| Msa0722700 | Msa1339230 | 0.803398 | 3.552428e-49 | -8.615850e-47 |
| Msa0722700 | Msa1372030 | 0.803557 | 3.293424e-49 | -8.615850e-47 |
| Msa0722700 | Msa1399190 | 0.816197 | 6.260155e-52 | -8.615850e-47 |
| Msa0170070 | Msa0722700 | 0.812713 | 3.691797e-51 | -8.615850e-47 |
| Msa0429970 | Msa0722700 | 0.827210 | 1.774107e-54 | -8.615850e-47 |
| Msa0433630 | Msa0722700 | 0.818183 | 2.239148e-52 | -8.615850e-47 |
| Msa0477480 | Msa0722700 | 0.822415 | 2.398161e-53 | -8.615850e-47 |
| Msa0288400 | Msa0722700 | 0.821658 | 3.591716e-53 | -8.615850e-47 |
| Msa0342220 | Msa0722700 | 0.833205 | 6.096620e-56 | -8.615850e-47 |
| Msa0514020 | Msa0722700 | 0.802413 | 5.677267e-49 | -8.615850e-47 |
| Msa0527850 | Msa0722700 | 0.816955 | 4.234253e-52 | -8.615850e-47 |
| Msa0544410 | Msa0722700 | 0.818177 | 2.245542e-52 | -8.615850e-47 |
| Msa0544430 | Msa0722700 | 0.818337 | 2.066337e-52 | -8.615850e-47 |
| Msa0572830 | Msa0722700 | 0.827800 | 1.280850e-54 | -8.615850e-47 |
| Msa0576330 | Msa0722700 | 0.802600 | 5.195524e-49 | -8.615850e-47 |
| Msa0582460 | Msa0722700 | 0.808522 | 2.972497e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722700 | MtrunA17_Chr5g0418971 | 99.225 | 258 | 2 | 0 | 1 | 258 | 1 | 258 | 0.0 | 526 |
| Msa0722700 | MtrunA17_Chr4g0043141 | 82.353 | 238 | 23 | 1 | 26 | 244 | 1 | 238 | 3.55e-144 | 405 |
| Msa0722700 | MtrunA17_Chr2g0325591 | 75.100 | 249 | 61 | 1 | 1 | 249 | 1 | 248 | 6.47e-141 | 397 |
| Msa0722700 | MtrunA17_Chr8g0379011 | 76.955 | 243 | 56 | 0 | 1 | 243 | 1 | 243 | 3.64e-140 | 395 |
| Msa0722700 | MtrunA17_Chr2g0316011 | 74.897 | 243 | 61 | 0 | 7 | 249 | 8 | 250 | 5.93e-137 | 388 |
| Msa0722700 | MtrunA17_Chr2g0283791 | 74.897 | 243 | 59 | 2 | 11 | 253 | 9 | 249 | 6.11e-134 | 380 |
| Msa0722700 | MtrunA17_Chr3g0132301 | 70.817 | 257 | 72 | 3 | 2 | 256 | 3 | 258 | 3.20e-126 | 360 |
| Msa0722700 | MtrunA17_Chr5g0426551 | 68.627 | 255 | 75 | 2 | 2 | 254 | 3 | 254 | 1.73e-122 | 351 |
| Msa0722700 | MtrunA17_Chr3g0133161 | 66.809 | 235 | 75 | 1 | 7 | 238 | 11 | 245 | 5.14e-112 | 324 |
| Msa0722700 | MtrunA17_Chr1g0164601 | 52.542 | 236 | 102 | 5 | 7 | 237 | 11 | 241 | 9.93e-73 | 224 |
| Msa0722700 | MtrunA17_Chr3g0082111 | 52.119 | 236 | 103 | 5 | 7 | 237 | 41 | 271 | 2.83e-71 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722700 | AT1G26480.1 | 84.170 | 259 | 36 | 1 | 3 | 256 | 6 | 264 | 4.03e-161 | 449 |
| Msa0722700 | AT1G34760.1 | 79.424 | 243 | 49 | 1 | 4 | 246 | 2 | 243 | 8.34e-142 | 400 |
| Msa0722700 | AT1G34760.2 | 79.424 | 243 | 49 | 1 | 4 | 246 | 2 | 243 | 8.93e-142 | 400 |
| Msa0722700 | AT2G42590.3 | 71.910 | 267 | 70 | 2 | 1 | 262 | 1 | 267 | 2.08e-139 | 395 |
| Msa0722700 | AT2G42590.1 | 73.828 | 256 | 66 | 1 | 1 | 255 | 1 | 256 | 6.93e-139 | 393 |
| Msa0722700 | AT2G42590.2 | 73.333 | 255 | 68 | 0 | 1 | 255 | 1 | 255 | 1.67e-137 | 389 |
| Msa0722700 | AT1G22300.2 | 74.400 | 250 | 64 | 0 | 4 | 253 | 2 | 251 | 6.21e-134 | 380 |
| Msa0722700 | AT1G22300.1 | 74.400 | 250 | 64 | 0 | 4 | 253 | 2 | 251 | 6.49e-134 | 380 |
| Msa0722700 | AT1G22300.3 | 76.250 | 240 | 57 | 0 | 4 | 243 | 2 | 241 | 1.90e-132 | 376 |
| Msa0722700 | AT1G35160.1 | 72.222 | 252 | 68 | 1 | 7 | 256 | 11 | 262 | 3.73e-126 | 361 |
| Msa0722700 | AT3G02520.1 | 71.705 | 258 | 65 | 3 | 7 | 256 | 5 | 262 | 9.82e-126 | 360 |
| Msa0722700 | AT3G02520.2 | 71.705 | 258 | 65 | 3 | 7 | 256 | 5 | 262 | 9.82e-126 | 360 |
| Msa0722700 | AT5G38480.1 | 71.429 | 252 | 70 | 2 | 7 | 256 | 4 | 255 | 1.47e-125 | 359 |
| Msa0722700 | AT1G78300.1 | 70.635 | 252 | 72 | 2 | 7 | 256 | 5 | 256 | 4.00e-124 | 355 |
| Msa0722700 | AT5G38480.3 | 72.800 | 250 | 63 | 4 | 7 | 254 | 4 | 250 | 7.62e-124 | 354 |
| Msa0722700 | AT5G38480.2 | 72.800 | 250 | 63 | 4 | 7 | 254 | 4 | 250 | 7.62e-124 | 354 |
| Msa0722700 | AT4G09000.1 | 70.732 | 246 | 70 | 1 | 2 | 245 | 5 | 250 | 2.99e-122 | 351 |
| Msa0722700 | AT1G35160.2 | 74.786 | 234 | 57 | 1 | 7 | 238 | 11 | 244 | 6.33e-122 | 351 |
| Msa0722700 | AT4G09000.2 | 72.385 | 239 | 64 | 1 | 2 | 238 | 5 | 243 | 3.64e-120 | 347 |
| Msa0722700 | AT5G16050.1 | 66.288 | 264 | 79 | 2 | 1 | 254 | 1 | 264 | 1.46e-118 | 342 |
| Msa0722700 | AT5G16050.2 | 66.288 | 264 | 79 | 2 | 1 | 254 | 1 | 264 | 1.46e-118 | 342 |
| Msa0722700 | AT5G65430.1 | 66.397 | 247 | 80 | 1 | 1 | 244 | 1 | 247 | 4.05e-114 | 330 |
| Msa0722700 | AT5G65430.2 | 66.803 | 244 | 78 | 1 | 1 | 241 | 1 | 244 | 4.70e-114 | 329 |
| Msa0722700 | AT5G65430.3 | 67.220 | 241 | 76 | 1 | 1 | 238 | 1 | 241 | 5.83e-113 | 327 |
| Msa0722700 | AT5G10450.1 | 65.021 | 243 | 82 | 1 | 1 | 240 | 1 | 243 | 5.79e-112 | 324 |
| Msa0722700 | AT5G10450.2 | 64.754 | 244 | 83 | 1 | 1 | 241 | 1 | 244 | 8.01e-112 | 323 |
| Msa0722700 | AT5G10450.3 | 65.145 | 241 | 81 | 1 | 1 | 238 | 1 | 241 | 2.87e-111 | 323 |
| Msa0722700 | AT5G10450.4 | 65.145 | 241 | 81 | 1 | 1 | 238 | 1 | 241 | 1.26e-110 | 322 |
| Msa0722700 | AT1G78220.1 | 51.709 | 234 | 112 | 1 | 4 | 236 | 2 | 235 | 1.37e-81 | 247 |
| Msa0722700 | AT1G22290.2 | 49.537 | 216 | 85 | 5 | 4 | 214 | 2 | 198 | 8.66e-59 | 187 |
| Msa0722700 | AT1G22290.1 | 49.296 | 213 | 84 | 5 | 4 | 211 | 2 | 195 | 3.44e-58 | 185 |
| Msa0722700 | AT2G10450.1 | 48.387 | 62 | 32 | 0 | 204 | 265 | 16 | 77 | 1.75e-12 | 62.4 |
Find 96 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAATGTCACCACAGATTT+TGG | 0.117398 | 5_1:-20104260 | None:intergenic |
| GAACCGATTGCTTACCTTTC+AGG | 0.129498 | 5_1:-20105360 | None:intergenic |
| GGACTAGACAAGGTGGAATT+TGG | 0.236275 | 5_1:+20106465 | Msa0722700:three_prime_UTR |
| TGAGCAGAAGGAGGAGTCTA+AGG | 0.249783 | 5_1:+20104177 | Msa0722700:CDS |
| GCAGGAAAGGTGATTATTTC+CGG | 0.278329 | 5_1:+20105065 | Msa0722700:intron |
| TGAGAGACAACCTGACTCTT+TGG | 0.293543 | 5_1:+20105553 | Msa0722700:CDS |
| CGCCTCATCAAAAGCTTGTT+TGG | 0.319773 | 5_1:-20105466 | None:intergenic |
| TAGATACATCACTACCGAAT+TGG | 0.327415 | 5_1:-20106393 | None:intergenic |
| AGGCAAAGAAGAAGAAGAAA+TGG | 0.328933 | 5_1:-20103071 | None:intergenic |
| TACCTCAGGCTCAGCGGGTT+TGG | 0.338393 | 5_1:-20106122 | None:intergenic |
| AGAGTTCCTCCTCAACCTTT+TGG | 0.345006 | 5_1:-20104237 | None:intergenic |
| CAAAAGCTTGTTTGGCCAAA+TGG | 0.349323 | 5_1:-20105458 | None:intergenic |
| TGCATTCATTGAGTCTGAAT+TGG | 0.356485 | 5_1:+20106674 | Msa0722700:three_prime_UTR |
| CAGCATTGATAAGATTTCAT+TGG | 0.357814 | 5_1:+20106360 | Msa0722700:intron |
| ATAAGATTTCATTGGATCTC+TGG | 0.360076 | 5_1:+20106368 | Msa0722700:CDS |
| AACTTACAGGGCCTGCCATT+TGG | 0.370260 | 5_1:+20105443 | Msa0722700:intron |
| AGATACATCACTACCGAATT+GGG | 0.372560 | 5_1:-20106392 | None:intergenic |
| GAGAGAGACCCAAGTTTACT+TGG | 0.378465 | 5_1:+20103164 | Msa0722700:CDS |
| AGGTGCAGATCTTCCGGCTT+CGG | 0.381800 | 5_1:-20106524 | None:intergenic |
| GACAATTATTGACCAGCATC+TGG | 0.387445 | 5_1:+20104282 | Msa0722700:CDS |
| TTCAGCTTGTTCAGAAAGCT+TGG | 0.414542 | 5_1:-20103187 | None:intergenic |
| AAAGCTTGGCCAAGTAAACT+TGG | 0.417000 | 5_1:-20103173 | None:intergenic |
| GGCAATAGAAATAAGTTTGA+AGG | 0.437789 | 5_1:-20106579 | None:intergenic |
| GGTATGTGTAAGATTGGTTT+CGG | 0.440894 | 5_1:+20106141 | Msa0722700:CDS |
| TCTAAGATACTCAGTGAAGA+TGG | 0.442808 | 5_1:+20106412 | Msa0722700:CDS |
| CGAAAATCGAGCTTGTTGTA+AGG | 0.449290 | 5_1:-20103000 | None:intergenic |
| AAAGACAGGTGCAGATCTTC+CGG | 0.451607 | 5_1:-20106530 | None:intergenic |
| AATTACACTATTCAGTAAAA+CGG | 0.456201 | 5_1:-20106729 | None:intergenic |
| AGCTTGTTTGGCCAAATGGC+AGG | 0.464126 | 5_1:-20105454 | None:intergenic |
| TGATGAGGCGATTGCAGAGT+TGG | 0.469932 | 5_1:+20105479 | Msa0722700:CDS |
| GGCAAAGAAGAAGAAGAAAT+GGG | 0.475683 | 5_1:-20103070 | None:intergenic |
| GCCTGAGGTATGTGTAAGAT+TGG | 0.479850 | 5_1:+20106135 | Msa0722700:CDS |
| AGACGGATTGGATGTGTTGA+TGG | 0.480349 | 5_1:-20105288 | None:intergenic |
| ACCTCTGATTTGCCAGAGGA+TGG | 0.485005 | 5_1:+20105576 | Msa0722700:CDS |
| GCTTCGGTTGGATAACTAAG+AGG | 0.493581 | 5_1:-20106508 | None:intergenic |
| GCTTCTGCCGAGGTGGAAGC+AGG | 0.494681 | 5_1:-20104307 | None:intergenic |
| GAACAAGCTGAAAGATATGA+AGG | 0.498122 | 5_1:+20103198 | Msa0722700:CDS |
| AATCAGAGGTCCAAAGAGTC+AGG | 0.501037 | 5_1:-20105563 | None:intergenic |
| TGGATCTTGTTGTTTGAAAG+AGG | 0.501197 | 5_1:-20102949 | None:intergenic |
| CTTAGTTATCCAACCGAAGC+CGG | 0.505221 | 5_1:+20106511 | Msa0722700:three_prime_UTR |
| TTGGATCTCTGGCCCCAATT+CGG | 0.506761 | 5_1:+20106379 | Msa0722700:CDS |
| GCAGATCTTCCGGCTTCGGT+TGG | 0.512754 | 5_1:-20106520 | None:intergenic |
| GCAATAGAAATAAGTTTGAA+GGG | 0.513057 | 5_1:-20106578 | None:intergenic |
| ACACATACCTCAGGCTCAGC+GGG | 0.513323 | 5_1:-20106127 | None:intergenic |
| GATCAAGAGTTACTGCCAAA+AGG | 0.518570 | 5_1:+20104222 | Msa0722700:CDS |
| GAGAGGAACCTCCTCTCTGT+TGG | 0.523318 | 5_1:+20104100 | Msa0722700:CDS |
| TCTTGAACTCAGCAAGATAC+CGG | 0.525675 | 5_1:-20105084 | None:intergenic |
| TTGGTGCACGAAGAGCTTCA+TGG | 0.527662 | 5_1:+20104137 | Msa0722700:CDS |
| ACTTTACTTGAAAACAGATA+AGG | 0.530220 | 5_1:-20106600 | None:intergenic |
| GAGTTACTGCCAAAAGGTTG+AGG | 0.532495 | 5_1:+20104228 | Msa0722700:CDS |
| TATCCCTTACCTCCATCCTC+TGG | 0.533069 | 5_1:-20105588 | None:intergenic |
| TATGTCTTCAATTGAGCAGA+AGG | 0.534226 | 5_1:+20104165 | Msa0722700:CDS |
| TGGAAGCAGGAACCAGATGC+TGG | 0.540094 | 5_1:-20104294 | None:intergenic |
| GGATGTGATGCGAGAGAGAA+GGG | 0.540129 | 5_1:-20103044 | None:intergenic |
| TCAACACATCCAATCCGTCT+TGG | 0.541520 | 5_1:+20105291 | Msa0722700:CDS |
| TTGGACCTCTGATTTGCCAG+AGG | 0.548600 | 5_1:+20105572 | Msa0722700:CDS |
| AGTGCAAGTCCAAGACGGAT+TGG | 0.548630 | 5_1:-20105300 | None:intergenic |
| AAGACTGAAATCTCAACCGT+TGG | 0.554013 | 5_1:-20102969 | None:intergenic |
| AAGATCAGTGTTTGCAGTGG+CGG | 0.557206 | 5_1:-20105265 | None:intergenic |
| CTAAGATACTCAGTGAAGAT+GGG | 0.557944 | 5_1:+20106413 | Msa0722700:CDS |
| TGCGAGAGAGAAGGGTGAAG+TGG | 0.558298 | 5_1:-20103036 | None:intergenic |
| AAGAAGAAGAAGAAATGGGA+TGG | 0.564884 | 5_1:-20103066 | None:intergenic |
| GAAAATCGAGCTTGTTGTAA+GGG | 0.568605 | 5_1:-20102999 | None:intergenic |
| ACCAATCTTACACATACCTC+AGG | 0.571060 | 5_1:-20106136 | None:intergenic |
| AGAAGAAGAAGAAATGGGAT+GGG | 0.571812 | 5_1:-20103065 | None:intergenic |
| CTATGGATTTGGACTAGACA+AGG | 0.572676 | 5_1:+20106455 | Msa0722700:three_prime_UTR |
| GACTGACCAAGAAAGAAAAG+AGG | 0.574308 | 5_1:+20105105 | Msa0722700:CDS |
| AACATTAGCTTCTGCCGAGG+TGG | 0.575120 | 5_1:-20104314 | None:intergenic |
| CTTGTATGACTCTTCACTCA+AGG | 0.578019 | 5_1:-20105505 | None:intergenic |
| AGCCAAACCCGCTGAGCCTG+AGG | 0.586083 | 5_1:+20106120 | Msa0722700:CDS |
| TTGAACTAACTGTGGAAGAG+AGG | 0.589747 | 5_1:+20104083 | Msa0722700:CDS |
| GAGCAGAAGGAGGAGTCTAA+GGG | 0.589752 | 5_1:+20104178 | Msa0722700:CDS |
| AGGGTGAAGTGGTTATATAG+TGG | 0.591426 | 5_1:-20103025 | None:intergenic |
| CTTGAGTGAAGAGTCATACA+AGG | 0.594010 | 5_1:+20105506 | Msa0722700:CDS |
| GGTTGAATGTATGAAGAAAG+TGG | 0.595766 | 5_1:+20104048 | Msa0722700:CDS |
| GGGATGTGATGCGAGAGAGA+AGG | 0.597278 | 5_1:-20103045 | None:intergenic |
| GCTGCTGAGCAGTCACTGAA+AGG | 0.600437 | 5_1:+20105127 | Msa0722700:CDS |
| CTTCGGTTGGATAACTAAGA+GGG | 0.603101 | 5_1:-20106507 | None:intergenic |
| AAGCTTGGCCAAGTAAACTT+GGG | 0.611139 | 5_1:-20103172 | None:intergenic |
| GTCTTCAATTGAGCAGAAGG+AGG | 0.614518 | 5_1:+20104168 | Msa0722700:CDS |
| TCCATCCTCTGGCAAATCAG+AGG | 0.621846 | 5_1:-20105577 | None:intergenic |
| AGATTATGAACTCTCCTGAA+AGG | 0.626121 | 5_1:+20105346 | Msa0722700:CDS |
| GATACATCACTACCGAATTG+GGG | 0.638690 | 5_1:-20106391 | None:intergenic |
| GAGGAACTCTCCAAAATCTG+TGG | 0.639940 | 5_1:+20104250 | Msa0722700:CDS |
| TTTCAAACAACAAGATCCAA+CGG | 0.644319 | 5_1:+20102953 | Msa0722700:five_prime_UTR |
| TCTGATTTGCCAGAGGATGG+AGG | 0.645454 | 5_1:+20105579 | Msa0722700:CDS |
| ACTTGATGTTGAACTAACTG+TGG | 0.647498 | 5_1:+20104075 | Msa0722700:CDS |
| AGGGCACGAGAGCTATGAAG+TGG | 0.649523 | 5_1:-20106488 | None:intergenic |
| TTACTGCCAAAAGGTTGAGG+AGG | 0.652188 | 5_1:+20104231 | Msa0722700:CDS |
| AGTTGAGTGCAAGTCCAAGA+CGG | 0.652366 | 5_1:-20105305 | None:intergenic |
| TACACATACCTCAGGCTCAG+CGG | 0.668404 | 5_1:-20106128 | None:intergenic |
| GGTCTCTCTCTCTTTCTCAG+CGG | 0.674609 | 5_1:-20103151 | None:intergenic |
| GAAAACATTAGCTTCTGCCG+AGG | 0.676043 | 5_1:-20104317 | None:intergenic |
| TCTGGTTCCTGCTTCCACCT+CGG | 0.676873 | 5_1:+20104300 | Msa0722700:CDS |
| TGGATTTGGACTAGACAAGG+TGG | 0.693750 | 5_1:+20106458 | Msa0722700:three_prime_UTR |
| TGGAAGATCAGTGTTTGCAG+TGG | 0.713574 | 5_1:-20105268 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTTGTTTTTTTTTAAT+TGG | + | chr5_1:20103251-20103270 | Msa0722700:intron | 10.0% |
| !!! | ATTTTATTTCATTTTGATTT+TGG | + | chr5_1:20103454-20103473 | Msa0722700:intron | 10.0% |
| !!! | TTTTATTTCATTTTGATTTT+GGG | + | chr5_1:20103455-20103474 | Msa0722700:intron | 10.0% |
| !!! | TTTTTTGCTTTTAAAAATTA+GGG | + | chr5_1:20105667-20105686 | Msa0722700:intron | 10.0% |
| !!! | TTTATTTCATTTTGATTTTG+GGG | + | chr5_1:20103456-20103475 | Msa0722700:intron | 15.0% |
| !! | AATATGTTATCTAAAAATGT+TGG | + | chr5_1:20103644-20103663 | Msa0722700:intron | 15.0% |
| !! | TGTACATTCATAATAAATTA+TGG | + | chr5_1:20103693-20103712 | Msa0722700:intron | 15.0% |
| !! | AAAAATTACGAGTTTAATAA+TGG | - | chr5_1:20103901-20103920 | None:intergenic | 15.0% |
| !!! | AAATTATACAATTTTCAACA+TGG | - | chr5_1:20103977-20103996 | None:intergenic | 15.0% |
| !!! | AATTTTTAAAAGCAAAAAAC+TGG | - | chr5_1:20105666-20105685 | None:intergenic | 15.0% |
| !!! | GTTTTTTGCTTTTAAAAATT+AGG | + | chr5_1:20105666-20105685 | Msa0722700:intron | 15.0% |
| !! | AAAGTATAGGTATATATTAT+TGG | + | chr5_1:20105744-20105763 | Msa0722700:intron | 15.0% |
| !! | AAGTATAGGTATATATTATT+GGG | + | chr5_1:20105745-20105764 | Msa0722700:intron | 15.0% |
| !!! | AATTCTTTTAAGTGAAAAAA+AGG | + | chr5_1:20106255-20106274 | Msa0722700:intron | 15.0% |
| !!! | ATTCTTTTAAGTGAAAAAAA+GGG | + | chr5_1:20106256-20106275 | Msa0722700:intron | 15.0% |
| !!! | ATAATAATGTCAAATTTTGA+GGG | - | chr5_1:20106333-20106352 | None:intergenic | 15.0% |
| !!! | TTAAAATGTTTTTGTTTTCA+TGG | + | chr5_1:20106706-20106725 | Msa0722700:three_prime_UTR | 15.0% |
| !!! | TGTTTTTTTTGTTGTGATTT+GGG | + | chr5_1:20103321-20103340 | Msa0722700:intron | 20.0% |
| !!! | AAAGATTCGATTTTTAGATT+TGG | + | chr5_1:20103367-20103386 | Msa0722700:intron | 20.0% |
| !!! | AAGATTCGATTTTTAGATTT+GGG | + | chr5_1:20103368-20103387 | Msa0722700:intron | 20.0% |
| !!! | TTATTTCATTTTGATTTTGG+GGG | + | chr5_1:20103457-20103476 | Msa0722700:intron | 20.0% |
| !! | ATCTTCTAATTTGAGAAATT+TGG | + | chr5_1:20103618-20103637 | Msa0722700:intron | 20.0% |
| !! | ATAATAAATTATGGATGTGT+TGG | + | chr5_1:20103702-20103721 | Msa0722700:intron | 20.0% |
| !! | ATTGAACAATTCACTTTAAA+AGG | - | chr5_1:20103775-20103794 | None:intergenic | 20.0% |
| !!! | CTTTGAATTCTAGTTAATTA+TGG | + | chr5_1:20104720-20104739 | Msa0722700:intron | 20.0% |
| !!! | TTTGGTTTATAATACACTTA+CGG | + | chr5_1:20106028-20106047 | Msa0722700:intron | 20.0% |
| !! | CTACTATAAATCTATAACTA+TGG | - | chr5_1:20106209-20106228 | None:intergenic | 20.0% |
| !!! | CATAATAATGTCAAATTTTG+AGG | - | chr5_1:20106334-20106353 | None:intergenic | 20.0% |
| !! | AATTACACTATTCAGTAAAA+CGG | - | chr5_1:20106732-20106751 | None:intergenic | 20.0% |
| !!! | TAACTTGTTTTTCACTTAAA+CGG | - | chr5_1:20106774-20106793 | None:intergenic | 20.0% |
| !! | TTTAAGTGAAAAACAAGTTA+TGG | + | chr5_1:20106774-20106793 | Msa0722700:three_prime_UTR | 20.0% |
| !! | TTAAGTGAAAAACAAGTTAT+GGG | + | chr5_1:20106775-20106794 | Msa0722700:three_prime_UTR | 20.0% |
| !!! | CTGTTTTTTTTGTTGTGATT+TGG | + | chr5_1:20103320-20103339 | Msa0722700:intron | 25.0% |
| ! | ATGTATTCAATATGCAGAAA+TGG | + | chr5_1:20104027-20104046 | Msa0722700:intron | 25.0% |
| ! | GAAGAAAGAGATAAATCTAA+TGG | - | chr5_1:20104423-20104442 | None:intergenic | 25.0% |
| ! | TTATATTCCACTCAAGTTAT+AGG | + | chr5_1:20104668-20104687 | Msa0722700:intron | 25.0% |
| ! | TATATTCCACTCAAGTTATA+GGG | + | chr5_1:20104669-20104688 | Msa0722700:intron | 25.0% |
| ! | AGAATGAGATACTACATTAT+AGG | + | chr5_1:20104748-20104767 | Msa0722700:intron | 25.0% |
| ! | CATTATAGGTTATAGATTAC+AGG | + | chr5_1:20104762-20104781 | Msa0722700:intron | 25.0% |
| ! | GTTAGGAGTTTAATAAACAA+GGG | - | chr5_1:20104829-20104848 | None:intergenic | 25.0% |
| ! | AGTTAGGAGTTTAATAAACA+AGG | - | chr5_1:20104830-20104849 | None:intergenic | 25.0% |
| ! | AAGAGATTTCATATCACATA+AGG | - | chr5_1:20104989-20105008 | None:intergenic | 25.0% |
| !!! | TCACAACTGTTTTGATTATT+AGG | + | chr5_1:20105236-20105255 | Msa0722700:intron | 25.0% |
| !! | GTTTCTATCTTTTGTCTAAA+TGG | + | chr5_1:20105411-20105430 | Msa0722700:intron | 25.0% |
| ! | ATAGGTATATATTATTGGGT+AGG | + | chr5_1:20105749-20105768 | Msa0722700:intron | 25.0% |
| !!! | GTAATTAAGCTCTTGTTATT+TGG | + | chr5_1:20106010-20106029 | Msa0722700:intron | 25.0% |
| ! | GGTAGAAATTAATGAATGTT+TGG | - | chr5_1:20106312-20106331 | None:intergenic | 25.0% |
| !!! | TTTTTAAGCTTTTCTTGCTA+TGG | + | chr5_1:20106438-20106457 | Msa0722700:exon | 25.0% |
| ! | AAAAAAAACACAACAAAGAC+AGG | - | chr5_1:20106547-20106566 | None:intergenic | 25.0% |
| ! | GCAATAGAAATAAGTTTGAA+GGG | - | chr5_1:20106581-20106600 | None:intergenic | 25.0% |
| ! | ACTTTACTTGAAAACAGATA+AGG | - | chr5_1:20106603-20106622 | None:intergenic | 25.0% |
| TTTCAAACAACAAGATCCAA+CGG | + | chr5_1:20102953-20102972 | Msa0722700:five_prime_UTR | 30.0% | |
| !! | AGATCAGTCATTTTCTAGAT+TGG | + | chr5_1:20103410-20103429 | Msa0722700:intron | 30.0% |
| ! | TTATTGATGTGTCATTGTGT+TGG | + | chr5_1:20103544-20103563 | Msa0722700:intron | 30.0% |
| !! | GTTTGATTTGATGCTTAGAT+AGG | + | chr5_1:20103583-20103602 | Msa0722700:intron | 30.0% |
| ATTTGATGCTTAGATAGGAA+AGG | + | chr5_1:20103588-20103607 | Msa0722700:intron | 30.0% | |
| ACAACAGTAATGACTAATGA+TGG | + | chr5_1:20103813-20103832 | Msa0722700:intron | 30.0% | |
| CAACAGTAATGACTAATGAT+GGG | + | chr5_1:20103814-20103833 | Msa0722700:intron | 30.0% | |
| !! | TTACGAGTTTAATAATGGAC+TGG | - | chr5_1:20103896-20103915 | None:intergenic | 30.0% |
| ! | TCGTAATTTTTACCGTATCA+GGG | + | chr5_1:20103910-20103929 | Msa0722700:intron | 30.0% |
| AAATTAATCTTCCCCTGATA+CGG | - | chr5_1:20103925-20103944 | None:intergenic | 30.0% | |
| GTTGGATATAAAAACGTCAT+TGG | + | chr5_1:20104118-20104137 | Msa0722700:CDS | 30.0% | |
| ATTTATCTCTTTCTTCGTTG+TGG | + | chr5_1:20104427-20104446 | Msa0722700:intron | 30.0% | |
| AAACATAGAATCTGTATGAC+TGG | + | chr5_1:20104513-20104532 | Msa0722700:intron | 30.0% | |
| TCCTATTATGAATGAGTGAT+TGG | + | chr5_1:20104635-20104654 | Msa0722700:intron | 30.0% | |
| TCCAATCACTCATTCATAAT+AGG | - | chr5_1:20104639-20104658 | None:intergenic | 30.0% | |
| TATAGGGTTTCAGATAAAGA+TGG | + | chr5_1:20104685-20104704 | Msa0722700:intron | 30.0% | |
| ! | TTCACTGTTTGATTCTAGTT+AGG | - | chr5_1:20104846-20104865 | None:intergenic | 30.0% |
| ATCAAACAGTGAAGAAATCA+TGG | + | chr5_1:20104853-20104872 | Msa0722700:intron | 30.0% | |
| ATGGTAAGGACTACAAAATA+TGG | + | chr5_1:20104872-20104891 | Msa0722700:intron | 30.0% | |
| TGTGATATGAAATCTCTTAC+TGG | + | chr5_1:20104991-20105010 | Msa0722700:intron | 30.0% | |
| AATGAAGCATAAGGAAATCA+GGG | - | chr5_1:20105041-20105060 | None:intergenic | 30.0% | |
| AAATGAAGCATAAGGAAATC+AGG | - | chr5_1:20105042-20105061 | None:intergenic | 30.0% | |
| TTTGTATTTCAGCACTAAAG+TGG | + | chr5_1:20105158-20105177 | Msa0722700:intron | 30.0% | |
| ! | TCTATCTTTTGTCTAAATGG+TGG | + | chr5_1:20105414-20105433 | Msa0722700:intron | 30.0% |
| ATTAAAAATCTCGCATCTCA+GGG | - | chr5_1:20105700-20105719 | None:intergenic | 30.0% | |
| ! | ACCAAACACATTGAAAGTAT+AGG | + | chr5_1:20105731-20105750 | Msa0722700:intron | 30.0% |
| ACCTATACTTTCAATGTGTT+TGG | - | chr5_1:20105735-20105754 | None:intergenic | 30.0% | |
| GTATATATTATTGGGTAGGT+TGG | + | chr5_1:20105753-20105772 | Msa0722700:intron | 30.0% | |
| !!! | CTAATTTTTTGACAAGGTTG+GGG | - | chr5_1:20105878-20105897 | None:intergenic | 30.0% |
| !!! | CCTAATTTTTTGACAAGGTT+GGG | - | chr5_1:20105879-20105898 | None:intergenic | 30.0% |
| !!! | TCCTAATTTTTTGACAAGGT+TGG | - | chr5_1:20105880-20105899 | None:intergenic | 30.0% |
| !!! | CTCATCCTAATTTTTTGACA+AGG | - | chr5_1:20105884-20105903 | None:intergenic | 30.0% |
| ! | ACAATATGACTAAGGTTTTC+TGG | - | chr5_1:20105946-20105965 | None:intergenic | 30.0% |
| ! | TTCTGGAAACAATATGACTA+AGG | - | chr5_1:20105954-20105973 | None:intergenic | 30.0% |
| GCTTAATTACACAATTAACC+AGG | - | chr5_1:20106000-20106019 | None:intergenic | 30.0% | |
| AAAGGTTAATACTCTCTTAC+AGG | + | chr5_1:20106073-20106092 | Msa0722700:intron | 30.0% | |
| !! | CAGCATTGATAAGATTTCAT+TGG | + | chr5_1:20106360-20106379 | Msa0722700:intron | 30.0% |
| ATAAGATTTCATTGGATCTC+TGG | + | chr5_1:20106368-20106387 | Msa0722700:CDS | 30.0% | |
| GGCAATAGAAATAAGTTTGA+AGG | - | chr5_1:20106582-20106601 | None:intergenic | 30.0% | |
| TGCAGAAAAATGTGCTTAAA+AGG | - | chr5_1:20106658-20106677 | None:intergenic | 30.0% | |
| ! | TTTTTCACTTAAACGGATCA+TGG | - | chr5_1:20106767-20106786 | None:intergenic | 30.0% |
| ! | GGGAAATACATTTTCTTAAC+TGG | + | chr5_1:20106795-20106814 | Msa0722700:three_prime_UTR | 30.0% |
| !! | TGGATCTTGTTGTTTGAAAG+AGG | - | chr5_1:20102952-20102971 | None:intergenic | 35.0% |
| !! | GAAAATCGAGCTTGTTGTAA+GGG | - | chr5_1:20103002-20103021 | None:intergenic | 35.0% |
| AGAAGAAGAAGAAATGGGAT+GGG | - | chr5_1:20103068-20103087 | None:intergenic | 35.0% | |
| AAGAAGAAGAAGAAATGGGA+TGG | - | chr5_1:20103069-20103088 | None:intergenic | 35.0% | |
| GGCAAAGAAGAAGAAGAAAT+GGG | - | chr5_1:20103073-20103092 | None:intergenic | 35.0% | |
| AGGCAAAGAAGAAGAAGAAA+TGG | - | chr5_1:20103074-20103093 | None:intergenic | 35.0% | |
| ATCAGAGAAAAACTCAAAGG+AGG | - | chr5_1:20103094-20103113 | None:intergenic | 35.0% | |
| GAGATCAGAGAAAAACTCAA+AGG | - | chr5_1:20103097-20103116 | None:intergenic | 35.0% | |
| GAACAAGCTGAAAGATATGA+AGG | + | chr5_1:20103198-20103217 | Msa0722700:CDS | 35.0% | |
| !!! | TTTCATTTTGATTTTGGGGG+TGG | + | chr5_1:20103460-20103479 | Msa0722700:intron | 35.0% |
| ATTTCAACGACGCAATCAAA+GGG | - | chr5_1:20103735-20103754 | None:intergenic | 35.0% | |
| AATTTCAACGACGCAATCAA+AGG | - | chr5_1:20103736-20103755 | None:intergenic | 35.0% | |
| ! | CTAATGATGGGAATTATGCT+TGG | + | chr5_1:20103826-20103845 | Msa0722700:intron | 35.0% |
| TTGGGTCTATAACATCACTT+TGG | - | chr5_1:20103868-20103887 | None:intergenic | 35.0% | |
| GTGATGTTATAGACCCAAAT+TGG | + | chr5_1:20103870-20103889 | Msa0722700:intron | 35.0% | |
| !! | AATAATGGACTGGCCAATTT+GGG | - | chr5_1:20103886-20103905 | None:intergenic | 35.0% |
| !! | TAATAATGGACTGGCCAATT+TGG | - | chr5_1:20103887-20103906 | None:intergenic | 35.0% |
| ! | CTCGTAATTTTTACCGTATC+AGG | + | chr5_1:20103909-20103928 | Msa0722700:intron | 35.0% |
| ! | CGTAATTTTTACCGTATCAG+GGG | + | chr5_1:20103911-20103930 | Msa0722700:intron | 35.0% |
| GGTTGAATGTATGAAGAAAG+TGG | + | chr5_1:20104048-20104067 | Msa0722700:CDS | 35.0% | |
| ACTTGATGTTGAACTAACTG+TGG | + | chr5_1:20104075-20104094 | Msa0722700:CDS | 35.0% | |
| ! | TTTTATATCCAACAGAGAGG+AGG | - | chr5_1:20104111-20104130 | None:intergenic | 35.0% |
| ! | CGTTTTTATATCCAACAGAG+AGG | - | chr5_1:20104114-20104133 | None:intergenic | 35.0% |
| TATGTCTTCAATTGAGCAGA+AGG | + | chr5_1:20104165-20104184 | Msa0722700:CDS | 35.0% | |
| AAATCTAATGGCCAACAAGT+CGG | - | chr5_1:20104411-20104430 | None:intergenic | 35.0% | |
| AGGTGGATAACAAATATGCA+AGG | - | chr5_1:20104568-20104587 | None:intergenic | 35.0% | |
| !! | TTGCATATTTGTTATCCACC+TGG | + | chr5_1:20104567-20104586 | Msa0722700:intron | 35.0% |
| ACAGTGAAGAAATCATGGTA+AGG | + | chr5_1:20104858-20104877 | Msa0722700:intron | 35.0% | |
| GGACTACAAAATATGGAAAC+TGG | + | chr5_1:20104879-20104898 | Msa0722700:intron | 35.0% | |
| AGATTATGAACTCTCCTGAA+AGG | + | chr5_1:20105346-20105365 | Msa0722700:CDS | 35.0% | |
| ! | ATGGTGGTGATAAAACTTAC+AGG | + | chr5_1:20105430-20105449 | Msa0722700:intron | 35.0% |
| ! | TGGTGGTGATAAAACTTACA+GGG | + | chr5_1:20105431-20105450 | Msa0722700:intron | 35.0% |
| GATTAAAAATCTCGCATCTC+AGG | - | chr5_1:20105701-20105720 | None:intergenic | 35.0% | |
| ! | GAGATGCGAGATTTTTAATC+TGG | + | chr5_1:20105701-20105720 | Msa0722700:intron | 35.0% |
| GATTACTCTTGTGGTGATTA+GGG | - | chr5_1:20105833-20105852 | None:intergenic | 35.0% | |
| TGATTACTCTTGTGGTGATT+AGG | - | chr5_1:20105834-20105853 | None:intergenic | 35.0% | |
| CCCAACCTTGTCAAAAAATT+AGG | + | chr5_1:20105876-20105895 | Msa0722700:intron | 35.0% | |
| !! | AAAGAAACTGTGCTTGCTAT+TGG | + | chr5_1:20105911-20105930 | Msa0722700:intron | 35.0% |
| TCATGAGAAGAAACTCATTC+TGG | - | chr5_1:20105971-20105990 | None:intergenic | 35.0% | |
| TTAATACTCTCTTACAGGTG+AGG | + | chr5_1:20106078-20106097 | Msa0722700:intron | 35.0% | |
| !! | TTTGGCTTCTTCAGCTTTTA+TGG | - | chr5_1:20106107-20106126 | None:intergenic | 35.0% |
| !! | GGTATGTGTAAGATTGGTTT+CGG | + | chr5_1:20106141-20106160 | Msa0722700:CDS | 35.0% |
| AGATACATCACTACCGAATT+GGG | - | chr5_1:20106395-20106414 | None:intergenic | 35.0% | |
| TAGATACATCACTACCGAAT+TGG | - | chr5_1:20106396-20106415 | None:intergenic | 35.0% | |
| ! | TCTAAGATACTCAGTGAAGA+TGG | + | chr5_1:20106412-20106431 | Msa0722700:CDS | 35.0% |
| CTAAGATACTCAGTGAAGAT+GGG | + | chr5_1:20106413-20106432 | Msa0722700:CDS | 35.0% | |
| !! | AGCTTTTCTTGCTATGGATT+TGG | + | chr5_1:20106444-20106463 | Msa0722700:exon | 35.0% |
| TGCATTCATTGAGTCTGAAT+TGG | + | chr5_1:20106674-20106693 | Msa0722700:three_prime_UTR | 35.0% | |
| AAGACTGAAATCTCAACCGT+TGG | - | chr5_1:20102972-20102991 | None:intergenic | 40.0% | |
| !! | CGAAAATCGAGCTTGTTGTA+AGG | - | chr5_1:20103003-20103022 | None:intergenic | 40.0% |
| AGGGTGAAGTGGTTATATAG+TGG | - | chr5_1:20103028-20103047 | None:intergenic | 40.0% | |
| AAGCTTGGCCAAGTAAACTT+GGG | - | chr5_1:20103175-20103194 | None:intergenic | 40.0% | |
| AAAGCTTGGCCAAGTAAACT+TGG | - | chr5_1:20103176-20103195 | None:intergenic | 40.0% | |
| ! | TTCAGCTTGTTCAGAAAGCT+TGG | - | chr5_1:20103190-20103209 | None:intergenic | 40.0% |
| ! | GTTCTTGCTGATGCATTGAT+TGG | + | chr5_1:20103482-20103501 | Msa0722700:intron | 40.0% |
| GCTTAGATAGGAAAGGAAAC+TGG | + | chr5_1:20103595-20103614 | Msa0722700:intron | 40.0% | |
| TTGAACTAACTGTGGAAGAG+AGG | + | chr5_1:20104083-20104102 | Msa0722700:CDS | 40.0% | |
| GATCAAGAGTTACTGCCAAA+AGG | + | chr5_1:20104222-20104241 | Msa0722700:CDS | 40.0% | |
| ! | CAGAATGTCACCACAGATTT+TGG | - | chr5_1:20104263-20104282 | None:intergenic | 40.0% |
| GACAATTATTGACCAGCATC+TGG | + | chr5_1:20104282-20104301 | Msa0722700:CDS | 40.0% | |
| ! | TCAAATCCTTTCCGACTTGT+TGG | + | chr5_1:20104397-20104416 | Msa0722700:intron | 40.0% |
| CATAGAATCTGTATGACTGG+TGG | + | chr5_1:20104516-20104535 | Msa0722700:intron | 40.0% | |
| !! | CATATTTGTTATCCACCTGG+TGG | + | chr5_1:20104570-20104589 | Msa0722700:intron | 40.0% |
| CCAGGACTTAATCATGAAAC+GGG | - | chr5_1:20104603-20104622 | None:intergenic | 40.0% | |
| GCCAGGACTTAATCATGAAA+CGG | - | chr5_1:20104604-20104623 | None:intergenic | 40.0% | |
| CTGAAACCCTATAACTTGAG+TGG | - | chr5_1:20104678-20104697 | None:intergenic | 40.0% | |
| CCTGCATCAAATGAAGCATA+AGG | - | chr5_1:20105050-20105069 | None:intergenic | 40.0% | |
| CCTTATGCTTCATTTGATGC+AGG | + | chr5_1:20105047-20105066 | Msa0722700:intron | 40.0% | |
| TGCTTCATTTGATGCAGGAA+AGG | + | chr5_1:20105052-20105071 | Msa0722700:intron | 40.0% | |
| GCAGGAAAGGTGATTATTTC+CGG | + | chr5_1:20105065-20105084 | Msa0722700:intron | 40.0% | |
| TCTTGAACTCAGCAAGATAC+CGG | - | chr5_1:20105087-20105106 | None:intergenic | 40.0% | |
| GACTGACCAAGAAAGAAAAG+AGG | + | chr5_1:20105105-20105124 | Msa0722700:CDS | 40.0% | |
| TCTCCTGAAAGGTAAGCAAT+CGG | + | chr5_1:20105357-20105376 | Msa0722700:intron | 40.0% | |
| ! | ATCGGTTCTCATACTTAGCA+TGG | + | chr5_1:20105375-20105394 | Msa0722700:intron | 40.0% |
| ! | CAAAAGCTTGTTTGGCCAAA+TGG | - | chr5_1:20105461-20105480 | None:intergenic | 40.0% |
| CTTGTATGACTCTTCACTCA+AGG | - | chr5_1:20105508-20105527 | None:intergenic | 40.0% | |
| CTTGAGTGAAGAGTCATACA+AGG | + | chr5_1:20105506-20105525 | Msa0722700:CDS | 40.0% | |
| CAAAAAACTGGAGAGCTTGA+AGG | - | chr5_1:20105654-20105673 | None:intergenic | 40.0% | |
| TTGGCATTCCATATCCTAGT+GGG | + | chr5_1:20105772-20105791 | Msa0722700:intron | 40.0% | |
| ! | TTTTTGACAAGGTTGGGGTA+AGG | - | chr5_1:20105873-20105892 | None:intergenic | 40.0% |
| TTCTTCTCATGAATCGTTCC+TGG | + | chr5_1:20105979-20105998 | Msa0722700:intron | 40.0% | |
| ! | TCCTACTAGAGAGGTTCTAA+AGG | + | chr5_1:20106055-20106074 | Msa0722700:intron | 40.0% |
| !! | ACCTTTAGAACCTCTCTAGT+AGG | - | chr5_1:20106059-20106078 | None:intergenic | 40.0% |
| ACCAATCTTACACATACCTC+AGG | - | chr5_1:20106139-20106158 | None:intergenic | 40.0% | |
| GATACATCACTACCGAATTG+GGG | - | chr5_1:20106394-20106413 | None:intergenic | 40.0% | |
| ! | CTATGGATTTGGACTAGACA+AGG | + | chr5_1:20106455-20106474 | Msa0722700:three_prime_UTR | 40.0% |
| CTTCGGTTGGATAACTAAGA+GGG | - | chr5_1:20106510-20106529 | None:intergenic | 40.0% | |
| GAGAGAGACCCAAGTTTACT+TGG | + | chr5_1:20103164-20103183 | Msa0722700:CDS | 45.0% | |
| GTCTTCAATTGAGCAGAAGG+AGG | + | chr5_1:20104168-20104187 | Msa0722700:CDS | 45.0% | |
| GAGTTACTGCCAAAAGGTTG+AGG | + | chr5_1:20104228-20104247 | Msa0722700:CDS | 45.0% | |
| TTACTGCCAAAAGGTTGAGG+AGG | + | chr5_1:20104231-20104250 | Msa0722700:CDS | 45.0% | |
| ! | AGAGTTCCTCCTCAACCTTT+TGG | - | chr5_1:20104240-20104259 | None:intergenic | 45.0% |
| GAGGAACTCTCCAAAATCTG+TGG | + | chr5_1:20104250-20104269 | Msa0722700:CDS | 45.0% | |
| ! | GAAAACATTAGCTTCTGCCG+AGG | - | chr5_1:20104320-20104339 | None:intergenic | 45.0% |
| TAATGGCCAACAAGTCGGAA+AGG | - | chr5_1:20104406-20104425 | None:intergenic | 45.0% | |
| CCCGTTTCATGATTAAGTCC+TGG | + | chr5_1:20104600-20104619 | Msa0722700:intron | 45.0% | |
| !! | TGATTAAGTCCTGGCTCTAC+AGG | + | chr5_1:20104609-20104628 | Msa0722700:intron | 45.0% |
| !! | GATTAAGTCCTGGCTCTACA+GGG | + | chr5_1:20104610-20104629 | Msa0722700:intron | 45.0% |
| !! | TTACTGGCTCACACGTACTT+TGG | + | chr5_1:20105007-20105026 | Msa0722700:intron | 45.0% |
| ! | CAGCAGCCTCTTTTCTTTCT+TGG | - | chr5_1:20105114-20105133 | None:intergenic | 45.0% |
| AAGATCAGTGTTTGCAGTGG+CGG | - | chr5_1:20105268-20105287 | None:intergenic | 45.0% | |
| TGGAAGATCAGTGTTTGCAG+TGG | - | chr5_1:20105271-20105290 | None:intergenic | 45.0% | |
| !! | AGACGGATTGGATGTGTTGA+TGG | - | chr5_1:20105291-20105310 | None:intergenic | 45.0% |
| TCAACACATCCAATCCGTCT+TGG | + | chr5_1:20105291-20105310 | Msa0722700:CDS | 45.0% | |
| AGTTGAGTGCAAGTCCAAGA+CGG | - | chr5_1:20105308-20105327 | None:intergenic | 45.0% | |
| GAACCGATTGCTTACCTTTC+AGG | - | chr5_1:20105363-20105382 | None:intergenic | 45.0% | |
| ! | GGCCAAACAAGCTTTTGATG+AGG | + | chr5_1:20105464-20105483 | Msa0722700:CDS | 45.0% |
| ! | CGCCTCATCAAAAGCTTGTT+TGG | - | chr5_1:20105469-20105488 | None:intergenic | 45.0% |
| TGAGAGACAACCTGACTCTT+TGG | + | chr5_1:20105553-20105572 | Msa0722700:CDS | 45.0% | |
| AATCAGAGGTCCAAAGAGTC+AGG | - | chr5_1:20105566-20105585 | None:intergenic | 45.0% | |
| GTTGGCATTCCATATCCTAG+TGG | + | chr5_1:20105771-20105790 | Msa0722700:intron | 45.0% | |
| TGGCATTCCATATCCTAGTG+GGG | + | chr5_1:20105773-20105792 | Msa0722700:intron | 45.0% | |
| CATTTGTCCCCACTAGGATA+TGG | - | chr5_1:20105783-20105802 | None:intergenic | 45.0% | |
| TGATTAGGGATGGGTCAACT+TGG | - | chr5_1:20105819-20105838 | None:intergenic | 45.0% | |
| CTCTTGTGGTGATTAGGGAT+GGG | - | chr5_1:20105828-20105847 | None:intergenic | 45.0% | |
| ACTCTTGTGGTGATTAGGGA+TGG | - | chr5_1:20105829-20105848 | None:intergenic | 45.0% | |
| CGAGTGGATGATTACTCTTG+TGG | - | chr5_1:20105842-20105861 | None:intergenic | 45.0% | |
| GGGTAAGGATACAAATCGAG+TGG | - | chr5_1:20105858-20105877 | None:intergenic | 45.0% | |
| GCCTGAGGTATGTGTAAGAT+TGG | + | chr5_1:20106135-20106154 | Msa0722700:CDS | 45.0% | |
| ! | TGGATTTGGACTAGACAAGG+TGG | + | chr5_1:20106458-20106477 | Msa0722700:three_prime_UTR | 45.0% |
| GGACTAGACAAGGTGGAATT+TGG | + | chr5_1:20106465-20106484 | Msa0722700:three_prime_UTR | 45.0% | |
| GCTTCGGTTGGATAACTAAG+AGG | - | chr5_1:20106511-20106530 | None:intergenic | 45.0% | |
| CTTAGTTATCCAACCGAAGC+CGG | + | chr5_1:20106511-20106530 | Msa0722700:three_prime_UTR | 45.0% | |
| AAAGACAGGTGCAGATCTTC+CGG | - | chr5_1:20106533-20106552 | None:intergenic | 45.0% | |
| GGATGTGATGCGAGAGAGAA+GGG | - | chr5_1:20103047-20103066 | None:intergenic | 50.0% | |
| GGTCTCTCTCTCTTTCTCAG+CGG | - | chr5_1:20103154-20103173 | None:intergenic | 50.0% | |
| TTGGTGCACGAAGAGCTTCA+TGG | + | chr5_1:20104137-20104156 | Msa0722700:CDS | 50.0% | |
| TGAGCAGAAGGAGGAGTCTA+AGG | + | chr5_1:20104177-20104196 | Msa0722700:CDS | 50.0% | |
| GAGCAGAAGGAGGAGTCTAA+GGG | + | chr5_1:20104178-20104197 | Msa0722700:CDS | 50.0% | |
| ! | AACATTAGCTTCTGCCGAGG+TGG | - | chr5_1:20104317-20104336 | None:intergenic | 50.0% |
| AGTGCAAGTCCAAGACGGAT+TGG | - | chr5_1:20105303-20105322 | None:intergenic | 50.0% | |
| AACTTACAGGGCCTGCCATT+TGG | + | chr5_1:20105443-20105462 | Msa0722700:intron | 50.0% | |
| ! | AGCTTGTTTGGCCAAATGGC+AGG | - | chr5_1:20105457-20105476 | None:intergenic | 50.0% |
| TGATGAGGCGATTGCAGAGT+TGG | + | chr5_1:20105479-20105498 | Msa0722700:CDS | 50.0% | |
| ! | TTGGACCTCTGATTTGCCAG+AGG | + | chr5_1:20105572-20105591 | Msa0722700:CDS | 50.0% |
| ! | ACCTCTGATTTGCCAGAGGA+TGG | + | chr5_1:20105576-20105595 | Msa0722700:CDS | 50.0% |
| TCCATCCTCTGGCAAATCAG+AGG | - | chr5_1:20105580-20105599 | None:intergenic | 50.0% | |
| ! | TCTGATTTGCCAGAGGATGG+AGG | + | chr5_1:20105579-20105598 | Msa0722700:CDS | 50.0% |
| TTTGCCAGAGGATGGAGGTA+AGG | + | chr5_1:20105584-20105603 | Msa0722700:intron | 50.0% | |
| TTGCCAGAGGATGGAGGTAA+GGG | + | chr5_1:20105585-20105604 | Msa0722700:intron | 50.0% | |
| TATCCCTTACCTCCATCCTC+TGG | - | chr5_1:20105591-20105610 | None:intergenic | 50.0% | |
| ! | GGGTCAACTTGGTGGACAAT+GGG | - | chr5_1:20105808-20105827 | None:intergenic | 50.0% |
| ! | TGGGTCAACTTGGTGGACAA+TGG | - | chr5_1:20105809-20105828 | None:intergenic | 50.0% |
| TTAGGGATGGGTCAACTTGG+TGG | - | chr5_1:20105816-20105835 | None:intergenic | 50.0% | |
| TACACATACCTCAGGCTCAG+CGG | - | chr5_1:20106131-20106150 | None:intergenic | 50.0% | |
| TTGGATCTCTGGCCCCAATT+CGG | + | chr5_1:20106379-20106398 | Msa0722700:CDS | 50.0% | |
| TGCGAGAGAGAAGGGTGAAG+TGG | - | chr5_1:20103039-20103058 | None:intergenic | 55.0% | |
| GGGATGTGATGCGAGAGAGA+AGG | - | chr5_1:20103048-20103067 | None:intergenic | 55.0% | |
| GAGAGGAACCTCCTCTCTGT+TGG | + | chr5_1:20104100-20104119 | Msa0722700:CDS | 55.0% | |
| TGGAAGCAGGAACCAGATGC+TGG | - | chr5_1:20104297-20104316 | None:intergenic | 55.0% | |
| ! | TCTGGTTCCTGCTTCCACCT+CGG | + | chr5_1:20104300-20104319 | Msa0722700:CDS | 55.0% |
| ATAGGACTCCCTGTAGAGCC+AGG | - | chr5_1:20104621-20104640 | None:intergenic | 55.0% | |
| GCTGCTGAGCAGTCACTGAA+AGG | + | chr5_1:20105127-20105146 | Msa0722700:CDS | 55.0% | |
| !! | TGGGAGCATTTGTCCCCACT+AGG | - | chr5_1:20105789-20105808 | None:intergenic | 55.0% |
| TACGGCTGCTCCTACTAGAG+AGG | + | chr5_1:20106046-20106065 | Msa0722700:intron | 55.0% | |
| ACACATACCTCAGGCTCAGC+GGG | - | chr5_1:20106130-20106149 | None:intergenic | 55.0% | |
| AGGGCACGAGAGCTATGAAG+TGG | - | chr5_1:20106491-20106510 | None:intergenic | 55.0% | |
| AGGTGCAGATCTTCCGGCTT+CGG | - | chr5_1:20106527-20106546 | None:intergenic | 55.0% | |
| GAAACGGGTGCTCATCCACC+AGG | - | chr5_1:20104588-20104607 | None:intergenic | 60.0% | |
| ! | TACCTCAGGCTCAGCGGGTT+TGG | - | chr5_1:20106125-20106144 | None:intergenic | 60.0% |
| GCAGATCTTCCGGCTTCGGT+TGG | - | chr5_1:20106523-20106542 | None:intergenic | 60.0% | |
| GCTTCTGCCGAGGTGGAAGC+AGG | - | chr5_1:20104310-20104329 | None:intergenic | 65.0% | |
| ACGGGTGCTCATCCACCAGG+TGG | - | chr5_1:20104585-20104604 | None:intergenic | 65.0% | |
| AGCCAAACCCGCTGAGCCTG+AGG | + | chr5_1:20106120-20106139 | Msa0722700:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 20102933 | 20106853 | 20102933 | ID=Msa0722700;Name=Msa0722700 |
| chr5_1 | mRNA | 20102933 | 20106853 | 20102933 | ID=Msa0722700-mRNA-1;Parent=Msa0722700;Name=Msa0722700-mRNA-1;_AED=0.09;_eAED=0.09;_QI=214|0.83|0.85|1|1|1|7|409|301 |
| chr5_1 | exon | 20102933 | 20103219 | 20102933 | ID=Msa0722700-mRNA-1:exon:7612;Parent=Msa0722700-mRNA-1 |
| chr5_1 | exon | 20104044 | 20104350 | 20104044 | ID=Msa0722700-mRNA-1:exon:7613;Parent=Msa0722700-mRNA-1 |
| chr5_1 | exon | 20105069 | 20105156 | 20105069 | ID=Msa0722700-mRNA-1:exon:7614;Parent=Msa0722700-mRNA-1 |
| chr5_1 | exon | 20105258 | 20105367 | 20105258 | ID=Msa0722700-mRNA-1:exon:7615;Parent=Msa0722700-mRNA-1 |
| chr5_1 | exon | 20105452 | 20105600 | 20105452 | ID=Msa0722700-mRNA-1:exon:7616;Parent=Msa0722700-mRNA-1 |
| chr5_1 | exon | 20106095 | 20106191 | 20106095 | ID=Msa0722700-mRNA-1:exon:7617;Parent=Msa0722700-mRNA-1 |
| chr5_1 | exon | 20106363 | 20106853 | 20106363 | ID=Msa0722700-mRNA-1:exon:7618;Parent=Msa0722700-mRNA-1 |
| chr5_1 | five_prime_UTR | 20102933 | 20103146 | 20102933 | ID=Msa0722700-mRNA-1:five_prime_utr;Parent=Msa0722700-mRNA-1 |
| chr5_1 | CDS | 20103147 | 20103219 | 20103147 | ID=Msa0722700-mRNA-1:cds;Parent=Msa0722700-mRNA-1 |
| chr5_1 | CDS | 20104044 | 20104350 | 20104044 | ID=Msa0722700-mRNA-1:cds;Parent=Msa0722700-mRNA-1 |
| chr5_1 | CDS | 20105069 | 20105156 | 20105069 | ID=Msa0722700-mRNA-1:cds;Parent=Msa0722700-mRNA-1 |
| chr5_1 | CDS | 20105258 | 20105367 | 20105258 | ID=Msa0722700-mRNA-1:cds;Parent=Msa0722700-mRNA-1 |
| chr5_1 | CDS | 20105452 | 20105600 | 20105452 | ID=Msa0722700-mRNA-1:cds;Parent=Msa0722700-mRNA-1 |
| chr5_1 | CDS | 20106095 | 20106191 | 20106095 | ID=Msa0722700-mRNA-1:cds;Parent=Msa0722700-mRNA-1 |
| chr5_1 | CDS | 20106363 | 20106444 | 20106363 | ID=Msa0722700-mRNA-1:cds;Parent=Msa0722700-mRNA-1 |
| chr5_1 | three_prime_UTR | 20106445 | 20106853 | 20106445 | ID=Msa0722700-mRNA-1:three_prime_utr;Parent=Msa0722700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
