Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856610 | KYP58465.1 | 100.000 | 136 | 0 | 0 | 1 | 136 | 5 | 140 | 1.76e-92 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856610 | sp|P68428|H32_WHEAT | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 5.15e-95 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856610 | A0A452Z7H5 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 3.73e-93 | 278 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0856610 | 0.843198 | 1.623465e-58 | -8.615850e-47 |
| Msa0018920 | Msa0856610 | 0.812796 | 3.540908e-51 | -8.615850e-47 |
| Msa0027800 | Msa0856610 | 0.805205 | 1.493383e-49 | -8.615850e-47 |
| Msa0030070 | Msa0856610 | 0.857611 | 1.450797e-62 | -8.615850e-47 |
| Msa0041910 | Msa0856610 | 0.807770 | 4.297002e-50 | -8.615850e-47 |
| Msa0049450 | Msa0856610 | 0.809357 | 1.969439e-50 | -8.615850e-47 |
| Msa0050530 | Msa0856610 | 0.859647 | 3.579798e-63 | -8.615850e-47 |
| Msa0058130 | Msa0856610 | 0.816609 | 5.063195e-52 | -8.615850e-47 |
| Msa0078130 | Msa0856610 | 0.822900 | 1.849429e-53 | -8.615850e-47 |
| Msa0079410 | Msa0856610 | 0.834315 | 3.217865e-56 | -8.615850e-47 |
| Msa0090440 | Msa0856610 | 0.837304 | 5.626655e-57 | -8.615850e-47 |
| Msa0091350 | Msa0856610 | 0.827895 | 1.214757e-54 | -8.615850e-47 |
| Msa0094180 | Msa0856610 | 0.821841 | 3.258347e-53 | -8.615850e-47 |
| Msa0100600 | Msa0856610 | 0.835908 | 1.275865e-56 | -8.615850e-47 |
| Msa0100890 | Msa0856610 | 0.851428 | 8.932234e-61 | -8.615850e-47 |
| Msa0106630 | Msa0856610 | 0.810802 | 9.614630e-51 | -8.615850e-47 |
| Msa0608350 | Msa0856610 | 0.809627 | 1.723236e-50 | -8.615850e-47 |
| Msa0612410 | Msa0856610 | 0.802692 | 4.973654e-49 | -8.615850e-47 |
| Msa0618840 | Msa0856610 | 0.817546 | 3.117517e-52 | -8.615850e-47 |
| Msa0618990 | Msa0856610 | 0.819901 | 9.103125e-53 | -8.615850e-47 |
| Msa0620500 | Msa0856610 | 0.847542 | 1.082969e-59 | -8.615850e-47 |
| Msa0640800 | Msa0856610 | 0.835758 | 1.392929e-56 | -8.615850e-47 |
| Msa0644440 | Msa0856610 | 0.818916 | 1.527239e-52 | -8.615850e-47 |
| Msa0645340 | Msa0856610 | 0.804073 | 2.572774e-49 | -8.615850e-47 |
| Msa0647440 | Msa0856610 | 0.864010 | 1.653034e-64 | -8.615850e-47 |
| Msa0648760 | Msa0856610 | 0.834629 | 2.683699e-56 | -8.615850e-47 |
| Msa0654740 | Msa0856610 | 0.803755 | 2.996461e-49 | -8.615850e-47 |
| Msa0657210 | Msa0856610 | 0.808942 | 2.417270e-50 | -8.615850e-47 |
| Msa0659200 | Msa0856610 | 0.828123 | 1.070999e-54 | -8.615850e-47 |
| Msa0663290 | Msa0856610 | 0.865924 | 4.147071e-65 | -8.615850e-47 |
| Msa0664070 | Msa0856610 | 0.864689 | 1.014832e-64 | -8.615850e-47 |
| Msa0684750 | Msa0856610 | 0.872624 | 2.756494e-67 | -8.615850e-47 |
| Msa0688380 | Msa0856610 | 0.813888 | 2.037722e-51 | -8.615850e-47 |
| Msa0688620 | Msa0856610 | 0.832728 | 8.012159e-56 | -8.615850e-47 |
| Msa0689830 | Msa0856610 | 0.835688 | 1.450903e-56 | -8.615850e-47 |
| Msa0690320 | Msa0856610 | 0.843266 | 1.557028e-58 | -8.615850e-47 |
| Msa0691270 | Msa0856610 | 0.814915 | 1.207863e-51 | -8.615850e-47 |
| Msa0701250 | Msa0856610 | 0.825212 | 5.300933e-54 | -8.615850e-47 |
| Msa0705140 | Msa0856610 | 0.846959 | 1.564872e-59 | -8.615850e-47 |
| Msa0705180 | Msa0856610 | 0.843036 | 1.793184e-58 | -8.615850e-47 |
| Msa0707260 | Msa0856610 | 0.832303 | 1.021097e-55 | -8.615850e-47 |
| Msa0708980 | Msa0856610 | 0.823337 | 1.462793e-53 | -8.615850e-47 |
| Msa0717900 | Msa0856610 | 0.824336 | 8.531954e-54 | -8.615850e-47 |
| Msa0720280 | Msa0856610 | 0.862981 | 3.447917e-64 | -8.615850e-47 |
| Msa0722700 | Msa0856610 | 0.808574 | 2.897506e-50 | -8.615850e-47 |
| Msa0737130 | Msa0856610 | 0.835938 | 1.253927e-56 | -8.615850e-47 |
| Msa0737140 | Msa0856610 | 0.884719 | 1.507827e-71 | -8.615850e-47 |
| Msa0749190 | Msa0856610 | 0.832755 | 7.886285e-56 | -8.615850e-47 |
| Msa0750520 | Msa0856610 | 0.833138 | 6.335929e-56 | -8.615850e-47 |
| Msa0751250 | Msa0856610 | 0.825993 | 3.461132e-54 | -8.615850e-47 |
| Msa0751720 | Msa0856610 | 0.827302 | 1.686053e-54 | -8.615850e-47 |
| Msa0767280 | Msa0856610 | 0.817348 | 3.454252e-52 | -8.615850e-47 |
| Msa0771910 | Msa0856610 | 0.819688 | 1.018325e-52 | -8.615850e-47 |
| Msa0803140 | Msa0856610 | 0.862939 | 3.550918e-64 | -8.615850e-47 |
| Msa0816080 | Msa0856610 | 0.843699 | 1.193167e-58 | -8.615850e-47 |
| Msa0816230 | Msa0856610 | 0.851242 | 1.008159e-60 | -8.615850e-47 |
| Msa0831620 | Msa0856610 | 0.806718 | 7.178439e-50 | -8.615850e-47 |
| Msa0831820 | Msa0856610 | 0.820322 | 7.293310e-53 | -8.615850e-47 |
| Msa0837680 | Msa0856610 | 0.865974 | 4.001484e-65 | -8.615850e-47 |
| Msa0841500 | Msa0856610 | 0.869348 | 3.311404e-66 | -8.615850e-47 |
| Msa0125590 | Msa0856610 | 0.863231 | 2.885620e-64 | -8.615850e-47 |
| Msa0127340 | Msa0856610 | 0.822857 | 1.892338e-53 | -8.615850e-47 |
| Msa0153210 | Msa0856610 | 0.802869 | 4.570635e-49 | -8.615850e-47 |
| Msa0168380 | Msa0856610 | 0.831524 | 1.589457e-55 | -8.615850e-47 |
| Msa0170070 | Msa0856610 | 0.830716 | 2.510606e-55 | -8.615850e-47 |
| Msa0186180 | Msa0856610 | 0.847956 | 8.325388e-60 | -8.615850e-47 |
| Msa0186360 | Msa0856610 | 0.805800 | 1.120573e-49 | -8.615850e-47 |
| Msa0204970 | Msa0856610 | 0.862704 | 4.197065e-64 | -8.615850e-47 |
| Msa0225800 | Msa0856610 | 0.832191 | 1.088366e-55 | -8.615850e-47 |
| Msa0364680 | Msa0856610 | 0.830769 | 2.436650e-55 | -8.615850e-47 |
| Msa0373170 | Msa0856610 | 0.852544 | 4.307408e-61 | -8.615850e-47 |
| Msa0382230 | Msa0856610 | 0.847397 | 1.187114e-59 | -8.615850e-47 |
| Msa0383940 | Msa0856610 | 0.805733 | 1.157466e-49 | -8.615850e-47 |
| Msa0388620 | Msa0856610 | 0.820765 | 5.771192e-53 | -8.615850e-47 |
| Msa0415820 | Msa0856610 | 0.821905 | 3.148529e-53 | -8.615850e-47 |
| Msa0416210 | Msa0856610 | 0.820925 | 5.301418e-53 | -8.615850e-47 |
| Msa0421750 | Msa0856610 | 0.855031 | 8.284204e-62 | -8.615850e-47 |
| Msa0429970 | Msa0856610 | 0.805168 | 1.520503e-49 | -8.615850e-47 |
| Msa0433630 | Msa0856610 | 0.847591 | 1.049687e-59 | -8.615850e-47 |
| Msa0433760 | Msa0856610 | 0.819355 | 1.213424e-52 | -8.615850e-47 |
| Msa0434360 | Msa0856610 | 0.802924 | 4.453433e-49 | -8.615850e-47 |
| Msa0466520 | Msa0856610 | 0.816766 | 4.667925e-52 | -8.615850e-47 |
| Msa0467690 | Msa0856610 | 0.857385 | 1.692442e-62 | -8.615850e-47 |
| Msa0477480 | Msa0856610 | 0.815829 | 7.565578e-52 | -8.615850e-47 |
| Msa0477630 | Msa0856610 | 0.825264 | 5.154527e-54 | -8.615850e-47 |
| Msa0478140 | Msa0856610 | 0.822821 | 1.929843e-53 | -8.615850e-47 |
| Msa0478200 | Msa0856610 | 0.819404 | 1.182133e-52 | -8.615850e-47 |
| Msa0249870 | Msa0856610 | 0.857680 | 1.383534e-62 | -8.615850e-47 |
| Msa0260570 | Msa0856610 | 0.828594 | 8.245124e-55 | -8.615850e-47 |
| Msa0260630 | Msa0856610 | 0.826180 | 3.125301e-54 | -8.615850e-47 |
| Msa0281540 | Msa0856610 | 0.846076 | 2.725352e-59 | -8.615850e-47 |
| Msa0288400 | Msa0856610 | 0.809686 | 1.673671e-50 | -8.615850e-47 |
| Msa0320250 | Msa0856610 | 0.820003 | 8.629681e-53 | -8.615850e-47 |
| Msa0320270 | Msa0856610 | 0.817738 | 2.822479e-52 | -8.615850e-47 |
| Msa0320290 | Msa0856610 | 0.829022 | 6.495283e-55 | -8.615850e-47 |
| Msa0320580 | Msa0856610 | 0.834758 | 2.490833e-56 | -8.615850e-47 |
| Msa0342220 | Msa0856610 | 0.804673 | 1.929376e-49 | -8.615850e-47 |
| Msa0344110 | Msa0856610 | 0.841714 | 4.019543e-58 | -8.615850e-47 |
| Msa0506540 | Msa0856610 | 0.809198 | 2.130114e-50 | -8.615850e-47 |
| Msa0506880 | Msa0856610 | 0.829370 | 5.348204e-55 | -8.615850e-47 |
| Msa0507810 | Msa0856610 | 0.815728 | 7.965535e-52 | -8.615850e-47 |
| Msa0507820 | Msa0856610 | 0.811434 | 7.014312e-51 | -8.615850e-47 |
| Msa0514020 | Msa0856610 | 0.864318 | 1.325727e-64 | -8.615850e-47 |
| Msa0520680 | Msa0856610 | 0.853856 | 1.811428e-61 | -8.615850e-47 |
| Msa0521510 | Msa0856610 | 0.819546 | 1.097090e-52 | -8.615850e-47 |
| Msa0521530 | Msa0856610 | 0.816110 | 6.548659e-52 | -8.615850e-47 |
| Msa0521680 | Msa0856610 | 0.803553 | 3.299673e-49 | -8.615850e-47 |
| Msa0522300 | Msa0856610 | 0.804622 | 1.977466e-49 | -8.615850e-47 |
| Msa0527850 | Msa0856610 | 0.859891 | 3.022689e-63 | -8.615850e-47 |
| Msa0541740 | Msa0856610 | 0.828769 | 7.479614e-55 | -8.615850e-47 |
| Msa0544410 | Msa0856610 | 0.837667 | 4.539359e-57 | -8.615850e-47 |
| Msa0544430 | Msa0856610 | 0.837740 | 4.349654e-57 | -8.615850e-47 |
| Msa0554300 | Msa0856610 | 0.843763 | 1.147198e-58 | -8.615850e-47 |
| Msa0561560 | Msa0856610 | 0.801761 | 7.731755e-49 | -8.615850e-47 |
| Msa0572830 | Msa0856610 | 0.849428 | 3.253633e-60 | -8.615850e-47 |
| Msa0574660 | Msa0856610 | 0.830750 | 2.463007e-55 | -8.615850e-47 |
| Msa0576330 | Msa0856610 | 0.834108 | 3.627377e-56 | -8.615850e-47 |
| Msa0582460 | Msa0856610 | 0.842407 | 2.634455e-58 | -8.615850e-47 |
| Msa0584530 | Msa0856610 | 0.814037 | 1.888753e-51 | -8.615850e-47 |
| Msa0586200 | Msa0856610 | 0.845219 | 4.654754e-59 | -8.615850e-47 |
| Msa0846900 | Msa0856610 | 0.851451 | 8.799126e-61 | -8.615850e-47 |
| Msa0850600 | Msa0856610 | 0.830211 | 3.337159e-55 | -8.615850e-47 |
| Msa0856610 | Msa0861440 | 0.838055 | 3.608751e-57 | -8.615850e-47 |
| Msa0856610 | Msa0900090 | 0.851524 | 8.391099e-61 | -8.615850e-47 |
| Msa0856610 | Msa0926310 | 0.868827 | 4.887366e-66 | -8.615850e-47 |
| Msa0856610 | Msa0926760 | 0.848818 | 4.808936e-60 | -8.615850e-47 |
| Msa0856610 | Msa0929900 | 0.823672 | 1.221028e-53 | -8.615850e-47 |
| Msa0856610 | Msa0930040 | 0.842262 | 2.878478e-58 | -8.615850e-47 |
| Msa0856610 | Msa0931310 | 0.817377 | 3.403955e-52 | -8.615850e-47 |
| Msa0856610 | Msa0965470 | 0.837818 | 4.152370e-57 | -8.615850e-47 |
| Msa0856610 | Msa0976380 | 0.820103 | 8.186823e-53 | -8.615850e-47 |
| Msa0856610 | Msa1000780 | 0.864634 | 1.056083e-64 | -8.615850e-47 |
| Msa0856610 | Msa1008670 | 0.823067 | 1.690540e-53 | -8.615850e-47 |
| Msa0856610 | Msa1021560 | 0.833843 | 4.224550e-56 | -8.615850e-47 |
| Msa0856610 | Msa1041370 | 0.820466 | 6.758146e-53 | -8.615850e-47 |
| Msa0856610 | Msa1071410 | 0.835432 | 1.684049e-56 | -8.615850e-47 |
| Msa0856610 | Msa1078860 | 0.844024 | 9.766614e-59 | -8.615850e-47 |
| Msa0856610 | Msa1078990 | 0.839530 | 1.499335e-57 | -8.615850e-47 |
| Msa0856610 | Msa1081270 | 0.814721 | 1.333486e-51 | -8.615850e-47 |
| Msa0856610 | Msa1085680 | 0.836837 | 7.405103e-57 | -8.615850e-47 |
| Msa0856610 | Msa1098060 | 0.841384 | 4.910756e-58 | -8.615850e-47 |
| Msa0856610 | Msa1105540 | 0.825723 | 4.012246e-54 | -8.615850e-47 |
| Msa0856610 | Msa1105580 | 0.810489 | 1.123810e-50 | -8.615850e-47 |
| Msa0856610 | Msa1106220 | 0.834139 | 3.561657e-56 | -8.615850e-47 |
| Msa0856610 | Msa1124210 | 0.807203 | 5.668483e-50 | -8.615850e-47 |
| Msa0856610 | Msa1128620 | 0.807808 | 4.218277e-50 | -8.615850e-47 |
| Msa0856610 | Msa1144990 | 0.839969 | 1.152696e-57 | -8.615850e-47 |
| Msa0856610 | Msa1147560 | 0.852495 | 4.445461e-61 | -8.615850e-47 |
| Msa0856610 | Msa1148930 | 0.822799 | 1.952252e-53 | -8.615850e-47 |
| Msa0856610 | Msa1162360 | 0.807872 | 4.087856e-50 | -8.615850e-47 |
| Msa0856610 | Msa1163180 | 0.816306 | 5.920434e-52 | -8.615850e-47 |
| Msa0856610 | Msa1169170 | 0.830969 | 2.176152e-55 | -8.615850e-47 |
| Msa0856610 | Msa1169690 | 0.845158 | 4.834034e-59 | -8.615850e-47 |
| Msa0856610 | Msa1191000 | 0.840514 | 8.308527e-58 | -8.615850e-47 |
| Msa0856610 | Msa1206040 | 0.818351 | 2.050794e-52 | -8.615850e-47 |
| Msa0856610 | Msa1215980 | 0.848917 | 4.514739e-60 | -8.615850e-47 |
| Msa0856610 | Msa1240940 | 0.819508 | 1.119631e-52 | -8.615850e-47 |
| Msa0856610 | Msa1244690 | 0.811681 | 6.198401e-51 | -8.615850e-47 |
| Msa0856610 | Msa1250470 | 0.812014 | 5.247369e-51 | -8.615850e-47 |
| Msa0856610 | Msa1254420 | 0.827952 | 1.177484e-54 | -8.615850e-47 |
| Msa0856610 | Msa1267930 | 0.824540 | 7.637694e-54 | -8.615850e-47 |
| Msa0856610 | Msa1282300 | 0.822799 | 1.952158e-53 | -8.615850e-47 |
| Msa0856610 | Msa1294790 | 0.848129 | 7.460813e-60 | -8.615850e-47 |
| Msa0856610 | Msa1297070 | 0.815650 | 8.294439e-52 | -8.615850e-47 |
| Msa0856610 | Msa1301820 | 0.835878 | 1.298254e-56 | -8.615850e-47 |
| Msa0856610 | Msa1328870 | 0.814847 | 1.250368e-51 | -8.615850e-47 |
| Msa0856610 | Msa1332950 | 0.803115 | 4.067005e-49 | -8.615850e-47 |
| Msa0856610 | Msa1339230 | 0.887599 | 1.238984e-72 | -8.615850e-47 |
| Msa0856610 | Msa1372030 | 0.812203 | 4.770268e-51 | -8.615850e-47 |
| Msa0856610 | Msa1381470 | 0.804019 | 2.640761e-49 | -8.615850e-47 |
| Msa0856610 | Msa1381800 | 0.836706 | 7.998863e-57 | -8.615850e-47 |
| Msa0856610 | Msa1387500 | 0.821796 | 3.337484e-53 | -8.615850e-47 |
| Msa0856610 | Msa1389820 | 0.808496 | 3.009619e-50 | -8.615850e-47 |
| Msa0856610 | Msa1390210 | 0.832892 | 7.293171e-56 | -8.615850e-47 |
| Msa0856610 | Msa1393560 | 0.826276 | 2.965069e-54 | -8.615850e-47 |
| Msa0856610 | Msa1399190 | 0.856217 | 3.734902e-62 | -8.615850e-47 |
| Msa0856610 | Msa1406720 | 0.805976 | 1.029156e-49 | -8.615850e-47 |
| Msa0856610 | Msa1410190 | 0.830196 | 3.365455e-55 | -8.615850e-47 |
| Msa0856610 | Msa1424370 | 0.801424 | 9.064964e-49 | -8.615850e-47 |
| Msa0856610 | Msa1426320 | 0.808672 | 2.760575e-50 | -8.615850e-47 |
| Msa0856610 | Msa1431520 | 0.804628 | 1.971432e-49 | -8.615850e-47 |
| Msa0856610 | Msa1432520 | 0.802057 | 6.721711e-49 | -8.615850e-47 |
| Msa0856610 | Msa1435100 | 0.843417 | 1.419803e-58 | -8.615850e-47 |
| Msa0856610 | Msa1439730 | 0.848716 | 5.134358e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856610 | MtrunA17_Chr5g0410931 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0856610 | MtrunA17_Chr5g0410951 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0856610 | MtrunA17_Chr8g0383851 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0856610 | MtrunA17_Chr8g0383781 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0856610 | MtrunA17_Chr8g0390361 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0856610 | MtrunA17_Chr2g0295191 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0856610 | MtrunA17_Chr7g0237661 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0856610 | MtrunA17_Chr4g0033041 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0856610 | MtrunA17_Chr7g0218971 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0856610 | MtrunA17_Chr4g0046301 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0856610 | MtrunA17_Chr8g0364801 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0856610 | MtrunA17_Chr4g0054161 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 2.60e-93 | 265 |
| Msa0856610 | MtrunA17_Chr8g0363741 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 2.60e-93 | 265 |
| Msa0856610 | MtrunA17_Chr1g0156021 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 2.60e-93 | 265 |
| Msa0856610 | MtrunA17_Chr4g0054151 | 97.059 | 136 | 4 | 0 | 1 | 136 | 4 | 139 | 2.61e-93 | 265 |
| Msa0856610 | MtrunA17_Chr8g0388121 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.09e-92 | 264 |
| Msa0856610 | MtrunA17_Chr2g0319141 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.10e-86 | 248 |
| Msa0856610 | MtrunA17_Chr2g0319151 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.10e-86 | 248 |
| Msa0856610 | MtrunA17_Chr2g0319131 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.38e-82 | 238 |
| Msa0856610 | MtrunA17_Chr2g0319121 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 5.82e-75 | 219 |
| Msa0856610 | MtrunA17_Chr7g0218961 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 8.01e-66 | 195 |
| Msa0856610 | MtrunA17_Chr7g0222991 | 67.164 | 134 | 43 | 1 | 1 | 134 | 10 | 142 | 5.47e-56 | 171 |
| Msa0856610 | MtrunA17_Chr5g0407311 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.29e-45 | 144 |
| Msa0856610 | MtrunA17_Chr7g0223001 | 58.647 | 133 | 41 | 3 | 3 | 134 | 27 | 146 | 5.46e-43 | 139 |
| Msa0856610 | MtrunA17_Chr7g0240791 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 9.61e-41 | 133 |
| Msa0856610 | MtrunA17_Chr8g0347231 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 3.80e-30 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856610 | AT1G09200.1 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.62e-95 | 271 |
| Msa0856610 | AT5G65360.1 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.62e-95 | 271 |
| Msa0856610 | AT5G10390.1 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.62e-95 | 271 |
| Msa0856610 | AT5G10400.1 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.62e-95 | 271 |
| Msa0856610 | AT3G27360.1 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.62e-95 | 271 |
| Msa0856610 | AT4G40030.3 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.59e-93 | 265 |
| Msa0856610 | AT4G40030.1 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.59e-93 | 265 |
| Msa0856610 | AT4G40030.4 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.59e-93 | 265 |
| Msa0856610 | AT5G10980.1 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.59e-93 | 265 |
| Msa0856610 | AT4G40040.2 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.59e-93 | 265 |
| Msa0856610 | AT4G40040.3 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.59e-93 | 265 |
| Msa0856610 | AT4G40040.1 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.59e-93 | 265 |
| Msa0856610 | AT4G40030.2 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 7.05e-93 | 266 |
| Msa0856610 | AT5G65350.1 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.30e-91 | 260 |
| Msa0856610 | AT1G75600.1 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.25e-89 | 256 |
| Msa0856610 | AT1G13370.1 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.55e-89 | 254 |
| Msa0856610 | AT1G19890.1 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.07e-83 | 241 |
| Msa0856610 | AT5G12910.1 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.90e-67 | 198 |
| Msa0856610 | AT1G01370.2 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.97e-31 | 110 |
| Msa0856610 | AT1G01370.1 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.97e-31 | 110 |
| Msa0856610 | AT1G01370.4 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.97e-31 | 110 |
| Msa0856610 | AT1G01370.3 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.97e-31 | 110 |
Find 33 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTCTCTAACCAATCTT+TGG | 0.237540 | 5_4:-51391398 | None:intergenic |
| TTCTTCACTCCTCCGGTTGC+CGG | 0.280449 | 5_4:-51391285 | None:intergenic |
| TCACGAAGAGCGACTGTTCC+TGG | 0.301860 | 5_4:-51391324 | None:intergenic |
| GCAGCTGAAGCTTATCTTGT+TGG | 0.346066 | 5_4:+51391480 | Msa0856610:CDS |
| AGCTGATTTCCGAGCGGCTT+TGG | 0.356003 | 5_4:-51391262 | None:intergenic |
| GAAGCTTCCTTTCCAAAGAT+TGG | 0.376805 | 5_4:+51391386 | Msa0856610:CDS |
| CGGAAATCAGCTCCGGCAAC+CGG | 0.396553 | 5_4:+51391273 | Msa0856610:CDS |
| GAGCGGAAACAGCGCTACTC+TGG | 0.433957 | 5_4:-51391449 | None:intergenic |
| TTGGTGGCGAGCTGTTTCCT+TGG | 0.436325 | 5_4:-51391243 | None:intergenic |
| AAGCCCTCTCGCCTCTGATT+CGG | 0.461144 | 5_4:-51391581 | None:intergenic |
| ATGTGGCTTCTTCACTCCTC+CGG | 0.485740 | 5_4:-51391292 | None:intergenic |
| AGCCGCTCGGAAATCAGCTC+CGG | 0.492100 | 5_4:+51391266 | Msa0856610:CDS |
| AGCATGAATAGCACAAAGAT+TGG | 0.492949 | 5_4:-51391517 | None:intergenic |
| TGATTTCCGAGCGGCTTTGG+TGG | 0.495094 | 5_4:-51391259 | None:intergenic |
| CGAGCAAGTTGAATATCCTT+AGG | 0.498424 | 5_4:-51391558 | None:intergenic |
| AAACAGCGCTACTCTGGAAT+CGG | 0.503171 | 5_4:-51391443 | None:intergenic |
| GAGAGTTACTATTATGCCTA+AGG | 0.517685 | 5_4:+51391542 | Msa0856610:CDS |
| AGAGCACAGAGCTTCTCATA+AGG | 0.533669 | 5_4:+51391364 | Msa0856610:CDS |
| CAACTTGCTCGCCGAATCAG+AGG | 0.534605 | 5_4:+51391570 | Msa0856610:CDS |
| ATTGGTTAGAGAAATTGCTC+AGG | 0.542546 | 5_4:+51391404 | Msa0856610:CDS |
| TCTCTAACCAATCTTTGGAA+AGG | 0.542941 | 5_4:-51391393 | None:intergenic |
| AGCTCGCCACCAAAGCCGCT+CGG | 0.547091 | 5_4:+51391253 | Msa0856610:CDS |
| TTCAGCTGCTTCTTGAAGAG+CGG | 0.576635 | 5_4:-51391466 | None:intergenic |
| TCGCCGAATCAGAGGCGAGA+GGG | 0.598725 | 5_4:+51391578 | Msa0856610:CDS |
| AAATCAGCTCCGGCAACCGG+AGG | 0.609979 | 5_4:+51391276 | Msa0856610:CDS |
| AAGCCACATAGATTCCGTCC+AGG | 0.611045 | 5_4:+51391306 | Msa0856610:CDS |
| CAAACAGCAAGAAAATCCAC+CGG | 0.620184 | 5_4:+51391210 | Msa0856610:CDS |
| CTCGCCGAATCAGAGGCGAG+AGG | 0.633846 | 5_4:+51391577 | Msa0856610:CDS |
| GTTCCTGGACGGAATCTATG+TGG | 0.636510 | 5_4:-51391309 | None:intergenic |
| GAAGAGCGACTGTTCCTGGA+CGG | 0.668213 | 5_4:-51391320 | None:intergenic |
| CCACCGGAGGAAAAGCACCA+AGG | 0.683879 | 5_4:+51391226 | Msa0856610:CDS |
| ACAGCAAGAAAATCCACCGG+AGG | 0.684797 | 5_4:+51391213 | Msa0856610:CDS |
| TGCCGGAGCTGATTTCCGAG+CGG | 0.724331 | 5_4:-51391268 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| CAATTTCTCTAACCAATCTT+TGG | - | chr5_4:51391401-51391420 | None:intergenic | 30.0% | |
| !!! | GGATTTTCTTGCTGTTTGTT+TGG | - | chr5_4:51391208-51391227 | None:intergenic | 35.0% |
| ! | TCTCTAACCAATCTTTGGAA+AGG | - | chr5_4:51391396-51391415 | None:intergenic | 35.0% |
| ATTGGTTAGAGAAATTGCTC+AGG | + | chr5_4:51391404-51391423 | Msa0856610:CDS | 35.0% | |
| AGCATGAATAGCACAAAGAT+TGG | - | chr5_4:51391520-51391539 | None:intergenic | 35.0% | |
| GAGAGTTACTATTATGCCTA+AGG | + | chr5_4:51391542-51391561 | Msa0856610:CDS | 35.0% | |
| CAAACAGCAAGAAAATCCAC+CGG | + | chr5_4:51391210-51391229 | Msa0856610:CDS | 40.0% | |
| GAAGCTTCCTTTCCAAAGAT+TGG | + | chr5_4:51391386-51391405 | Msa0856610:CDS | 40.0% | |
| ! | CGAGCAAGTTGAATATCCTT+AGG | - | chr5_4:51391561-51391580 | None:intergenic | 40.0% |
| !!! | TTTCCTTGGTGCTTTTCCTC+CGG | - | chr5_4:51391232-51391251 | None:intergenic | 45.0% |
| AGAGCACAGAGCTTCTCATA+AGG | + | chr5_4:51391364-51391383 | Msa0856610:CDS | 45.0% | |
| !! | AAACAGCGCTACTCTGGAAT+CGG | - | chr5_4:51391446-51391465 | None:intergenic | 45.0% |
| TTCAGCTGCTTCTTGAAGAG+CGG | - | chr5_4:51391469-51391488 | None:intergenic | 45.0% | |
| GCAGCTGAAGCTTATCTTGT+TGG | + | chr5_4:51391480-51391499 | Msa0856610:CDS | 45.0% | |
| ACAGCAAGAAAATCCACCGG+AGG | + | chr5_4:51391213-51391232 | Msa0856610:CDS | 50.0% | |
| ATGTGGCTTCTTCACTCCTC+CGG | - | chr5_4:51391295-51391314 | None:intergenic | 50.0% | |
| AAGCCACATAGATTCCGTCC+AGG | + | chr5_4:51391306-51391325 | Msa0856610:CDS | 50.0% | |
| GTTCCTGGACGGAATCTATG+TGG | - | chr5_4:51391312-51391331 | None:intergenic | 50.0% | |
| !! | TTGGTGGCGAGCTGTTTCCT+TGG | - | chr5_4:51391246-51391265 | None:intergenic | 55.0% |
| ! | TGATTTCCGAGCGGCTTTGG+TGG | - | chr5_4:51391262-51391281 | None:intergenic | 55.0% |
| ! | AGCTGATTTCCGAGCGGCTT+TGG | - | chr5_4:51391265-51391284 | None:intergenic | 55.0% |
| TTCTTCACTCCTCCGGTTGC+CGG | - | chr5_4:51391288-51391307 | None:intergenic | 55.0% | |
| GAAGAGCGACTGTTCCTGGA+CGG | - | chr5_4:51391323-51391342 | None:intergenic | 55.0% | |
| TCACGAAGAGCGACTGTTCC+TGG | - | chr5_4:51391327-51391346 | None:intergenic | 55.0% | |
| ! | CAACTTGCTCGCCGAATCAG+AGG | + | chr5_4:51391570-51391589 | Msa0856610:CDS | 55.0% |
| AAGCCCTCTCGCCTCTGATT+CGG | - | chr5_4:51391584-51391603 | None:intergenic | 55.0% | |
| !!! | CCTTGGTGCTTTTCCTCCGG+TGG | - | chr5_4:51391229-51391248 | None:intergenic | 60.0% |
| !! | CCACCGGAGGAAAAGCACCA+AGG | + | chr5_4:51391226-51391245 | Msa0856610:CDS | 60.0% |
| AGCCGCTCGGAAATCAGCTC+CGG | + | chr5_4:51391266-51391285 | Msa0856610:CDS | 60.0% | |
| ! | TGCCGGAGCTGATTTCCGAG+CGG | - | chr5_4:51391271-51391290 | None:intergenic | 60.0% |
| CGGAAATCAGCTCCGGCAAC+CGG | + | chr5_4:51391273-51391292 | Msa0856610:CDS | 60.0% | |
| AAATCAGCTCCGGCAACCGG+AGG | + | chr5_4:51391276-51391295 | Msa0856610:CDS | 60.0% | |
| GAGCGGAAACAGCGCTACTC+TGG | - | chr5_4:51391452-51391471 | None:intergenic | 60.0% | |
| TCGCCGAATCAGAGGCGAGA+GGG | + | chr5_4:51391578-51391597 | Msa0856610:CDS | 60.0% | |
| AGCTCGCCACCAAAGCCGCT+CGG | + | chr5_4:51391253-51391272 | Msa0856610:CDS | 65.0% | |
| CTCGCCGAATCAGAGGCGAG+AGG | + | chr5_4:51391577-51391596 | Msa0856610:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 51391195 | 51391605 | 51391195 | ID=Msa0856610;Name=Msa0856610 |
| chr5_4 | mRNA | 51391195 | 51391605 | 51391195 | ID=Msa0856610-mRNA-1;Parent=Msa0856610;Name=Msa0856610-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|-1|0|1|-1|1|1|0|136 |
| chr5_4 | exon | 51391195 | 51391605 | 51391195 | ID=Msa0856610-mRNA-1:exon:16058;Parent=Msa0856610-mRNA-1 |
| chr5_4 | CDS | 51391195 | 51391605 | 51391195 | ID=Msa0856610-mRNA-1:cds;Parent=Msa0856610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
