AlfalfaGEDB | Msa0856610

M. sativa cultivar zhongmu-4 / Msa0856610

KEGG: K11253
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464
PFAM: PF00125.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0856610	KYP58465.1	100.000	136	0	0	1	136	5	140	1.76e-92	273

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0856610	sp\|P68428\|H32_WHEAT	100.000	136	0	0	1	136	1	136	5.15e-95	272

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0856610	A0A452Z7H5	100.000	136	0	0	1	136	100	235	3.73e-93	278

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006840	Msa0856610	0.843198	1.623465e-58	-8.615850e-47
Msa0018920	Msa0856610	0.812796	3.540908e-51	-8.615850e-47
Msa0027800	Msa0856610	0.805205	1.493383e-49	-8.615850e-47
Msa0030070	Msa0856610	0.857611	1.450797e-62	-8.615850e-47
Msa0041910	Msa0856610	0.807770	4.297002e-50	-8.615850e-47
Msa0049450	Msa0856610	0.809357	1.969439e-50	-8.615850e-47
Msa0050530	Msa0856610	0.859647	3.579798e-63	-8.615850e-47
Msa0058130	Msa0856610	0.816609	5.063195e-52	-8.615850e-47
Msa0078130	Msa0856610	0.822900	1.849429e-53	-8.615850e-47
Msa0079410	Msa0856610	0.834315	3.217865e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
Msa0856610	MtrunA17_Chr5g0410931	100.000	136	1	136	1	136	3.79e-96	272
Msa0856610	MtrunA17_Chr5g0410951	100.000	136	1	136	1	136	3.79e-96	272
Msa0856610	MtrunA17_Chr8g0383851	100.000	136	1	136	1	136	3.79e-96	272
Msa0856610	MtrunA17_Chr8g0383781	100.000	136	1	136	1	136	3.79e-96	272
Msa0856610	MtrunA17_Chr8g0390361	100.000	136	1	136	1	136	3.79e-96	272
Msa0856610	MtrunA17_Chr2g0295191	100.000	136	1	136	1	136	3.79e-96	272
Msa0856610	MtrunA17_Chr7g0237661	100.000	136	1	136	1	136	3.79e-96	272
Msa0856610	MtrunA17_Chr4g0033041	100.000	136	1	136	1	136	3.79e-96	272
Msa0856610	MtrunA17_Chr7g0218971	100.000	136	1	136	1	136	3.79e-96	272
Msa0856610	MtrunA17_Chr4g0046301	100.000	136	1	136	1	136	3.79e-96	272

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0856610	AT1G09200.1	99.265	136	1	1	136	1	136	1.62e-95	271
Msa0856610	AT5G65360.1	99.265	136	1	1	136	1	136	1.62e-95	271
Msa0856610	AT5G10390.1	99.265	136	1	1	136	1	136	1.62e-95	271
Msa0856610	AT5G10400.1	99.265	136	1	1	136	1	136	1.62e-95	271
Msa0856610	AT3G27360.1	99.265	136	1	1	136	1	136	1.62e-95	271
Msa0856610	AT4G40030.3	97.059	136	4	1	136	1	136	3.59e-93	265
Msa0856610	AT4G40030.1	97.059	136	4	1	136	1	136	3.59e-93	265
Msa0856610	AT4G40030.4	97.059	136	4	1	136	1	136	3.59e-93	265
Msa0856610	AT5G10980.1	97.059	136	4	1	136	1	136	3.59e-93	265
Msa0856610	AT4G40040.2	97.059	136	4	1	136	1	136	3.59e-93	265

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Find 33 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCGCTACTCTGGAAT+CGG	0.503171	5_4:-51391443	None:intergenic
AAATCAGCTCCGGCAACCGG+AGG	0.609979	5_4:+51391276	Msa0856610:CDS
AAGCCACATAGATTCCGTCC+AGG	0.611045	5_4:+51391306	Msa0856610:CDS
AAGCCCTCTCGCCTCTGATT+CGG	0.461144	5_4:-51391581	None:intergenic
ACAGCAAGAAAATCCACCGG+AGG	0.684797	5_4:+51391213	Msa0856610:CDS
AGAGCACAGAGCTTCTCATA+AGG	0.533669	5_4:+51391364	Msa0856610:CDS
AGCATGAATAGCACAAAGAT+TGG	0.492949	5_4:-51391517	None:intergenic
AGCCGCTCGGAAATCAGCTC+CGG	0.492100	5_4:+51391266	Msa0856610:CDS
AGCTCGCCACCAAAGCCGCT+CGG	0.547091	5_4:+51391253	Msa0856610:CDS
AGCTGATTTCCGAGCGGCTT+TGG	0.356003	5_4:-51391262	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAATTTCTCTAACCAATCTT+TGG	-	chr5_4:51391401-51391420	None:intergenic	30.0%
ATTGGTTAGAGAAATTGCTC+AGG	+	chr5_4:51391404-51391423	Msa0856610:CDS	35.0%
AGCATGAATAGCACAAAGAT+TGG	-	chr5_4:51391520-51391539	None:intergenic	35.0%
GAGAGTTACTATTATGCCTA+AGG	+	chr5_4:51391542-51391561	Msa0856610:CDS	35.0%
CAAACAGCAAGAAAATCCAC+CGG	+	chr5_4:51391210-51391229	Msa0856610:CDS	40.0%
GAAGCTTCCTTTCCAAAGAT+TGG	+	chr5_4:51391386-51391405	Msa0856610:CDS	40.0%
AGAGCACAGAGCTTCTCATA+AGG	+	chr5_4:51391364-51391383	Msa0856610:CDS	45.0%
TTCAGCTGCTTCTTGAAGAG+CGG	-	chr5_4:51391469-51391488	None:intergenic	45.0%
GCAGCTGAAGCTTATCTTGT+TGG	+	chr5_4:51391480-51391499	Msa0856610:CDS	45.0%
ACAGCAAGAAAATCCACCGG+AGG	+	chr5_4:51391213-51391232	Msa0856610:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	51391195	51391605	51391195	ID=Msa0856610;Name=Msa0856610
chr5_4	mRNA	51391195	51391605	51391195	ID=Msa0856610-mRNA-1;Parent=Msa0856610;Name=Msa0856610-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|136
chr5_4	exon	51391195	51391605	51391195	ID=Msa0856610-mRNA-1:exon:16058;Parent=Msa0856610-mRNA-1
chr5_4	CDS	51391195	51391605	51391195	ID=Msa0856610-mRNA-1:cds;Parent=Msa0856610-mRNA-1

Gene Sequence

>Msa0856610

ATGGCACGTACCAAACAAACAGCAAGAAAATCCACCGGAGGAAAAGCACCAAGGAAACAGCTCGCCACCAAAGCCGCTCGGAAATCAGCTCCGGCAACCGGAGGAGTGAAGAAGCCACATAGATTCCGTCCAGGAACAGTCGCTCTTCGTGAAATCAGAAAGTATCAGAAGAGCACAGAGCTTCTCATAAGGAAGCTTCCTTTCCAAAGATTGGTTAGAGAAATTGCTCAGGATTTCAAAACTGATCTCCGATTCCAGAGTAGCGCTGTTTCCGCTCTTCAAGAAGCAGCTGAAGCTTATCTTGTTGGTTTGTTTGAAGATACCAATCTTTGTGCTATTCATGCTAAGAGAGTTACTATTATGCCTAAGGATATTCAACTTGCTCGCCGAATCAGAGGCGAGAGGGCTTAG

Protein sequence

>Msa0856610

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*