Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763150 | XP_003593643.1 | 98.182 | 55 | 1 | 0 | 1 | 55 | 1 | 55 | 2.89e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763150 | sp|A9IGC5|DNAJ_BORPD | 80.769 | 52 | 9 | 1 | 4 | 55 | 5 | 55 | 2.61e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763150 | A2Q503 | 98.182 | 55 | 1 | 0 | 1 | 55 | 1 | 55 | 1.38e-30 | 119 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004920 | Msa0763150 | 0.805312 | 1.418504e-49 | -8.615850e-47 |
| Msa0020930 | Msa0763150 | 0.801654 | 8.129818e-49 | -8.615850e-47 |
| Msa0040450 | Msa0763150 | 0.806296 | 8.813590e-50 | -8.615850e-47 |
| Msa0051770 | Msa0763150 | 0.800833 | 1.197444e-48 | -8.615850e-47 |
| Msa0068680 | Msa0763150 | 0.801141 | 1.035544e-48 | -8.615850e-47 |
| Msa0084080 | Msa0763150 | 0.805298 | 1.428141e-49 | -8.615850e-47 |
| Msa0617580 | Msa0763150 | 0.810080 | 1.377049e-50 | -8.615850e-47 |
| Msa0693380 | Msa0763150 | 0.814251 | 1.694585e-51 | -8.615850e-47 |
| Msa0737560 | Msa0763150 | 0.806984 | 6.307398e-50 | -8.615850e-47 |
| Msa0737570 | Msa0763150 | 0.807318 | 5.360828e-50 | -8.615850e-47 |
| Msa0760880 | Msa0763150 | 0.968543 | 7.940735e-129 | -8.615850e-47 |
| Msa0763150 | Msa0805430 | 0.800161 | 1.641259e-48 | -8.615850e-47 |
| Msa0763150 | Msa0824660 | 0.810964 | 8.868569e-51 | -8.615850e-47 |
| Msa0763150 | Msa0830530 | 0.805912 | 1.061685e-49 | -8.615850e-47 |
| Msa0763150 | Msa0856920 | 0.815607 | 8.475456e-52 | -8.615850e-47 |
| Msa0763150 | Msa0930860 | 0.807358 | 5.255704e-50 | -8.615850e-47 |
| Msa0763150 | Msa1041210 | 0.800813 | 1.208635e-48 | -8.615850e-47 |
| Msa0763150 | Msa1041670 | 0.802440 | 5.605756e-49 | -8.615850e-47 |
| Msa0763150 | Msa1063950 | 0.806399 | 8.384089e-50 | -8.615850e-47 |
| Msa0763150 | Msa1082500 | 0.809224 | 2.103282e-50 | -8.615850e-47 |
| Msa0763150 | Msa1111110 | 0.810720 | 1.001557e-50 | -8.615850e-47 |
| Msa0763150 | Msa1165740 | 0.820425 | 6.905719e-53 | -8.615850e-47 |
| Msa0763150 | Msa1199570 | 0.808209 | 3.465904e-50 | -8.615850e-47 |
| Msa0763150 | Msa1204530 | 0.807311 | 5.377977e-50 | -8.615850e-47 |
| Msa0763150 | Msa1297290 | 0.802446 | 5.588377e-49 | -8.615850e-47 |
| Msa0763150 | Msa1320740 | 0.814135 | 1.797316e-51 | -8.615850e-47 |
| Msa0763150 | Msa1328710 | 0.804735 | 1.872714e-49 | -8.615850e-47 |
| Msa0763150 | Msa1366600 | 0.810113 | 1.354745e-50 | -8.615850e-47 |
| Msa0763150 | Msa1374040 | 0.806409 | 8.341581e-50 | -8.615850e-47 |
| Msa0763150 | Msa1385000 | 0.803983 | 2.686972e-49 | -8.615850e-47 |
| Msa0763150 | Msa1402400 | 0.802788 | 4.751455e-49 | -8.615850e-47 |
| Msa0763150 | Msa1407580 | 0.807730 | 4.382682e-50 | -8.615850e-47 |
| Msa0763150 | Msa1427060 | 0.800614 | 1.327043e-48 | -8.615850e-47 |
| Msa0137840 | Msa0763150 | 0.807765 | 4.307555e-50 | -8.615850e-47 |
| Msa0142480 | Msa0763150 | 0.808037 | 3.770039e-50 | -8.615850e-47 |
| Msa0146260 | Msa0763150 | 0.807302 | 5.402076e-50 | -8.615850e-47 |
| Msa0159930 | Msa0763150 | 0.803839 | 2.878246e-49 | -8.615850e-47 |
| Msa0184040 | Msa0763150 | 0.800135 | 1.661238e-48 | -8.615850e-47 |
| Msa0372660 | Msa0763150 | 0.810832 | 9.473122e-51 | -8.615850e-47 |
| Msa0372670 | Msa0763150 | 0.807660 | 4.535922e-50 | -8.615850e-47 |
| Msa0376350 | Msa0763150 | 0.801635 | 8.205550e-49 | -8.615850e-47 |
| Msa0410500 | Msa0763150 | 0.809279 | 2.046345e-50 | -8.615850e-47 |
| Msa0410650 | Msa0763150 | 0.804065 | 2.582959e-49 | -8.615850e-47 |
| Msa0423900 | Msa0763150 | 0.807375 | 5.211582e-50 | -8.615850e-47 |
| Msa0433640 | Msa0763150 | 0.816714 | 4.796983e-52 | -8.615850e-47 |
| Msa0439970 | Msa0763150 | 0.801601 | 8.338474e-49 | -8.615850e-47 |
| Msa0443880 | Msa0763150 | 0.823984 | 1.031964e-53 | -8.615850e-47 |
| Msa0271810 | Msa0763150 | 0.808757 | 2.647162e-50 | -8.615850e-47 |
| Msa0284410 | Msa0763150 | 0.808709 | 2.711117e-50 | -8.615850e-47 |
| Msa0292120 | Msa0763150 | 0.803445 | 3.474708e-49 | -8.615850e-47 |
| Msa0317730 | Msa0763150 | 0.803251 | 3.811012e-49 | -8.615850e-47 |
| Msa0484780 | Msa0763150 | 0.832882 | 7.335735e-56 | -8.615850e-47 |
| Msa0507680 | Msa0763150 | 0.809765 | 1.609581e-50 | -8.615850e-47 |
| Msa0512870 | Msa0763150 | 0.810556 | 1.087150e-50 | -8.615850e-47 |
| Msa0521500 | Msa0763150 | 0.808777 | 2.621376e-50 | -8.615850e-47 |
| Msa0521540 | Msa0763150 | 0.821599 | 3.705396e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763150 | MtrunA17_Chr2g0282761 | 98.182 | 55 | 1 | 0 | 1 | 55 | 1 | 55 | 2.66e-34 | 119 |
| Msa0763150 | MtrunA17_Chr4g0040501 | 83.636 | 55 | 9 | 0 | 1 | 55 | 1 | 55 | 3.52e-28 | 103 |
| Msa0763150 | MtrunA17_Chr2g0282741 | 81.818 | 55 | 10 | 0 | 1 | 55 | 1 | 55 | 2.67e-27 | 101 |
| Msa0763150 | MtrunA17_Chr4g0006391 | 74.576 | 59 | 14 | 1 | 1 | 59 | 1 | 58 | 1.38e-26 | 99.4 |
| Msa0763150 | MtrunA17_Chr3g0138471 | 77.778 | 54 | 12 | 0 | 1 | 54 | 1 | 54 | 9.61e-26 | 97.1 |
| Msa0763150 | MtrunA17_Chr2g0324921 | 74.576 | 59 | 14 | 1 | 1 | 59 | 1 | 58 | 1.38e-25 | 96.7 |
| Msa0763150 | MtrunA17_Chr7g0263971 | 57.692 | 52 | 22 | 0 | 4 | 55 | 369 | 420 | 4.13e-16 | 71.2 |
| Msa0763150 | MtrunA17_Chr7g0269841 | 62.745 | 51 | 18 | 1 | 5 | 55 | 27 | 76 | 2.98e-15 | 68.6 |
| Msa0763150 | MtrunA17_Chr3g0123861 | 59.615 | 52 | 19 | 1 | 4 | 55 | 82 | 131 | 6.51e-13 | 62.4 |
| Msa0763150 | MtrunA17_Chr5g0415731 | 50.847 | 59 | 22 | 1 | 4 | 55 | 5 | 63 | 1.58e-12 | 58.9 |
| Msa0763150 | MtrunA17_Chr7g0271891 | 41.429 | 70 | 36 | 2 | 5 | 69 | 17 | 86 | 2.88e-12 | 58.5 |
| Msa0763150 | MtrunA17_Chr3g0093111 | 50.000 | 54 | 26 | 1 | 3 | 55 | 1 | 54 | 4.21e-12 | 59.7 |
| Msa0763150 | MtrunA17_Chr8g0344721 | 46.429 | 56 | 25 | 1 | 4 | 54 | 10 | 65 | 9.05e-12 | 58.2 |
| Msa0763150 | MtrunA17_Chr6g0478651 | 55.357 | 56 | 19 | 2 | 2 | 55 | 66 | 117 | 9.24e-12 | 58.9 |
| Msa0763150 | MtrunA17_Chr5g0427221 | 51.923 | 52 | 24 | 1 | 4 | 55 | 48 | 98 | 1.05e-11 | 57.0 |
| Msa0763150 | MtrunA17_Chr6g0460461 | 42.105 | 57 | 29 | 1 | 3 | 55 | 1 | 57 | 1.85e-11 | 57.4 |
| Msa0763150 | MtrunA17_Chr6g0460411 | 42.105 | 57 | 29 | 1 | 3 | 55 | 1 | 57 | 2.81e-11 | 57.0 |
| Msa0763150 | MtrunA17_Chr3g0087741 | 50.000 | 52 | 25 | 1 | 4 | 55 | 89 | 139 | 3.30e-11 | 57.4 |
| Msa0763150 | MtrunA17_Chr8g0334811 | 54.902 | 51 | 18 | 1 | 5 | 55 | 15 | 60 | 4.66e-11 | 57.0 |
| Msa0763150 | MtrunA17_Chr5g0426951 | 50.000 | 52 | 25 | 1 | 4 | 55 | 83 | 133 | 5.41e-11 | 57.0 |
| Msa0763150 | MtrunA17_Chr4g0021141 | 49.020 | 51 | 25 | 1 | 4 | 54 | 22 | 71 | 7.18e-11 | 54.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763150 | AT3G08910.1 | 76.271 | 59 | 13 | 1 | 1 | 59 | 1 | 58 | 2.64e-26 | 98.6 |
| Msa0763150 | AT5G01390.3 | 74.576 | 59 | 14 | 1 | 1 | 59 | 1 | 58 | 5.66e-26 | 96.3 |
| Msa0763150 | AT5G01390.2 | 74.576 | 59 | 14 | 1 | 1 | 59 | 1 | 58 | 5.97e-26 | 97.1 |
| Msa0763150 | AT5G01390.4 | 74.576 | 59 | 14 | 1 | 1 | 59 | 1 | 58 | 6.61e-26 | 95.9 |
| Msa0763150 | AT5G25530.2 | 74.545 | 55 | 14 | 0 | 1 | 55 | 1 | 55 | 9.83e-26 | 97.4 |
| Msa0763150 | AT4G28480.2 | 74.576 | 59 | 14 | 1 | 1 | 59 | 1 | 58 | 1.11e-25 | 96.7 |
| Msa0763150 | AT5G01390.1 | 74.576 | 59 | 14 | 1 | 1 | 59 | 1 | 58 | 1.29e-25 | 97.1 |
| Msa0763150 | AT5G25530.1 | 74.545 | 55 | 14 | 0 | 1 | 55 | 1 | 55 | 1.45e-25 | 97.1 |
| Msa0763150 | AT4G28480.1 | 74.576 | 59 | 14 | 1 | 1 | 59 | 1 | 58 | 2.75e-25 | 96.3 |
| Msa0763150 | AT2G20560.1 | 74.545 | 55 | 14 | 0 | 1 | 55 | 1 | 55 | 3.24e-25 | 95.9 |
| Msa0763150 | AT1G10350.1 | 64.407 | 59 | 20 | 1 | 1 | 59 | 1 | 58 | 1.97e-21 | 85.9 |
| Msa0763150 | AT3G47940.1 | 66.667 | 60 | 18 | 2 | 1 | 59 | 1 | 59 | 3.27e-20 | 82.8 |
| Msa0763150 | AT1G59725.1 | 65.000 | 60 | 19 | 2 | 1 | 59 | 1 | 59 | 7.30e-20 | 81.6 |
| Msa0763150 | AT2G41000.2 | 47.368 | 57 | 26 | 1 | 3 | 55 | 2 | 58 | 1.91e-14 | 65.5 |
| Msa0763150 | AT2G41000.1 | 47.368 | 57 | 26 | 1 | 3 | 55 | 2 | 58 | 5.36e-14 | 63.9 |
| Msa0763150 | AT5G03160.1 | 51.923 | 52 | 25 | 0 | 4 | 55 | 370 | 421 | 1.16e-13 | 64.7 |
| Msa0763150 | AT2G22360.1 | 61.538 | 52 | 18 | 1 | 4 | 55 | 86 | 135 | 3.59e-13 | 63.5 |
| Msa0763150 | AT3G62600.1 | 53.704 | 54 | 24 | 1 | 2 | 55 | 24 | 76 | 1.04e-12 | 62.0 |
| Msa0763150 | AT4G39960.1 | 59.615 | 52 | 19 | 1 | 4 | 55 | 85 | 134 | 1.14e-12 | 62.0 |
| Msa0763150 | AT4G39960.2 | 59.615 | 52 | 19 | 1 | 4 | 55 | 85 | 134 | 1.14e-12 | 62.0 |
| Msa0763150 | AT3G17830.1 | 57.143 | 56 | 18 | 2 | 2 | 55 | 61 | 112 | 1.96e-12 | 61.2 |
| Msa0763150 | AT1G56300.2 | 49.057 | 53 | 24 | 1 | 5 | 54 | 14 | 66 | 2.53e-12 | 58.2 |
| Msa0763150 | AT5G48030.1 | 55.769 | 52 | 22 | 1 | 4 | 55 | 94 | 144 | 3.83e-12 | 60.5 |
| Msa0763150 | AT1G56300.1 | 49.057 | 53 | 24 | 1 | 5 | 54 | 14 | 66 | 4.32e-12 | 58.5 |
| Msa0763150 | AT1G59980.2 | 52.000 | 50 | 23 | 1 | 6 | 55 | 25 | 73 | 5.06e-12 | 60.1 |
| Msa0763150 | AT1G59980.1 | 52.000 | 50 | 23 | 1 | 6 | 55 | 25 | 73 | 8.76e-12 | 59.3 |
| Msa0763150 | AT5G16650.2 | 54.902 | 51 | 22 | 1 | 4 | 54 | 11 | 60 | 4.87e-11 | 55.8 |
| Msa0763150 | AT5G16650.1 | 54.902 | 51 | 22 | 1 | 4 | 54 | 11 | 60 | 6.07e-11 | 54.7 |
Find 27 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGATTACTATGAGATTT+TGG | 0.205034 | 5_2:+21855580 | Msa0763150:CDS |
| ATTATCTTGTTTCTCTGTTT+TGG | 0.205842 | 5_2:+21855841 | Msa0763150:CDS |
| TTATTGTCAGGATTCTTATC+AGG | 0.253732 | 5_2:-21855671 | None:intergenic |
| ACAGATTAAACCTTTATTCT+TGG | 0.256184 | 5_2:-21854740 | None:intergenic |
| GTAGATTTGCTGTGCGTAAT+TGG | 0.280019 | 5_2:+21854767 | Msa0763150:five_prime_UTR |
| CTTATCAGGGTGCCATTTCA+TGG | 0.338061 | 5_2:-21855657 | None:intergenic |
| GATTCCATGACCAAGAATAA+AGG | 0.364161 | 5_2:+21854730 | Msa0763150:five_prime_UTR |
| ATAGAAAACTTGCCATGAAA+TGG | 0.412382 | 5_2:+21855645 | Msa0763150:CDS |
| TGGTTCTAGCCTGGTGGATA+AGG | 0.413461 | 5_2:+21854897 | Msa0763150:five_prime_UTR |
| TAAACCTTTATTCTTGGTCA+TGG | 0.433411 | 5_2:-21854734 | None:intergenic |
| TCAGCATCATTCTTATTGTC+AGG | 0.435149 | 5_2:-21855683 | None:intergenic |
| GAAAGCAAAGTAGTGGAAGA+TGG | 0.462215 | 5_2:+21855556 | Msa0763150:exon |
| TATTGTCAGGATTCTTATCA+GGG | 0.462954 | 5_2:-21855670 | None:intergenic |
| TACATATACCTCATATGCTT+CGG | 0.471997 | 5_2:-21855726 | None:intergenic |
| AAAGTAGTGGAAGATGGGTT+TGG | 0.472595 | 5_2:+21855562 | Msa0763150:exon |
| ACTCATATCCGAAGCATATG+AGG | 0.475266 | 5_2:+21855718 | Msa0763150:CDS |
| GAAAAGTGAAAGCAAAGTAG+TGG | 0.495138 | 5_2:+21855549 | Msa0763150:five_prime_UTR |
| AAAGCAAAGTAGTGGAAGAT+GGG | 0.505371 | 5_2:+21855557 | Msa0763150:exon |
| GGTGGATAAGGCAAACATAC+AGG | 0.505654 | 5_2:+21854909 | Msa0763150:five_prime_UTR |
| GATTTGCTGTGCGTAATTGG+AGG | 0.540099 | 5_2:+21854770 | Msa0763150:five_prime_UTR |
| GTATGTTTGCCTTATCCACC+AGG | 0.559232 | 5_2:-21854906 | None:intergenic |
| AAAGAAAGTCCTATCTTGAG+TGG | 0.579591 | 5_2:+21855522 | Msa0763150:five_prime_UTR |
| TATCCACCAGGCTAGAACCA+TGG | 0.582402 | 5_2:-21854894 | None:intergenic |
| AATGTGTGGACTTTCTCTGA+TGG | 0.591588 | 5_2:+21854702 | Msa0763150:five_prime_UTR |
| TTTCCATGGTTCTAGCCTGG+TGG | 0.591889 | 5_2:+21854891 | Msa0763150:five_prime_UTR |
| AGAGTGTCTACAAACAGAGC+AGG | 0.623091 | 5_2:-21854809 | None:intergenic |
| GACTGAAATGTATTAATGTG+TGG | 0.658305 | 5_2:+21854688 | Msa0763150:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTGATTACTATTTATA+TGG | + | chr5_2:21855093-21855112 | Msa0763150:intron | 15.0% |
| !! | AATAATAGATAAAATATCTG+AGG | - | chr5_2:21855126-21855145 | None:intergenic | 15.0% |
| !!! | TTTTCTGATTACTATTTATA+TGG | + | chr5_2:21855093-21855112 | Msa0763150:intron | 15.0% |
| !! | AATAATAGATAAAATATCTG+AGG | - | chr5_2:21855126-21855145 | None:intergenic | 15.0% |
| !! | TGCAAAATTAACATTTAAGT+TGG | + | chr5_2:21855061-21855080 | Msa0763150:intron | 20.0% |
| !! | TCTATTATTGTGTTCTTTAA+CGG | + | chr5_2:21855137-21855156 | Msa0763150:intron | 20.0% |
| !!! | ATTTTCACTATACTTTAACA+AGG | + | chr5_2:21855163-21855182 | Msa0763150:intron | 20.0% |
| !! | TTTATCTGTTACAACAAAAT+TGG | + | chr5_2:21855200-21855219 | Msa0763150:intron | 20.0% |
| !! | ATTATTATTGAACAAGACTA+TGG | - | chr5_2:21855463-21855482 | None:intergenic | 20.0% |
| !! | TGCAAAATTAACATTTAAGT+TGG | + | chr5_2:21855061-21855080 | Msa0763150:intron | 20.0% |
| !! | TCTATTATTGTGTTCTTTAA+CGG | + | chr5_2:21855137-21855156 | Msa0763150:intron | 20.0% |
| !!! | ATTTTCACTATACTTTAACA+AGG | + | chr5_2:21855163-21855182 | Msa0763150:intron | 20.0% |
| !! | TTTATCTGTTACAACAAAAT+TGG | + | chr5_2:21855200-21855219 | Msa0763150:intron | 20.0% |
| !! | ATTATTATTGAACAAGACTA+TGG | - | chr5_2:21855463-21855482 | None:intergenic | 20.0% |
| ! | ACAGATTAAACCTTTATTCT+TGG | - | chr5_2:21854743-21854762 | None:intergenic | 25.0% |
| ! | AATAACCATCATCATGTAAT+GGG | - | chr5_2:21854963-21854982 | None:intergenic | 25.0% |
| ! | AAATAACCATCATCATGTAA+TGG | - | chr5_2:21854964-21854983 | None:intergenic | 25.0% |
| ! | AATGTGGTATACTTAAAGTT+TGG | - | chr5_2:21855031-21855050 | None:intergenic | 25.0% |
| !! | TAATGCTGAAATTTTCTGTT+GGG | + | chr5_2:21855329-21855348 | Msa0763150:intron | 25.0% |
| !! | TTTGGATTACTATGAGATTT+TGG | + | chr5_2:21855580-21855599 | Msa0763150:CDS | 25.0% |
| ! | GTTTAATTGCTACAAAACTA+TGG | + | chr5_2:21855771-21855790 | Msa0763150:intron | 25.0% |
| !!! | ATTATCTTGTTTCTCTGTTT+TGG | + | chr5_2:21855841-21855860 | Msa0763150:CDS | 25.0% |
| ! | ACAGATTAAACCTTTATTCT+TGG | - | chr5_2:21854743-21854762 | None:intergenic | 25.0% |
| ! | AATAACCATCATCATGTAAT+GGG | - | chr5_2:21854963-21854982 | None:intergenic | 25.0% |
| ! | AAATAACCATCATCATGTAA+TGG | - | chr5_2:21854964-21854983 | None:intergenic | 25.0% |
| ! | AATGTGGTATACTTAAAGTT+TGG | - | chr5_2:21855031-21855050 | None:intergenic | 25.0% |
| !! | TAATGCTGAAATTTTCTGTT+GGG | + | chr5_2:21855329-21855348 | Msa0763150:intron | 25.0% |
| !! | TTTGGATTACTATGAGATTT+TGG | + | chr5_2:21855580-21855599 | Msa0763150:CDS | 25.0% |
| ! | GTTTAATTGCTACAAAACTA+TGG | + | chr5_2:21855771-21855790 | Msa0763150:intron | 25.0% |
| !!! | ATTATCTTGTTTCTCTGTTT+TGG | + | chr5_2:21855841-21855860 | Msa0763150:CDS | 25.0% |
| GACTGAAATGTATTAATGTG+TGG | + | chr5_2:21854688-21854707 | Msa0763150:five_prime_UTR | 30.0% | |
| TAAACCTTTATTCTTGGTCA+TGG | - | chr5_2:21854737-21854756 | None:intergenic | 30.0% | |
| TTACAGTTTCAAAAAAGGTC+GGG | - | chr5_2:21854844-21854863 | None:intergenic | 30.0% | |
| GTTACAGTTTCAAAAAAGGT+CGG | - | chr5_2:21854845-21854864 | None:intergenic | 30.0% | |
| CATCGTTACAGTTTCAAAAA+AGG | - | chr5_2:21854849-21854868 | None:intergenic | 30.0% | |
| ! | TGTTGCAAAAAGATTTTCCA+TGG | + | chr5_2:21854877-21854896 | Msa0763150:five_prime_UTR | 30.0% |
| ! | AATGGGTTTGATCAAAACAA+AGG | - | chr5_2:21854946-21854965 | None:intergenic | 30.0% |
| TTAAAGTTTGGCCTAATTAC+TGG | - | chr5_2:21855019-21855038 | None:intergenic | 30.0% | |
| TTTGCACTATGAAAAGAATG+TGG | - | chr5_2:21855047-21855066 | None:intergenic | 30.0% | |
| TTCAAAATTCCTGCTAGATA+GGG | + | chr5_2:21855228-21855247 | Msa0763150:intron | 30.0% | |
| ! | CTAATGCTGAAATTTTCTGT+TGG | + | chr5_2:21855328-21855347 | Msa0763150:intron | 30.0% |
| ! | AATGCTGAAATTTTCTGTTG+GGG | + | chr5_2:21855330-21855349 | Msa0763150:intron | 30.0% |
| !!! | AGGTTTTTTTGTCTTGTTTC+TGG | - | chr5_2:21855497-21855516 | None:intergenic | 30.0% |
| ATAGAAAACTTGCCATGAAA+TGG | + | chr5_2:21855645-21855664 | Msa0763150:CDS | 30.0% | |
| TATTGTCAGGATTCTTATCA+GGG | - | chr5_2:21855673-21855692 | None:intergenic | 30.0% | |
| TTATTGTCAGGATTCTTATC+AGG | - | chr5_2:21855674-21855693 | None:intergenic | 30.0% | |
| TACATATACCTCATATGCTT+CGG | - | chr5_2:21855729-21855748 | None:intergenic | 30.0% | |
| !! | TGTTTACTGTCTTTTGTTTG+AGG | + | chr5_2:21855887-21855906 | Msa0763150:CDS | 30.0% |
| GACTGAAATGTATTAATGTG+TGG | + | chr5_2:21854688-21854707 | Msa0763150:five_prime_UTR | 30.0% | |
| TAAACCTTTATTCTTGGTCA+TGG | - | chr5_2:21854737-21854756 | None:intergenic | 30.0% | |
| TTACAGTTTCAAAAAAGGTC+GGG | - | chr5_2:21854844-21854863 | None:intergenic | 30.0% | |
| GTTACAGTTTCAAAAAAGGT+CGG | - | chr5_2:21854845-21854864 | None:intergenic | 30.0% | |
| CATCGTTACAGTTTCAAAAA+AGG | - | chr5_2:21854849-21854868 | None:intergenic | 30.0% | |
| ! | TGTTGCAAAAAGATTTTCCA+TGG | + | chr5_2:21854877-21854896 | Msa0763150:five_prime_UTR | 30.0% |
| ! | AATGGGTTTGATCAAAACAA+AGG | - | chr5_2:21854946-21854965 | None:intergenic | 30.0% |
| TTAAAGTTTGGCCTAATTAC+TGG | - | chr5_2:21855019-21855038 | None:intergenic | 30.0% | |
| TTTGCACTATGAAAAGAATG+TGG | - | chr5_2:21855047-21855066 | None:intergenic | 30.0% | |
| TTCAAAATTCCTGCTAGATA+GGG | + | chr5_2:21855228-21855247 | Msa0763150:intron | 30.0% | |
| ! | CTAATGCTGAAATTTTCTGT+TGG | + | chr5_2:21855328-21855347 | Msa0763150:intron | 30.0% |
| ! | AATGCTGAAATTTTCTGTTG+GGG | + | chr5_2:21855330-21855349 | Msa0763150:intron | 30.0% |
| !!! | AGGTTTTTTTGTCTTGTTTC+TGG | - | chr5_2:21855497-21855516 | None:intergenic | 30.0% |
| ATAGAAAACTTGCCATGAAA+TGG | + | chr5_2:21855645-21855664 | Msa0763150:CDS | 30.0% | |
| TATTGTCAGGATTCTTATCA+GGG | - | chr5_2:21855673-21855692 | None:intergenic | 30.0% | |
| TTATTGTCAGGATTCTTATC+AGG | - | chr5_2:21855674-21855693 | None:intergenic | 30.0% | |
| TACATATACCTCATATGCTT+CGG | - | chr5_2:21855729-21855748 | None:intergenic | 30.0% | |
| !! | TGTTTACTGTCTTTTGTTTG+AGG | + | chr5_2:21855887-21855906 | Msa0763150:CDS | 30.0% |
| GATTCCATGACCAAGAATAA+AGG | + | chr5_2:21854730-21854749 | Msa0763150:five_prime_UTR | 35.0% | |
| TCAAACCCATTACATGATGA+TGG | + | chr5_2:21854955-21854974 | Msa0763150:intron | 35.0% | |
| ! | CTGACAAGGTTTCTAGAAAA+TGG | - | chr5_2:21854994-21855013 | None:intergenic | 35.0% |
| CTGTTACAACAAAATTGGAG+AGG | + | chr5_2:21855205-21855224 | Msa0763150:intron | 35.0% | |
| GTTCAAAATTCCTGCTAGAT+AGG | + | chr5_2:21855227-21855246 | Msa0763150:intron | 35.0% | |
| ACATATTTACCCTATCTAGC+AGG | - | chr5_2:21855240-21855259 | None:intergenic | 35.0% | |
| GTTGATCAGAAACTTCACTT+TGG | - | chr5_2:21855426-21855445 | None:intergenic | 35.0% | |
| ! | GATAGGACTTTCTTTTCTTC+AGG | - | chr5_2:21855517-21855536 | None:intergenic | 35.0% |
| AAAGAAAGTCCTATCTTGAG+TGG | + | chr5_2:21855522-21855541 | Msa0763150:five_prime_UTR | 35.0% | |
| ! | TTTTCTCTTCCACTCAAGAT+AGG | - | chr5_2:21855534-21855553 | None:intergenic | 35.0% |
| GAAAAGTGAAAGCAAAGTAG+TGG | + | chr5_2:21855549-21855568 | Msa0763150:five_prime_UTR | 35.0% | |
| ! | AAAGCAAAGTAGTGGAAGAT+GGG | + | chr5_2:21855557-21855576 | Msa0763150:exon | 35.0% |
| ! | GGATTACTATGAGATTTTGG+AGG | + | chr5_2:21855583-21855602 | Msa0763150:CDS | 35.0% |
| TCAGCATCATTCTTATTGTC+AGG | - | chr5_2:21855686-21855705 | None:intergenic | 35.0% | |
| ! | ACTGATCATTCATGTTTCTG+AGG | + | chr5_2:21855797-21855816 | Msa0763150:intron | 35.0% |
| GATTCCATGACCAAGAATAA+AGG | + | chr5_2:21854730-21854749 | Msa0763150:five_prime_UTR | 35.0% | |
| TCAAACCCATTACATGATGA+TGG | + | chr5_2:21854955-21854974 | Msa0763150:intron | 35.0% | |
| ! | CTGACAAGGTTTCTAGAAAA+TGG | - | chr5_2:21854994-21855013 | None:intergenic | 35.0% |
| CTGTTACAACAAAATTGGAG+AGG | + | chr5_2:21855205-21855224 | Msa0763150:intron | 35.0% | |
| GTTCAAAATTCCTGCTAGAT+AGG | + | chr5_2:21855227-21855246 | Msa0763150:intron | 35.0% | |
| ACATATTTACCCTATCTAGC+AGG | - | chr5_2:21855240-21855259 | None:intergenic | 35.0% | |
| GTTGATCAGAAACTTCACTT+TGG | - | chr5_2:21855426-21855445 | None:intergenic | 35.0% | |
| ! | GATAGGACTTTCTTTTCTTC+AGG | - | chr5_2:21855517-21855536 | None:intergenic | 35.0% |
| AAAGAAAGTCCTATCTTGAG+TGG | + | chr5_2:21855522-21855541 | Msa0763150:five_prime_UTR | 35.0% | |
| ! | TTTTCTCTTCCACTCAAGAT+AGG | - | chr5_2:21855534-21855553 | None:intergenic | 35.0% |
| GAAAAGTGAAAGCAAAGTAG+TGG | + | chr5_2:21855549-21855568 | Msa0763150:five_prime_UTR | 35.0% | |
| ! | AAAGCAAAGTAGTGGAAGAT+GGG | + | chr5_2:21855557-21855576 | Msa0763150:exon | 35.0% |
| ! | GGATTACTATGAGATTTTGG+AGG | + | chr5_2:21855583-21855602 | Msa0763150:CDS | 35.0% |
| TCAGCATCATTCTTATTGTC+AGG | - | chr5_2:21855686-21855705 | None:intergenic | 35.0% | |
| ! | ACTGATCATTCATGTTTCTG+AGG | + | chr5_2:21855797-21855816 | Msa0763150:intron | 35.0% |
| AATGTGTGGACTTTCTCTGA+TGG | + | chr5_2:21854702-21854721 | Msa0763150:five_prime_UTR | 40.0% | |
| !! | GTAGATTTGCTGTGCGTAAT+TGG | + | chr5_2:21854767-21854786 | Msa0763150:five_prime_UTR | 40.0% |
| CCTAATTACTGGAACTGACA+AGG | - | chr5_2:21855008-21855027 | None:intergenic | 40.0% | |
| CCTTGTCAGTTCCAGTAATT+AGG | + | chr5_2:21855005-21855024 | Msa0763150:intron | 40.0% | |
| ! | TTTTGACACACCATGTCTGT+CGG | + | chr5_2:21855285-21855304 | Msa0763150:intron | 40.0% |
| ! | GAAAGCAAAGTAGTGGAAGA+TGG | + | chr5_2:21855556-21855575 | Msa0763150:exon | 40.0% |
| ! | AAAGTAGTGGAAGATGGGTT+TGG | + | chr5_2:21855562-21855581 | Msa0763150:exon | 40.0% |
| ACTCATATCCGAAGCATATG+AGG | + | chr5_2:21855718-21855737 | Msa0763150:CDS | 40.0% | |
| AATGTGTGGACTTTCTCTGA+TGG | + | chr5_2:21854702-21854721 | Msa0763150:five_prime_UTR | 40.0% | |
| !! | GTAGATTTGCTGTGCGTAAT+TGG | + | chr5_2:21854767-21854786 | Msa0763150:five_prime_UTR | 40.0% |
| CCTAATTACTGGAACTGACA+AGG | - | chr5_2:21855008-21855027 | None:intergenic | 40.0% | |
| CCTTGTCAGTTCCAGTAATT+AGG | + | chr5_2:21855005-21855024 | Msa0763150:intron | 40.0% | |
| ! | TTTTGACACACCATGTCTGT+CGG | + | chr5_2:21855285-21855304 | Msa0763150:intron | 40.0% |
| ! | GAAAGCAAAGTAGTGGAAGA+TGG | + | chr5_2:21855556-21855575 | Msa0763150:exon | 40.0% |
| ! | AAAGTAGTGGAAGATGGGTT+TGG | + | chr5_2:21855562-21855581 | Msa0763150:exon | 40.0% |
| ACTCATATCCGAAGCATATG+AGG | + | chr5_2:21855718-21855737 | Msa0763150:CDS | 40.0% | |
| !! | GATTTGCTGTGCGTAATTGG+AGG | + | chr5_2:21854770-21854789 | Msa0763150:five_prime_UTR | 45.0% |
| ! | AGAGTGTCTACAAACAGAGC+AGG | - | chr5_2:21854812-21854831 | None:intergenic | 45.0% |
| !!! | GATTTTCCATGGTTCTAGCC+TGG | + | chr5_2:21854888-21854907 | Msa0763150:five_prime_UTR | 45.0% |
| GTATGTTTGCCTTATCCACC+AGG | - | chr5_2:21854909-21854928 | None:intergenic | 45.0% | |
| GGTGGATAAGGCAAACATAC+AGG | + | chr5_2:21854909-21854928 | Msa0763150:five_prime_UTR | 45.0% | |
| !! | CTTATCAGGGTGCCATTTCA+TGG | - | chr5_2:21855660-21855679 | None:intergenic | 45.0% |
| !! | GATTTGCTGTGCGTAATTGG+AGG | + | chr5_2:21854770-21854789 | Msa0763150:five_prime_UTR | 45.0% |
| ! | AGAGTGTCTACAAACAGAGC+AGG | - | chr5_2:21854812-21854831 | None:intergenic | 45.0% |
| !!! | GATTTTCCATGGTTCTAGCC+TGG | + | chr5_2:21854888-21854907 | Msa0763150:five_prime_UTR | 45.0% |
| GTATGTTTGCCTTATCCACC+AGG | - | chr5_2:21854909-21854928 | None:intergenic | 45.0% | |
| GGTGGATAAGGCAAACATAC+AGG | + | chr5_2:21854909-21854928 | Msa0763150:five_prime_UTR | 45.0% | |
| !! | CTTATCAGGGTGCCATTTCA+TGG | - | chr5_2:21855660-21855679 | None:intergenic | 45.0% |
| !! | TTTCCATGGTTCTAGCCTGG+TGG | + | chr5_2:21854891-21854910 | Msa0763150:five_prime_UTR | 50.0% |
| TATCCACCAGGCTAGAACCA+TGG | - | chr5_2:21854897-21854916 | None:intergenic | 50.0% | |
| !! | TGGTTCTAGCCTGGTGGATA+AGG | + | chr5_2:21854897-21854916 | Msa0763150:five_prime_UTR | 50.0% |
| ! | ACCATGTCTGTCGGTGTTTG+TGG | + | chr5_2:21855294-21855313 | Msa0763150:intron | 50.0% |
| TCCACAAACACCGACAGACA+TGG | - | chr5_2:21855298-21855317 | None:intergenic | 50.0% | |
| !! | TTTCCATGGTTCTAGCCTGG+TGG | + | chr5_2:21854891-21854910 | Msa0763150:five_prime_UTR | 50.0% |
| TATCCACCAGGCTAGAACCA+TGG | - | chr5_2:21854897-21854916 | None:intergenic | 50.0% | |
| !! | TGGTTCTAGCCTGGTGGATA+AGG | + | chr5_2:21854897-21854916 | Msa0763150:five_prime_UTR | 50.0% |
| ! | ACCATGTCTGTCGGTGTTTG+TGG | + | chr5_2:21855294-21855313 | Msa0763150:intron | 50.0% |
| TCCACAAACACCGACAGACA+TGG | - | chr5_2:21855298-21855317 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 21854653 | 21855914 | 21854653 | ID=Msa0763150;Name=Msa0763150 |
| chr5_2 | mRNA | 21854653 | 21855914 | 21854653 | ID=Msa0763150-mRNA-1;Parent=Msa0763150;Name=Msa0763150-mRNA-1;_AED=0.24;_eAED=0.24;_QI=355|0.5|0.33|0.66|0.5|0.33|3|0|86 |
| chr5_2 | exon | 21854653 | 21854930 | 21854653 | ID=Msa0763150-mRNA-1:exon:9067;Parent=Msa0763150-mRNA-1 |
| chr5_2 | exon | 21855498 | 21855739 | 21855498 | ID=Msa0763150-mRNA-1:exon:9068;Parent=Msa0763150-mRNA-1 |
| chr5_2 | exon | 21855819 | 21855914 | 21855819 | ID=Msa0763150-mRNA-1:exon:9069;Parent=Msa0763150-mRNA-1 |
| chr5_2 | five_prime_UTR | 21854653 | 21854930 | 21854653 | ID=Msa0763150-mRNA-1:five_prime_utr;Parent=Msa0763150-mRNA-1 |
| chr5_2 | five_prime_UTR | 21855498 | 21855574 | 21855498 | ID=Msa0763150-mRNA-1:five_prime_utr;Parent=Msa0763150-mRNA-1 |
| chr5_2 | CDS | 21855575 | 21855739 | 21855575 | ID=Msa0763150-mRNA-1:cds;Parent=Msa0763150-mRNA-1 |
| chr5_2 | CDS | 21855819 | 21855914 | 21855819 | ID=Msa0763150-mRNA-1:cds;Parent=Msa0763150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
