AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0760880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0760880 MtrunA17_Chr2g0282761 88.889 63 7 0 1 63 1 63 3.21e-33 117
Msa0760880 MtrunA17_Chr4g0040501 76.190 63 15 0 1 63 1 63 1.16e-27 102
Msa0760880 MtrunA17_Chr2g0282741 76.190 63 14 1 1 62 1 63 1.18e-26 99.8
Msa0760880 MtrunA17_Chr4g0006391 68.254 63 20 0 1 63 1 63 1.41e-26 99.4
Msa0760880 MtrunA17_Chr3g0138471 68.254 63 20 0 1 63 1 63 3.27e-25 95.5
Msa0760880 MtrunA17_Chr2g0324921 68.254 63 20 0 1 63 1 63 3.09e-24 93.2
Msa0760880 MtrunA17_Chr7g0263971 53.333 60 28 0 4 63 369 428 1.94e-16 72.4
Msa0760880 MtrunA17_Chr7g0269841 59.322 59 23 1 5 63 27 84 3.54e-16 71.2
Msa0760880 MtrunA17_Chr3g0123861 56.667 60 24 1 4 63 82 139 9.26e-14 64.7
Msa0760880 MtrunA17_Chr5g0415731 47.059 68 29 1 4 64 5 72 2.77e-13 61.2
Msa0760880 MtrunA17_Chr5g0427221 50.000 62 29 2 4 64 48 108 1.12e-12 59.3
Msa0760880 MtrunA17_Chr6g0478651 53.125 64 24 2 2 63 66 125 1.24e-12 61.6
Msa0760880 MtrunA17_Chr3g0087741 47.541 61 31 1 4 64 89 148 1.82e-12 61.2
Msa0760880 MtrunA17_Chr7g0271891 41.935 62 33 1 5 63 17 78 2.17e-12 59.3
Msa0760880 MtrunA17_Chr8g0334811 51.667 60 24 1 5 64 15 69 4.48e-12 60.1
Msa0760880 MtrunA17_Chr3g0093111 50.000 54 26 1 3 55 1 54 5.37e-12 59.7
Msa0760880 MtrunA17_Chr8g0344721 43.077 65 32 1 4 63 10 74 6.38e-12 58.9
Msa0760880 MtrunA17_Chr5g0426951 46.667 60 31 1 4 63 83 141 1.48e-11 58.5
Msa0760880 MtrunA17_Chr1g0209551 48.333 60 30 1 4 63 16 74 1.91e-11 58.2
Msa0760880 MtrunA17_Chr3g0091361 45.161 62 33 1 3 63 4 65 5.44e-11 56.2
Msa0760880 MtrunA17_Chr4g0021141 49.020 51 25 1 4 54 22 71 5.49e-11 54.7
Msa0760880 MtrunA17_Chr4g0010781 46.667 60 31 1 5 64 87 145 6.04e-11 57.0
Msa0760880 MtrunA17_Chr6g0460461 42.105 57 29 1 3 55 1 57 6.48e-11 55.8
Msa0760880 MtrunA17_Chr6g0460411 42.105 57 29 1 3 55 1 57 8.98e-11 55.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0760880 AT3G08910.1 69.841 63 19 0 1 63 1 63 1.55e-26 99.4
Msa0760880 AT5G01390.2 68.254 63 20 0 1 63 1 63 5.96e-26 97.1
Msa0760880 AT5G01390.1 68.254 63 20 0 1 63 1 63 7.05e-26 97.8
Msa0760880 AT5G01390.3 68.254 63 20 0 1 63 1 63 1.54e-25 95.1
Msa0760880 AT5G01390.4 68.254 63 20 0 1 63 1 63 1.74e-25 95.1
Msa0760880 AT5G25530.2 68.254 63 20 0 1 63 1 63 1.90e-25 97.1
Msa0760880 AT4G28480.2 68.254 63 20 0 1 63 1 63 3.26e-25 95.5
Msa0760880 AT2G20560.1 69.841 63 18 1 1 62 1 63 3.45e-25 96.3
Msa0760880 AT4G28480.1 68.254 63 20 0 1 63 1 63 6.85e-25 95.5
Msa0760880 AT5G25530.1 74.545 55 14 0 1 55 1 55 8.96e-25 95.1
Msa0760880 AT1G10350.1 56.250 64 28 0 1 64 1 64 1.94e-21 86.3
Msa0760880 AT1G59725.1 58.462 65 26 1 1 64 1 65 5.20e-20 82.0
Msa0760880 AT3G47940.1 60.000 65 25 1 1 64 1 65 8.62e-20 81.6
Msa0760880 AT2G41000.2 43.284 67 34 1 3 65 2 68 4.29e-14 64.7
Msa0760880 AT3G62600.1 52.381 63 29 1 2 64 24 85 4.35e-14 65.9
Msa0760880 AT2G41000.1 47.368 57 26 1 3 55 2 58 9.47e-14 63.5
Msa0760880 AT2G22360.1 56.667 60 24 1 4 63 86 143 1.60e-13 64.7
Msa0760880 AT4G39960.1 56.667 60 24 1 4 63 85 142 1.61e-13 64.7
Msa0760880 AT4G39960.2 56.667 60 24 1 4 63 85 142 1.61e-13 64.7
Msa0760880 AT3G17830.1 54.688 64 23 2 2 63 61 120 1.75e-13 64.7
Msa0760880 AT5G48030.1 52.459 61 28 1 4 64 94 153 2.45e-13 63.9
Msa0760880 AT5G03160.1 48.333 60 31 0 4 63 370 429 2.64e-13 63.9
Msa0760880 AT1G56300.2 44.444 63 32 1 5 64 14 76 1.38e-12 58.9
Msa0760880 AT1G56300.1 44.444 63 32 1 5 64 14 76 2.31e-12 59.3
Msa0760880 AT1G59980.2 49.153 59 28 2 6 63 25 82 2.44e-12 61.2
Msa0760880 AT1G59980.1 49.153 59 28 2 6 63 25 82 4.69e-12 60.5
Msa0760880 AT1G68370.1 50.000 62 30 1 4 65 17 77 7.63e-12 59.7
Msa0760880 AT5G16650.2 50.000 62 29 2 4 64 11 71 5.31e-11 55.8
Msa0760880 AT5G16650.1 54.902 51 22 1 4 54 11 60 6.47e-11 55.1
Msa0760880 AT1G28210.1 44.262 61 33 1 4 64 48 107 9.75e-11 56.6

Find 39 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGATTACTATGAGATTT+TGG 0.205034 5_2:+17520869 Msa0760880:CDS
TTATTGTCAGGATTCTTATC+AGG 0.253732 5_2:-17520960 None:intergenic
ACAGATTAAACCTTTATTCT+TGG 0.256184 5_2:-17520029 None:intergenic
GTAGATTTGCTGTGCGTAAT+TGG 0.280019 5_2:+17520056 Msa0760880:five_prime_UTR
CTTATCAGGGTGCCATTTCA+TGG 0.338061 5_2:-17520946 None:intergenic
GATTCCATGACCAAGAATAA+AGG 0.364161 5_2:+17520019 Msa0760880:five_prime_UTR
TTGAGTTGGCACTTTGTGAA+TGG 0.387729 5_2:+17521775 Msa0760880:CDS
ATAGAAAACTTGCCATGAAA+TGG 0.412382 5_2:+17520934 Msa0760880:CDS
TGGTTCTAGCCTGGTGGATA+AGG 0.413461 5_2:+17520186 Msa0760880:five_prime_UTR
CCATTCTCTCTCTTCTCCCA+AGG 0.424472 5_2:-17521739 None:intergenic
TAAACCTTTATTCTTGGTCA+TGG 0.433411 5_2:-17520023 None:intergenic
TGAGTTGGCACTTTGTGAAT+GGG 0.433526 5_2:+17521776 Msa0760880:CDS
TCAGCATCATTCTTATTGTC+AGG 0.435149 5_2:-17520972 None:intergenic
ACACTTGGCAGCCTATATAA+AGG 0.442591 5_2:-17521827 None:intergenic
GGAAATTGTGTTTGTTGAGT+TGG 0.451610 5_2:+17521761 Msa0760880:CDS
CCTTGGGAGAAGAGAGAGAA+TGG 0.452579 5_2:+17521739 Msa0760880:CDS
GAAAGCAAAGTAGTGGAAGA+TGG 0.462215 5_2:+17520845 Msa0760880:exon
TATTGTCAGGATTCTTATCA+GGG 0.462954 5_2:-17520959 None:intergenic
TACTGTGGCGGTGGCTGAGA+TGG 0.471767 5_2:+17521804 Msa0760880:CDS
TACATATACCTCATATGCTT+CGG 0.471997 5_2:-17521015 None:intergenic
AAAGTAGTGGAAGATGGGTT+TGG 0.472595 5_2:+17520851 Msa0760880:exon
ACTCATATCCGAAGCATATG+AGG 0.475266 5_2:+17521007 Msa0760880:CDS
GAAAAGTGAAAGCAAAGTAG+TGG 0.495138 5_2:+17520838 Msa0760880:five_prime_UTR
GGCTGAGATGGCCTTTATAT+AGG 0.502710 5_2:+17521816 Msa0760880:CDS
AAAGCAAAGTAGTGGAAGAT+GGG 0.505371 5_2:+17520846 Msa0760880:exon
GGTGGATAAGGCAAACATAC+AGG 0.505654 5_2:+17520198 Msa0760880:five_prime_UTR
TGGGGTTGTTACTGTGGCGG+TGG 0.539860 5_2:+17521795 Msa0760880:CDS
GATTTGCTGTGCGTAATTGG+AGG 0.540099 5_2:+17520059 Msa0760880:five_prime_UTR
CTTGGGAGAAGAGAGAGAAT+GGG 0.558864 5_2:+17521740 Msa0760880:CDS
GTATGTTTGCCTTATCCACC+AGG 0.559232 5_2:-17520195 None:intergenic
AAAGAAAGTCCTATCTTGAG+TGG 0.579591 5_2:+17520811 Msa0760880:five_prime_UTR
TATCCACCAGGCTAGAACCA+TGG 0.582402 5_2:-17520183 None:intergenic
AATGTGTGGACTTTCTCTGA+TGG 0.591588 5_2:+17519991 Msa0760880:five_prime_UTR
TTTCCATGGTTCTAGCCTGG+TGG 0.591889 5_2:+17520180 Msa0760880:five_prime_UTR
GAATGGGGTTGTTACTGTGG+CGG 0.610691 5_2:+17521792 Msa0760880:CDS
GAGTTGGCACTTTGTGAATG+GGG 0.615760 5_2:+17521777 Msa0760880:CDS
TGTGAATGGGGTTGTTACTG+TGG 0.618252 5_2:+17521789 Msa0760880:CDS
AGAGTGTCTACAAACAGAGC+AGG 0.623091 5_2:-17520098 None:intergenic
GACTGAAATGTATTAATGTG+TGG 0.658305 5_2:+17519977 Msa0760880:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTGATTACTATTTATA+TGG + chr5_2:17520382-17520401 Msa0760880:intron 15.0%
!! AATAATAGATAAAATATCTG+AGG - chr5_2:17520415-17520434 None:intergenic 15.0%
!!! TTTTCTGATTACTATTTATA+TGG + chr5_2:17520382-17520401 Msa0760880:intron 15.0%
!! AATAATAGATAAAATATCTG+AGG - chr5_2:17520415-17520434 None:intergenic 15.0%
!! TGCAAAATTAACATTTAAGT+TGG + chr5_2:17520350-17520369 Msa0760880:intron 20.0%
!! TCTATTATTGTGTTCTTTAA+CGG + chr5_2:17520426-17520445 Msa0760880:intron 20.0%
!!! ATTTTCACTATACTTTAACA+AGG + chr5_2:17520452-17520471 Msa0760880:intron 20.0%
!! TTTATCTGTTACAACAAAAT+TGG + chr5_2:17520489-17520508 Msa0760880:intron 20.0%
!! ATTATTATTGAACAAGACTA+TGG - chr5_2:17520752-17520771 None:intergenic 20.0%
!! TGCAAAATTAACATTTAAGT+TGG + chr5_2:17520350-17520369 Msa0760880:intron 20.0%
!! TCTATTATTGTGTTCTTTAA+CGG + chr5_2:17520426-17520445 Msa0760880:intron 20.0%
!!! ATTTTCACTATACTTTAACA+AGG + chr5_2:17520452-17520471 Msa0760880:intron 20.0%
!! TTTATCTGTTACAACAAAAT+TGG + chr5_2:17520489-17520508 Msa0760880:intron 20.0%
!! ATTATTATTGAACAAGACTA+TGG - chr5_2:17520752-17520771 None:intergenic 20.0%
! ACAGATTAAACCTTTATTCT+TGG - chr5_2:17520032-17520051 None:intergenic 25.0%
! AATAACCATCATCATGTAAT+GGG - chr5_2:17520252-17520271 None:intergenic 25.0%
! AAATAACCATCATCATGTAA+TGG - chr5_2:17520253-17520272 None:intergenic 25.0%
! AATGTGGTATACTTAAAGTT+TGG - chr5_2:17520320-17520339 None:intergenic 25.0%
!! TAATGCTGAAATTTTCTGTT+GGG + chr5_2:17520618-17520637 Msa0760880:intron 25.0%
!! TTTGGATTACTATGAGATTT+TGG + chr5_2:17520869-17520888 Msa0760880:CDS 25.0%
! GTTTAATTGCTACAAAACTA+TGG + chr5_2:17521060-17521079 Msa0760880:intron 25.0%
! TTATTACCTGAACTTTGAAT+TGG + chr5_2:17521392-17521411 Msa0760880:intron 25.0%
! GTGATGAATTTACTTCAATT+TGG + chr5_2:17521632-17521651 Msa0760880:intron 25.0%
!!! ATTTGGCTTAATTTTGATTC+TGG + chr5_2:17521649-17521668 Msa0760880:intron 25.0%
!!! ATTTTGATTCTGGTAAAGTT+AGG + chr5_2:17521659-17521678 Msa0760880:intron 25.0%
!!! TTTTGATTCTGGTAAAGTTA+GGG + chr5_2:17521660-17521679 Msa0760880:intron 25.0%
! ACAGATTAAACCTTTATTCT+TGG - chr5_2:17520032-17520051 None:intergenic 25.0%
! AATAACCATCATCATGTAAT+GGG - chr5_2:17520252-17520271 None:intergenic 25.0%
! AAATAACCATCATCATGTAA+TGG - chr5_2:17520253-17520272 None:intergenic 25.0%
! AATGTGGTATACTTAAAGTT+TGG - chr5_2:17520320-17520339 None:intergenic 25.0%
!! TAATGCTGAAATTTTCTGTT+GGG + chr5_2:17520618-17520637 Msa0760880:intron 25.0%
!! TTTGGATTACTATGAGATTT+TGG + chr5_2:17520869-17520888 Msa0760880:CDS 25.0%
! GTTTAATTGCTACAAAACTA+TGG + chr5_2:17521060-17521079 Msa0760880:intron 25.0%
! TTATTACCTGAACTTTGAAT+TGG + chr5_2:17521392-17521411 Msa0760880:intron 25.0%
! GTGATGAATTTACTTCAATT+TGG + chr5_2:17521632-17521651 Msa0760880:intron 25.0%
!!! ATTTGGCTTAATTTTGATTC+TGG + chr5_2:17521649-17521668 Msa0760880:intron 25.0%
!!! ATTTTGATTCTGGTAAAGTT+AGG + chr5_2:17521659-17521678 Msa0760880:intron 25.0%
!!! TTTTGATTCTGGTAAAGTTA+GGG + chr5_2:17521660-17521679 Msa0760880:intron 25.0%
GACTGAAATGTATTAATGTG+TGG + chr5_2:17519977-17519996 Msa0760880:five_prime_UTR 30.0%
TAAACCTTTATTCTTGGTCA+TGG - chr5_2:17520026-17520045 None:intergenic 30.0%
TTACAGTTTCAAAAAAGGTC+GGG - chr5_2:17520133-17520152 None:intergenic 30.0%
GTTACAGTTTCAAAAAAGGT+CGG - chr5_2:17520134-17520153 None:intergenic 30.0%
CATCGTTACAGTTTCAAAAA+AGG - chr5_2:17520138-17520157 None:intergenic 30.0%
! TGTTGCAAAAAGATTTTCCA+TGG + chr5_2:17520166-17520185 Msa0760880:five_prime_UTR 30.0%
! AATGGGTTTGATCAAAACAA+AGG - chr5_2:17520235-17520254 None:intergenic 30.0%
TTAAAGTTTGGCCTAATTAC+TGG - chr5_2:17520308-17520327 None:intergenic 30.0%
TTTGCACTATGAAAAGAATG+TGG - chr5_2:17520336-17520355 None:intergenic 30.0%
TTCAAAATTCCTGCTAGATA+GGG + chr5_2:17520517-17520536 Msa0760880:intron 30.0%
! CTAATGCTGAAATTTTCTGT+TGG + chr5_2:17520617-17520636 Msa0760880:intron 30.0%
! AATGCTGAAATTTTCTGTTG+GGG + chr5_2:17520619-17520638 Msa0760880:intron 30.0%
!!! AGGTTTTTTTGTCTTGTTTC+TGG - chr5_2:17520786-17520805 None:intergenic 30.0%
ATAGAAAACTTGCCATGAAA+TGG + chr5_2:17520934-17520953 Msa0760880:CDS 30.0%
TATTGTCAGGATTCTTATCA+GGG - chr5_2:17520962-17520981 None:intergenic 30.0%
TTATTGTCAGGATTCTTATC+AGG - chr5_2:17520963-17520982 None:intergenic 30.0%
TACATATACCTCATATGCTT+CGG - chr5_2:17521018-17521037 None:intergenic 30.0%
AGTTTGGACCGAAAATAAAT+CGG + chr5_2:17521451-17521470 Msa0760880:intron 30.0%
!!! GAAGAACACCGATTTATTTT+CGG - chr5_2:17521462-17521481 None:intergenic 30.0%
TAAGAGAAGTGATAAGAAGA+GGG - chr5_2:17521523-17521542 None:intergenic 30.0%
ACTGTGATCATATGAATTCT+TGG + chr5_2:17521542-17521561 Msa0760880:intron 30.0%
TGCTTGAATTGCAATTTCTA+AGG + chr5_2:17521571-17521590 Msa0760880:intron 30.0%
GACTGAAATGTATTAATGTG+TGG + chr5_2:17519977-17519996 Msa0760880:five_prime_UTR 30.0%
TAAACCTTTATTCTTGGTCA+TGG - chr5_2:17520026-17520045 None:intergenic 30.0%
TTACAGTTTCAAAAAAGGTC+GGG - chr5_2:17520133-17520152 None:intergenic 30.0%
GTTACAGTTTCAAAAAAGGT+CGG - chr5_2:17520134-17520153 None:intergenic 30.0%
CATCGTTACAGTTTCAAAAA+AGG - chr5_2:17520138-17520157 None:intergenic 30.0%
! TGTTGCAAAAAGATTTTCCA+TGG + chr5_2:17520166-17520185 Msa0760880:five_prime_UTR 30.0%
! AATGGGTTTGATCAAAACAA+AGG - chr5_2:17520235-17520254 None:intergenic 30.0%
TTAAAGTTTGGCCTAATTAC+TGG - chr5_2:17520308-17520327 None:intergenic 30.0%
TTTGCACTATGAAAAGAATG+TGG - chr5_2:17520336-17520355 None:intergenic 30.0%
TTCAAAATTCCTGCTAGATA+GGG + chr5_2:17520517-17520536 Msa0760880:intron 30.0%
! CTAATGCTGAAATTTTCTGT+TGG + chr5_2:17520617-17520636 Msa0760880:intron 30.0%
! AATGCTGAAATTTTCTGTTG+GGG + chr5_2:17520619-17520638 Msa0760880:intron 30.0%
!!! AGGTTTTTTTGTCTTGTTTC+TGG - chr5_2:17520786-17520805 None:intergenic 30.0%
ATAGAAAACTTGCCATGAAA+TGG + chr5_2:17520934-17520953 Msa0760880:CDS 30.0%
TATTGTCAGGATTCTTATCA+GGG - chr5_2:17520962-17520981 None:intergenic 30.0%
TTATTGTCAGGATTCTTATC+AGG - chr5_2:17520963-17520982 None:intergenic 30.0%
TACATATACCTCATATGCTT+CGG - chr5_2:17521018-17521037 None:intergenic 30.0%
AGTTTGGACCGAAAATAAAT+CGG + chr5_2:17521451-17521470 Msa0760880:intron 30.0%
!!! GAAGAACACCGATTTATTTT+CGG - chr5_2:17521462-17521481 None:intergenic 30.0%
TAAGAGAAGTGATAAGAAGA+GGG - chr5_2:17521523-17521542 None:intergenic 30.0%
ACTGTGATCATATGAATTCT+TGG + chr5_2:17521542-17521561 Msa0760880:intron 30.0%
TGCTTGAATTGCAATTTCTA+AGG + chr5_2:17521571-17521590 Msa0760880:intron 30.0%
GATTCCATGACCAAGAATAA+AGG + chr5_2:17520019-17520038 Msa0760880:five_prime_UTR 35.0%
TCAAACCCATTACATGATGA+TGG + chr5_2:17520244-17520263 Msa0760880:intron 35.0%
! CTGACAAGGTTTCTAGAAAA+TGG - chr5_2:17520283-17520302 None:intergenic 35.0%
CTGTTACAACAAAATTGGAG+AGG + chr5_2:17520494-17520513 Msa0760880:intron 35.0%
GTTCAAAATTCCTGCTAGAT+AGG + chr5_2:17520516-17520535 Msa0760880:intron 35.0%
ACATATTTACCCTATCTAGC+AGG - chr5_2:17520529-17520548 None:intergenic 35.0%
GTTGATCAGAAACTTCACTT+TGG - chr5_2:17520715-17520734 None:intergenic 35.0%
! GATAGGACTTTCTTTTCTTC+AGG - chr5_2:17520806-17520825 None:intergenic 35.0%
AAAGAAAGTCCTATCTTGAG+TGG + chr5_2:17520811-17520830 Msa0760880:five_prime_UTR 35.0%
! TTTTCTCTTCCACTCAAGAT+AGG - chr5_2:17520823-17520842 None:intergenic 35.0%
GAAAAGTGAAAGCAAAGTAG+TGG + chr5_2:17520838-17520857 Msa0760880:five_prime_UTR 35.0%
! AAAGCAAAGTAGTGGAAGAT+GGG + chr5_2:17520846-17520865 Msa0760880:exon 35.0%
! GGATTACTATGAGATTTTGG+AGG + chr5_2:17520872-17520891 Msa0760880:CDS 35.0%
TCAGCATCATTCTTATTGTC+AGG - chr5_2:17520975-17520994 None:intergenic 35.0%
! ACTGATCATTCATGTTTCTG+AGG + chr5_2:17521086-17521105 Msa0760880:intron 35.0%
! TCTTTGAAAGAACAAGTCTG+AGG + chr5_2:17521285-17521304 Msa0760880:intron 35.0%
GGTTCACAGCTACAAATAAA+CGG - chr5_2:17521334-17521353 None:intergenic 35.0%
TCATTGCAAAAACTCATCGA+AGG - chr5_2:17521355-17521374 None:intergenic 35.0%
GAATCTCCAATTCAAAGTTC+AGG - chr5_2:17521401-17521420 None:intergenic 35.0%
AAAAGATCCTTGAAAGCTTC+TGG + chr5_2:17521426-17521445 Msa0760880:intron 35.0%
AAACTTACCAGAAGCTTTCA+AGG - chr5_2:17521436-17521455 None:intergenic 35.0%
TTGAAAGCTTCTGGTAAGTT+TGG + chr5_2:17521435-17521454 Msa0760880:intron 35.0%
GTAAGAGAAGTGATAAGAAG+AGG - chr5_2:17521524-17521543 None:intergenic 35.0%
!! ACTGTTAGGATTTTGATCCT+TGG + chr5_2:17521722-17521741 Msa0760880:intron 35.0%
!! CTGTTAGGATTTTGATCCTT+GGG + chr5_2:17521723-17521742 Msa0760880:intron 35.0%
! GGAAATTGTGTTTGTTGAGT+TGG + chr5_2:17521761-17521780 Msa0760880:CDS 35.0%
GATTCCATGACCAAGAATAA+AGG + chr5_2:17520019-17520038 Msa0760880:five_prime_UTR 35.0%
TCAAACCCATTACATGATGA+TGG + chr5_2:17520244-17520263 Msa0760880:intron 35.0%
! CTGACAAGGTTTCTAGAAAA+TGG - chr5_2:17520283-17520302 None:intergenic 35.0%
CTGTTACAACAAAATTGGAG+AGG + chr5_2:17520494-17520513 Msa0760880:intron 35.0%
GTTCAAAATTCCTGCTAGAT+AGG + chr5_2:17520516-17520535 Msa0760880:intron 35.0%
ACATATTTACCCTATCTAGC+AGG - chr5_2:17520529-17520548 None:intergenic 35.0%
GTTGATCAGAAACTTCACTT+TGG - chr5_2:17520715-17520734 None:intergenic 35.0%
! GATAGGACTTTCTTTTCTTC+AGG - chr5_2:17520806-17520825 None:intergenic 35.0%
AAAGAAAGTCCTATCTTGAG+TGG + chr5_2:17520811-17520830 Msa0760880:five_prime_UTR 35.0%
! TTTTCTCTTCCACTCAAGAT+AGG - chr5_2:17520823-17520842 None:intergenic 35.0%
GAAAAGTGAAAGCAAAGTAG+TGG + chr5_2:17520838-17520857 Msa0760880:five_prime_UTR 35.0%
! AAAGCAAAGTAGTGGAAGAT+GGG + chr5_2:17520846-17520865 Msa0760880:exon 35.0%
! GGATTACTATGAGATTTTGG+AGG + chr5_2:17520872-17520891 Msa0760880:CDS 35.0%
TCAGCATCATTCTTATTGTC+AGG - chr5_2:17520975-17520994 None:intergenic 35.0%
! ACTGATCATTCATGTTTCTG+AGG + chr5_2:17521086-17521105 Msa0760880:intron 35.0%
! TCTTTGAAAGAACAAGTCTG+AGG + chr5_2:17521285-17521304 Msa0760880:intron 35.0%
GGTTCACAGCTACAAATAAA+CGG - chr5_2:17521334-17521353 None:intergenic 35.0%
TCATTGCAAAAACTCATCGA+AGG - chr5_2:17521355-17521374 None:intergenic 35.0%
GAATCTCCAATTCAAAGTTC+AGG - chr5_2:17521401-17521420 None:intergenic 35.0%
AAAAGATCCTTGAAAGCTTC+TGG + chr5_2:17521426-17521445 Msa0760880:intron 35.0%
AAACTTACCAGAAGCTTTCA+AGG - chr5_2:17521436-17521455 None:intergenic 35.0%
TTGAAAGCTTCTGGTAAGTT+TGG + chr5_2:17521435-17521454 Msa0760880:intron 35.0%
GTAAGAGAAGTGATAAGAAG+AGG - chr5_2:17521524-17521543 None:intergenic 35.0%
!! ACTGTTAGGATTTTGATCCT+TGG + chr5_2:17521722-17521741 Msa0760880:intron 35.0%
!! CTGTTAGGATTTTGATCCTT+GGG + chr5_2:17521723-17521742 Msa0760880:intron 35.0%
! GGAAATTGTGTTTGTTGAGT+TGG + chr5_2:17521761-17521780 Msa0760880:CDS 35.0%
AATGTGTGGACTTTCTCTGA+TGG + chr5_2:17519991-17520010 Msa0760880:five_prime_UTR 40.0%
!! GTAGATTTGCTGTGCGTAAT+TGG + chr5_2:17520056-17520075 Msa0760880:five_prime_UTR 40.0%
CCTAATTACTGGAACTGACA+AGG - chr5_2:17520297-17520316 None:intergenic 40.0%
CCTTGTCAGTTCCAGTAATT+AGG + chr5_2:17520294-17520313 Msa0760880:intron 40.0%
! TTTTGACACACCATGTCTGT+CGG + chr5_2:17520574-17520593 Msa0760880:intron 40.0%
! GAAAGCAAAGTAGTGGAAGA+TGG + chr5_2:17520845-17520864 Msa0760880:exon 40.0%
! AAAGTAGTGGAAGATGGGTT+TGG + chr5_2:17520851-17520870 Msa0760880:exon 40.0%
ACTCATATCCGAAGCATATG+AGG + chr5_2:17521007-17521026 Msa0760880:CDS 40.0%
CTTCTCTCTTTCTTCTTCAC+TGG + chr5_2:17521478-17521497 Msa0760880:intron 40.0%
! GTTCGATGATGATGATTCAG+TGG + chr5_2:17521593-17521612 Msa0760880:intron 40.0%
GTGAATGTTCTTCGTGTTCT+TGG + chr5_2:17521687-17521706 Msa0760880:intron 40.0%
TTCGTGTTCTTGGCAATTTC+TGG + chr5_2:17521697-17521716 Msa0760880:intron 40.0%
! GGCAATTTCTGGAAACTGTT+AGG + chr5_2:17521708-17521727 Msa0760880:intron 40.0%
!! TTGAGTTGGCACTTTGTGAA+TGG + chr5_2:17521775-17521794 Msa0760880:CDS 40.0%
! TGAGTTGGCACTTTGTGAAT+GGG + chr5_2:17521776-17521795 Msa0760880:CDS 40.0%
AATGTGTGGACTTTCTCTGA+TGG + chr5_2:17519991-17520010 Msa0760880:five_prime_UTR 40.0%
!! GTAGATTTGCTGTGCGTAAT+TGG + chr5_2:17520056-17520075 Msa0760880:five_prime_UTR 40.0%
CCTAATTACTGGAACTGACA+AGG - chr5_2:17520297-17520316 None:intergenic 40.0%
CCTTGTCAGTTCCAGTAATT+AGG + chr5_2:17520294-17520313 Msa0760880:intron 40.0%
! TTTTGACACACCATGTCTGT+CGG + chr5_2:17520574-17520593 Msa0760880:intron 40.0%
! GAAAGCAAAGTAGTGGAAGA+TGG + chr5_2:17520845-17520864 Msa0760880:exon 40.0%
! AAAGTAGTGGAAGATGGGTT+TGG + chr5_2:17520851-17520870 Msa0760880:exon 40.0%
ACTCATATCCGAAGCATATG+AGG + chr5_2:17521007-17521026 Msa0760880:CDS 40.0%
CTTCTCTCTTTCTTCTTCAC+TGG + chr5_2:17521478-17521497 Msa0760880:intron 40.0%
! GTTCGATGATGATGATTCAG+TGG + chr5_2:17521593-17521612 Msa0760880:intron 40.0%
GTGAATGTTCTTCGTGTTCT+TGG + chr5_2:17521687-17521706 Msa0760880:intron 40.0%
TTCGTGTTCTTGGCAATTTC+TGG + chr5_2:17521697-17521716 Msa0760880:intron 40.0%
! GGCAATTTCTGGAAACTGTT+AGG + chr5_2:17521708-17521727 Msa0760880:intron 40.0%
!! TTGAGTTGGCACTTTGTGAA+TGG + chr5_2:17521775-17521794 Msa0760880:CDS 40.0%
! TGAGTTGGCACTTTGTGAAT+GGG + chr5_2:17521776-17521795 Msa0760880:CDS 40.0%
!! GATTTGCTGTGCGTAATTGG+AGG + chr5_2:17520059-17520078 Msa0760880:five_prime_UTR 45.0%
! AGAGTGTCTACAAACAGAGC+AGG - chr5_2:17520101-17520120 None:intergenic 45.0%
!!! GATTTTCCATGGTTCTAGCC+TGG + chr5_2:17520177-17520196 Msa0760880:five_prime_UTR 45.0%
GTATGTTTGCCTTATCCACC+AGG - chr5_2:17520198-17520217 None:intergenic 45.0%
GGTGGATAAGGCAAACATAC+AGG + chr5_2:17520198-17520217 Msa0760880:five_prime_UTR 45.0%
!! CTTATCAGGGTGCCATTTCA+TGG - chr5_2:17520949-17520968 None:intergenic 45.0%
CTTGGGAGAAGAGAGAGAAT+GGG + chr5_2:17521740-17521759 Msa0760880:CDS 45.0%
GAGTTGGCACTTTGTGAATG+GGG + chr5_2:17521777-17521796 Msa0760880:CDS 45.0%
TGTGAATGGGGTTGTTACTG+TGG + chr5_2:17521789-17521808 Msa0760880:CDS 45.0%
GGCTGAGATGGCCTTTATAT+AGG + chr5_2:17521816-17521835 Msa0760880:CDS 45.0%
!! GATTTGCTGTGCGTAATTGG+AGG + chr5_2:17520059-17520078 Msa0760880:five_prime_UTR 45.0%
! AGAGTGTCTACAAACAGAGC+AGG - chr5_2:17520101-17520120 None:intergenic 45.0%
!!! GATTTTCCATGGTTCTAGCC+TGG + chr5_2:17520177-17520196 Msa0760880:five_prime_UTR 45.0%
GTATGTTTGCCTTATCCACC+AGG - chr5_2:17520198-17520217 None:intergenic 45.0%
GGTGGATAAGGCAAACATAC+AGG + chr5_2:17520198-17520217 Msa0760880:five_prime_UTR 45.0%
!! CTTATCAGGGTGCCATTTCA+TGG - chr5_2:17520949-17520968 None:intergenic 45.0%
CTTGGGAGAAGAGAGAGAAT+GGG + chr5_2:17521740-17521759 Msa0760880:CDS 45.0%
GAGTTGGCACTTTGTGAATG+GGG + chr5_2:17521777-17521796 Msa0760880:CDS 45.0%
TGTGAATGGGGTTGTTACTG+TGG + chr5_2:17521789-17521808 Msa0760880:CDS 45.0%
!! TTTCCATGGTTCTAGCCTGG+TGG + chr5_2:17520180-17520199 Msa0760880:five_prime_UTR 50.0%
TATCCACCAGGCTAGAACCA+TGG - chr5_2:17520186-17520205 None:intergenic 50.0%
!! TGGTTCTAGCCTGGTGGATA+AGG + chr5_2:17520186-17520205 Msa0760880:five_prime_UTR 50.0%
! ACCATGTCTGTCGGTGTTTG+TGG + chr5_2:17520583-17520602 Msa0760880:intron 50.0%
TCCACAAACACCGACAGACA+TGG - chr5_2:17520587-17520606 None:intergenic 50.0%
CCATTCTCTCTCTTCTCCCA+AGG - chr5_2:17521742-17521761 None:intergenic 50.0%
CCTTGGGAGAAGAGAGAGAA+TGG + chr5_2:17521739-17521758 Msa0760880:CDS 50.0%
GAATGGGGTTGTTACTGTGG+CGG + chr5_2:17521792-17521811 Msa0760880:CDS 50.0%
!! TTTCCATGGTTCTAGCCTGG+TGG + chr5_2:17520180-17520199 Msa0760880:five_prime_UTR 50.0%
TATCCACCAGGCTAGAACCA+TGG - chr5_2:17520186-17520205 None:intergenic 50.0%
!! TGGTTCTAGCCTGGTGGATA+AGG + chr5_2:17520186-17520205 Msa0760880:five_prime_UTR 50.0%
! ACCATGTCTGTCGGTGTTTG+TGG + chr5_2:17520583-17520602 Msa0760880:intron 50.0%
TCCACAAACACCGACAGACA+TGG - chr5_2:17520587-17520606 None:intergenic 50.0%
CCATTCTCTCTCTTCTCCCA+AGG - chr5_2:17521742-17521761 None:intergenic 50.0%
CCTTGGGAGAAGAGAGAGAA+TGG + chr5_2:17521739-17521758 Msa0760880:CDS 50.0%
GAATGGGGTTGTTACTGTGG+CGG + chr5_2:17521792-17521811 Msa0760880:CDS 50.0%
TGGGGTTGTTACTGTGGCGG+TGG + chr5_2:17521795-17521814 Msa0760880:CDS 60.0%
TACTGTGGCGGTGGCTGAGA+TGG + chr5_2:17521804-17521823 Msa0760880:CDS 60.0%
TGGGGTTGTTACTGTGGCGG+TGG + chr5_2:17521795-17521814 Msa0760880:CDS 60.0%
TACTGTGGCGGTGGCTGAGA+TGG + chr5_2:17521804-17521823 Msa0760880:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 17519942 17521837 17519942 ID=Msa0760880;Name=Msa0760880
chr5_2 mRNA 17519942 17521837 17519942 ID=Msa0760880-mRNA-1;Parent=Msa0760880;Name=Msa0760880-mRNA-1;_AED=0.25;_eAED=0.25;_QI=355|0.5|0.33|0.66|0.5|0.33|3|0|90
chr5_2 exon 17519942 17520219 17519942 ID=Msa0760880-mRNA-1:exon:7761;Parent=Msa0760880-mRNA-1
chr5_2 exon 17520787 17521028 17520787 ID=Msa0760880-mRNA-1:exon:7762;Parent=Msa0760880-mRNA-1
chr5_2 exon 17521730 17521837 17521730 ID=Msa0760880-mRNA-1:exon:7763;Parent=Msa0760880-mRNA-1
chr5_2 five_prime_UTR 17519942 17520219 17519942 ID=Msa0760880-mRNA-1:five_prime_utr;Parent=Msa0760880-mRNA-1
chr5_2 five_prime_UTR 17520787 17520863 17520787 ID=Msa0760880-mRNA-1:five_prime_utr;Parent=Msa0760880-mRNA-1
chr5_2 CDS 17520864 17521028 17520864 ID=Msa0760880-mRNA-1:cds;Parent=Msa0760880-mRNA-1
chr5_2 CDS 17521730 17521837 17521730 ID=Msa0760880-mRNA-1:cds;Parent=Msa0760880-mRNA-1
Gene Sequence

>Msa0760880

ATGGGTTTGGATTACTATGAGATTTTGGAGGTTGACAAGAATGCTACAGATGATGAGTTGAAGAATGCATATAGAAAACTTGCCATGAAATGGCACCCTGATAAGAATCCTGACAATAAGAATGATGCTGAGACTAAATTCAAACTCATATCCGAAGCATATGAGGATTTTGATCCTTGGGAGAAGAGAGAGAATGGGAAATTGTGTTTGTTGAGTTGGCACTTTGTGAATGGGGTTGTTACTGTGGCGGTGGCTGAGATGGCCTTTATATAG

Protein sequence

>Msa0760880

MGLDYYEILEVDKNATDDELKNAYRKLAMKWHPDKNPDNKNDAETKFKLISEAYEDFDPWEKRENGKLCLLSWHFVNGVVTVAVAEMAFI*