Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0760880 | sp|A9IGC5|DNAJ_BORPD | 73.333 | 60 | 15 | 1 | 4 | 63 | 5 | 63 | 8.96e-22 | 90.1 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0760880 | A2Q503 | 88.889 | 63 | 7 | 0 | 1 | 63 | 1 | 63 | 1.67e-29 | 117 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004920 | Msa0760880 | 0.807330 | 5.328744e-50 | -8.615850e-47 |
Msa0020930 | Msa0760880 | 0.800271 | 1.558273e-48 | -8.615850e-47 |
Msa0026150 | Msa0760880 | 0.815461 | 9.134796e-52 | -8.615850e-47 |
Msa0031180 | Msa0760880 | 0.801363 | 9.326573e-49 | -8.615850e-47 |
Msa0031820 | Msa0760880 | 0.814603 | 1.416377e-51 | -8.615850e-47 |
Msa0037160 | Msa0760880 | 0.802873 | 4.562966e-49 | -8.615850e-47 |
Msa0040450 | Msa0760880 | 0.811558 | 6.591565e-51 | -8.615850e-47 |
Msa0047050 | Msa0760880 | 0.801355 | 9.361267e-49 | -8.615850e-47 |
Msa0057710 | Msa0760880 | 0.804223 | 2.395026e-49 | -8.615850e-47 |
Msa0068680 | Msa0760880 | 0.802986 | 4.324910e-49 | -8.615850e-47 |
Msa0079400 | Msa0760880 | 0.804604 | 1.994926e-49 | -8.615850e-47 |
Msa0084080 | Msa0760880 | 0.807525 | 4.843874e-50 | -8.615850e-47 |
Msa0617580 | Msa0760880 | 0.823875 | 1.094522e-53 | -8.615850e-47 |
Msa0677080 | Msa0760880 | 0.801938 | 7.108987e-49 | -8.615850e-47 |
Msa0693380 | Msa0760880 | 0.817619 | 3.001238e-52 | -8.615850e-47 |
Msa0724830 | Msa0760880 | 0.801171 | 1.020980e-48 | -8.615850e-47 |
Msa0726860 | Msa0760880 | 0.804056 | 2.594135e-49 | -8.615850e-47 |
Msa0734960 | Msa0760880 | 0.815719 | 8.004410e-52 | -8.615850e-47 |
Msa0737560 | Msa0760880 | 0.802559 | 5.296420e-49 | -8.615850e-47 |
Msa0737570 | Msa0760880 | 0.811045 | 8.519096e-51 | -8.615850e-47 |
Msa0750430 | Msa0760880 | 0.803999 | 2.666140e-49 | -8.615850e-47 |
Msa0756530 | Msa0760880 | 0.805750 | 1.148347e-49 | -8.615850e-47 |
Msa0760880 | Msa0763150 | 0.968543 | 7.940735e-129 | -8.615850e-47 |
Msa0760880 | Msa0788710 | 0.801814 | 7.540770e-49 | -8.615850e-47 |
Msa0760880 | Msa0805430 | 0.805802 | 1.119294e-49 | -8.615850e-47 |
Msa0760880 | Msa0814320 | 0.815190 | 1.049645e-51 | -8.615850e-47 |
Msa0760880 | Msa0824660 | 0.805547 | 1.266228e-49 | -8.615850e-47 |
Msa0760880 | Msa0830530 | 0.814524 | 1.474423e-51 | -8.615850e-47 |
Msa0760880 | Msa0846140 | 0.809370 | 1.956404e-50 | -8.615850e-47 |
Msa0760880 | Msa0856920 | 0.814288 | 1.662786e-51 | -8.615850e-47 |
Msa0760880 | Msa0906690 | 0.800455 | 1.429649e-48 | -8.615850e-47 |
Msa0760880 | Msa0980940 | 0.816960 | 4.223357e-52 | -8.615850e-47 |
Msa0760880 | Msa1041210 | 0.808164 | 3.542401e-50 | -8.615850e-47 |
Msa0760880 | Msa1041670 | 0.801387 | 9.223248e-49 | -8.615850e-47 |
Msa0760880 | Msa1051600 | 0.800548 | 1.368486e-48 | -8.615850e-47 |
Msa0760880 | Msa1063950 | 0.820622 | 6.223990e-53 | -8.615850e-47 |
Msa0760880 | Msa1079860 | 0.802386 | 5.750928e-49 | -8.615850e-47 |
Msa0760880 | Msa1082500 | 0.811686 | 6.182482e-51 | -8.615850e-47 |
Msa0760880 | Msa1085200 | 0.805680 | 1.187655e-49 | -8.615850e-47 |
Msa0760880 | Msa1087980 | 0.806102 | 9.679820e-50 | -8.615850e-47 |
Msa0760880 | Msa1111110 | 0.816919 | 4.313132e-52 | -8.615850e-47 |
Msa0760880 | Msa1165740 | 0.828222 | 1.013579e-54 | -8.615850e-47 |
Msa0760880 | Msa1170280 | 0.800189 | 1.619655e-48 | -8.615850e-47 |
Msa0760880 | Msa1199570 | 0.814881 | 1.228959e-51 | -8.615850e-47 |
Msa0760880 | Msa1204530 | 0.800143 | 1.655045e-48 | -8.615850e-47 |
Msa0760880 | Msa1224830 | 0.802874 | 4.560666e-49 | -8.615850e-47 |
Msa0760880 | Msa1228290 | 0.805218 | 1.484030e-49 | -8.615850e-47 |
Msa0760880 | Msa1252190 | 0.802561 | 5.291733e-49 | -8.615850e-47 |
Msa0760880 | Msa1306390 | 0.809460 | 1.871769e-50 | -8.615850e-47 |
Msa0760880 | Msa1320740 | 0.813680 | 2.263828e-51 | -8.615850e-47 |
Msa0760880 | Msa1328640 | 0.802409 | 5.686845e-49 | -8.615850e-47 |
Msa0760880 | Msa1328710 | 0.808580 | 2.887790e-50 | -8.615850e-47 |
Msa0760880 | Msa1333680 | 0.800681 | 1.285909e-48 | -8.615850e-47 |
Msa0760880 | Msa1366600 | 0.814104 | 1.825984e-51 | -8.615850e-47 |
Msa0760880 | Msa1374040 | 0.804772 | 1.840181e-49 | -8.615850e-47 |
Msa0760880 | Msa1388450 | 0.804151 | 2.479194e-49 | -8.615850e-47 |
Msa0760880 | Msa1402270 | 0.820623 | 6.218822e-53 | -8.615850e-47 |
Msa0760880 | Msa1402400 | 0.800298 | 1.539221e-48 | -8.615850e-47 |
Msa0760880 | Msa1407580 | 0.804403 | 2.196834e-49 | -8.615850e-47 |
Msa0760880 | Msa1427060 | 0.805516 | 1.285631e-49 | -8.615850e-47 |
Msa0137840 | Msa0760880 | 0.805053 | 1.607525e-49 | -8.615850e-47 |
Msa0142480 | Msa0760880 | 0.819807 | 9.567683e-53 | -8.615850e-47 |
Msa0146260 | Msa0760880 | 0.803879 | 2.823323e-49 | -8.615850e-47 |
Msa0155330 | Msa0760880 | 0.814900 | 1.217484e-51 | -8.615850e-47 |
Msa0159930 | Msa0760880 | 0.806193 | 9.265715e-50 | -8.615850e-47 |
Msa0372660 | Msa0760880 | 0.814299 | 1.653438e-51 | -8.615850e-47 |
Msa0372670 | Msa0760880 | 0.813290 | 2.758769e-51 | -8.615850e-47 |
Msa0376350 | Msa0760880 | 0.810188 | 1.305024e-50 | -8.615850e-47 |
Msa0410500 | Msa0760880 | 0.822153 | 2.757957e-53 | -8.615850e-47 |
Msa0410650 | Msa0760880 | 0.813233 | 2.839398e-51 | -8.615850e-47 |
Msa0423900 | Msa0760880 | 0.817760 | 2.790477e-52 | -8.615850e-47 |
Msa0424790 | Msa0760880 | 0.807794 | 4.246691e-50 | -8.615850e-47 |
Msa0433640 | Msa0760880 | 0.818636 | 1.767289e-52 | -8.615850e-47 |
Msa0443880 | Msa0760880 | 0.813606 | 2.351295e-51 | -8.615850e-47 |
Msa0479170 | Msa0760880 | 0.803310 | 3.706029e-49 | -8.615850e-47 |
Msa0479200 | Msa0760880 | 0.812057 | 5.134244e-51 | -8.615850e-47 |
Msa0245850 | Msa0760880 | 0.812557 | 3.993387e-51 | -8.615850e-47 |
Msa0270100 | Msa0760880 | 0.802640 | 5.096271e-49 | -8.615850e-47 |
Msa0271810 | Msa0760880 | 0.816854 | 4.461921e-52 | -8.615850e-47 |
Msa0284410 | Msa0760880 | 0.811075 | 8.394434e-51 | -8.615850e-47 |
Msa0287310 | Msa0760880 | 0.804479 | 2.118022e-49 | -8.615850e-47 |
Msa0292120 | Msa0760880 | 0.801798 | 7.597121e-49 | -8.615850e-47 |
Msa0295590 | Msa0760880 | 0.803303 | 3.718126e-49 | -8.615850e-47 |
Msa0299730 | Msa0760880 | 0.800975 | 1.119927e-48 | -8.615850e-47 |
Msa0302980 | Msa0760880 | 0.807415 | 5.111252e-50 | -8.615850e-47 |
Msa0311860 | Msa0760880 | 0.801577 | 8.431334e-49 | -8.615850e-47 |
Msa0317730 | Msa0760880 | 0.812468 | 4.176547e-51 | -8.615850e-47 |
Msa0484780 | Msa0760880 | 0.823239 | 1.541295e-53 | -8.615850e-47 |
Msa0485120 | Msa0760880 | 0.802915 | 4.472711e-49 | -8.615850e-47 |
Msa0507680 | Msa0760880 | 0.816948 | 4.249229e-52 | -8.615850e-47 |
Msa0512870 | Msa0760880 | 0.816577 | 5.146901e-52 | -8.615850e-47 |
Msa0515640 | Msa0760880 | 0.800420 | 1.453611e-48 | -8.615850e-47 |
Msa0521500 | Msa0760880 | 0.803658 | 3.138782e-49 | -8.615850e-47 |
Msa0521540 | Msa0760880 | 0.824133 | 9.521257e-54 | -8.615850e-47 |
Msa0558230 | Msa0760880 | 0.802786 | 4.755407e-49 | -8.615850e-47 |
Msa0577500 | Msa0760880 | 0.803449 | 3.468183e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0760880 | MtrunA17_Chr2g0282761 | 88.889 | 63 | 7 | 0 | 1 | 63 | 1 | 63 | 3.21e-33 | 117 |
Msa0760880 | MtrunA17_Chr4g0040501 | 76.190 | 63 | 15 | 0 | 1 | 63 | 1 | 63 | 1.16e-27 | 102 |
Msa0760880 | MtrunA17_Chr2g0282741 | 76.190 | 63 | 14 | 1 | 1 | 62 | 1 | 63 | 1.18e-26 | 99.8 |
Msa0760880 | MtrunA17_Chr4g0006391 | 68.254 | 63 | 20 | 0 | 1 | 63 | 1 | 63 | 1.41e-26 | 99.4 |
Msa0760880 | MtrunA17_Chr3g0138471 | 68.254 | 63 | 20 | 0 | 1 | 63 | 1 | 63 | 3.27e-25 | 95.5 |
Msa0760880 | MtrunA17_Chr2g0324921 | 68.254 | 63 | 20 | 0 | 1 | 63 | 1 | 63 | 3.09e-24 | 93.2 |
Msa0760880 | MtrunA17_Chr7g0263971 | 53.333 | 60 | 28 | 0 | 4 | 63 | 369 | 428 | 1.94e-16 | 72.4 |
Msa0760880 | MtrunA17_Chr7g0269841 | 59.322 | 59 | 23 | 1 | 5 | 63 | 27 | 84 | 3.54e-16 | 71.2 |
Msa0760880 | MtrunA17_Chr3g0123861 | 56.667 | 60 | 24 | 1 | 4 | 63 | 82 | 139 | 9.26e-14 | 64.7 |
Msa0760880 | MtrunA17_Chr5g0415731 | 47.059 | 68 | 29 | 1 | 4 | 64 | 5 | 72 | 2.77e-13 | 61.2 |
Msa0760880 | MtrunA17_Chr5g0427221 | 50.000 | 62 | 29 | 2 | 4 | 64 | 48 | 108 | 1.12e-12 | 59.3 |
Msa0760880 | MtrunA17_Chr6g0478651 | 53.125 | 64 | 24 | 2 | 2 | 63 | 66 | 125 | 1.24e-12 | 61.6 |
Msa0760880 | MtrunA17_Chr3g0087741 | 47.541 | 61 | 31 | 1 | 4 | 64 | 89 | 148 | 1.82e-12 | 61.2 |
Msa0760880 | MtrunA17_Chr7g0271891 | 41.935 | 62 | 33 | 1 | 5 | 63 | 17 | 78 | 2.17e-12 | 59.3 |
Msa0760880 | MtrunA17_Chr8g0334811 | 51.667 | 60 | 24 | 1 | 5 | 64 | 15 | 69 | 4.48e-12 | 60.1 |
Msa0760880 | MtrunA17_Chr3g0093111 | 50.000 | 54 | 26 | 1 | 3 | 55 | 1 | 54 | 5.37e-12 | 59.7 |
Msa0760880 | MtrunA17_Chr8g0344721 | 43.077 | 65 | 32 | 1 | 4 | 63 | 10 | 74 | 6.38e-12 | 58.9 |
Msa0760880 | MtrunA17_Chr5g0426951 | 46.667 | 60 | 31 | 1 | 4 | 63 | 83 | 141 | 1.48e-11 | 58.5 |
Msa0760880 | MtrunA17_Chr1g0209551 | 48.333 | 60 | 30 | 1 | 4 | 63 | 16 | 74 | 1.91e-11 | 58.2 |
Msa0760880 | MtrunA17_Chr3g0091361 | 45.161 | 62 | 33 | 1 | 3 | 63 | 4 | 65 | 5.44e-11 | 56.2 |
Msa0760880 | MtrunA17_Chr4g0021141 | 49.020 | 51 | 25 | 1 | 4 | 54 | 22 | 71 | 5.49e-11 | 54.7 |
Msa0760880 | MtrunA17_Chr4g0010781 | 46.667 | 60 | 31 | 1 | 5 | 64 | 87 | 145 | 6.04e-11 | 57.0 |
Msa0760880 | MtrunA17_Chr6g0460461 | 42.105 | 57 | 29 | 1 | 3 | 55 | 1 | 57 | 6.48e-11 | 55.8 |
Msa0760880 | MtrunA17_Chr6g0460411 | 42.105 | 57 | 29 | 1 | 3 | 55 | 1 | 57 | 8.98e-11 | 55.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0760880 | AT3G08910.1 | 69.841 | 63 | 19 | 0 | 1 | 63 | 1 | 63 | 1.55e-26 | 99.4 |
Msa0760880 | AT5G01390.2 | 68.254 | 63 | 20 | 0 | 1 | 63 | 1 | 63 | 5.96e-26 | 97.1 |
Msa0760880 | AT5G01390.1 | 68.254 | 63 | 20 | 0 | 1 | 63 | 1 | 63 | 7.05e-26 | 97.8 |
Msa0760880 | AT5G01390.3 | 68.254 | 63 | 20 | 0 | 1 | 63 | 1 | 63 | 1.54e-25 | 95.1 |
Msa0760880 | AT5G01390.4 | 68.254 | 63 | 20 | 0 | 1 | 63 | 1 | 63 | 1.74e-25 | 95.1 |
Msa0760880 | AT5G25530.2 | 68.254 | 63 | 20 | 0 | 1 | 63 | 1 | 63 | 1.90e-25 | 97.1 |
Msa0760880 | AT4G28480.2 | 68.254 | 63 | 20 | 0 | 1 | 63 | 1 | 63 | 3.26e-25 | 95.5 |
Msa0760880 | AT2G20560.1 | 69.841 | 63 | 18 | 1 | 1 | 62 | 1 | 63 | 3.45e-25 | 96.3 |
Msa0760880 | AT4G28480.1 | 68.254 | 63 | 20 | 0 | 1 | 63 | 1 | 63 | 6.85e-25 | 95.5 |
Msa0760880 | AT5G25530.1 | 74.545 | 55 | 14 | 0 | 1 | 55 | 1 | 55 | 8.96e-25 | 95.1 |
Msa0760880 | AT1G10350.1 | 56.250 | 64 | 28 | 0 | 1 | 64 | 1 | 64 | 1.94e-21 | 86.3 |
Msa0760880 | AT1G59725.1 | 58.462 | 65 | 26 | 1 | 1 | 64 | 1 | 65 | 5.20e-20 | 82.0 |
Msa0760880 | AT3G47940.1 | 60.000 | 65 | 25 | 1 | 1 | 64 | 1 | 65 | 8.62e-20 | 81.6 |
Msa0760880 | AT2G41000.2 | 43.284 | 67 | 34 | 1 | 3 | 65 | 2 | 68 | 4.29e-14 | 64.7 |
Msa0760880 | AT3G62600.1 | 52.381 | 63 | 29 | 1 | 2 | 64 | 24 | 85 | 4.35e-14 | 65.9 |
Msa0760880 | AT2G41000.1 | 47.368 | 57 | 26 | 1 | 3 | 55 | 2 | 58 | 9.47e-14 | 63.5 |
Msa0760880 | AT2G22360.1 | 56.667 | 60 | 24 | 1 | 4 | 63 | 86 | 143 | 1.60e-13 | 64.7 |
Msa0760880 | AT4G39960.1 | 56.667 | 60 | 24 | 1 | 4 | 63 | 85 | 142 | 1.61e-13 | 64.7 |
Msa0760880 | AT4G39960.2 | 56.667 | 60 | 24 | 1 | 4 | 63 | 85 | 142 | 1.61e-13 | 64.7 |
Msa0760880 | AT3G17830.1 | 54.688 | 64 | 23 | 2 | 2 | 63 | 61 | 120 | 1.75e-13 | 64.7 |
Msa0760880 | AT5G48030.1 | 52.459 | 61 | 28 | 1 | 4 | 64 | 94 | 153 | 2.45e-13 | 63.9 |
Msa0760880 | AT5G03160.1 | 48.333 | 60 | 31 | 0 | 4 | 63 | 370 | 429 | 2.64e-13 | 63.9 |
Msa0760880 | AT1G56300.2 | 44.444 | 63 | 32 | 1 | 5 | 64 | 14 | 76 | 1.38e-12 | 58.9 |
Msa0760880 | AT1G56300.1 | 44.444 | 63 | 32 | 1 | 5 | 64 | 14 | 76 | 2.31e-12 | 59.3 |
Msa0760880 | AT1G59980.2 | 49.153 | 59 | 28 | 2 | 6 | 63 | 25 | 82 | 2.44e-12 | 61.2 |
Msa0760880 | AT1G59980.1 | 49.153 | 59 | 28 | 2 | 6 | 63 | 25 | 82 | 4.69e-12 | 60.5 |
Msa0760880 | AT1G68370.1 | 50.000 | 62 | 30 | 1 | 4 | 65 | 17 | 77 | 7.63e-12 | 59.7 |
Msa0760880 | AT5G16650.2 | 50.000 | 62 | 29 | 2 | 4 | 64 | 11 | 71 | 5.31e-11 | 55.8 |
Msa0760880 | AT5G16650.1 | 54.902 | 51 | 22 | 1 | 4 | 54 | 11 | 60 | 6.47e-11 | 55.1 |
Msa0760880 | AT1G28210.1 | 44.262 | 61 | 33 | 1 | 4 | 64 | 48 | 107 | 9.75e-11 | 56.6 |
Find 39 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGGATTACTATGAGATTT+TGG | 0.205034 | 5_2:+17520869 | Msa0760880:CDS |
TTATTGTCAGGATTCTTATC+AGG | 0.253732 | 5_2:-17520960 | None:intergenic |
ACAGATTAAACCTTTATTCT+TGG | 0.256184 | 5_2:-17520029 | None:intergenic |
GTAGATTTGCTGTGCGTAAT+TGG | 0.280019 | 5_2:+17520056 | Msa0760880:five_prime_UTR |
CTTATCAGGGTGCCATTTCA+TGG | 0.338061 | 5_2:-17520946 | None:intergenic |
GATTCCATGACCAAGAATAA+AGG | 0.364161 | 5_2:+17520019 | Msa0760880:five_prime_UTR |
TTGAGTTGGCACTTTGTGAA+TGG | 0.387729 | 5_2:+17521775 | Msa0760880:CDS |
ATAGAAAACTTGCCATGAAA+TGG | 0.412382 | 5_2:+17520934 | Msa0760880:CDS |
TGGTTCTAGCCTGGTGGATA+AGG | 0.413461 | 5_2:+17520186 | Msa0760880:five_prime_UTR |
CCATTCTCTCTCTTCTCCCA+AGG | 0.424472 | 5_2:-17521739 | None:intergenic |
TAAACCTTTATTCTTGGTCA+TGG | 0.433411 | 5_2:-17520023 | None:intergenic |
TGAGTTGGCACTTTGTGAAT+GGG | 0.433526 | 5_2:+17521776 | Msa0760880:CDS |
TCAGCATCATTCTTATTGTC+AGG | 0.435149 | 5_2:-17520972 | None:intergenic |
ACACTTGGCAGCCTATATAA+AGG | 0.442591 | 5_2:-17521827 | None:intergenic |
GGAAATTGTGTTTGTTGAGT+TGG | 0.451610 | 5_2:+17521761 | Msa0760880:CDS |
CCTTGGGAGAAGAGAGAGAA+TGG | 0.452579 | 5_2:+17521739 | Msa0760880:CDS |
GAAAGCAAAGTAGTGGAAGA+TGG | 0.462215 | 5_2:+17520845 | Msa0760880:exon |
TATTGTCAGGATTCTTATCA+GGG | 0.462954 | 5_2:-17520959 | None:intergenic |
TACTGTGGCGGTGGCTGAGA+TGG | 0.471767 | 5_2:+17521804 | Msa0760880:CDS |
TACATATACCTCATATGCTT+CGG | 0.471997 | 5_2:-17521015 | None:intergenic |
AAAGTAGTGGAAGATGGGTT+TGG | 0.472595 | 5_2:+17520851 | Msa0760880:exon |
ACTCATATCCGAAGCATATG+AGG | 0.475266 | 5_2:+17521007 | Msa0760880:CDS |
GAAAAGTGAAAGCAAAGTAG+TGG | 0.495138 | 5_2:+17520838 | Msa0760880:five_prime_UTR |
GGCTGAGATGGCCTTTATAT+AGG | 0.502710 | 5_2:+17521816 | Msa0760880:CDS |
AAAGCAAAGTAGTGGAAGAT+GGG | 0.505371 | 5_2:+17520846 | Msa0760880:exon |
GGTGGATAAGGCAAACATAC+AGG | 0.505654 | 5_2:+17520198 | Msa0760880:five_prime_UTR |
TGGGGTTGTTACTGTGGCGG+TGG | 0.539860 | 5_2:+17521795 | Msa0760880:CDS |
GATTTGCTGTGCGTAATTGG+AGG | 0.540099 | 5_2:+17520059 | Msa0760880:five_prime_UTR |
CTTGGGAGAAGAGAGAGAAT+GGG | 0.558864 | 5_2:+17521740 | Msa0760880:CDS |
GTATGTTTGCCTTATCCACC+AGG | 0.559232 | 5_2:-17520195 | None:intergenic |
AAAGAAAGTCCTATCTTGAG+TGG | 0.579591 | 5_2:+17520811 | Msa0760880:five_prime_UTR |
TATCCACCAGGCTAGAACCA+TGG | 0.582402 | 5_2:-17520183 | None:intergenic |
AATGTGTGGACTTTCTCTGA+TGG | 0.591588 | 5_2:+17519991 | Msa0760880:five_prime_UTR |
TTTCCATGGTTCTAGCCTGG+TGG | 0.591889 | 5_2:+17520180 | Msa0760880:five_prime_UTR |
GAATGGGGTTGTTACTGTGG+CGG | 0.610691 | 5_2:+17521792 | Msa0760880:CDS |
GAGTTGGCACTTTGTGAATG+GGG | 0.615760 | 5_2:+17521777 | Msa0760880:CDS |
TGTGAATGGGGTTGTTACTG+TGG | 0.618252 | 5_2:+17521789 | Msa0760880:CDS |
AGAGTGTCTACAAACAGAGC+AGG | 0.623091 | 5_2:-17520098 | None:intergenic |
GACTGAAATGTATTAATGTG+TGG | 0.658305 | 5_2:+17519977 | Msa0760880:five_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTCTGATTACTATTTATA+TGG | + | chr5_2:17520382-17520401 | Msa0760880:intron | 15.0% |
!! | AATAATAGATAAAATATCTG+AGG | - | chr5_2:17520415-17520434 | None:intergenic | 15.0% |
!!! | TTTTCTGATTACTATTTATA+TGG | + | chr5_2:17520382-17520401 | Msa0760880:intron | 15.0% |
!! | AATAATAGATAAAATATCTG+AGG | - | chr5_2:17520415-17520434 | None:intergenic | 15.0% |
!! | TGCAAAATTAACATTTAAGT+TGG | + | chr5_2:17520350-17520369 | Msa0760880:intron | 20.0% |
!! | TCTATTATTGTGTTCTTTAA+CGG | + | chr5_2:17520426-17520445 | Msa0760880:intron | 20.0% |
!!! | ATTTTCACTATACTTTAACA+AGG | + | chr5_2:17520452-17520471 | Msa0760880:intron | 20.0% |
!! | TTTATCTGTTACAACAAAAT+TGG | + | chr5_2:17520489-17520508 | Msa0760880:intron | 20.0% |
!! | ATTATTATTGAACAAGACTA+TGG | - | chr5_2:17520752-17520771 | None:intergenic | 20.0% |
!! | TGCAAAATTAACATTTAAGT+TGG | + | chr5_2:17520350-17520369 | Msa0760880:intron | 20.0% |
!! | TCTATTATTGTGTTCTTTAA+CGG | + | chr5_2:17520426-17520445 | Msa0760880:intron | 20.0% |
!!! | ATTTTCACTATACTTTAACA+AGG | + | chr5_2:17520452-17520471 | Msa0760880:intron | 20.0% |
!! | TTTATCTGTTACAACAAAAT+TGG | + | chr5_2:17520489-17520508 | Msa0760880:intron | 20.0% |
!! | ATTATTATTGAACAAGACTA+TGG | - | chr5_2:17520752-17520771 | None:intergenic | 20.0% |
! | ACAGATTAAACCTTTATTCT+TGG | - | chr5_2:17520032-17520051 | None:intergenic | 25.0% |
! | AATAACCATCATCATGTAAT+GGG | - | chr5_2:17520252-17520271 | None:intergenic | 25.0% |
! | AAATAACCATCATCATGTAA+TGG | - | chr5_2:17520253-17520272 | None:intergenic | 25.0% |
! | AATGTGGTATACTTAAAGTT+TGG | - | chr5_2:17520320-17520339 | None:intergenic | 25.0% |
!! | TAATGCTGAAATTTTCTGTT+GGG | + | chr5_2:17520618-17520637 | Msa0760880:intron | 25.0% |
!! | TTTGGATTACTATGAGATTT+TGG | + | chr5_2:17520869-17520888 | Msa0760880:CDS | 25.0% |
! | GTTTAATTGCTACAAAACTA+TGG | + | chr5_2:17521060-17521079 | Msa0760880:intron | 25.0% |
! | TTATTACCTGAACTTTGAAT+TGG | + | chr5_2:17521392-17521411 | Msa0760880:intron | 25.0% |
! | GTGATGAATTTACTTCAATT+TGG | + | chr5_2:17521632-17521651 | Msa0760880:intron | 25.0% |
!!! | ATTTGGCTTAATTTTGATTC+TGG | + | chr5_2:17521649-17521668 | Msa0760880:intron | 25.0% |
!!! | ATTTTGATTCTGGTAAAGTT+AGG | + | chr5_2:17521659-17521678 | Msa0760880:intron | 25.0% |
!!! | TTTTGATTCTGGTAAAGTTA+GGG | + | chr5_2:17521660-17521679 | Msa0760880:intron | 25.0% |
! | ACAGATTAAACCTTTATTCT+TGG | - | chr5_2:17520032-17520051 | None:intergenic | 25.0% |
! | AATAACCATCATCATGTAAT+GGG | - | chr5_2:17520252-17520271 | None:intergenic | 25.0% |
! | AAATAACCATCATCATGTAA+TGG | - | chr5_2:17520253-17520272 | None:intergenic | 25.0% |
! | AATGTGGTATACTTAAAGTT+TGG | - | chr5_2:17520320-17520339 | None:intergenic | 25.0% |
!! | TAATGCTGAAATTTTCTGTT+GGG | + | chr5_2:17520618-17520637 | Msa0760880:intron | 25.0% |
!! | TTTGGATTACTATGAGATTT+TGG | + | chr5_2:17520869-17520888 | Msa0760880:CDS | 25.0% |
! | GTTTAATTGCTACAAAACTA+TGG | + | chr5_2:17521060-17521079 | Msa0760880:intron | 25.0% |
! | TTATTACCTGAACTTTGAAT+TGG | + | chr5_2:17521392-17521411 | Msa0760880:intron | 25.0% |
! | GTGATGAATTTACTTCAATT+TGG | + | chr5_2:17521632-17521651 | Msa0760880:intron | 25.0% |
!!! | ATTTGGCTTAATTTTGATTC+TGG | + | chr5_2:17521649-17521668 | Msa0760880:intron | 25.0% |
!!! | ATTTTGATTCTGGTAAAGTT+AGG | + | chr5_2:17521659-17521678 | Msa0760880:intron | 25.0% |
!!! | TTTTGATTCTGGTAAAGTTA+GGG | + | chr5_2:17521660-17521679 | Msa0760880:intron | 25.0% |
GACTGAAATGTATTAATGTG+TGG | + | chr5_2:17519977-17519996 | Msa0760880:five_prime_UTR | 30.0% | |
TAAACCTTTATTCTTGGTCA+TGG | - | chr5_2:17520026-17520045 | None:intergenic | 30.0% | |
TTACAGTTTCAAAAAAGGTC+GGG | - | chr5_2:17520133-17520152 | None:intergenic | 30.0% | |
GTTACAGTTTCAAAAAAGGT+CGG | - | chr5_2:17520134-17520153 | None:intergenic | 30.0% | |
CATCGTTACAGTTTCAAAAA+AGG | - | chr5_2:17520138-17520157 | None:intergenic | 30.0% | |
! | TGTTGCAAAAAGATTTTCCA+TGG | + | chr5_2:17520166-17520185 | Msa0760880:five_prime_UTR | 30.0% |
! | AATGGGTTTGATCAAAACAA+AGG | - | chr5_2:17520235-17520254 | None:intergenic | 30.0% |
TTAAAGTTTGGCCTAATTAC+TGG | - | chr5_2:17520308-17520327 | None:intergenic | 30.0% | |
TTTGCACTATGAAAAGAATG+TGG | - | chr5_2:17520336-17520355 | None:intergenic | 30.0% | |
TTCAAAATTCCTGCTAGATA+GGG | + | chr5_2:17520517-17520536 | Msa0760880:intron | 30.0% | |
! | CTAATGCTGAAATTTTCTGT+TGG | + | chr5_2:17520617-17520636 | Msa0760880:intron | 30.0% |
! | AATGCTGAAATTTTCTGTTG+GGG | + | chr5_2:17520619-17520638 | Msa0760880:intron | 30.0% |
!!! | AGGTTTTTTTGTCTTGTTTC+TGG | - | chr5_2:17520786-17520805 | None:intergenic | 30.0% |
ATAGAAAACTTGCCATGAAA+TGG | + | chr5_2:17520934-17520953 | Msa0760880:CDS | 30.0% | |
TATTGTCAGGATTCTTATCA+GGG | - | chr5_2:17520962-17520981 | None:intergenic | 30.0% | |
TTATTGTCAGGATTCTTATC+AGG | - | chr5_2:17520963-17520982 | None:intergenic | 30.0% | |
TACATATACCTCATATGCTT+CGG | - | chr5_2:17521018-17521037 | None:intergenic | 30.0% | |
AGTTTGGACCGAAAATAAAT+CGG | + | chr5_2:17521451-17521470 | Msa0760880:intron | 30.0% | |
!!! | GAAGAACACCGATTTATTTT+CGG | - | chr5_2:17521462-17521481 | None:intergenic | 30.0% |
TAAGAGAAGTGATAAGAAGA+GGG | - | chr5_2:17521523-17521542 | None:intergenic | 30.0% | |
ACTGTGATCATATGAATTCT+TGG | + | chr5_2:17521542-17521561 | Msa0760880:intron | 30.0% | |
TGCTTGAATTGCAATTTCTA+AGG | + | chr5_2:17521571-17521590 | Msa0760880:intron | 30.0% | |
GACTGAAATGTATTAATGTG+TGG | + | chr5_2:17519977-17519996 | Msa0760880:five_prime_UTR | 30.0% | |
TAAACCTTTATTCTTGGTCA+TGG | - | chr5_2:17520026-17520045 | None:intergenic | 30.0% | |
TTACAGTTTCAAAAAAGGTC+GGG | - | chr5_2:17520133-17520152 | None:intergenic | 30.0% | |
GTTACAGTTTCAAAAAAGGT+CGG | - | chr5_2:17520134-17520153 | None:intergenic | 30.0% | |
CATCGTTACAGTTTCAAAAA+AGG | - | chr5_2:17520138-17520157 | None:intergenic | 30.0% | |
! | TGTTGCAAAAAGATTTTCCA+TGG | + | chr5_2:17520166-17520185 | Msa0760880:five_prime_UTR | 30.0% |
! | AATGGGTTTGATCAAAACAA+AGG | - | chr5_2:17520235-17520254 | None:intergenic | 30.0% |
TTAAAGTTTGGCCTAATTAC+TGG | - | chr5_2:17520308-17520327 | None:intergenic | 30.0% | |
TTTGCACTATGAAAAGAATG+TGG | - | chr5_2:17520336-17520355 | None:intergenic | 30.0% | |
TTCAAAATTCCTGCTAGATA+GGG | + | chr5_2:17520517-17520536 | Msa0760880:intron | 30.0% | |
! | CTAATGCTGAAATTTTCTGT+TGG | + | chr5_2:17520617-17520636 | Msa0760880:intron | 30.0% |
! | AATGCTGAAATTTTCTGTTG+GGG | + | chr5_2:17520619-17520638 | Msa0760880:intron | 30.0% |
!!! | AGGTTTTTTTGTCTTGTTTC+TGG | - | chr5_2:17520786-17520805 | None:intergenic | 30.0% |
ATAGAAAACTTGCCATGAAA+TGG | + | chr5_2:17520934-17520953 | Msa0760880:CDS | 30.0% | |
TATTGTCAGGATTCTTATCA+GGG | - | chr5_2:17520962-17520981 | None:intergenic | 30.0% | |
TTATTGTCAGGATTCTTATC+AGG | - | chr5_2:17520963-17520982 | None:intergenic | 30.0% | |
TACATATACCTCATATGCTT+CGG | - | chr5_2:17521018-17521037 | None:intergenic | 30.0% | |
AGTTTGGACCGAAAATAAAT+CGG | + | chr5_2:17521451-17521470 | Msa0760880:intron | 30.0% | |
!!! | GAAGAACACCGATTTATTTT+CGG | - | chr5_2:17521462-17521481 | None:intergenic | 30.0% |
TAAGAGAAGTGATAAGAAGA+GGG | - | chr5_2:17521523-17521542 | None:intergenic | 30.0% | |
ACTGTGATCATATGAATTCT+TGG | + | chr5_2:17521542-17521561 | Msa0760880:intron | 30.0% | |
TGCTTGAATTGCAATTTCTA+AGG | + | chr5_2:17521571-17521590 | Msa0760880:intron | 30.0% | |
GATTCCATGACCAAGAATAA+AGG | + | chr5_2:17520019-17520038 | Msa0760880:five_prime_UTR | 35.0% | |
TCAAACCCATTACATGATGA+TGG | + | chr5_2:17520244-17520263 | Msa0760880:intron | 35.0% | |
! | CTGACAAGGTTTCTAGAAAA+TGG | - | chr5_2:17520283-17520302 | None:intergenic | 35.0% |
CTGTTACAACAAAATTGGAG+AGG | + | chr5_2:17520494-17520513 | Msa0760880:intron | 35.0% | |
GTTCAAAATTCCTGCTAGAT+AGG | + | chr5_2:17520516-17520535 | Msa0760880:intron | 35.0% | |
ACATATTTACCCTATCTAGC+AGG | - | chr5_2:17520529-17520548 | None:intergenic | 35.0% | |
GTTGATCAGAAACTTCACTT+TGG | - | chr5_2:17520715-17520734 | None:intergenic | 35.0% | |
! | GATAGGACTTTCTTTTCTTC+AGG | - | chr5_2:17520806-17520825 | None:intergenic | 35.0% |
AAAGAAAGTCCTATCTTGAG+TGG | + | chr5_2:17520811-17520830 | Msa0760880:five_prime_UTR | 35.0% | |
! | TTTTCTCTTCCACTCAAGAT+AGG | - | chr5_2:17520823-17520842 | None:intergenic | 35.0% |
GAAAAGTGAAAGCAAAGTAG+TGG | + | chr5_2:17520838-17520857 | Msa0760880:five_prime_UTR | 35.0% | |
! | AAAGCAAAGTAGTGGAAGAT+GGG | + | chr5_2:17520846-17520865 | Msa0760880:exon | 35.0% |
! | GGATTACTATGAGATTTTGG+AGG | + | chr5_2:17520872-17520891 | Msa0760880:CDS | 35.0% |
TCAGCATCATTCTTATTGTC+AGG | - | chr5_2:17520975-17520994 | None:intergenic | 35.0% | |
! | ACTGATCATTCATGTTTCTG+AGG | + | chr5_2:17521086-17521105 | Msa0760880:intron | 35.0% |
! | TCTTTGAAAGAACAAGTCTG+AGG | + | chr5_2:17521285-17521304 | Msa0760880:intron | 35.0% |
GGTTCACAGCTACAAATAAA+CGG | - | chr5_2:17521334-17521353 | None:intergenic | 35.0% | |
TCATTGCAAAAACTCATCGA+AGG | - | chr5_2:17521355-17521374 | None:intergenic | 35.0% | |
GAATCTCCAATTCAAAGTTC+AGG | - | chr5_2:17521401-17521420 | None:intergenic | 35.0% | |
AAAAGATCCTTGAAAGCTTC+TGG | + | chr5_2:17521426-17521445 | Msa0760880:intron | 35.0% | |
AAACTTACCAGAAGCTTTCA+AGG | - | chr5_2:17521436-17521455 | None:intergenic | 35.0% | |
TTGAAAGCTTCTGGTAAGTT+TGG | + | chr5_2:17521435-17521454 | Msa0760880:intron | 35.0% | |
GTAAGAGAAGTGATAAGAAG+AGG | - | chr5_2:17521524-17521543 | None:intergenic | 35.0% | |
!! | ACTGTTAGGATTTTGATCCT+TGG | + | chr5_2:17521722-17521741 | Msa0760880:intron | 35.0% |
!! | CTGTTAGGATTTTGATCCTT+GGG | + | chr5_2:17521723-17521742 | Msa0760880:intron | 35.0% |
! | GGAAATTGTGTTTGTTGAGT+TGG | + | chr5_2:17521761-17521780 | Msa0760880:CDS | 35.0% |
GATTCCATGACCAAGAATAA+AGG | + | chr5_2:17520019-17520038 | Msa0760880:five_prime_UTR | 35.0% | |
TCAAACCCATTACATGATGA+TGG | + | chr5_2:17520244-17520263 | Msa0760880:intron | 35.0% | |
! | CTGACAAGGTTTCTAGAAAA+TGG | - | chr5_2:17520283-17520302 | None:intergenic | 35.0% |
CTGTTACAACAAAATTGGAG+AGG | + | chr5_2:17520494-17520513 | Msa0760880:intron | 35.0% | |
GTTCAAAATTCCTGCTAGAT+AGG | + | chr5_2:17520516-17520535 | Msa0760880:intron | 35.0% | |
ACATATTTACCCTATCTAGC+AGG | - | chr5_2:17520529-17520548 | None:intergenic | 35.0% | |
GTTGATCAGAAACTTCACTT+TGG | - | chr5_2:17520715-17520734 | None:intergenic | 35.0% | |
! | GATAGGACTTTCTTTTCTTC+AGG | - | chr5_2:17520806-17520825 | None:intergenic | 35.0% |
AAAGAAAGTCCTATCTTGAG+TGG | + | chr5_2:17520811-17520830 | Msa0760880:five_prime_UTR | 35.0% | |
! | TTTTCTCTTCCACTCAAGAT+AGG | - | chr5_2:17520823-17520842 | None:intergenic | 35.0% |
GAAAAGTGAAAGCAAAGTAG+TGG | + | chr5_2:17520838-17520857 | Msa0760880:five_prime_UTR | 35.0% | |
! | AAAGCAAAGTAGTGGAAGAT+GGG | + | chr5_2:17520846-17520865 | Msa0760880:exon | 35.0% |
! | GGATTACTATGAGATTTTGG+AGG | + | chr5_2:17520872-17520891 | Msa0760880:CDS | 35.0% |
TCAGCATCATTCTTATTGTC+AGG | - | chr5_2:17520975-17520994 | None:intergenic | 35.0% | |
! | ACTGATCATTCATGTTTCTG+AGG | + | chr5_2:17521086-17521105 | Msa0760880:intron | 35.0% |
! | TCTTTGAAAGAACAAGTCTG+AGG | + | chr5_2:17521285-17521304 | Msa0760880:intron | 35.0% |
GGTTCACAGCTACAAATAAA+CGG | - | chr5_2:17521334-17521353 | None:intergenic | 35.0% | |
TCATTGCAAAAACTCATCGA+AGG | - | chr5_2:17521355-17521374 | None:intergenic | 35.0% | |
GAATCTCCAATTCAAAGTTC+AGG | - | chr5_2:17521401-17521420 | None:intergenic | 35.0% | |
AAAAGATCCTTGAAAGCTTC+TGG | + | chr5_2:17521426-17521445 | Msa0760880:intron | 35.0% | |
AAACTTACCAGAAGCTTTCA+AGG | - | chr5_2:17521436-17521455 | None:intergenic | 35.0% | |
TTGAAAGCTTCTGGTAAGTT+TGG | + | chr5_2:17521435-17521454 | Msa0760880:intron | 35.0% | |
GTAAGAGAAGTGATAAGAAG+AGG | - | chr5_2:17521524-17521543 | None:intergenic | 35.0% | |
!! | ACTGTTAGGATTTTGATCCT+TGG | + | chr5_2:17521722-17521741 | Msa0760880:intron | 35.0% |
!! | CTGTTAGGATTTTGATCCTT+GGG | + | chr5_2:17521723-17521742 | Msa0760880:intron | 35.0% |
! | GGAAATTGTGTTTGTTGAGT+TGG | + | chr5_2:17521761-17521780 | Msa0760880:CDS | 35.0% |
AATGTGTGGACTTTCTCTGA+TGG | + | chr5_2:17519991-17520010 | Msa0760880:five_prime_UTR | 40.0% | |
!! | GTAGATTTGCTGTGCGTAAT+TGG | + | chr5_2:17520056-17520075 | Msa0760880:five_prime_UTR | 40.0% |
CCTAATTACTGGAACTGACA+AGG | - | chr5_2:17520297-17520316 | None:intergenic | 40.0% | |
CCTTGTCAGTTCCAGTAATT+AGG | + | chr5_2:17520294-17520313 | Msa0760880:intron | 40.0% | |
! | TTTTGACACACCATGTCTGT+CGG | + | chr5_2:17520574-17520593 | Msa0760880:intron | 40.0% |
! | GAAAGCAAAGTAGTGGAAGA+TGG | + | chr5_2:17520845-17520864 | Msa0760880:exon | 40.0% |
! | AAAGTAGTGGAAGATGGGTT+TGG | + | chr5_2:17520851-17520870 | Msa0760880:exon | 40.0% |
ACTCATATCCGAAGCATATG+AGG | + | chr5_2:17521007-17521026 | Msa0760880:CDS | 40.0% | |
CTTCTCTCTTTCTTCTTCAC+TGG | + | chr5_2:17521478-17521497 | Msa0760880:intron | 40.0% | |
! | GTTCGATGATGATGATTCAG+TGG | + | chr5_2:17521593-17521612 | Msa0760880:intron | 40.0% |
GTGAATGTTCTTCGTGTTCT+TGG | + | chr5_2:17521687-17521706 | Msa0760880:intron | 40.0% | |
TTCGTGTTCTTGGCAATTTC+TGG | + | chr5_2:17521697-17521716 | Msa0760880:intron | 40.0% | |
! | GGCAATTTCTGGAAACTGTT+AGG | + | chr5_2:17521708-17521727 | Msa0760880:intron | 40.0% |
!! | TTGAGTTGGCACTTTGTGAA+TGG | + | chr5_2:17521775-17521794 | Msa0760880:CDS | 40.0% |
! | TGAGTTGGCACTTTGTGAAT+GGG | + | chr5_2:17521776-17521795 | Msa0760880:CDS | 40.0% |
AATGTGTGGACTTTCTCTGA+TGG | + | chr5_2:17519991-17520010 | Msa0760880:five_prime_UTR | 40.0% | |
!! | GTAGATTTGCTGTGCGTAAT+TGG | + | chr5_2:17520056-17520075 | Msa0760880:five_prime_UTR | 40.0% |
CCTAATTACTGGAACTGACA+AGG | - | chr5_2:17520297-17520316 | None:intergenic | 40.0% | |
CCTTGTCAGTTCCAGTAATT+AGG | + | chr5_2:17520294-17520313 | Msa0760880:intron | 40.0% | |
! | TTTTGACACACCATGTCTGT+CGG | + | chr5_2:17520574-17520593 | Msa0760880:intron | 40.0% |
! | GAAAGCAAAGTAGTGGAAGA+TGG | + | chr5_2:17520845-17520864 | Msa0760880:exon | 40.0% |
! | AAAGTAGTGGAAGATGGGTT+TGG | + | chr5_2:17520851-17520870 | Msa0760880:exon | 40.0% |
ACTCATATCCGAAGCATATG+AGG | + | chr5_2:17521007-17521026 | Msa0760880:CDS | 40.0% | |
CTTCTCTCTTTCTTCTTCAC+TGG | + | chr5_2:17521478-17521497 | Msa0760880:intron | 40.0% | |
! | GTTCGATGATGATGATTCAG+TGG | + | chr5_2:17521593-17521612 | Msa0760880:intron | 40.0% |
GTGAATGTTCTTCGTGTTCT+TGG | + | chr5_2:17521687-17521706 | Msa0760880:intron | 40.0% | |
TTCGTGTTCTTGGCAATTTC+TGG | + | chr5_2:17521697-17521716 | Msa0760880:intron | 40.0% | |
! | GGCAATTTCTGGAAACTGTT+AGG | + | chr5_2:17521708-17521727 | Msa0760880:intron | 40.0% |
!! | TTGAGTTGGCACTTTGTGAA+TGG | + | chr5_2:17521775-17521794 | Msa0760880:CDS | 40.0% |
! | TGAGTTGGCACTTTGTGAAT+GGG | + | chr5_2:17521776-17521795 | Msa0760880:CDS | 40.0% |
!! | GATTTGCTGTGCGTAATTGG+AGG | + | chr5_2:17520059-17520078 | Msa0760880:five_prime_UTR | 45.0% |
! | AGAGTGTCTACAAACAGAGC+AGG | - | chr5_2:17520101-17520120 | None:intergenic | 45.0% |
!!! | GATTTTCCATGGTTCTAGCC+TGG | + | chr5_2:17520177-17520196 | Msa0760880:five_prime_UTR | 45.0% |
GTATGTTTGCCTTATCCACC+AGG | - | chr5_2:17520198-17520217 | None:intergenic | 45.0% | |
GGTGGATAAGGCAAACATAC+AGG | + | chr5_2:17520198-17520217 | Msa0760880:five_prime_UTR | 45.0% | |
!! | CTTATCAGGGTGCCATTTCA+TGG | - | chr5_2:17520949-17520968 | None:intergenic | 45.0% |
CTTGGGAGAAGAGAGAGAAT+GGG | + | chr5_2:17521740-17521759 | Msa0760880:CDS | 45.0% | |
GAGTTGGCACTTTGTGAATG+GGG | + | chr5_2:17521777-17521796 | Msa0760880:CDS | 45.0% | |
TGTGAATGGGGTTGTTACTG+TGG | + | chr5_2:17521789-17521808 | Msa0760880:CDS | 45.0% | |
GGCTGAGATGGCCTTTATAT+AGG | + | chr5_2:17521816-17521835 | Msa0760880:CDS | 45.0% | |
!! | GATTTGCTGTGCGTAATTGG+AGG | + | chr5_2:17520059-17520078 | Msa0760880:five_prime_UTR | 45.0% |
! | AGAGTGTCTACAAACAGAGC+AGG | - | chr5_2:17520101-17520120 | None:intergenic | 45.0% |
!!! | GATTTTCCATGGTTCTAGCC+TGG | + | chr5_2:17520177-17520196 | Msa0760880:five_prime_UTR | 45.0% |
GTATGTTTGCCTTATCCACC+AGG | - | chr5_2:17520198-17520217 | None:intergenic | 45.0% | |
GGTGGATAAGGCAAACATAC+AGG | + | chr5_2:17520198-17520217 | Msa0760880:five_prime_UTR | 45.0% | |
!! | CTTATCAGGGTGCCATTTCA+TGG | - | chr5_2:17520949-17520968 | None:intergenic | 45.0% |
CTTGGGAGAAGAGAGAGAAT+GGG | + | chr5_2:17521740-17521759 | Msa0760880:CDS | 45.0% | |
GAGTTGGCACTTTGTGAATG+GGG | + | chr5_2:17521777-17521796 | Msa0760880:CDS | 45.0% | |
TGTGAATGGGGTTGTTACTG+TGG | + | chr5_2:17521789-17521808 | Msa0760880:CDS | 45.0% | |
!! | TTTCCATGGTTCTAGCCTGG+TGG | + | chr5_2:17520180-17520199 | Msa0760880:five_prime_UTR | 50.0% |
TATCCACCAGGCTAGAACCA+TGG | - | chr5_2:17520186-17520205 | None:intergenic | 50.0% | |
!! | TGGTTCTAGCCTGGTGGATA+AGG | + | chr5_2:17520186-17520205 | Msa0760880:five_prime_UTR | 50.0% |
! | ACCATGTCTGTCGGTGTTTG+TGG | + | chr5_2:17520583-17520602 | Msa0760880:intron | 50.0% |
TCCACAAACACCGACAGACA+TGG | - | chr5_2:17520587-17520606 | None:intergenic | 50.0% | |
CCATTCTCTCTCTTCTCCCA+AGG | - | chr5_2:17521742-17521761 | None:intergenic | 50.0% | |
CCTTGGGAGAAGAGAGAGAA+TGG | + | chr5_2:17521739-17521758 | Msa0760880:CDS | 50.0% | |
GAATGGGGTTGTTACTGTGG+CGG | + | chr5_2:17521792-17521811 | Msa0760880:CDS | 50.0% | |
!! | TTTCCATGGTTCTAGCCTGG+TGG | + | chr5_2:17520180-17520199 | Msa0760880:five_prime_UTR | 50.0% |
TATCCACCAGGCTAGAACCA+TGG | - | chr5_2:17520186-17520205 | None:intergenic | 50.0% | |
!! | TGGTTCTAGCCTGGTGGATA+AGG | + | chr5_2:17520186-17520205 | Msa0760880:five_prime_UTR | 50.0% |
! | ACCATGTCTGTCGGTGTTTG+TGG | + | chr5_2:17520583-17520602 | Msa0760880:intron | 50.0% |
TCCACAAACACCGACAGACA+TGG | - | chr5_2:17520587-17520606 | None:intergenic | 50.0% | |
CCATTCTCTCTCTTCTCCCA+AGG | - | chr5_2:17521742-17521761 | None:intergenic | 50.0% | |
CCTTGGGAGAAGAGAGAGAA+TGG | + | chr5_2:17521739-17521758 | Msa0760880:CDS | 50.0% | |
GAATGGGGTTGTTACTGTGG+CGG | + | chr5_2:17521792-17521811 | Msa0760880:CDS | 50.0% | |
TGGGGTTGTTACTGTGGCGG+TGG | + | chr5_2:17521795-17521814 | Msa0760880:CDS | 60.0% | |
TACTGTGGCGGTGGCTGAGA+TGG | + | chr5_2:17521804-17521823 | Msa0760880:CDS | 60.0% | |
TGGGGTTGTTACTGTGGCGG+TGG | + | chr5_2:17521795-17521814 | Msa0760880:CDS | 60.0% | |
TACTGTGGCGGTGGCTGAGA+TGG | + | chr5_2:17521804-17521823 | Msa0760880:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 17519942 | 17521837 | 17519942 | ID=Msa0760880;Name=Msa0760880 |
chr5_2 | mRNA | 17519942 | 17521837 | 17519942 | ID=Msa0760880-mRNA-1;Parent=Msa0760880;Name=Msa0760880-mRNA-1;_AED=0.25;_eAED=0.25;_QI=355|0.5|0.33|0.66|0.5|0.33|3|0|90 |
chr5_2 | exon | 17519942 | 17520219 | 17519942 | ID=Msa0760880-mRNA-1:exon:7761;Parent=Msa0760880-mRNA-1 |
chr5_2 | exon | 17520787 | 17521028 | 17520787 | ID=Msa0760880-mRNA-1:exon:7762;Parent=Msa0760880-mRNA-1 |
chr5_2 | exon | 17521730 | 17521837 | 17521730 | ID=Msa0760880-mRNA-1:exon:7763;Parent=Msa0760880-mRNA-1 |
chr5_2 | five_prime_UTR | 17519942 | 17520219 | 17519942 | ID=Msa0760880-mRNA-1:five_prime_utr;Parent=Msa0760880-mRNA-1 |
chr5_2 | five_prime_UTR | 17520787 | 17520863 | 17520787 | ID=Msa0760880-mRNA-1:five_prime_utr;Parent=Msa0760880-mRNA-1 |
chr5_2 | CDS | 17520864 | 17521028 | 17520864 | ID=Msa0760880-mRNA-1:cds;Parent=Msa0760880-mRNA-1 |
chr5_2 | CDS | 17521730 | 17521837 | 17521730 | ID=Msa0760880-mRNA-1:cds;Parent=Msa0760880-mRNA-1 |
Gene Sequence |
Protein sequence |