AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0443880


Find 229 sgRNAs with CRISPR-Local

Find 1328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr3_3 gene 16059116 16078891 16059116 ID=Msa0443880;Name=Msa0443880
chr3_3 mRNA 16059116 16078891 16059116 ID=Msa0443880-mRNA-1;Parent=Msa0443880;Name=Msa0443880-mRNA-1;_AED=0.12;_eAED=0.12;_QI=141|0.82|0.83|1|0.82|0.8|30|477|966
chr3_3 exon 16059116 16059648 16059116 ID=Msa0443880-mRNA-1:exon:3408;Parent=Msa0443880-mRNA-1
chr3_3 exon 16060745 16060817 16060745 ID=Msa0443880-mRNA-1:exon:3407;Parent=Msa0443880-mRNA-1
chr3_3 exon 16060907 16060969 16060907 ID=Msa0443880-mRNA-1:exon:3406;Parent=Msa0443880-mRNA-1
chr3_3 exon 16064242 16064342 16064242 ID=Msa0443880-mRNA-1:exon:3405;Parent=Msa0443880-mRNA-1
chr3_3 exon 16064424 16064547 16064424 ID=Msa0443880-mRNA-1:exon:3404;Parent=Msa0443880-mRNA-1
chr3_3 exon 16065148 16065210 16065148 ID=Msa0443880-mRNA-1:exon:3403;Parent=Msa0443880-mRNA-1
chr3_3 exon 16065728 16065949 16065728 ID=Msa0443880-mRNA-1:exon:3402;Parent=Msa0443880-mRNA-1
chr3_3 exon 16066094 16066291 16066094 ID=Msa0443880-mRNA-1:exon:3401;Parent=Msa0443880-mRNA-1
chr3_3 exon 16066316 16066524 16066316 ID=Msa0443880-mRNA-1:exon:3400;Parent=Msa0443880-mRNA-1
chr3_3 exon 16066531 16066768 16066531 ID=Msa0443880-mRNA-1:exon:3399;Parent=Msa0443880-mRNA-1
chr3_3 exon 16067078 16067144 16067078 ID=Msa0443880-mRNA-1:exon:3398;Parent=Msa0443880-mRNA-1
chr3_3 exon 16067226 16067341 16067226 ID=Msa0443880-mRNA-1:exon:3397;Parent=Msa0443880-mRNA-1
chr3_3 exon 16067608 16067694 16067608 ID=Msa0443880-mRNA-1:exon:3396;Parent=Msa0443880-mRNA-1
chr3_3 exon 16068070 16068159 16068070 ID=Msa0443880-mRNA-1:exon:3395;Parent=Msa0443880-mRNA-1
chr3_3 exon 16068838 16068906 16068838 ID=Msa0443880-mRNA-1:exon:3394;Parent=Msa0443880-mRNA-1
chr3_3 exon 16068982 16069039 16068982 ID=Msa0443880-mRNA-1:exon:3393;Parent=Msa0443880-mRNA-1
chr3_3 exon 16069238 16069295 16069238 ID=Msa0443880-mRNA-1:exon:3392;Parent=Msa0443880-mRNA-1
chr3_3 exon 16069407 16069474 16069407 ID=Msa0443880-mRNA-1:exon:3391;Parent=Msa0443880-mRNA-1
chr3_3 exon 16069946 16070025 16069946 ID=Msa0443880-mRNA-1:exon:3390;Parent=Msa0443880-mRNA-1
chr3_3 exon 16070631 16070694 16070631 ID=Msa0443880-mRNA-1:exon:3389;Parent=Msa0443880-mRNA-1
chr3_3 exon 16071863 16071934 16071863 ID=Msa0443880-mRNA-1:exon:3388;Parent=Msa0443880-mRNA-1
chr3_3 exon 16072106 16072165 16072106 ID=Msa0443880-mRNA-1:exon:3387;Parent=Msa0443880-mRNA-1
chr3_3 exon 16072762 16072816 16072762 ID=Msa0443880-mRNA-1:exon:3386;Parent=Msa0443880-mRNA-1
chr3_3 exon 16072924 16072957 16072924 ID=Msa0443880-mRNA-1:exon:3385;Parent=Msa0443880-mRNA-1
chr3_3 exon 16073452 16073538 16073452 ID=Msa0443880-mRNA-1:exon:3384;Parent=Msa0443880-mRNA-1
chr3_3 exon 16073907 16073978 16073907 ID=Msa0443880-mRNA-1:exon:3383;Parent=Msa0443880-mRNA-1
chr3_3 exon 16074117 16074305 16074117 ID=Msa0443880-mRNA-1:exon:3382;Parent=Msa0443880-mRNA-1
chr3_3 exon 16074428 16074555 16074428 ID=Msa0443880-mRNA-1:exon:3381;Parent=Msa0443880-mRNA-1
chr3_3 exon 16074670 16074774 16074670 ID=Msa0443880-mRNA-1:exon:3380;Parent=Msa0443880-mRNA-1
chr3_3 exon 16078756 16078891 16078756 ID=Msa0443880-mRNA-1:exon:3379;Parent=Msa0443880-mRNA-1
chr3_3 five_prime_UTR 16078756 16078891 16078756 ID=Msa0443880-mRNA-1:five_prime_utr;Parent=Msa0443880-mRNA-1
chr3_3 five_prime_UTR 16074770 16074774 16074770 ID=Msa0443880-mRNA-1:five_prime_utr;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16074670 16074769 16074670 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16074428 16074555 16074428 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16074117 16074305 16074117 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16073907 16073978 16073907 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16073452 16073538 16073452 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16072924 16072957 16072924 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16072762 16072816 16072762 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16072106 16072165 16072106 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16071863 16071934 16071863 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16070631 16070694 16070631 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16069946 16070025 16069946 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16069407 16069474 16069407 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16069238 16069295 16069238 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16068982 16069039 16068982 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16068838 16068906 16068838 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16068070 16068159 16068070 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16067608 16067694 16067608 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16067226 16067341 16067226 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16067078 16067144 16067078 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16066531 16066768 16066531 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16066316 16066524 16066316 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16066094 16066291 16066094 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16065728 16065949 16065728 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16065148 16065210 16065148 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16064424 16064547 16064424 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16064242 16064342 16064242 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16060907 16060969 16060907 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16060745 16060817 16060745 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 CDS 16059593 16059648 16059593 ID=Msa0443880-mRNA-1:cds;Parent=Msa0443880-mRNA-1
chr3_3 three_prime_UTR 16059116 16059592 16059116 ID=Msa0443880-mRNA-1:three_prime_utr;Parent=Msa0443880-mRNA-1
Gene Sequence

>Msa0443880

ATGGCGAGCGATGACAATCTAAAGACATGGGTTTCAGATAAGTTGATGTCACTACTTGGATATTCCCAGCGCACAGTTGTACAGTACATGATTGGACTATCCAAGCAAGCTACTTCACCAGCTGATTTAGTGGGAAAGCTAGTGGAGTTTGGGATTTCAACAACAGACTCCCGTGCGTTTGCGGAAGAAATTTTCTCAAGAGTTCCTCGTAGATCGTCCGGCTTAAATCAATATCAAAAACAAGAGAGAGAAGCTGCAATGTTGGCAAGGAAGCAGGCGACTTACACAATTTTGAAGGATGACGACGACATCGACGATGACCATACTGTTGGTGGTGACGATAAATCGTCGATAACTACTGCTTCTACATCTAGAAAGCCAGACAATCATAAAAAACGTTTCAGGAAGAAAACTGAAGTAATTTCAAGGAAAGAAAGGGAAAGACAGGTTAAGAGAAGAACTTCCCCTGATGAAGAGAGTGGTTCAGAGTCAGAAGAAGAAAGATTGAAAGATCAAAGAGAAAGGGACGAATTAGTGCAGCATATGAGAGAAAGAGATGCTGCAGCAACAAGGAAGTTGACTGAACAAAAATTAACACGAAAGGAGGAAGAAGAAGCAATTCGAAGATCTAATGCTGCAGAGCAGGATGATTTGCGTTCTTTGAGAAAGTATTCACGGCAAGAATACTTGAAGAAAAGGGAGGAAAAGAAATTAGAAGAACTGAGAGATGATATTGAAGATGAACAATATCTATTTGATGGTGTGAAGCTTTCAGAAGTGGAACAGCGTGAGTTAAGGCACAAGAAAGAACTATATGAACTTATAAAAAAGCGGTCAGAGGAGGCAGACAATGTGAATGAGTATAGAATGCCAGACGCTTATGATCAAGAAGGTGGCGTTAATCAAGAAAAGAGATTTTCTGTGGCTATGCAGCGTTACAGGGATACAAATGCTGAGGAAAAGATGAATCCATTTGCTGAACAAGAGGCATGGGAGGAACATCAAATTGGAAAGGCAACACTGAAGTATGGCTCCAAAAATAAAAAACTAGCCTCTGATGATTACCAGTTTGTGTTCGAGGACCAAATTGATTTTATCAAGGCATCTGTGATGGATGGAGATAAGTTTGATAACGACGAGATGGCAGATTCAATTGAAAAGTCCAAAGCAAAGTCTGCAGCAGAGGCACTTCAGGTACTTGTAATTGTTGGTGAAACCGGTTCTGGAAAGACTACACAAATTCCTCAATATCTTCATGAAGCTGGCTACACAAAACATGGAATGATTGCATGTACTCAGCCACGTCGTGTTGCTGCTATGAGTGTGGCTGCTCGAGTTGCTCACGAATTAGATGTTAAACTAGGACACGAGGTTGGGTACTCCATCCGTTTTGAGGATTGCACATCAGACAAGACTATTCTGAAATATATGACAGATGGAATGTTACTGAGGGAATTTCTTGGTGAGCCTGATCTGGCAAGTTATAGTGTTGTGATGGTGGATGAGGCTCATGAAAGGACACTCTCAACTGATATCTTGTTTGCATTAGTGAAGGATATTTCTCGCTTCCGATCTGATCTTAAGTTGCTGATATCAAGTGCTACACTTGATGCAGAAAAGTTCAGTGATTACTTTGATTCTGCTCCAATATTCAAAATTCCAGGGAGAAGGTATCCAGTTGAAATACACTTTACCAAAGCACCAGAAGCTGACTACTTAGATGCAGCTATTGTAACAGCACTTCAAATCCATGTTACTCAAGCTCCTGGAGATATATTAATATTCCTTACTGAGGAAATTGAAACGGCTGAAGAAATCTTGAAGCATCGAACTAGAGGCTTAGGGACTAAAATTGCTGAATTAATTATATGTCCTATATATGCCAACCTACCAACGGAACTGCAAGCCAAAATATTTGAACCAACTCCTGAAGGGGCACGAAAGGTTGTCCTTGCTACCAATATCGCAGAAACATCATTGACAATTGATGGAATAAAGTATATGAAGAGTTATAATCCAAAGACAGGAATGGAGTCTTTACTAGTGTCTCCCATCTCAAAAGCCTCAGCTATGCAACGAGCTGGTCGATCTGGAAGAACAGGTCCTGGAAAGTGCTTCCGGTTGTATACTGCATACAATTTTCAAAATGATTTGGATGATAACACTGTACCCGAAATACAGAGGACTAACCTCACAAATGTAGGTAGACGGATGGCAGAGTTCCCACTTGATCCTATGTTGTCAAAAATGATAGTGGTTTCAGAAAAATACAAGTGTTCAGAAGACATAATTTCCATTGCTGCTATGCTTTCTATTGGAAATTCAATATTTTACCGTCCAAAGGATAAACAAGTACATGCAGACAATGCAAGGCTGAATTTTCACACTGGAAATGTTGGAGACCATATGGCGTTGCTCAAGGTCTACAATTCTTGGAAGGAGACCAATTATTCAACACAATGGTGTTATGAAAATTATATACAGGTAAGGAGCATGAAACGGGCGAGGGATATCCGTGATCAACTTGCAGGTCTATTAGAGAGGGTTGAGATTGAGCTTTCTACAAATCCTAATGATTTAGATGCCATCAAGAAATCTATAACATCTGGATTTTTCCCACACTCTGCAAAATTGCAAAAAAATGGATCGTATCGGACACTTAAACATGGGCAGACTGTTCACATACATCCTAGTTCAGGGCTGGCACAGGTTCTCCCAAAATGGGTTGTGTACCATGAACTAGTACTCACAACCAAGGAGTATATGAGACAGATCACGGAGTTAAAGGCAGAGTGGTTGTTGGAGATAGCCCCTCACTATTACCAGCTCAAGGATGTTGAAGACACTGGTTCCAAGAAAATGCCCCGTGGAGAAGGACGCGCAAGAATCACAGACAACTAG

Protein sequence

>Msa0443880

MASDDNLKTWVSDKLMSLLGYSQRTVVQYMIGLSKQATSPADLVGKLVEFGISTTDSRAFAEEIFSRVPRRSSGLNQYQKQEREAAMLARKQATYTILKDDDDIDDDHTVGGDDKSSITTASTSRKPDNHKKRFRKKTEVISRKERERQVKRRTSPDEESGSESEEERLKDQRERDELVQHMRERDAAATRKLTEQKLTRKEEEEAIRRSNAAEQDDLRSLRKYSRQEYLKKREEKKLEELRDDIEDEQYLFDGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTNAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKLASDDYQFVFEDQIDFIKASVMDGDKFDNDEMADSIEKSKAKSAAEALQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQPRRVAAMSVAARVAHELDVKLGHEVGYSIRFEDCTSDKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFALVKDISRFRSDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHFTKAPEADYLDAAIVTALQIHVTQAPGDILIFLTEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYMKSYNPKTGMESLLVSPISKASAMQRAGRSGRTGPGKCFRLYTAYNFQNDLDDNTVPEIQRTNLTNVGRRMAEFPLDPMLSKMIVVSEKYKCSEDIISIAAMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHMALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELSTNPNDLDAIKKSITSGFFPHSAKLQKNGSYRTLKHGQTVHIHPSSGLAQVLPKWVVYHELVLTTKEYMRQITELKAEWLLEIAPHYYQLKDVEDTGSKKMPRGEGRARITDN*