AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0372660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372660 MtrunA17_Chr5g0416481 88.854 314 20 2 1 314 1 299 0.0 538
Msa0372660 MtrunA17_Chr1g0204311 75.000 68 17 0 56 123 17 84 4.57e-29 108
Msa0372660 MtrunA17_Chr2g0297071 35.829 187 100 3 114 299 135 302 7.79e-28 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372660 AT2G02880.1 52.160 324 119 8 1 304 1 308 1.79e-98 293
Msa0372660 AT5G62270.1 32.673 202 116 2 114 314 199 381 6.52e-18 84.0
Msa0372660 AT5G62270.2 32.673 202 116 2 114 314 199 381 7.76e-18 84.0

Find 144 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCTTTGGATCAGTTTA+AGG 0.153210 3_1:+71310087 None:intergenic
TCCTAATGTCATTCATTATA+TGG 0.171102 3_1:+71310022 None:intergenic
TAAGTATATCTTCTTCTCTT+TGG 0.205774 3_1:+71311155 None:intergenic
CTGTGTTGGTGGTGCCAATC+TGG 0.232756 3_1:-71310562 Msa0372660:three_prime_UTR
TTCTATTCTAATTTAACTTC+TGG 0.232921 3_1:+71310364 None:intergenic
CCCTTCCCTCTCTTGGCATT+TGG 0.234727 3_1:+71310896 None:intergenic
GAAACTTGAGGAGGCGAAAT+TGG 0.248773 3_1:-71314942 Msa0372660:CDS
AACTGAAGGAAGCAAGTTTA+AGG 0.257838 3_1:-71310322 Msa0372660:three_prime_UTR
GAAAGGTGGGATTTATAGTT+TGG 0.258551 3_1:-71315035 Msa0372660:CDS
TTAAGGACATCAAATTAAAT+TGG 0.279303 3_1:-71310467 Msa0372660:three_prime_UTR
AAAATATTAAGAAGGATTAT+AGG 0.285810 3_1:-71315012 Msa0372660:CDS
TTAAACTGATCCAAAGCTTT+TGG 0.296668 3_1:-71310085 Msa0372660:three_prime_UTR
AAGTATATCTTCTTCTCTTT+GGG 0.299726 3_1:+71311156 None:intergenic
AAAATCAAGATGGAAATATA+TGG 0.299831 3_1:-71311186 Msa0372660:CDS
TCACATTGTCATTTCCTTCA+TGG 0.302593 3_1:+71310589 None:intergenic
TCCCATGGTGCTCGTGTCTT+TGG 0.306250 3_1:+71315187 None:intergenic
TGTATGAATGCTAGTTAGAT+TGG 0.340226 3_1:-71310408 Msa0372660:three_prime_UTR
TGAAACTGTAGGGTACAAAA+TGG 0.347785 3_1:-71310214 Msa0372660:three_prime_UTR
AAACATAAAATTAAGCAGTT+TGG 0.356591 3_1:+71309973 None:intergenic
TTGAAGAGATGAATGAGAAT+TGG 0.357713 3_1:-71315108 Msa0372660:CDS
TCTATTCTAATTTAACTTCT+GGG 0.364297 3_1:+71310365 None:intergenic
ATGTCGCTTTAACACTTAGA+AGG 0.364899 3_1:-71310509 Msa0372660:three_prime_UTR
ATTTGCTCTTAACAGAATCT+TGG 0.365991 3_1:-71310624 Msa0372660:three_prime_UTR
GTGCTCGTGTCTTTGGTGTT+AGG 0.368387 3_1:+71315194 None:intergenic
GGGGTGTGGTGGTGGTGAAG+GGG 0.369067 3_1:-71314919 Msa0372660:CDS
AAACTTGAGGAGGCGAAATT+GGG 0.372804 3_1:-71314941 Msa0372660:CDS
GAAGTCTTCTCTTCTTTGAA+TGG 0.374215 3_1:+71310830 None:intergenic
AGAAGTTGCATGCTGGGCTT+TGG 0.374544 3_1:-71314979 Msa0372660:CDS
CTTCTCTTCTTTGAATGGTT+GGG 0.374760 3_1:+71310835 None:intergenic
GATTGTTGTTGGGAGTTTGA+TGG 0.387873 3_1:+71315297 None:intergenic
CATTCGTCTTCACCGCTTCG+AGG 0.391057 3_1:+71315253 None:intergenic
TCTTCTCTTCTTTGAATGGT+TGG 0.391343 3_1:+71310834 None:intergenic
GCATGCTGGGCTTTGGAGTA+AGG 0.392569 3_1:-71314972 Msa0372660:CDS
TGTAGGGTACAAAATGGATT+TGG 0.397122 3_1:-71310208 Msa0372660:three_prime_UTR
AATTGGAATGAGAGGAGAAA+AGG 0.398586 3_1:-71315091 Msa0372660:CDS
AATTGCGTATAGCAAATTTC+AGG 0.398978 3_1:-71311113 Msa0372660:intron
TTCTTTGAATGGTTGGGTAG+AGG 0.407560 3_1:+71310841 None:intergenic
AAAGCTTTGGATCAGTTTAA+GGG 0.411256 3_1:+71310088 None:intergenic
GAAAATATTGCTGCCCAGAT+TGG 0.426421 3_1:+71310548 None:intergenic
TGGGTGAGGATTTCAAGCTT+TGG 0.430185 3_1:+71310042 None:intergenic
TCTTAACAGAATCTTGGTTA+AGG 0.437011 3_1:-71310618 Msa0372660:three_prime_UTR
TCTTTGAATGGTTGGGTAGA+GGG 0.440125 3_1:+71310842 None:intergenic
ATGTATTTCCACCCATCAAT+TGG 0.442948 3_1:+71310935 None:intergenic
AATGTATTAGGCAAATGCTT+TGG 0.443655 3_1:-71310113 Msa0372660:three_prime_UTR
CCCATATAATGAATGACATT+AGG 0.444766 3_1:-71310023 Msa0372660:three_prime_UTR
CCTAATGTCATTCATTATAT+GGG 0.446129 3_1:+71310023 None:intergenic
CGTTGTTCAGATCATTATTG+TGG 0.449866 3_1:+71311266 None:intergenic
GTGAGGATGACCAAAAGCTT+TGG 0.451099 3_1:+71310075 None:intergenic
ATTGGAATGAGAGGAGAAAA+GGG 0.452091 3_1:-71315090 Msa0372660:CDS
GATATTGTTTCCCACCCATC+AGG 0.452510 3_1:+71311211 None:intergenic
AACACTGCCCTTCCCTCTCT+TGG 0.455080 3_1:+71310889 None:intergenic
ACCTATCTGTATATATGATA+AGG 0.462165 3_1:-71312319 Msa0372660:intron
AGAAACAGAAGTTGCATGCT+GGG 0.463426 3_1:-71314985 Msa0372660:CDS
AGAAGAAGATATACTTATGC+AGG 0.469115 3_1:-71311149 Msa0372660:CDS
AAGAAACAGAAGTTGCATGC+TGG 0.474225 3_1:-71314986 Msa0372660:CDS
TGGAGAAGAGTGATTTGAAT+TGG 0.476363 3_1:+71315320 None:intergenic
GTGAGGATTTCAAGCTTTGG+AGG 0.476965 3_1:+71310045 None:intergenic
TGTGTTGGTGGTGCCAATCT+GGG 0.478282 3_1:-71310561 Msa0372660:three_prime_UTR
TAGTTTGGAAAATATTAAGA+AGG 0.479941 3_1:-71315020 Msa0372660:CDS
GAGAATTGACGGATTGTTGT+TGG 0.486189 3_1:+71315286 None:intergenic
AGCCGGAGGAGGCCAATTGA+TGG 0.487719 3_1:-71310947 Msa0372660:CDS
AGAATTGACGGATTGTTGTT+GGG 0.488814 3_1:+71315287 None:intergenic
TGAATGAGAATTGGAATGAG+AGG 0.489738 3_1:-71315099 Msa0372660:CDS
GTCTTTGGTGTTAGGTCTTG+TGG 0.490061 3_1:+71315202 None:intergenic
GAAATACATGATTGAGGTGG+TGG 0.492359 3_1:-71310921 Msa0372660:CDS
TTCGGAAGAAGTGGCGGACG+CGG 0.493653 3_1:-71315146 Msa0372660:CDS
GTTGTTCAGATCATTATTGT+GGG 0.496230 3_1:+71311267 None:intergenic
CCCCTTGGTAGGAGATAGCC+TGG 0.496275 3_1:-71310788 Msa0372660:exon
GAGGAGAAAAGGGTTGAAGA+AGG 0.496899 3_1:-71315080 Msa0372660:CDS
CAACTTTGCCGAGGTGTGAC+CGG 0.499946 3_1:-71310675 Msa0372660:three_prime_UTR
AGGAGGAGAATGTGAAAGGT+GGG 0.500011 3_1:-71315048 Msa0372660:CDS
TGTTGTTGGGAGTTTGATGG+TGG 0.501232 3_1:+71315300 None:intergenic
GTTGAAGAAGGAGAAGGTTG+AGG 0.502124 3_1:-71315068 Msa0372660:CDS
ACCCATCAATTGGCCTCCTC+CGG 0.503862 3_1:+71310945 None:intergenic
TCAAGACACACATATTTAGC+CGG 0.505354 3_1:-71310964 Msa0372660:CDS
AAGACGAATGGAACGAAGCA+TGG 0.512484 3_1:-71315240 Msa0372660:CDS
TCTCGCAAAATAGAAACAAA+AGG 0.514282 3_1:-71310708 Msa0372660:three_prime_UTR
GACCAGGCTATCTCCTACCA+AGG 0.517693 3_1:+71310786 None:intergenic
AAATCAAGATGGAAATATAT+GGG 0.521501 3_1:-71311185 Msa0372660:CDS
GCCGGAGGAGGCCAATTGAT+GGG 0.524719 3_1:-71310946 Msa0372660:CDS
GCACTGAGAAAGAAATAGAA+TGG 0.530490 3_1:-71310169 Msa0372660:three_prime_UTR
ACCTTATCATATATACAGAT+AGG 0.532381 3_1:+71312318 None:intergenic
GAGGAGGAGAATGTGAAAGG+TGG 0.533233 3_1:-71315049 Msa0372660:CDS
GAAGAAGGAGAAGGTTGAGG+AGG 0.538173 3_1:-71315065 Msa0372660:CDS
TGTCATTCATTATATGGGTG+AGG 0.538853 3_1:+71310028 None:intergenic
CTCGAAGCGGTGAAGACGAA+TGG 0.539770 3_1:-71315252 Msa0372660:CDS
TAAGGAGATTGAGAAACTTG+AGG 0.544087 3_1:-71314954 Msa0372660:CDS
CCAAATGCCAAGAGAGGGAA+GGG 0.544767 3_1:-71310896 Msa0372660:CDS
AACTTGAGGAGGCGAAATTG+GGG 0.545109 3_1:-71314940 Msa0372660:CDS
ATTTGGACCTTTGTATGTGT+TGG 0.545443 3_1:-71310191 Msa0372660:three_prime_UTR
GGTTAAGGTTCAAACCATGA+AGG 0.545596 3_1:-71310603 Msa0372660:three_prime_UTR
GCAGTATGTACAGTGAGTTA+AGG 0.545841 3_1:-71310484 Msa0372660:three_prime_UTR
ACCAAAGACACGAGCACCAT+GGG 0.550429 3_1:-71315188 Msa0372660:CDS
TGTTGTTGTGATTCTTCGAA+AGG 0.551025 3_1:+71315357 None:intergenic
AGGAGACGTGAATTTCGCTT+CGG 0.552773 3_1:-71315164 Msa0372660:CDS
TTCAAGCTTTGGAGGGCTAG+AGG 0.554324 3_1:+71310053 None:intergenic
AACGTATCTTCAAGAGGGAA+AGG 0.555056 3_1:-71310250 Msa0372660:three_prime_UTR
GATTGCGAGATGAGAATTGA+CGG 0.555084 3_1:+71315275 None:intergenic
GAATTTCGCTTCGGAAGAAG+TGG 0.555553 3_1:-71315155 Msa0372660:CDS
GATAAGAGTTACATTCCCCT+TGG 0.562876 3_1:-71310803 Msa0372660:CDS
TGAATGACATTAGGATGCAT+AGG 0.569589 3_1:-71310014 Msa0372660:three_prime_UTR
TGAGGATTTCAAGCTTTGGA+GGG 0.571831 3_1:+71310046 None:intergenic
TTTAGATCAAGCACAACTGA+AGG 0.573033 3_1:-71310336 Msa0372660:three_prime_UTR
GTTGAGGAGGAGAATGTGAA+AGG 0.575029 3_1:-71315052 Msa0372660:CDS
CACACATATTTAGCCGGAGG+AGG 0.582454 3_1:-71310958 Msa0372660:CDS
AAAAGGGTTGAAGAAGGAGA+AGG 0.586592 3_1:-71315074 Msa0372660:CDS
AATGTGATGTACTGTGTTGG+TGG 0.588310 3_1:-71310573 Msa0372660:three_prime_UTR
AGAGTTACATTCCCCTTGGT+AGG 0.590750 3_1:-71310799 Msa0372660:CDS
TACTTATGCAGGAATTCGAA+CGG 0.593879 3_1:-71311138 Msa0372660:CDS
AGACGAATGGAACGAAGCAT+GGG 0.595675 3_1:-71315239 Msa0372660:CDS
CTCAGTGCCAACACATACAA+AGG 0.597180 3_1:+71310184 None:intergenic
ACCAGGCTATCTCCTACCAA+GGG 0.602895 3_1:+71310787 None:intergenic
CTTGAGGAGGCGAAATTGGG+GGG 0.606909 3_1:-71314938 Msa0372660:CDS
TTGCCGAGGTGTGACCGGAA+TGG 0.607469 3_1:-71310670 Msa0372660:three_prime_UTR
ACCAAATGCCAAGAGAGGGA+AGG 0.608335 3_1:-71310897 Msa0372660:CDS
AAATTCACGTCTCCTTCCCA+TGG 0.608435 3_1:+71315172 None:intergenic
AGTGGCGGACGCGGAGACGA+AGG 0.608660 3_1:-71315137 Msa0372660:CDS
TGACATAACGTATCTTCAAG+AGG 0.617237 3_1:-71310256 Msa0372660:three_prime_UTR
CTCTGCAGAGGTCATTGCAG+TGG 0.620641 3_1:-71310746 Msa0372660:three_prime_UTR
CACCAAAGACACGAGCACCA+TGG 0.621256 3_1:-71315189 Msa0372660:CDS
AAGACACGAGCACCATGGGA+AGG 0.621580 3_1:-71315184 Msa0372660:CDS
TTTCGCTTCGGAAGAAGTGG+CGG 0.622582 3_1:-71315152 Msa0372660:CDS
ATACATAAAACTACATGACC+AGG 0.626226 3_1:+71310770 None:intergenic
GTTTGGTCTAATCCTAGTGT+CGG 0.629172 3_1:+71309990 None:intergenic
GTGGGACCAAATGCCAAGAG+AGG 0.630227 3_1:-71310902 Msa0372660:CDS
GACATAACGTATCTTCAAGA+GGG 0.631292 3_1:-71310255 Msa0372660:three_prime_UTR
GCTTTGGAGGGCTAGAGGTG+AGG 0.633112 3_1:+71310058 None:intergenic
CTGCCATTCCGGTCACACCT+CGG 0.639459 3_1:+71310667 None:intergenic
ACTTGAGGAGGCGAAATTGG+GGG 0.642354 3_1:-71314939 Msa0372660:CDS
GACAATGTGATGTACTGTGT+TGG 0.643437 3_1:-71310576 Msa0372660:three_prime_UTR
GGATGCATAGGACCGACACT+AGG 0.647618 3_1:-71310002 Msa0372660:three_prime_UTR
GTAGAGGGATCAGAGAGACT+TGG 0.651783 3_1:+71310857 None:intergenic
TGGGACCAAATGCCAAGAGA+GGG 0.653748 3_1:-71310901 Msa0372660:CDS
TCATCTCGCAATCCTCGAAG+CGG 0.654358 3_1:-71315265 Msa0372660:CDS
GGAATGGCAGCTGAAAATCT+CGG 0.657229 3_1:-71310654 Msa0372660:three_prime_UTR
TGATCACTGCAACTTTGCCG+AGG 0.672315 3_1:-71310684 Msa0372660:three_prime_UTR
GGAGGAGGCCAATTGATGGG+TGG 0.673463 3_1:-71310943 Msa0372660:CDS
AGACACACATATTTAGCCGG+AGG 0.692755 3_1:-71310961 Msa0372660:CDS
GGAGATTGAGAAACTTGAGG+AGG 0.693976 3_1:-71314951 Msa0372660:CDS
AAATACATGATTGAGGTGGT+GGG 0.711165 3_1:-71310920 Msa0372660:CDS
CCAGGCTATCTCCTACCAAG+GGG 0.715022 3_1:+71310788 None:intergenic
ACGAAGCATGGGAATCAGCG+TGG 0.715370 3_1:-71315228 Msa0372660:CDS
GTGGAAATACATGATTGAGG+TGG 0.721823 3_1:-71310924 Msa0372660:CDS
TGGGTGGAAATACATGATTG+AGG 0.745836 3_1:-71310927 Msa0372660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTATTTTTTTTAATGTATT+AGG - chr3_1:71315227-71315246 Msa0372660:CDS 10.0%
!! AAAATATTAAGAAGGATTAT+AGG - chr3_1:71310340-71310359 Msa0372660:three_prime_UTR 15.0%
!! TTAAACTATTTATGCAAATA+TGG - chr3_1:71311143-71311162 Msa0372660:CDS 15.0%
!! AATAAGATGCTTATAAAAAT+AGG - chr3_1:71311602-71311621 Msa0372660:intron 15.0%
!! ATAAGATGCTTATAAAAATA+GGG - chr3_1:71311603-71311622 Msa0372660:intron 15.0%
!!! TTAATTACTTTAAGCTTTTA+AGG - chr3_1:71313689-71313708 Msa0372660:intron 15.0%
!! TTTCTAAATATTTCAATTAG+CGG - chr3_1:71313861-71313880 Msa0372660:intron 15.0%
!! AAAACAATATAATGCTTAAT+AGG + chr3_1:71314295-71314314 None:intergenic 15.0%
!!! ATTAAGCATTATATTGTTTT+TGG - chr3_1:71314295-71314314 Msa0372660:intron 15.0%
!! TATAAAGTTATAAATGCTAA+AGG + chr3_1:71314341-71314360 None:intergenic 15.0%
!!! GTTTTTTTTTTTTTTTGTCT+TGG - chr3_1:71315398-71315417 Msa0372660:five_prime_UTR 15.0%
!! TAGTTTGGAAAATATTAAGA+AGG - chr3_1:71310332-71310351 Msa0372660:three_prime_UTR 20.0%
!!! GTTTTATTTTATGCTTTGTT+TGG - chr3_1:71310521-71310540 Msa0372660:three_prime_UTR 20.0%
!! ACTTATTTAAACTTATCTAC+TGG + chr3_1:71310887-71310906 None:intergenic 20.0%
!! ATCAATCAATTAAGAAACTA+TGG + chr3_1:71311169-71311188 None:intergenic 20.0%
!! ATGACATATTTATAAGTCAT+TGG + chr3_1:71311274-71311293 None:intergenic 20.0%
!!! TAGTGGTTTTAATTTATACT+TGG - chr3_1:71311972-71311991 Msa0372660:intron 20.0%
!!! AGTGGATGAAAATTAAATTT+TGG - chr3_1:71312152-71312171 Msa0372660:intron 20.0%
!!! TTTTTTCACTTTAATGTTGA+AGG - chr3_1:71312724-71312743 Msa0372660:intron 20.0%
!!! TTTGTTTCTTTGAATTTTGT+TGG - chr3_1:71313721-71313740 Msa0372660:intron 20.0%
!! AGATACATTAATATTAAAGC+AGG + chr3_1:71314027-71314046 None:intergenic 20.0%
!! AAAATCAAGATGGAAATATA+TGG - chr3_1:71314166-71314185 Msa0372660:intron 20.0%
!! AAATCAAGATGGAAATATAT+GGG - chr3_1:71314167-71314186 Msa0372660:intron 20.0%
!! TTAAGGACATCAAATTAAAT+TGG - chr3_1:71314885-71314904 Msa0372660:CDS 20.0%
!!! TCTATTCTAATTTAACTTCT+GGG + chr3_1:71314990-71315009 None:intergenic 20.0%
!!! TTCTATTCTAATTTAACTTC+TGG + chr3_1:71314991-71315010 None:intergenic 20.0%
!! AAACATAAAATTAAGCAGTT+TGG + chr3_1:71315382-71315401 None:intergenic 20.0%
!!! TGCATTTTCTTTTGTTATGA+AGG + chr3_1:71309973-71309992 None:intergenic 25.0%
! TGTGTCAATACTTCATTTAA+AGG + chr3_1:71310554-71310573 None:intergenic 25.0%
!!! GTTGTTTTCATAAGTTATTC+TGG - chr3_1:71310775-71310794 Msa0372660:exon 25.0%
!! GCTGTTTAAGATAGTTTATA+TGG - chr3_1:71311040-71311059 Msa0372660:intron 25.0%
! AAAGTATGATCCAATTTAAG+AGG + chr3_1:71311204-71311223 None:intergenic 25.0%
! TAGCTAATATGGAAACAATT+TGG - chr3_1:71311498-71311517 Msa0372660:intron 25.0%
! GCTTGTATAACAAATACTTA+TGG - chr3_1:71311568-71311587 Msa0372660:intron 25.0%
! ATCAATCAATTAACCAACTA+TGG + chr3_1:71311629-71311648 None:intergenic 25.0%
!!! GCTTAAAATTAAGAGCATTT+AGG + chr3_1:71311813-71311832 None:intergenic 25.0%
! AAATTGAATTCAAAGTGTAG+TGG - chr3_1:71311955-71311974 Msa0372660:intron 25.0%
!! AATCACACACTTGATATTTT+TGG - chr3_1:71312409-71312428 Msa0372660:intron 25.0%
!! TGATGGCATTTAAAATGAAA+AGG + chr3_1:71312886-71312905 None:intergenic 25.0%
! ACCTATCTGTATATATGATA+AGG - chr3_1:71313033-71313052 Msa0372660:intron 25.0%
! ACCTTATCATATATACAGAT+AGG + chr3_1:71313037-71313056 None:intergenic 25.0%
!! TTTTATAACACATCATGTCA+TGG + chr3_1:71313143-71313162 None:intergenic 25.0%
! GTGTTATAAAATATAGACCT+TGG - chr3_1:71313152-71313171 Msa0372660:intron 25.0%
!!! CTCAATTTTAAGGTTAATTC+TGG + chr3_1:71313356-71313375 None:intergenic 25.0%
! CTTAAAATTGAGTCATTACA+GGG - chr3_1:71313364-71313383 Msa0372660:intron 25.0%
! TTAAAATTGAGTCATTACAG+GGG - chr3_1:71313365-71313384 Msa0372660:intron 25.0%
!! GGTATTTTATGATTTTCTCA+CGG - chr3_1:71313387-71313406 Msa0372660:intron 25.0%
! TGATTGAAAGAGAAAGAAAA+GGG + chr3_1:71313476-71313495 None:intergenic 25.0%
! TAAAACAGAAATGAAAACAG+TGG + chr3_1:71313657-71313676 None:intergenic 25.0%
! CAAAATTCAAAGAAACAAAC+AGG + chr3_1:71313720-71313739 None:intergenic 25.0%
! AGCCAAAAAAATAAAGATAG+CGG + chr3_1:71313907-71313926 None:intergenic 25.0%
!!! CTATCTTTATTTTTTTGGCT+CGG - chr3_1:71313907-71313926 Msa0372660:intron 25.0%
!!! ATGTTTTTGAATTCAGAAGT+TGG + chr3_1:71314120-71314139 None:intergenic 25.0%
! ACAATATCGAAAAATCAAGA+TGG - chr3_1:71314156-71314175 Msa0372660:intron 25.0%
! AAGTATATCTTCTTCTCTTT+GGG + chr3_1:71314199-71314218 None:intergenic 25.0%
! TAAGTATATCTTCTTCTCTT+TGG + chr3_1:71314200-71314219 None:intergenic 25.0%
!!! AATTTAACTTCTGGGTTTTA+GGG + chr3_1:71314982-71315001 None:intergenic 25.0%
!!! TAATTTAACTTCTGGGTTTT+AGG + chr3_1:71314983-71315002 None:intergenic 25.0%
!! AAATGTTTTCATGAAACTGT+AGG - chr3_1:71315127-71315146 Msa0372660:CDS 25.0%
!! AATGTTTTCATGAAACTGTA+GGG - chr3_1:71315128-71315147 Msa0372660:CDS 25.0%
! CCTAATGTCATTCATTATAT+GGG + chr3_1:71315332-71315351 None:intergenic 25.0%
! TCCTAATGTCATTCATTATA+TGG + chr3_1:71315333-71315352 None:intergenic 25.0%
TTGAAGAGATGAATGAGAAT+TGG - chr3_1:71310244-71310263 Msa0372660:three_prime_UTR 30.0%
! AAGTTATTCTGGAGAGATTA+TGG - chr3_1:71310786-71310805 Msa0372660:exon 30.0%
TTAAATAAGTCAATCCAAGC+AGG - chr3_1:71310897-71310916 Msa0372660:CDS 30.0%
ATGATGTGTTCCTCTTAAAT+TGG - chr3_1:71311191-71311210 Msa0372660:CDS 30.0%
CATATTTATAAGTCATTGGC+TGG + chr3_1:71311270-71311289 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+CGG - chr3_1:71311347-71311366 Msa0372660:intron 30.0%
! ATTTGGCTTCAGTTTATCTT+TGG - chr3_1:71311515-71311534 Msa0372660:intron 30.0%
TATAAAAATAGGGCCATAGT+TGG - chr3_1:71311613-71311632 Msa0372660:intron 30.0%
ATGATGTGATGCTCTTAAAT+TGG - chr3_1:71311651-71311670 Msa0372660:intron 30.0%
CTTCGGAAAAATATATTGCT+TGG + chr3_1:71312123-71312142 None:intergenic 30.0%
! CAAGCAATATATTTTTCCGA+AGG - chr3_1:71312121-71312140 Msa0372660:intron 30.0%
TCTATTAGTGATCTGTTTCA+AGG + chr3_1:71312187-71312206 None:intergenic 30.0%
TTGAAACAGATCACTAATAG+AGG - chr3_1:71312186-71312205 Msa0372660:intron 30.0%
TGCGAGGAACATTATATATT+TGG - chr3_1:71312487-71312506 Msa0372660:intron 30.0%
CATTATATATTTGGTCGTCT+TGG - chr3_1:71312496-71312515 Msa0372660:intron 30.0%
!!! CTGCTGATATATCTAGTTTT+AGG - chr3_1:71312582-71312601 Msa0372660:intron 30.0%
!!! AACATGCTTTTTTGTGCAAT+TGG - chr3_1:71312635-71312654 Msa0372660:intron 30.0%
!!! ACATGCTTTTTTGTGCAATT+GGG - chr3_1:71312636-71312655 Msa0372660:intron 30.0%
! TTTTTGTGCAATTGGGTTTT+AGG - chr3_1:71312643-71312662 Msa0372660:intron 30.0%
AAAGCATAAACTACAAGATG+AGG + chr3_1:71312825-71312844 None:intergenic 30.0%
!! TATGCTTTTTGTGAAAGTTG+AGG - chr3_1:71312837-71312856 Msa0372660:intron 30.0%
! TTTTTGTGAAAGTTGAGGAT+TGG - chr3_1:71312842-71312861 Msa0372660:intron 30.0%
! AAAATGAAAAGGCATATGCT+AGG + chr3_1:71312875-71312894 None:intergenic 30.0%
TCTATCAGAATGCAATAGAA+AGG + chr3_1:71312915-71312934 None:intergenic 30.0%
ATTCTGATAGATGTTGAGAA+AGG - chr3_1:71312924-71312943 Msa0372660:intron 30.0%
TTCTGATAGATGTTGAGAAA+GGG - chr3_1:71312925-71312944 Msa0372660:intron 30.0%
ACTAGATTAATTTCGATCCA+AGG + chr3_1:71313172-71313191 None:intergenic 30.0%
! CCTGTAATGACTCAATTTTA+AGG + chr3_1:71313366-71313385 None:intergenic 30.0%
CCTTAAAATTGAGTCATTAC+AGG - chr3_1:71313363-71313382 Msa0372660:intron 30.0%
TAAAATTGAGTCATTACAGG+GGG - chr3_1:71313366-71313385 Msa0372660:intron 30.0%
GTGATTGAAAGAGAAAGAAA+AGG + chr3_1:71313477-71313496 None:intergenic 30.0%
GCCAAAAAAATAAAGATAGC+GGG + chr3_1:71313906-71313925 None:intergenic 30.0%
ACATAAACATTACCATCTCA+TGG - chr3_1:71313954-71313973 Msa0372660:intron 30.0%
!! AAAATACTGCAGTTGATAAG+AGG + chr3_1:71314060-71314079 None:intergenic 30.0%
GTTGTTCAGATCATTATTGT+GGG + chr3_1:71314088-71314107 None:intergenic 30.0%
AATTCAAAAACATGCCTGAT+GGG - chr3_1:71314127-71314146 Msa0372660:intron 30.0%
AGAAGAAGATATACTTATGC+AGG - chr3_1:71314203-71314222 Msa0372660:intron 30.0%
AATTGCGTATAGCAAATTTC+AGG - chr3_1:71314239-71314258 Msa0372660:intron 30.0%
ATACATAAAACTACATGACC+AGG + chr3_1:71314585-71314604 None:intergenic 30.0%
TCTCGCAAAATAGAAACAAA+AGG - chr3_1:71314644-71314663 Msa0372660:intron 30.0%
ATTTGCTCTTAACAGAATCT+TGG - chr3_1:71314728-71314747 Msa0372660:intron 30.0%
TCTTAACAGAATCTTGGTTA+AGG - chr3_1:71314734-71314753 Msa0372660:intron 30.0%
TGTATGAATGCTAGTTAGAT+TGG - chr3_1:71314944-71314963 Msa0372660:CDS 30.0%
AATGTATTAGGCAAATGCTT+TGG - chr3_1:71315239-71315258 Msa0372660:CDS 30.0%
!! AAAGCTTTGGATCAGTTTAA+GGG + chr3_1:71315267-71315286 None:intergenic 30.0%
!! AAAAGCTTTGGATCAGTTTA+AGG + chr3_1:71315268-71315287 None:intergenic 30.0%
! TTAAACTGATCCAAAGCTTT+TGG - chr3_1:71315267-71315286 Msa0372660:CDS 30.0%
CCCATATAATGAATGACATT+AGG - chr3_1:71315329-71315348 Msa0372660:CDS 30.0%
!!! TTTTTTTGTCTTGGATGTAG+TGG - chr3_1:71315407-71315426 Msa0372660:five_prime_UTR 30.0%
TGTTGTTGTGATTCTTCGAA+AGG + chr3_1:71309998-71310017 None:intergenic 35.0%
TGGAGAAGAGTGATTTGAAT+TGG + chr3_1:71310035-71310054 None:intergenic 35.0%
!! AGAATTGACGGATTGTTGTT+GGG + chr3_1:71310068-71310087 None:intergenic 35.0%
TGAATGAGAATTGGAATGAG+AGG - chr3_1:71310253-71310272 Msa0372660:three_prime_UTR 35.0%
AATTGGAATGAGAGGAGAAA+AGG - chr3_1:71310261-71310280 Msa0372660:three_prime_UTR 35.0%
ATTGGAATGAGAGGAGAAAA+GGG - chr3_1:71310262-71310281 Msa0372660:three_prime_UTR 35.0%
GAAAGGTGGGATTTATAGTT+TGG - chr3_1:71310317-71310336 Msa0372660:three_prime_UTR 35.0%
TAAGGAGATTGAGAAACTTG+AGG - chr3_1:71310398-71310417 Msa0372660:three_prime_UTR 35.0%
! AGACCTATTTTGCACCTTAT+AGG - chr3_1:71310676-71310695 Msa0372660:three_prime_UTR 35.0%
TGTCCTATAAGGTGCAAAAT+AGG + chr3_1:71310682-71310701 None:intergenic 35.0%
CTAAGCATGTATGTCCTATA+AGG + chr3_1:71310693-71310712 None:intergenic 35.0%
CTTATAGGACATACATGCTT+AGG - chr3_1:71310691-71310710 Msa0372660:three_prime_UTR 35.0%
!! AACACTTTGTGAGAGTGTTT+AGG - chr3_1:71310958-71310977 Msa0372660:CDS 35.0%
! AGAGTGTTTAGTATAGCTCA+CGG - chr3_1:71311419-71311438 Msa0372660:intron 35.0%
GCTCTTGAAGATAGCTAATA+TGG - chr3_1:71311487-71311506 Msa0372660:intron 35.0%
ACTGAAACTTCAGATTGAAG+TGG + chr3_1:71311770-71311789 None:intergenic 35.0%
CACGTATTGTTTGTAACCTA+TGG - chr3_1:71311837-71311856 Msa0372660:intron 35.0%
! CTCGGGTAGAGTTTAAAATT+TGG - chr3_1:71311869-71311888 Msa0372660:intron 35.0%
! GGGTAGAGTTTAAAATTTGG+AGG - chr3_1:71311872-71311891 Msa0372660:intron 35.0%
! TTGGAGGCTTTTAATGTGTT+TGG - chr3_1:71311888-71311907 Msa0372660:intron 35.0%
! CATCAGTTCTAGTTAAGATG+AGG - chr3_1:71312059-71312078 Msa0372660:intron 35.0%
! TTTCCGAAGGTATATTTGAG+TGG - chr3_1:71312134-71312153 Msa0372660:intron 35.0%
CATCCACTCAAATATACCTT+CGG + chr3_1:71312140-71312159 None:intergenic 35.0%
ATTAGTGATCTGTTTCAAGG+TGG + chr3_1:71312184-71312203 None:intergenic 35.0%
ACAGATCACTAATAGAGGAT+AGG - chr3_1:71312191-71312210 Msa0372660:intron 35.0%
TCAATAATCATAGCACGCAA+TGG + chr3_1:71312556-71312575 None:intergenic 35.0%
ACTAGATATATCAGCAGACT+TGG + chr3_1:71312579-71312598 None:intergenic 35.0%
! AACTCTACTAGTGTTGAAGT+TGG - chr3_1:71312678-71312697 Msa0372660:intron 35.0%
TCAGCACTTTCATAACAAAG+TGG + chr3_1:71312785-71312804 None:intergenic 35.0%
! CAATAGAAAGGCAGTATTGA+TGG + chr3_1:71312903-71312922 None:intergenic 35.0%
CTATTTCCAAGTCTTCTCTT+CGG - chr3_1:71313416-71313435 Msa0372660:intron 35.0%
AAAGAGGAGAAACAGAAACA+GGG + chr3_1:71313617-71313636 None:intergenic 35.0%
AAAAGAGGAGAAACAGAAAC+AGG + chr3_1:71313618-71313637 None:intergenic 35.0%
!!! GCCCGCTATCTTTATTTTTT+TGG - chr3_1:71313902-71313921 Msa0372660:intron 35.0%
CGTTGTTCAGATCATTATTG+TGG + chr3_1:71314089-71314108 None:intergenic 35.0%
GAATTCAAAAACATGCCTGA+TGG - chr3_1:71314126-71314145 Msa0372660:intron 35.0%
TACTTATGCAGGAATTCGAA+CGG - chr3_1:71314214-71314233 Msa0372660:intron 35.0%
TCAGGTGCTTATTAAAAGAC+AGG - chr3_1:71314257-71314276 Msa0372660:intron 35.0%
TCAAGACACACATATTTAGC+CGG - chr3_1:71314388-71314407 Msa0372660:intron 35.0%
ATGTATTTCCACCCATCAAT+TGG + chr3_1:71314420-71314439 None:intergenic 35.0%
AAATACATGATTGAGGTGGT+GGG - chr3_1:71314432-71314451 Msa0372660:intron 35.0%
CTTCTCTTCTTTGAATGGTT+GGG + chr3_1:71314520-71314539 None:intergenic 35.0%
TCTTCTCTTCTTTGAATGGT+TGG + chr3_1:71314521-71314540 None:intergenic 35.0%
GAAGTCTTCTCTTCTTTGAA+TGG + chr3_1:71314525-71314544 None:intergenic 35.0%
! GTTTTATGTATTCTCTGCAG+AGG - chr3_1:71314594-71314613 Msa0372660:intron 35.0%
! TCACATTGTCATTTCCTTCA+TGG + chr3_1:71314766-71314785 None:intergenic 35.0%
!! ATGTCGCTTTAACACTTAGA+AGG - chr3_1:71314843-71314862 Msa0372660:intron 35.0%
TTTAGATCAAGCACAACTGA+AGG - chr3_1:71315016-71315035 Msa0372660:CDS 35.0%
AACTGAAGGAAGCAAGTTTA+AGG - chr3_1:71315030-71315049 Msa0372660:CDS 35.0%
TGACATAACGTATCTTCAAG+AGG - chr3_1:71315096-71315115 Msa0372660:CDS 35.0%
GACATAACGTATCTTCAAGA+GGG - chr3_1:71315097-71315116 Msa0372660:CDS 35.0%
TGAAACTGTAGGGTACAAAA+TGG - chr3_1:71315138-71315157 Msa0372660:CDS 35.0%
! TGTAGGGTACAAAATGGATT+TGG - chr3_1:71315144-71315163 Msa0372660:CDS 35.0%
ATTTGGACCTTTGTATGTGT+TGG - chr3_1:71315161-71315180 Msa0372660:CDS 35.0%
GCACTGAGAAAGAAATAGAA+TGG - chr3_1:71315183-71315202 Msa0372660:CDS 35.0%
TGTCATTCATTATATGGGTG+AGG + chr3_1:71315327-71315346 None:intergenic 35.0%
TGAATGACATTAGGATGCAT+AGG - chr3_1:71315338-71315357 Msa0372660:CDS 35.0%
! GATTGTTGTTGGGAGTTTGA+TGG + chr3_1:71310058-71310077 None:intergenic 40.0%
!! GAGAATTGACGGATTGTTGT+TGG + chr3_1:71310069-71310088 None:intergenic 40.0%
GATTGCGAGATGAGAATTGA+CGG + chr3_1:71310080-71310099 None:intergenic 40.0%
AAAAGGGTTGAAGAAGGAGA+AGG - chr3_1:71310278-71310297 Msa0372660:three_prime_UTR 40.0%
AAGAAACAGAAGTTGCATGC+TGG - chr3_1:71310366-71310385 Msa0372660:three_prime_UTR 40.0%
AGAAACAGAAGTTGCATGCT+GGG - chr3_1:71310367-71310386 Msa0372660:three_prime_UTR 40.0%
AAACTTGAGGAGGCGAAATT+GGG - chr3_1:71310411-71310430 Msa0372660:three_prime_UTR 40.0%
!! TGAAGTATTGACACAGACAC+CGG - chr3_1:71310559-71310578 Msa0372660:three_prime_UTR 40.0%
! AGAGTGTTTAGGATAGCTCA+TGG - chr3_1:71310969-71310988 Msa0372660:CDS 40.0%
TAGCTCATGGAAACAGCTTA+TGG - chr3_1:71310982-71311001 Msa0372660:intron 40.0%
AGCTCATGGAAACAGCTTAT+GGG - chr3_1:71310983-71311002 Msa0372660:intron 40.0%
! ACAGAAAGAGCTTTATGAGC+CGG + chr3_1:71311369-71311388 None:intergenic 40.0%
CATTGTGTACATGTCATTGC+TGG + chr3_1:71311688-71311707 None:intergenic 40.0%
! AGAGCATTTAGGATCAGCAT+AGG + chr3_1:71311802-71311821 None:intergenic 40.0%
GGTTACAAACAATACGTGCT+GGG + chr3_1:71311835-71311854 None:intergenic 40.0%
AGGTTACAAACAATACGTGC+TGG + chr3_1:71311836-71311855 None:intergenic 40.0%
! AACCTATGGCTTGTGTTTCT+CGG - chr3_1:71311851-71311870 Msa0372660:intron 40.0%
TCATCGCCATCTATAACCTA+GGG + chr3_1:71312238-71312257 None:intergenic 40.0%
TTCATCGCCATCTATAACCT+AGG + chr3_1:71312239-71312258 None:intergenic 40.0%
ATGTTGAGAAAGGGTAGCAA+AGG - chr3_1:71312934-71312953 Msa0372660:intron 40.0%
ACGCACACTGAAATAGATGT+AGG - chr3_1:71313116-71313135 Msa0372660:intron 40.0%
! TTTAGAGGCTATGCCTGTTT+TGG - chr3_1:71313572-71313591 Msa0372660:intron 40.0%
CACGAAACACGAAGAAAAAG+AGG + chr3_1:71313633-71313652 None:intergenic 40.0%
! CTCTTTTTCTTCGTGTTTCG+TGG - chr3_1:71313631-71313650 Msa0372660:intron 40.0%
!! AAATAAAGATAGCGGGCTAC+CGG + chr3_1:71313899-71313918 None:intergenic 40.0%
ATGTTGTCAGTCCTGTATAG+CGG + chr3_1:71313938-71313957 None:intergenic 40.0%
ACAACTATGATGCCATGAGA+TGG + chr3_1:71313969-71313988 None:intergenic 40.0%
!! CTGCAGTTGATAAGAGGATT+AGG + chr3_1:71314054-71314073 None:intergenic 40.0%
TGGGTGGAAATACATGATTG+AGG - chr3_1:71314425-71314444 Msa0372660:intron 40.0%
GTGGAAATACATGATTGAGG+TGG - chr3_1:71314428-71314447 Msa0372660:intron 40.0%
GAAATACATGATTGAGGTGG+TGG - chr3_1:71314431-71314450 Msa0372660:intron 40.0%
TCTTTGAATGGTTGGGTAGA+GGG + chr3_1:71314513-71314532 None:intergenic 40.0%
TTCTTTGAATGGTTGGGTAG+AGG + chr3_1:71314514-71314533 None:intergenic 40.0%
GATAAGAGTTACATTCCCCT+TGG - chr3_1:71314549-71314568 Msa0372660:intron 40.0%
GGTTAAGGTTCAAACCATGA+AGG - chr3_1:71314749-71314768 Msa0372660:intron 40.0%
GACAATGTGATGTACTGTGT+TGG - chr3_1:71314776-71314795 Msa0372660:intron 40.0%
AATGTGATGTACTGTGTTGG+TGG - chr3_1:71314779-71314798 Msa0372660:intron 40.0%
GAAAATATTGCTGCCCAGAT+TGG + chr3_1:71314807-71314826 None:intergenic 40.0%
GCAGTATGTACAGTGAGTTA+AGG - chr3_1:71314868-71314887 Msa0372660:intron 40.0%
AACGTATCTTCAAGAGGGAA+AGG - chr3_1:71315102-71315121 Msa0372660:CDS 40.0%
!! TGAGGATTTCAAGCTTTGGA+GGG + chr3_1:71315309-71315328 None:intergenic 40.0%
GTTTGGTCTAATCCTAGTGT+CGG + chr3_1:71315365-71315384 None:intergenic 40.0%
TGTTGTTGGGAGTTTGATGG+TGG + chr3_1:71310055-71310074 None:intergenic 45.0%
AAGACGAATGGAACGAAGCA+TGG - chr3_1:71310112-71310131 Msa0372660:three_prime_UTR 45.0%
AGACGAATGGAACGAAGCAT+GGG - chr3_1:71310113-71310132 Msa0372660:three_prime_UTR 45.0%
!! GTCTTTGGTGTTAGGTCTTG+TGG + chr3_1:71310153-71310172 None:intergenic 45.0%
AAATTCACGTCTCCTTCCCA+TGG + chr3_1:71310183-71310202 None:intergenic 45.0%
AGGAGACGTGAATTTCGCTT+CGG - chr3_1:71310188-71310207 Msa0372660:three_prime_UTR 45.0%
GAATTTCGCTTCGGAAGAAG+TGG - chr3_1:71310197-71310216 Msa0372660:three_prime_UTR 45.0%
GAGGAGAAAAGGGTTGAAGA+AGG - chr3_1:71310272-71310291 Msa0372660:three_prime_UTR 45.0%
GTTGAAGAAGGAGAAGGTTG+AGG - chr3_1:71310284-71310303 Msa0372660:three_prime_UTR 45.0%
GTTGAGGAGGAGAATGTGAA+AGG - chr3_1:71310300-71310319 Msa0372660:three_prime_UTR 45.0%
AGGAGGAGAATGTGAAAGGT+GGG - chr3_1:71310304-71310323 Msa0372660:three_prime_UTR 45.0%
GGAGATTGAGAAACTTGAGG+AGG - chr3_1:71310401-71310420 Msa0372660:three_prime_UTR 45.0%
GAAACTTGAGGAGGCGAAAT+TGG - chr3_1:71310410-71310429 Msa0372660:three_prime_UTR 45.0%
AACTTGAGGAGGCGAAATTG+GGG - chr3_1:71310412-71310431 Msa0372660:three_prime_UTR 45.0%
ATCGCATACGTGTCAGTTTC+TGG + chr3_1:71311243-71311262 None:intergenic 45.0%
! AAGAGCTTTATGAGCCGGTT+TGG + chr3_1:71311364-71311383 None:intergenic 45.0%
TGTGTACATGTCATTGCTGG+TGG + chr3_1:71311685-71311704 None:intergenic 45.0%
GATCGAATGTAACGACACGT+TGG - chr3_1:71311725-71311744 Msa0372660:intron 45.0%
ATGTAACGACACGTTGGTGT+TGG - chr3_1:71311731-71311750 Msa0372660:intron 45.0%
! TGTAACGACACGTTGGTGTT+GGG - chr3_1:71311732-71311751 Msa0372660:intron 45.0%
! ACCTATGGCTTGTGTTTCTC+GGG - chr3_1:71311852-71311871 Msa0372660:intron 45.0%
CCATCTATAACCTAGGGACT+AGG + chr3_1:71312232-71312251 None:intergenic 45.0%
CCTAGTCCCTAGGTTATAGA+TGG - chr3_1:71312229-71312248 Msa0372660:intron 45.0%
ATGTGTAGAGAAGATGTGCG+AGG - chr3_1:71312471-71312490 Msa0372660:intron 45.0%
TGAGAAAGGGTAGCAAAGGT+AGG - chr3_1:71312938-71312957 Msa0372660:intron 45.0%
CGTGTTCCAAAAGCAAGTAG+TGG - chr3_1:71313266-71313285 Msa0372660:intron 45.0%
CAAAAGCAAGTAGTGGTCAC+CGG - chr3_1:71313273-71313292 Msa0372660:intron 45.0%
AAAAGCAAGTAGTGGTCACC+GGG - chr3_1:71313274-71313293 Msa0372660:intron 45.0%
GTTGCATTCTTGTTGCAGCA+TGG - chr3_1:71313296-71313315 Msa0372660:intron 45.0%
TTCACACCGAAGAGAAGACT+TGG + chr3_1:71313425-71313444 None:intergenic 45.0%
! AAGTCTTCTCTTCGGTGTGA+AGG - chr3_1:71313424-71313443 Msa0372660:intron 45.0%
GGGAAAGTGAAGAGTTGAGA+GGG + chr3_1:71313456-71313475 None:intergenic 45.0%
AGGGAAAGTGAAGAGTTGAG+AGG + chr3_1:71313457-71313476 None:intergenic 45.0%
GCATAGCCTCTAAACAAAGG+AGG + chr3_1:71313566-71313585 None:intergenic 45.0%
CAGGCATAGCCTCTAAACAA+AGG + chr3_1:71313569-71313588 None:intergenic 45.0%
AAACAGAGTGGCTCCAAAAC+AGG + chr3_1:71313588-71313607 None:intergenic 45.0%
!! AATAAAGATAGCGGGCTACC+GGG + chr3_1:71313898-71313917 None:intergenic 45.0%
TCAAAAACATGCCTGATGGG+TGG - chr3_1:71314130-71314149 Msa0372660:intron 45.0%
! CAAAAACATGCCTGATGGGT+GGG - chr3_1:71314131-71314150 Msa0372660:intron 45.0%
GATATTGTTTCCCACCCATC+AGG + chr3_1:71314144-71314163 None:intergenic 45.0%
AGACACACATATTTAGCCGG+AGG - chr3_1:71314391-71314410 Msa0372660:intron 45.0%
AGAGTTACATTCCCCTTGGT+AGG - chr3_1:71314553-71314572 Msa0372660:intron 45.0%
! GAGATTTTCAGCTGCCATTC+CGG + chr3_1:71314699-71314718 None:intergenic 45.0%
GGAATGGCAGCTGAAAATCT+CGG - chr3_1:71314698-71314717 Msa0372660:intron 45.0%
CTCAGTGCCAACACATACAA+AGG + chr3_1:71315171-71315190 None:intergenic 45.0%
GTGAGGATGACCAAAAGCTT+TGG + chr3_1:71315280-71315299 None:intergenic 45.0%
! GTGAGGATTTCAAGCTTTGG+AGG + chr3_1:71315310-71315329 None:intergenic 45.0%
TGGGTGAGGATTTCAAGCTT+TGG + chr3_1:71315313-71315332 None:intergenic 45.0%
TCATCTCGCAATCCTCGAAG+CGG - chr3_1:71310087-71310106 Msa0372660:three_prime_UTR 50.0%
!! GTGCTCGTGTCTTTGGTGTT+AGG + chr3_1:71310161-71310180 None:intergenic 50.0%
ACCAAAGACACGAGCACCAT+GGG - chr3_1:71310164-71310183 Msa0372660:three_prime_UTR 50.0%
TTTCGCTTCGGAAGAAGTGG+CGG - chr3_1:71310200-71310219 Msa0372660:three_prime_UTR 50.0%
GAAGAAGGAGAAGGTTGAGG+AGG - chr3_1:71310287-71310306 Msa0372660:three_prime_UTR 50.0%
GAGGAGGAGAATGTGAAAGG+TGG - chr3_1:71310303-71310322 Msa0372660:three_prime_UTR 50.0%
AGAAGTTGCATGCTGGGCTT+TGG - chr3_1:71310373-71310392 Msa0372660:three_prime_UTR 50.0%
ACTTGAGGAGGCGAAATTGG+GGG - chr3_1:71310413-71310432 Msa0372660:three_prime_UTR 50.0%
TAGACGTGTCAGTGTTCGTC+CGG + chr3_1:71310581-71310600 None:intergenic 50.0%
!! AAGAGCTCTAAGAGCCTGCT+TGG + chr3_1:71310914-71310933 None:intergenic 50.0%
! GCATACGTGTCAGTTTCTGG+CGG + chr3_1:71311240-71311259 None:intergenic 50.0%
!! ACGTTGGTGTTGGGACATGT+CGG - chr3_1:71311741-71311760 Msa0372660:intron 50.0%
ACCCGAGAAACACAAGCCAT+AGG + chr3_1:71311856-71311875 None:intergenic 50.0%
! GAATAGCTTGCCTAGTCCCT+AGG - chr3_1:71312219-71312238 Msa0372660:intron 50.0%
AACGCAACATGGCAGTGTGA+CGG + chr3_1:71313216-71313235 None:intergenic 50.0%
! CGGTGACCACTACTTGCTTT+TGG + chr3_1:71313275-71313294 None:intergenic 50.0%
GCTGCAACAAGAATGCAACC+CGG + chr3_1:71313295-71313314 None:intergenic 50.0%
AGTGAAGAGTTGAGAGGGTG+TGG + chr3_1:71313451-71313470 None:intergenic 50.0%
! TGGTTTGCACTTCACAGCAG+AGG + chr3_1:71313499-71313518 None:intergenic 50.0%
TGAAGTGCAAACCAGACGCT+GGG - chr3_1:71313505-71313524 Msa0372660:intron 50.0%
CCTCTAAACAAAGGAGGCGA+TGG + chr3_1:71313560-71313579 None:intergenic 50.0%
! CCATCGCCTCCTTTGTTTAG+AGG - chr3_1:71313557-71313576 Msa0372660:intron 50.0%
ACAGGGAGACAGAAACAGAG+TGG + chr3_1:71313600-71313619 None:intergenic 50.0%
CACACATATTTAGCCGGAGG+AGG - chr3_1:71314394-71314413 Msa0372660:intron 50.0%
TGGGACCAAATGCCAAGAGA+GGG - chr3_1:71314451-71314470 Msa0372660:intron 50.0%
ACCAAATGCCAAGAGAGGGA+AGG - chr3_1:71314455-71314474 Msa0372660:intron 50.0%
CCAAATGCCAAGAGAGGGAA+GGG - chr3_1:71314456-71314475 Msa0372660:intron 50.0%
GTAGAGGGATCAGAGAGACT+TGG + chr3_1:71314498-71314517 None:intergenic 50.0%
ACCAGGCTATCTCCTACCAA+GGG + chr3_1:71314568-71314587 None:intergenic 50.0%
TGATCACTGCAACTTTGCCG+AGG - chr3_1:71314668-71314687 Msa0372660:intron 50.0%
!! TGTGTTGGTGGTGCCAATCT+GGG - chr3_1:71314791-71314810 Msa0372660:intron 50.0%
!! TTCAAGCTTTGGAGGGCTAG+AGG + chr3_1:71315302-71315321 None:intergenic 50.0%
CATTCGTCTTCACCGCTTCG+AGG + chr3_1:71310102-71310121 None:intergenic 55.0%
CTCGAAGCGGTGAAGACGAA+TGG - chr3_1:71310100-71310119 Msa0372660:three_prime_UTR 55.0%
ACGAAGCATGGGAATCAGCG+TGG - chr3_1:71310124-71310143 Msa0372660:three_prime_UTR 55.0%
CACCAAAGACACGAGCACCA+TGG - chr3_1:71310163-71310182 Msa0372660:three_prime_UTR 55.0%
TCCCATGGTGCTCGTGTCTT+TGG + chr3_1:71310168-71310187 None:intergenic 55.0%
AAGACACGAGCACCATGGGA+AGG - chr3_1:71310168-71310187 Msa0372660:three_prime_UTR 55.0%
!! GCATGCTGGGCTTTGGAGTA+AGG - chr3_1:71310380-71310399 Msa0372660:three_prime_UTR 55.0%
CTTGAGGAGGCGAAATTGGG+GGG - chr3_1:71310414-71310433 Msa0372660:three_prime_UTR 55.0%
ACTGCCATGTTGCGTTGCAG+TGG - chr3_1:71313220-71313239 Msa0372660:intron 55.0%
CTGCCATGTTGCGTTGCAGT+GGG - chr3_1:71313221-71313240 Msa0372660:intron 55.0%
TGGAACACGACACTGTGCGT+GGG + chr3_1:71313255-71313274 None:intergenic 55.0%
TTGGAACACGACACTGTGCG+TGG + chr3_1:71313256-71313275 None:intergenic 55.0%
GTGAAGTGCAAACCAGACGC+TGG - chr3_1:71313504-71313523 Msa0372660:intron 55.0%
GAAGTGCAAACCAGACGCTG+GGG - chr3_1:71313506-71313525 Msa0372660:intron 55.0%
GCGATGGCAGTGGTTAGAGA+CGG + chr3_1:71313544-71313563 None:intergenic 55.0%
AACAAAGGAGGCGATGGCAG+TGG + chr3_1:71313554-71313573 None:intergenic 55.0%
! GTCAGTCCTGTATAGCGGAG+CGG + chr3_1:71313933-71313952 None:intergenic 55.0%
! ACCCATCAATTGGCCTCCTC+CGG + chr3_1:71314410-71314429 None:intergenic 55.0%
GTGGGACCAAATGCCAAGAG+AGG - chr3_1:71314450-71314469 Msa0372660:intron 55.0%
CCCTTCCCTCTCTTGGCATT+TGG + chr3_1:71314459-71314478 None:intergenic 55.0%
AACACTGCCCTTCCCTCTCT+TGG + chr3_1:71314466-71314485 None:intergenic 55.0%
CCAGGCTATCTCCTACCAAG+GGG + chr3_1:71314567-71314586 None:intergenic 55.0%
GACCAGGCTATCTCCTACCA+AGG + chr3_1:71314569-71314588 None:intergenic 55.0%
CTCTGCAGAGGTCATTGCAG+TGG - chr3_1:71314606-71314625 Msa0372660:intron 55.0%
CAACTTTGCCGAGGTGTGAC+CGG - chr3_1:71314677-71314696 Msa0372660:intron 55.0%
!! CTGTGTTGGTGGTGCCAATC+TGG - chr3_1:71314790-71314809 Msa0372660:intron 55.0%
GGATGCATAGGACCGACACT+AGG - chr3_1:71315350-71315369 Msa0372660:CDS 55.0%
!! TTCGGAAGAAGTGGCGGACG+CGG - chr3_1:71310206-71310225 Msa0372660:three_prime_UTR 60.0%
! GAAATTGGGGGGTGTGGTGG+TGG - chr3_1:71310425-71310444 Msa0372660:three_prime_UTR 60.0%
GCAACATGGCAGTGTGACGG+CGG + chr3_1:71313213-71313232 None:intergenic 60.0%
CCACCCACTGCAACGCAACA+TGG + chr3_1:71313227-71313246 None:intergenic 60.0%
CCATGTTGCGTTGCAGTGGG+TGG - chr3_1:71313224-71313243 Msa0372660:intron 60.0%
TGTTGCGTTGCAGTGGGTGG+CGG - chr3_1:71313227-71313246 Msa0372660:intron 60.0%
GAACACGACACTGTGCGTGG+GGG + chr3_1:71313253-71313272 None:intergenic 60.0%
GGAACACGACACTGTGCGTG+GGG + chr3_1:71313254-71313273 None:intergenic 60.0%
GGCAGTGGTTAGAGACGGCT+GGG + chr3_1:71313539-71313558 None:intergenic 60.0%
TGGCAGTGGTTAGAGACGGC+TGG + chr3_1:71313540-71313559 None:intergenic 60.0%
TTAGCGGCCATCCTGCAACC+CGG - chr3_1:71313877-71313896 Msa0372660:intron 60.0%
AGCCGGAGGAGGCCAATTGA+TGG - chr3_1:71314405-71314424 Msa0372660:intron 60.0%
GCCGGAGGAGGCCAATTGAT+GGG - chr3_1:71314406-71314425 Msa0372660:intron 60.0%
GGAGGAGGCCAATTGATGGG+TGG - chr3_1:71314409-71314428 Msa0372660:intron 60.0%
CCCCTTGGTAGGAGATAGCC+TGG - chr3_1:71314564-71314583 Msa0372660:intron 60.0%
TTGCCGAGGTGTGACCGGAA+TGG - chr3_1:71314682-71314701 Msa0372660:intron 60.0%
CTGCCATTCCGGTCACACCT+CGG + chr3_1:71314688-71314707 None:intergenic 60.0%
!! GCTTTGGAGGGCTAGAGGTG+AGG + chr3_1:71315297-71315316 None:intergenic 60.0%
GGAGGCGAAATTGGGGGGTG+TGG - chr3_1:71310419-71310438 Msa0372660:three_prime_UTR 65.0%
! GGCGAAATTGGGGGGTGTGG+TGG - chr3_1:71310422-71310441 Msa0372660:three_prime_UTR 65.0%
!! GGGGGTGTGGTGGTGGTGAA+GGG - chr3_1:71310432-71310451 Msa0372660:three_prime_UTR 65.0%
!! GGGGTGTGGTGGTGGTGAAG+GGG - chr3_1:71310433-71310452 Msa0372660:three_prime_UTR 65.0%
!! ATAGCGGGCTACCGGGTTGC+AGG + chr3_1:71313891-71313910 None:intergenic 65.0%
!! AGTGGCGGACGCGGAGACGA+AGG - chr3_1:71310215-71310234 Msa0372660:three_prime_UTR 70.0%
!! GGGGGGTGTGGTGGTGGTGA+AGG - chr3_1:71310431-71310450 Msa0372660:three_prime_UTR 70.0%
GGGACTGAGTCCCCAGCGTC+TGG + chr3_1:71313519-71313538 None:intergenic 70.0%
CGGGCTACCGGGTTGCAGGA+TGG + chr3_1:71313887-71313906 None:intergenic 70.0%
GCTCGGCCGCTCCGCTATAC+AGG - chr3_1:71313924-71313943 Msa0372660:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 71309937 71315437 71309937 ID=Msa0372660;Name=Msa0372660
chr3_1 mRNA 71309937 71315437 71309937 ID=Msa0372660-mRNA-1;Parent=Msa0372660;Name=Msa0372660-mRNA-1;_AED=0.05;_eAED=0.05;_QI=51|0.33|0.75|0.75|1|1|4|856|314
chr3_1 exon 71309937 71310999 71309937 ID=Msa0372660-mRNA-1:exon:15698;Parent=Msa0372660-mRNA-1
chr3_1 exon 71311114 71311300 71311114 ID=Msa0372660-mRNA-1:exon:15697;Parent=Msa0372660-mRNA-1
chr3_1 exon 71312320 71312365 71312320 ID=Msa0372660-mRNA-1:exon:15696;Parent=Msa0372660-mRNA-1
chr3_1 exon 71314882 71315437 71314882 ID=Msa0372660-mRNA-1:exon:15695;Parent=Msa0372660-mRNA-1
chr3_1 five_prime_UTR 71315387 71315437 71315387 ID=Msa0372660-mRNA-1:five_prime_utr;Parent=Msa0372660-mRNA-1
chr3_1 CDS 71314882 71315386 71314882 ID=Msa0372660-mRNA-1:cds;Parent=Msa0372660-mRNA-1
chr3_1 CDS 71312320 71312365 71312320 ID=Msa0372660-mRNA-1:cds;Parent=Msa0372660-mRNA-1
chr3_1 CDS 71311114 71311300 71311114 ID=Msa0372660-mRNA-1:cds;Parent=Msa0372660-mRNA-1
chr3_1 CDS 71310793 71310999 71310793 ID=Msa0372660-mRNA-1:cds;Parent=Msa0372660-mRNA-1
chr3_1 three_prime_UTR 71309937 71310792 71309937 ID=Msa0372660-mRNA-1:three_prime_utr;Parent=Msa0372660-mRNA-1
Gene Sequence

>Msa0372660

ATGCAAACCTTTCGAAGAATCACAACAACAGCAACAAAATCAAACCAATTCAAATCACTCTTCTCCACCATCAAACTCCCAACAACAATCCGTCAATTCTCATCTCGCAATCCTCGAAGCGGTGAAGACGAATGGAACGAAGCATGGGAATCAGCGTGGTTACCACAAGACCTAACACCAAAGACACGAGCACCATGGGAAGGAGACGTGAATTTCGCTTCGGAAGAAGTGGCGGACGCGGAGACGAAGGCGTTTGTTGAAGAGATGAATGAGAATTGGAATGAGAGGAGAAAAGGGTTGAAGAAGGAGAAGGTTGAGGAGGAGAATGTGAAAGGTGGGATTTATAGTTTGGAAAATATTAAGAAGGATTATAGGTTGAAGAAACAGAAGTTGCATGCTGGGCTTTGGAGTAAGGAGATTGAGAAACTTGAGGAGGCGAAATTGGGGGGTGTGGTGGTGGTGAAGGGGATGATGATATTCAGAAATTGCTTGATAGTTGTTCTGAAAATGTTCACTTTCACTTCAGAACACCTATCTGTATATATGATAAGTATTTTTGACTCCCACAATAATGATCTGAACAACGCAAAAGATCCAACTTCTGAATTCAAAAACATGCCTGATGGGTGGGAAACAATATCGAAAAATCAAGATGGAAATATATGGGAGATGTCCCAAAGAGAAGAAGATATACTTATGCAGGAATTCGAACGGAGAATTGCGTATAGCAAATTTCAGATTGCAAGTTTTATCAAGACACACATATTTAGCCGGAGGAGGCCAATTGATGGGTGGAAATACATGATTGAGGTGGTGGGACCAAATGCCAAGAGAGGGAAGGGCAGTGTTTCTAGAGTACCAAGTCTCTCTGATCCCTCTACCCAACCATTCAAAGAAGAGAAGACTTCAGTTGATAAGAGTTACATTCCCCTTGGTAGGAGATAG

Protein sequence

>Msa0372660

MQTFRRITTTATKSNQFKSLFSTIKLPTTIRQFSSRNPRSGEDEWNEAWESAWLPQDLTPKTRAPWEGDVNFASEEVADAETKAFVEEMNENWNERRKGLKKEKVEEENVKGGIYSLENIKKDYRLKKQKLHAGLWSKEIEKLEEAKLGGVVVVKGMMIFRNCLIVVLKMFTFTSEHLSVYMISIFDSHNNDLNNAKDPTSEFKNMPDGWETISKNQDGNIWEMSQREEDILMQEFERRIAYSKFQIASFIKTHIFSRRRPIDGWKYMIEVVGPNAKRGKGSVSRVPSLSDPSTQPFKEEKTSVDKSYIPLGRR*