Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840060 | XP_003612558.1 | 96.995 | 366 | 11 | 0 | 1 | 366 | 1 | 366 | 0.0 | 737 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840060 | sp|Q8VWF1|SH3P2_ARATH | 48.138 | 376 | 175 | 6 | 1 | 366 | 1 | 366 | 2.11e-112 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840060 | G7K5G6 | 96.995 | 366 | 11 | 0 | 1 | 366 | 1 | 366 | 0.0 | 737 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024400 | Msa0840060 | 0.815201 | 1.043540e-51 | -8.615850e-47 |
| Msa0604290 | Msa0840060 | 0.824971 | 6.042931e-54 | -8.615850e-47 |
| Msa0617170 | Msa0840060 | 0.815179 | 1.055777e-51 | -8.615850e-47 |
| Msa0642970 | Msa0840060 | 0.809006 | 2.342180e-50 | -8.615850e-47 |
| Msa0655920 | Msa0840060 | 0.800313 | 1.527938e-48 | -8.615850e-47 |
| Msa0672550 | Msa0840060 | 0.817464 | 3.253360e-52 | -8.615850e-47 |
| Msa0682680 | Msa0840060 | 0.806720 | 7.171313e-50 | -8.615850e-47 |
| Msa0709120 | Msa0840060 | 0.800758 | 1.239954e-48 | -8.615850e-47 |
| Msa0712560 | Msa0840060 | 0.802011 | 6.868405e-49 | -8.615850e-47 |
| Msa0735550 | Msa0840060 | 0.828909 | 6.916383e-55 | -8.615850e-47 |
| Msa0741440 | Msa0840060 | 0.806710 | 7.208750e-50 | -8.615850e-47 |
| Msa0760180 | Msa0840060 | 0.856438 | 3.216361e-62 | -8.615850e-47 |
| Msa0760250 | Msa0840060 | 0.852327 | 4.964672e-61 | -8.615850e-47 |
| Msa0784480 | Msa0840060 | 0.812667 | 3.777520e-51 | -8.615850e-47 |
| Msa0786750 | Msa0840060 | 0.821717 | 3.479748e-53 | -8.615850e-47 |
| Msa0801670 | Msa0840060 | 0.827905 | 1.208429e-54 | -8.615850e-47 |
| Msa0811520 | Msa0840060 | 0.805598 | 1.235568e-49 | -8.615850e-47 |
| Msa0822500 | Msa0840060 | 0.846182 | 2.549801e-59 | -8.615850e-47 |
| Msa0830660 | Msa0840060 | 0.846709 | 1.831865e-59 | -8.615850e-47 |
| Msa0831110 | Msa0840060 | 0.811053 | 8.485209e-51 | -8.615850e-47 |
| Msa0840060 | Msa0844110 | 0.803277 | 3.763495e-49 | -8.615850e-47 |
| Msa0840060 | Msa0851730 | 0.813589 | 2.371025e-51 | -8.615850e-47 |
| Msa0840060 | Msa0855110 | 0.821208 | 4.562323e-53 | -8.615850e-47 |
| Msa0840060 | Msa0855870 | 0.806525 | 7.885178e-50 | -8.615850e-47 |
| Msa0840060 | Msa0892640 | 0.807861 | 4.110488e-50 | -8.615850e-47 |
| Msa0840060 | Msa0894710 | 0.811665 | 6.248748e-51 | -8.615850e-47 |
| Msa0840060 | Msa0934140 | 0.806172 | 9.357016e-50 | -8.615850e-47 |
| Msa0840060 | Msa0944200 | 0.824558 | 7.562130e-54 | -8.615850e-47 |
| Msa0840060 | Msa1034500 | 0.815871 | 7.401868e-52 | -8.615850e-47 |
| Msa0840060 | Msa1037520 | 0.815275 | 1.004930e-51 | -8.615850e-47 |
| Msa0840060 | Msa1089450 | 0.820992 | 5.116223e-53 | -8.615850e-47 |
| Msa0840060 | Msa1130400 | 0.802505 | 5.433709e-49 | -8.615850e-47 |
| Msa0840060 | Msa1175200 | 0.802869 | 4.570730e-49 | -8.615850e-47 |
| Msa0840060 | Msa1178580 | 0.804135 | 2.497809e-49 | -8.615850e-47 |
| Msa0840060 | Msa1184690 | 0.811857 | 5.676122e-51 | -8.615850e-47 |
| Msa0840060 | Msa1211230 | -0.808826 | 2.558720e-50 | -8.615850e-47 |
| Msa0840060 | Msa1225860 | -0.808575 | 2.895464e-50 | -8.615850e-47 |
| Msa0840060 | Msa1234620 | 0.801131 | 1.040800e-48 | -8.615850e-47 |
| Msa0840060 | Msa1236110 | -0.806780 | 6.967751e-50 | -8.615850e-47 |
| Msa0840060 | Msa1243870 | 0.807095 | 5.976386e-50 | -8.615850e-47 |
| Msa0840060 | Msa1271130 | 0.822430 | 2.379339e-53 | -8.615850e-47 |
| Msa0840060 | Msa1276150 | 0.805197 | 1.499513e-49 | -8.615850e-47 |
| Msa0840060 | Msa1293520 | 0.819612 | 1.060218e-52 | -8.615850e-47 |
| Msa0840060 | Msa1307180 | 0.815634 | 8.361120e-52 | -8.615850e-47 |
| Msa0840060 | Msa1316360 | 0.808002 | 3.836054e-50 | -8.615850e-47 |
| Msa0840060 | Msa1327640 | 0.804035 | 2.620524e-49 | -8.615850e-47 |
| Msa0840060 | Msa1331050 | -0.813793 | 2.138731e-51 | -8.615850e-47 |
| Msa0840060 | Msa1337480 | 0.808353 | 3.228663e-50 | -8.615850e-47 |
| Msa0840060 | Msa1368360 | 0.803930 | 2.754982e-49 | -8.615850e-47 |
| Msa0840060 | Msa1407190 | 0.815145 | 1.074266e-51 | -8.615850e-47 |
| Msa0840060 | Msa1412130 | 0.809975 | 1.450297e-50 | -8.615850e-47 |
| Msa0840060 | Msa1418240 | 0.813770 | 2.162774e-51 | -8.615850e-47 |
| Msa0840060 | Msa1432130 | 0.820511 | 6.600123e-53 | -8.615850e-47 |
| Msa0840060 | Msa1446080 | 0.812857 | 3.432260e-51 | -8.615850e-47 |
| Msa0840060 | Msa1458090 | 0.816927 | 4.296706e-52 | -8.615850e-47 |
| Msa0840060 | Msa1465570 | 0.800539 | 1.374366e-48 | -8.615850e-47 |
| Msa0139670 | Msa0840060 | 0.803337 | 3.657650e-49 | -8.615850e-47 |
| Msa0163510 | Msa0840060 | 0.809557 | 1.783724e-50 | -8.615850e-47 |
| Msa0167980 | Msa0840060 | 0.811153 | 8.074114e-51 | -8.615850e-47 |
| Msa0189040 | Msa0840060 | 0.802745 | 4.849905e-49 | -8.615850e-47 |
| Msa0204960 | Msa0840060 | 0.833755 | 4.443644e-56 | -8.615850e-47 |
| Msa0217670 | Msa0840060 | 0.804431 | 2.167300e-49 | -8.615850e-47 |
| Msa0223340 | Msa0840060 | 0.827785 | 1.291678e-54 | -8.615850e-47 |
| Msa0233370 | Msa0840060 | 0.801777 | 7.673221e-49 | -8.615850e-47 |
| Msa0367870 | Msa0840060 | 0.811831 | 5.751073e-51 | -8.615850e-47 |
| Msa0382370 | Msa0840060 | 0.837271 | 5.734741e-57 | -8.615850e-47 |
| Msa0385500 | Msa0840060 | 0.835873 | 1.302026e-56 | -8.615850e-47 |
| Msa0395980 | Msa0840060 | 0.800223 | 1.593987e-48 | -8.615850e-47 |
| Msa0432160 | Msa0840060 | 0.828269 | 9.875739e-55 | -8.615850e-47 |
| Msa0437020 | Msa0840060 | 0.800756 | 1.241056e-48 | -8.615850e-47 |
| Msa0450400 | Msa0840060 | -0.849707 | 2.721216e-60 | -8.615850e-47 |
| Msa0455760 | Msa0840060 | 0.817053 | 4.025751e-52 | -8.615850e-47 |
| Msa0473330 | Msa0840060 | 0.816272 | 6.023701e-52 | -8.615850e-47 |
| Msa0476680 | Msa0840060 | 0.832541 | 8.912493e-56 | -8.615850e-47 |
| Msa0481970 | Msa0840060 | 0.819611 | 1.060333e-52 | -8.615850e-47 |
| Msa0240900 | Msa0840060 | 0.805815 | 1.112359e-49 | -8.615850e-47 |
| Msa0241140 | Msa0840060 | 0.810761 | 9.812743e-51 | -8.615850e-47 |
| Msa0241830 | Msa0840060 | 0.800799 | 1.216688e-48 | -8.615850e-47 |
| Msa0244970 | Msa0840060 | 0.801705 | 7.938013e-49 | -8.615850e-47 |
| Msa0244980 | Msa0840060 | 0.817599 | 3.033630e-52 | -8.615850e-47 |
| Msa0257490 | Msa0840060 | 0.827135 | 1.848797e-54 | -8.615850e-47 |
| Msa0281530 | Msa0840060 | 0.847262 | 1.292140e-59 | -8.615850e-47 |
| Msa0283420 | Msa0840060 | 0.808769 | 2.631941e-50 | -8.615850e-47 |
| Msa0296790 | Msa0840060 | 0.853022 | 3.143954e-61 | -8.615850e-47 |
| Msa0317970 | Msa0840060 | 0.827840 | 1.252655e-54 | -8.615850e-47 |
| Msa0320590 | Msa0840060 | 0.827985 | 1.155677e-54 | -8.615850e-47 |
| Msa0321690 | Msa0840060 | 0.814392 | 1.577078e-51 | -8.615850e-47 |
| Msa0339910 | Msa0840060 | 0.819569 | 1.084347e-52 | -8.615850e-47 |
| Msa0363790 | Msa0840060 | 0.839902 | 1.200188e-57 | -8.615850e-47 |
| Msa0485240 | Msa0840060 | 0.819916 | 9.034419e-53 | -8.615850e-47 |
| Msa0486690 | Msa0840060 | 0.806372 | 8.493450e-50 | -8.615850e-47 |
| Msa0491000 | Msa0840060 | 0.812070 | 5.102008e-51 | -8.615850e-47 |
| Msa0517640 | Msa0840060 | 0.813896 | 2.029786e-51 | -8.615850e-47 |
| Msa0521010 | Msa0840060 | 0.829916 | 3.937488e-55 | -8.615850e-47 |
| Msa0544160 | Msa0840060 | 0.803464 | 3.443301e-49 | -8.615850e-47 |
| Msa0547160 | Msa0840060 | 0.824582 | 7.467196e-54 | -8.615850e-47 |
| Msa0583360 | Msa0840060 | -0.809198 | 2.129819e-50 | -8.615850e-47 |
| Msa0600080 | Msa0840060 | 0.820036 | 8.480228e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840060 | MtrunA17_Chr5g0408971 | 96.995 | 366 | 11 | 0 | 1 | 366 | 1 | 366 | 0.0 | 737 |
| Msa0840060 | MtrunA17_Chr3g0145091 | 49.604 | 379 | 168 | 7 | 1 | 366 | 1 | 369 | 7.07e-112 | 331 |
| Msa0840060 | MtrunA17_Chr4g0035851 | 47.906 | 382 | 171 | 8 | 1 | 366 | 1 | 370 | 2.24e-104 | 311 |
| Msa0840060 | MtrunA17_Chr8g0380121 | 38.692 | 367 | 198 | 5 | 1 | 364 | 1 | 343 | 2.24e-87 | 267 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840060 | AT4G34660.1 | 48.138 | 376 | 175 | 6 | 1 | 366 | 1 | 366 | 2.14e-113 | 335 |
| Msa0840060 | AT4G34660.2 | 46.277 | 376 | 159 | 7 | 1 | 366 | 1 | 343 | 1.63e-104 | 311 |
| Msa0840060 | AT4G34660.3 | 44.809 | 366 | 151 | 2 | 1 | 366 | 1 | 315 | 2.45e-101 | 302 |
| Msa0840060 | AT1G31440.1 | 51.171 | 299 | 134 | 3 | 1 | 289 | 1 | 297 | 4.19e-96 | 293 |
| Msa0840060 | AT1G31440.1 | 57.009 | 107 | 42 | 1 | 264 | 366 | 327 | 433 | 3.76e-33 | 128 |
| Msa0840060 | AT4G18060.1 | 41.047 | 363 | 190 | 5 | 1 | 360 | 1 | 342 | 1.49e-95 | 289 |
| Msa0840060 | AT4G39020.1 | 45.055 | 91 | 49 | 1 | 276 | 366 | 78 | 167 | 1.16e-18 | 82.8 |
Find 104 sgRNAs with CRISPR-Local
Find 341 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCAATCACATGATATTA+TGG | 0.226560 | 5_4:-15630015 | None:intergenic |
| GGATTAACTTTCTCATTTGC+AGG | 0.288088 | 5_4:-15628862 | None:intergenic |
| GAGACTTTGCTTGGGATCTT+AGG | 0.291927 | 5_4:+15626373 | Msa0840060:CDS |
| GGTTGATTATGTTCCTCTTT+TGG | 0.303218 | 5_4:-15628841 | None:intergenic |
| CGGTAACTCATACGATATAT+TGG | 0.313275 | 5_4:+15626339 | Msa0840060:CDS |
| GCTAAGGACTGTTGTAAGTA+TGG | 0.317953 | 5_4:+15626259 | Msa0840060:CDS |
| ACAGACCATTCTATATAATA+TGG | 0.328812 | 5_4:-15630196 | None:intergenic |
| GCATAACTTTGATGTTATTC+CGG | 0.330937 | 5_4:-15629919 | None:intergenic |
| ACAAATAACAGGAGCTCCTT+TGG | 0.378574 | 5_4:+15627371 | Msa0840060:CDS |
| TTTGATTTGCTTAAGCCCTT+AGG | 0.379562 | 5_4:+15630135 | Msa0840060:three_prime_UTR |
| GCTTGGGATCTTAGGTGATC+AGG | 0.383065 | 5_4:+15626381 | Msa0840060:CDS |
| TATTCTCATAATCACGGATT+AGG | 0.386587 | 5_4:+15629980 | Msa0840060:three_prime_UTR |
| TGTTTATAACGAATGCCATT+TGG | 0.388959 | 5_4:-15628883 | None:intergenic |
| TAAGCCCTTAGGGTTATCTA+AGG | 0.400401 | 5_4:+15630146 | Msa0840060:three_prime_UTR |
| GTCAAGCTCGTGTCCGTGTC+TGG | 0.400581 | 5_4:+15624685 | Msa0840060:five_prime_UTR |
| CCACTGCGGGCACAAATAAC+AGG | 0.404350 | 5_4:+15627360 | Msa0840060:CDS |
| AAGTTTCTAACGGAAGAAAA+AGG | 0.404532 | 5_4:-15624805 | None:intergenic |
| GTTAGAAACTTCTCTCTCTC+TGG | 0.417559 | 5_4:+15624817 | Msa0840060:five_prime_UTR |
| GCAAGTGCTTCTCTTCAATT+CGG | 0.418266 | 5_4:+15626319 | Msa0840060:CDS |
| GGAGAATTCAATGGCAATGC+TGG | 0.418558 | 5_4:+15629841 | Msa0840060:CDS |
| TTGATTTGCTTAAGCCCTTA+GGG | 0.420745 | 5_4:+15630136 | Msa0840060:three_prime_UTR |
| TATAAACATAACACCCAAAT+GGG | 0.436203 | 5_4:+15628898 | Msa0840060:CDS |
| CGATTATGTTGTAGTCCGTC+AGG | 0.438244 | 5_4:+15629484 | Msa0840060:CDS |
| TTCTGCATTCTGAAGCCTCA+TGG | 0.443561 | 5_4:-15627592 | None:intergenic |
| TTATAAACATAACACCCAAA+TGG | 0.448386 | 5_4:+15628897 | Msa0840060:CDS |
| CATATCGTTCGGGGCGTTGA+AGG | 0.452090 | 5_4:+15626100 | Msa0840060:CDS |
| TTCTGTTAGTTCCAAGCAGA+TGG | 0.454303 | 5_4:+15626129 | Msa0840060:CDS |
| CCTTCAGCTTGAGCATCAAA+TGG | 0.458512 | 5_4:-15629440 | None:intergenic |
| AATGAGAAAGTTAATCCAAA+TGG | 0.467279 | 5_4:+15628868 | Msa0840060:CDS |
| ATCATTTCCACTGCCAAAAG+AGG | 0.468115 | 5_4:+15628828 | Msa0840060:CDS |
| CAGTCTATACTTAGACAGTT+GGG | 0.468435 | 5_4:+15625880 | Msa0840060:intron |
| ATACCATTGTAGAAAGGCTC+TGG | 0.470481 | 5_4:-15627713 | None:intergenic |
| AGTTCCAAGCAGATGGAGAT+AGG | 0.472353 | 5_4:+15626136 | Msa0840060:CDS |
| GGAAGCAAGCTAGTAGATTG+AGG | 0.473119 | 5_4:+15624998 | Msa0840060:CDS |
| AATGAAAGGGAGACTTTGCT+TGG | 0.475575 | 5_4:+15626364 | Msa0840060:CDS |
| AATGTCCATATTATATAGAA+TGG | 0.488035 | 5_4:+15630191 | Msa0840060:three_prime_UTR |
| TATTCCGGTATCTTGTTCGC+TGG | 0.489472 | 5_4:-15629904 | None:intergenic |
| GCAGTCTATACTTAGACAGT+TGG | 0.490454 | 5_4:+15625879 | Msa0840060:intron |
| GATCACTACCTGTTGTTGCT+TGG | 0.493492 | 5_4:-15625031 | None:intergenic |
| CCATTTGATGCTCAAGCTGA+AGG | 0.493578 | 5_4:+15629440 | Msa0840060:CDS |
| AAACTTCGTCAAGAAGTAGA+AGG | 0.493785 | 5_4:+15627426 | Msa0840060:CDS |
| GAGGCGTCGATCAAAGTTGA+GGG | 0.496376 | 5_4:+15627545 | Msa0840060:CDS |
| ACAAGTTGCCAAGCAACAAC+AGG | 0.498309 | 5_4:+15625023 | Msa0840060:CDS |
| AATTTCCAGGTTGCTGCCAA+TGG | 0.498806 | 5_4:+15629808 | Msa0840060:intron |
| GTCACCTATCTCCATCTGCT+TGG | 0.502296 | 5_4:-15626140 | None:intergenic |
| GACGAAGTTTGTCGTAGTTG+TGG | 0.502788 | 5_4:-15627413 | None:intergenic |
| TGAGCGGTTCATTGCTAAGT+TGG | 0.503839 | 5_4:-15625903 | None:intergenic |
| ACGATATATTGGAAAATGAA+AGG | 0.504543 | 5_4:+15626350 | Msa0840060:CDS |
| ACGAAGTTTGTCGTAGTTGT+GGG | 0.505034 | 5_4:-15627412 | None:intergenic |
| TTAGCTATACCATTGTAGAA+AGG | 0.507899 | 5_4:-15627719 | None:intergenic |
| TCGTCAAGAAGTAGAAGGCC+AGG | 0.512767 | 5_4:+15627431 | Msa0840060:CDS |
| ATGAAAGGGAGACTTTGCTT+GGG | 0.515856 | 5_4:+15626365 | Msa0840060:CDS |
| CTCTCTCTCTGGAAAGTCCC+AGG | 0.516957 | 5_4:+15624828 | Msa0840060:five_prime_UTR |
| CGATATATTGGAAAATGAAA+GGG | 0.517703 | 5_4:+15626351 | Msa0840060:CDS |
| AAATCTGCCTTGGTGGCACT+TGG | 0.518307 | 5_4:+15627633 | Msa0840060:CDS |
| GAAGCAAGCTAGTAGATTGA+GGG | 0.520089 | 5_4:+15624999 | Msa0840060:CDS |
| TCCAGGTTGCTGCCAATGGA+TGG | 0.529779 | 5_4:+15629812 | Msa0840060:intron |
| ACTTAGCAATGAACCGCTCA+TGG | 0.537092 | 5_4:+15625906 | Msa0840060:CDS |
| TTGAAGAGAAGCACTTGCAA+GGG | 0.540806 | 5_4:-15626314 | None:intergenic |
| CTCTGCTTATGTACAGAGAC+AGG | 0.541764 | 5_4:+15629873 | Msa0840060:CDS |
| TGCTGCTATGTCGTCAGTTG+AGG | 0.543649 | 5_4:+15627668 | Msa0840060:CDS |
| CTAAGGACTGTTGTAAGTAT+GGG | 0.544371 | 5_4:+15626260 | Msa0840060:CDS |
| GTATACTTCAGTGAGGAAGT+TGG | 0.546550 | 5_4:+15626237 | Msa0840060:intron |
| CCTAATCAAAAGACCAATGT+TGG | 0.550105 | 5_4:-15629941 | None:intergenic |
| GAAAGAGCATAAATCTGCCT+TGG | 0.555036 | 5_4:+15627623 | Msa0840060:CDS |
| ATTGAAGAGAAGCACTTGCA+AGG | 0.556652 | 5_4:-15626315 | None:intergenic |
| AAGTTCCTTAGATAACCCTA+AGG | 0.557549 | 5_4:-15630151 | None:intergenic |
| ATAGATCTCTGAGCCACTGC+GGG | 0.558173 | 5_4:+15627347 | Msa0840060:intron |
| TTCAGTGAGGAAGTTGGCTA+AGG | 0.558875 | 5_4:+15626243 | Msa0840060:intron |
| TTCTCCTTCAGACCATCCAT+TGG | 0.561878 | 5_4:-15629824 | None:intergenic |
| CATTTGATGCTCAAGCTGAA+GGG | 0.565005 | 5_4:+15629441 | Msa0840060:CDS |
| TGTCGTAGTTGTGGGTGAGA+TGG | 0.569642 | 5_4:-15627404 | None:intergenic |
| TGAGGCGTCGATCAAAGTTG+AGG | 0.570936 | 5_4:+15627544 | Msa0840060:CDS |
| CTAGAATAACAAGGGCATGC+CGG | 0.575931 | 5_4:-15628588 | None:intergenic |
| CATCAAAGTTATGCCAACAT+TGG | 0.578617 | 5_4:+15629928 | Msa0840060:three_prime_UTR |
| TTTCAGCGGCATATCGTTCG+GGG | 0.580469 | 5_4:+15626091 | Msa0840060:CDS |
| TGGTCTGAAGGAGAATTCAA+TGG | 0.582228 | 5_4:+15629832 | Msa0840060:CDS |
| AGAGAGAGAGAAGTTTCTAA+CGG | 0.583001 | 5_4:-15624815 | None:intergenic |
| AATTCAATGGCAATGCTGGA+TGG | 0.583292 | 5_4:+15629845 | Msa0840060:CDS |
| ATTTGATGCTCAAGCTGAAG+GGG | 0.584498 | 5_4:+15629442 | Msa0840060:CDS |
| CACTTCTACAAAGACTGCTA+AGG | 0.584795 | 5_4:+15625975 | Msa0840060:CDS |
| AGTACCAGCGAACAAGATAC+CGG | 0.589399 | 5_4:+15629900 | Msa0840060:CDS |
| ACTGTATATTCTCATAATCA+CGG | 0.593578 | 5_4:+15629974 | Msa0840060:three_prime_UTR |
| AGAGCATAAATCTGCCTTGG+TGG | 0.594915 | 5_4:+15627626 | Msa0840060:CDS |
| GCTGCCAATGGATGGTCTGA+AGG | 0.596789 | 5_4:+15629820 | Msa0840060:CDS |
| TCTAGATAAACTACATGCTG+AGG | 0.597051 | 5_4:+15628606 | Msa0840060:CDS |
| TCTCCAGAGCCTTTCTACAA+TGG | 0.606321 | 5_4:+15627710 | Msa0840060:CDS |
| TTCTCTACCAAGTGCCACCA+AGG | 0.607684 | 5_4:-15627640 | None:intergenic |
| CCTGTTATTTGTGCCCGCAG+TGG | 0.612434 | 5_4:-15627360 | None:intergenic |
| TGTAATTCTAAATGAAAACA+TGG | 0.617627 | 5_4:+15630216 | Msa0840060:three_prime_UTR |
| AGATGGCGTGCATCTTCCAA+AGG | 0.624501 | 5_4:-15627387 | None:intergenic |
| CTGTCTCTGTACATAAGCAG+AGG | 0.628802 | 5_4:-15629872 | None:intergenic |
| AGTTCCTTAGATAACCCTAA+GGG | 0.632998 | 5_4:-15630150 | None:intergenic |
| TTTGAGAGTAGCACCAGACA+CGG | 0.640529 | 5_4:-15624698 | None:intergenic |
| TGAAGAGAAGCACTTGCAAG+GGG | 0.649136 | 5_4:-15626313 | None:intergenic |
| TCAGATTCATCAGCCATGAG+CGG | 0.654677 | 5_4:-15625919 | None:intergenic |
| GTAGTTTATCTAGAATAACA+AGG | 0.660690 | 5_4:-15628597 | None:intergenic |
| TGTCTCTGTACATAAGCAGA+GGG | 0.668894 | 5_4:-15629871 | None:intergenic |
| GGAAATGATGTAGAGTCTTG+TGG | 0.677018 | 5_4:-15628814 | None:intergenic |
| TAGTTTATCTAGAATAACAA+GGG | 0.682515 | 5_4:-15628596 | None:intergenic |
| TTTCTGCAGAGAGTTCCATG+AGG | 0.703430 | 5_4:+15627577 | Msa0840060:CDS |
| TATAGATCTCTGAGCCACTG+CGG | 0.729508 | 5_4:+15627346 | Msa0840060:intron |
| GAAGAGAAGCACTTGCAAGG+GGG | 0.737031 | 5_4:-15626312 | None:intergenic |
| GGGACTGAGAATGACAACCA+AGG | 0.745093 | 5_4:+15626280 | Msa0840060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAATCAAAATCAATTT+TGG | + | chr5_4:15625382-15625401 | Msa0840060:intron | 10.0% |
| !! | AATATATTAACAAAGTAAAA+TGG | - | chr5_4:15628009-15628028 | None:intergenic | 10.0% |
| !!! | AAATTCATAATTTTTTAATG+AGG | + | chr5_4:15628397-15628416 | Msa0840060:intron | 10.0% |
| !!! | ATTTTTTTTTTTTTTGTTTG+GGG | - | chr5_4:15628509-15628528 | None:intergenic | 10.0% |
| !!! | ATTTTATTGCTTATATAAAT+TGG | - | chr5_4:15629178-15629197 | None:intergenic | 10.0% |
| !! | AATATCATTATTAATATTTG+CGG | + | chr5_4:15629706-15629725 | Msa0840060:intron | 10.0% |
| !!! | CTGTTTTTATTGTAAAAAAA+TGG | + | chr5_4:15624966-15624985 | Msa0840060:exon | 15.0% |
| !!! | AAGAATTGATTTTGATATTT+TGG | + | chr5_4:15625215-15625234 | Msa0840060:intron | 15.0% |
| !!! | AGAATTGATTTTGATATTTT+GGG | + | chr5_4:15625216-15625235 | Msa0840060:intron | 15.0% |
| !!! | GATTTTGATTTAATTGATTT+TGG | - | chr5_4:15625377-15625396 | None:intergenic | 15.0% |
| !!! | TGATTCTATAAAATTGATTT+GGG | - | chr5_4:15625655-15625674 | None:intergenic | 15.0% |
| !! | TTGATTCTATAAAATTGATT+TGG | - | chr5_4:15625656-15625675 | None:intergenic | 15.0% |
| !!! | TGATAACATCATATATTTTA+CGG | - | chr5_4:15626906-15626925 | None:intergenic | 15.0% |
| !!! | TATTGACTTTGATAAATTAA+GGG | + | chr5_4:15627143-15627162 | Msa0840060:intron | 15.0% |
| !! | TATCTTATTAAATGTTTGTT+TGG | + | chr5_4:15628420-15628439 | Msa0840060:intron | 15.0% |
| !!! | ATTTTTCAGTAGTACTATTT+AGG | + | chr5_4:15625076-15625095 | Msa0840060:intron | 20.0% |
| !!! | ACAATTGATTTTGATATGTT+TGG | + | chr5_4:15625480-15625499 | Msa0840060:intron | 20.0% |
| !! | CTTAATAACTAACTGATAAA+TGG | - | chr5_4:15626019-15626038 | None:intergenic | 20.0% |
| !! | CAATATATTGGAAAATGAAA+GGG | - | chr5_4:15626873-15626892 | None:intergenic | 20.0% |
| !!! | CTATTGACTTTGATAAATTA+AGG | + | chr5_4:15627142-15627161 | Msa0840060:intron | 20.0% |
| !!! | ATATACTGTTGATTTTGTAA+AGG | + | chr5_4:15627224-15627243 | Msa0840060:intron | 20.0% |
| !!! | TATACTGTTGATTTTGTAAA+GGG | + | chr5_4:15627225-15627244 | Msa0840060:intron | 20.0% |
| !! | TTGAAGATGTAAATATTTGT+TGG | + | chr5_4:15628099-15628118 | Msa0840060:intron | 20.0% |
| !!! | TAGTTTATCTAGAATAACAA+GGG | - | chr5_4:15628599-15628618 | None:intergenic | 20.0% |
| !! | TTCCAATTTGAAAGAATTAT+TGG | - | chr5_4:15628647-15628666 | None:intergenic | 20.0% |
| !!! | TTATTCAAATGATTTAGCTT+TGG | + | chr5_4:15629035-15629054 | Msa0840060:intron | 20.0% |
| !! | AGATCAACATTAAAAAGAAA+TGG | - | chr5_4:15629104-15629123 | None:intergenic | 20.0% |
| !! | TATATAAAATGAACTTCTCA+TGG | - | chr5_4:15629263-15629282 | None:intergenic | 20.0% |
| !! | TCATAAAATAAGACAAATCT+TGG | + | chr5_4:15629292-15629311 | Msa0840060:intron | 20.0% |
| !!! | TTGAACTTCTTAAGTAATTT+TGG | + | chr5_4:15629540-15629559 | Msa0840060:intron | 20.0% |
| !!! | TTGCATTTTTATTTTCCTTT+TGG | + | chr5_4:15629779-15629798 | Msa0840060:intron | 20.0% |
| !! | AATGTCCATATTATATAGAA+TGG | + | chr5_4:15630191-15630210 | Msa0840060:three_prime_UTR | 20.0% |
| !! | TGTAATTCTAAATGAAAACA+TGG | + | chr5_4:15630216-15630235 | Msa0840060:three_prime_UTR | 20.0% |
| !! | GGAAGAAAAAGGTATAATAA+TGG | - | chr5_4:15624797-15624816 | None:intergenic | 25.0% |
| ! | AAAAGTAAGAGAACAAATGA+AGG | - | chr5_4:15624880-15624899 | None:intergenic | 25.0% |
| !!! | ACAGTAACTTTGTTTTTGTT+TGG | - | chr5_4:15624950-15624969 | None:intergenic | 25.0% |
| ! | GTAAAAAAATGGATGCTATA+AGG | + | chr5_4:15624977-15624996 | Msa0840060:exon | 25.0% |
| ! | AAACAAGCTTATTGTATGTT+TGG | + | chr5_4:15625149-15625168 | Msa0840060:intron | 25.0% |
| ! | TTACTTCATGATTGAACTTA+TGG | + | chr5_4:15625732-15625751 | Msa0840060:intron | 25.0% |
| ! | GCATAAACAAAACTAATGAT+AGG | - | chr5_4:15626184-15626203 | None:intergenic | 25.0% |
| !!! | TTAGTTTTGTTTATGCTTCA+AGG | + | chr5_4:15626188-15626207 | Msa0840060:intron | 25.0% |
| ! | ACAAAACATCAATCAATTAC+TGG | - | chr5_4:15626214-15626233 | None:intergenic | 25.0% |
| ! | ACGATATATTGGAAAATGAA+AGG | + | chr5_4:15626350-15626369 | Msa0840060:CDS | 25.0% |
| ! | CGATATATTGGAAAATGAAA+GGG | + | chr5_4:15626351-15626370 | Msa0840060:CDS | 25.0% |
| ! | AACCATTAGAAAAGATTTAG+AGG | - | chr5_4:15626634-15626653 | None:intergenic | 25.0% |
| ! | AACCATTAGAAAAGATTTAG+AGG | + | chr5_4:15626634-15626653 | Msa0840060:intron | 25.0% |
| ! | GCAATATATTGGAAAATGAA+AGG | - | chr5_4:15626874-15626893 | None:intergenic | 25.0% |
| ! | ATGTGAATGTTATTGTTGAT+TGG | - | chr5_4:15627063-15627082 | None:intergenic | 25.0% |
| ! | CTTATTTCATATCAAGCAAA+AGG | - | chr5_4:15627103-15627122 | None:intergenic | 25.0% |
| !! | ATGCAAATGACTTTAAAAGA+CGG | - | chr5_4:15627261-15627280 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGTTTGGGGAA+GGG | - | chr5_4:15628504-15628523 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTGTTTGGGGA+AGG | - | chr5_4:15628505-15628524 | None:intergenic | 25.0% |
| !! | GTAGTTTATCTAGAATAACA+AGG | - | chr5_4:15628600-15628619 | None:intergenic | 25.0% |
| ! | CAATTTGAAAGAATTATTGG+TGG | - | chr5_4:15628644-15628663 | None:intergenic | 25.0% |
| ! | CACCAATAATTCTTTCAAAT+TGG | + | chr5_4:15628642-15628661 | Msa0840060:intron | 25.0% |
| ! | AATGAGAAAGTTAATCCAAA+TGG | + | chr5_4:15628868-15628887 | Msa0840060:CDS | 25.0% |
| ! | TTATAAACATAACACCCAAA+TGG | + | chr5_4:15628897-15628916 | Msa0840060:CDS | 25.0% |
| ! | TATAAACATAACACCCAAAT+GGG | + | chr5_4:15628898-15628917 | Msa0840060:CDS | 25.0% |
| ! | ATATGGTTGTAATGTAATGT+AGG | - | chr5_4:15628984-15629003 | None:intergenic | 25.0% |
| ! | ATGTAGATAAAATATTGCAC+TGG | - | chr5_4:15629372-15629391 | None:intergenic | 25.0% |
| ! | AAATCAACAGTAACTCTATT+TGG | - | chr5_4:15629618-15629637 | None:intergenic | 25.0% |
| ! | TTATTAATATTTGCGGAAGT+TGG | + | chr5_4:15629713-15629732 | Msa0840060:intron | 25.0% |
| !!! | CATTTTTATTTTCCTTTTGG+TGG | + | chr5_4:15629782-15629801 | Msa0840060:intron | 25.0% |
| ! | ACTGTATATTCTCATAATCA+CGG | + | chr5_4:15629974-15629993 | Msa0840060:three_prime_UTR | 25.0% |
| ! | ATTGCAATCACATGATATTA+TGG | - | chr5_4:15630018-15630037 | None:intergenic | 25.0% |
| !!! | CATGTGATTGCAATTTTTTT+TGG | + | chr5_4:15630024-15630043 | Msa0840060:three_prime_UTR | 25.0% |
| !!! | TGATTGCAATTTTTTTTGGA+TGG | + | chr5_4:15630028-15630047 | Msa0840060:three_prime_UTR | 25.0% |
| ! | ACAGACCATTCTATATAATA+TGG | - | chr5_4:15630199-15630218 | None:intergenic | 25.0% |
| AAGTTTCTAACGGAAGAAAA+AGG | - | chr5_4:15624808-15624827 | None:intergenic | 30.0% | |
| ACTAAGAATACCTTATACCT+GGG | - | chr5_4:15624848-15624867 | None:intergenic | 30.0% | |
| AACTAAGAATACCTTATACC+TGG | - | chr5_4:15624849-15624868 | None:intergenic | 30.0% | |
| TGATCAGAAAAAGATTGAGT+TGG | - | chr5_4:15624912-15624931 | None:intergenic | 30.0% | |
| !! | TTTTTGTTTGGAGTAGAGAA+AGG | - | chr5_4:15624938-15624957 | None:intergenic | 30.0% |
| ! | AGGTAGTGATCATTTTATGT+GGG | + | chr5_4:15625043-15625062 | Msa0840060:intron | 30.0% |
| ! | TTTTGCCTCTTCAAAAAAAG+TGG | - | chr5_4:15625177-15625196 | None:intergenic | 30.0% |
| AAAAACACTAAGCAAGTGTT+CGG | - | chr5_4:15625419-15625438 | None:intergenic | 30.0% | |
| !!! | AACACTTGCTTAGTGTTTTT+TGG | + | chr5_4:15625419-15625438 | Msa0840060:intron | 30.0% |
| ! | CAATTTTGTCTCTTCCAAAA+TGG | - | chr5_4:15625447-15625466 | None:intergenic | 30.0% |
| !! | CATTTTGGAAGAGACAAAAT+TGG | + | chr5_4:15625445-15625464 | Msa0840060:intron | 30.0% |
| AGGCTAAAAATCAATTCTAG+AGG | - | chr5_4:15625558-15625577 | None:intergenic | 30.0% | |
| !! | TAAGTTTAGAGAGCTTTGTT+TGG | + | chr5_4:15626035-15626054 | Msa0840060:intron | 30.0% |
| CAAAACTAATGATAGGCAAA+AGG | - | chr5_4:15626177-15626196 | None:intergenic | 30.0% | |
| !! | TTGTTTTGTATACTTCAGTG+AGG | + | chr5_4:15626230-15626249 | Msa0840060:intron | 30.0% |
| TCTTTGATAGAACATTATGG+CGG | - | chr5_4:15626681-15626700 | None:intergenic | 30.0% | |
| TGGTCTTTGATAGAACATTA+TGG | - | chr5_4:15626678-15626697 | None:intergenic | 30.0% | |
| GTTCTATCAAAGACCATATT+TGG | + | chr5_4:15626550-15626569 | Msa0840060:intron | 30.0% | |
| ! | GACCTCTAAATCTTTTCTAA+TGG | + | chr5_4:15626585-15626604 | Msa0840060:intron | 30.0% |
| ! | GACCTCTAAATCTTTTCTAA+TGG | - | chr5_4:15626585-15626604 | None:intergenic | 30.0% |
| GTTCTATCAAAGACCATATT+TGG | - | chr5_4:15626550-15626569 | None:intergenic | 30.0% | |
| TGGTCTTTGATAGAACATTA+TGG | + | chr5_4:15626678-15626697 | Msa0840060:intron | 30.0% | |
| TCTTTGATAGAACATTATGG+CGG | + | chr5_4:15626681-15626700 | Msa0840060:intron | 30.0% | |
| GGTAATGTGATGCAATATAT+TGG | - | chr5_4:15626885-15626904 | None:intergenic | 30.0% | |
| ! | CTATCTTGTGGCTATAATTT+TGG | + | chr5_4:15626979-15626998 | Msa0840060:intron | 30.0% |
| ATCTTAGATATCTTCTCATC+AGG | + | chr5_4:15627509-15627528 | Msa0840060:intron | 30.0% | |
| TTAGCTATACCATTGTAGAA+AGG | - | chr5_4:15627722-15627741 | None:intergenic | 30.0% | |
| !! | TTTGTTTTCTTGTTTGTCAC+TGG | + | chr5_4:15628131-15628150 | Msa0840060:intron | 30.0% |
| TCTCTTCTTGAATCTTCATT+AGG | - | chr5_4:15628168-15628187 | None:intergenic | 30.0% | |
| TACTTGAAATGATAGACTGT+AGG | + | chr5_4:15628301-15628320 | Msa0840060:intron | 30.0% | |
| ! | TGATCAATTTTATGTAGCCA+TGG | + | chr5_4:15628351-15628370 | Msa0840060:intron | 30.0% |
| TGAAAAATATTGTGAGACCA+TGG | - | chr5_4:15628371-15628390 | None:intergenic | 30.0% | |
| GTACAATAGATACAAGAACA+AGG | - | chr5_4:15628679-15628698 | None:intergenic | 30.0% | |
| CTTGTATCTATTGTACATGT+TGG | + | chr5_4:15628683-15628702 | Msa0840060:intron | 30.0% | |
| TGTTTATAACGAATGCCATT+TGG | - | chr5_4:15628886-15628905 | None:intergenic | 30.0% | |
| ! | AAAAAAGTATGTGCCCATTT+GGG | - | chr5_4:15628914-15628933 | None:intergenic | 30.0% |
| ATCTTCAAAGAAATACCTGA+CGG | - | chr5_4:15629502-15629521 | None:intergenic | 30.0% | |
| !!! | TTCTTTGAAGATTTTCGAGT+CGG | + | chr5_4:15629510-15629529 | Msa0840060:intron | 30.0% |
| GCATAACTTTGATGTTATTC+CGG | - | chr5_4:15629922-15629941 | None:intergenic | 30.0% | |
| TATTCTCATAATCACGGATT+AGG | + | chr5_4:15629980-15629999 | Msa0840060:three_prime_UTR | 30.0% | |
| !! | AAGGAACTTAGTTTTTGAGA+TGG | + | chr5_4:15630165-15630184 | Msa0840060:three_prime_UTR | 30.0% |
| AGAGAGAGAGAAGTTTCTAA+CGG | - | chr5_4:15624818-15624837 | None:intergenic | 35.0% | |
| ! | CAGGTAGTGATCATTTTATG+TGG | + | chr5_4:15625042-15625061 | Msa0840060:intron | 35.0% |
| !!! | TGGTTCCACTTTTTTTGAAG+AGG | + | chr5_4:15625169-15625188 | Msa0840060:intron | 35.0% |
| AGAGGCAAAATTGATCTTAG+AGG | + | chr5_4:15625187-15625206 | Msa0840060:intron | 35.0% | |
| !!! | AGTGTTTTTTGGTGCCATTT+TGG | + | chr5_4:15625430-15625449 | Msa0840060:intron | 35.0% |
| GGAAGAGACAAAATTGGTTA+TGG | + | chr5_4:15625451-15625470 | Msa0840060:intron | 35.0% | |
| ! | TGAGTTGAACAATAAAGTCG+AGG | - | chr5_4:15625578-15625597 | None:intergenic | 35.0% |
| ! | TGGTTCTGCGTTGATAAAAA+TGG | - | chr5_4:15625691-15625710 | None:intergenic | 35.0% |
| CATGATTGAACTTATGGTGT+CGG | + | chr5_4:15625738-15625757 | Msa0840060:intron | 35.0% | |
| GTGAACAATTCACAAGTCTA+AGG | - | chr5_4:15625772-15625791 | None:intergenic | 35.0% | |
| CAGTCTATACTTAGACAGTT+GGG | + | chr5_4:15625880-15625899 | Msa0840060:intron | 35.0% | |
| AAATGCTGTAAACGTCACAT+TGG | - | chr5_4:15626073-15626092 | None:intergenic | 35.0% | |
| CTAAGGACTGTTGTAAGTAT+GGG | + | chr5_4:15626260-15626279 | Msa0840060:CDS | 35.0% | |
| CGGTAACTCATACGATATAT+TGG | + | chr5_4:15626339-15626358 | Msa0840060:CDS | 35.0% | |
| ! | TAGGTGATCAGGTAATCTTT+TGG | + | chr5_4:15626392-15626411 | Msa0840060:intron | 35.0% |
| ! | AGGTGATCAGGTAATCTTTT+GGG | + | chr5_4:15626393-15626412 | Msa0840060:intron | 35.0% |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr5_4:15626658-15626677 | None:intergenic | 35.0% |
| AGATTTAGAGGTCAATGAGT+TGG | - | chr5_4:15626646-15626665 | None:intergenic | 35.0% | |
| AGATTTAGAGGTCAATGAGT+TGG | + | chr5_4:15626646-15626665 | Msa0840060:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr5_4:15626658-15626677 | Msa0840060:intron | 35.0% |
| ! | AGGTGATCAGGTAATCTTTT+GGG | - | chr5_4:15626393-15626412 | None:intergenic | 35.0% |
| ! | TAGGTGATCAGGTAATCTTT+TGG | - | chr5_4:15626392-15626411 | None:intergenic | 35.0% |
| TTGTGCCTAATCTGATTTAC+TGG | + | chr5_4:15626956-15626975 | Msa0840060:intron | 35.0% | |
| GATAGCCAGTAAATCAGATT+AGG | - | chr5_4:15626964-15626983 | None:intergenic | 35.0% | |
| TCAATAGTTCCAGAGAACTA+GGG | - | chr5_4:15627129-15627148 | None:intergenic | 35.0% | |
| !! | CACTTGTTAGTGCTACTTAA+TGG | + | chr5_4:15627173-15627192 | Msa0840060:intron | 35.0% |
| !! | TGTTAGTGCTACTTAATGGA+AGG | + | chr5_4:15627177-15627196 | Msa0840060:intron | 35.0% |
| ! | TAATGGAAGGCATAGTTCTT+CGG | + | chr5_4:15627190-15627209 | Msa0840060:intron | 35.0% |
| ! | CTTCTTTTTCCAGACAAGAA+TGG | + | chr5_4:15627297-15627316 | Msa0840060:intron | 35.0% |
| GGTGCTTCTAATTATGCTTT+AGG | + | chr5_4:15627318-15627337 | Msa0840060:intron | 35.0% | |
| AAACTTCGTCAAGAAGTAGA+AGG | + | chr5_4:15627426-15627445 | Msa0840060:CDS | 35.0% | |
| TGAACCAAGATTAACCTCAT+AGG | - | chr5_4:15627832-15627851 | None:intergenic | 35.0% | |
| TTAATCTTGGTTCAACTGAG+TGG | + | chr5_4:15627838-15627857 | Msa0840060:intron | 35.0% | |
| !!! | TGAGTGGAGTTTTTTACCTT+TGG | + | chr5_4:15627854-15627873 | Msa0840060:intron | 35.0% |
| AAGTCAAATCAGCAACCAAT+GGG | - | chr5_4:15627979-15627998 | None:intergenic | 35.0% | |
| AAAGTCAAATCAGCAACCAA+TGG | - | chr5_4:15627980-15627999 | None:intergenic | 35.0% | |
| AAATCTTCACGCTAAATGCA+GGG | + | chr5_4:15628272-15628291 | Msa0840060:intron | 35.0% | |
| TCTAGATAAACTACATGCTG+AGG | + | chr5_4:15628606-15628625 | Msa0840060:CDS | 35.0% | |
| TTGTAACCTGTACCTTTCAT+CGG | + | chr5_4:15628751-15628770 | Msa0840060:intron | 35.0% | |
| ! | GGTTGATTATGTTCCTCTTT+TGG | - | chr5_4:15628844-15628863 | None:intergenic | 35.0% |
| GGATTAACTTTCTCATTTGC+AGG | - | chr5_4:15628865-15628884 | None:intergenic | 35.0% | |
| ! | CAAAAAAGTATGTGCCCATT+TGG | - | chr5_4:15628915-15628934 | None:intergenic | 35.0% |
| ! | ATCCAGTTACCTCTTTTACA+TGG | + | chr5_4:15629210-15629229 | Msa0840060:intron | 35.0% |
| ! | TCCAGTTACCTCTTTTACAT+GGG | + | chr5_4:15629211-15629230 | Msa0840060:intron | 35.0% |
| ! | GACAAATCTTGGTGCAAAAA+AGG | + | chr5_4:15629303-15629322 | Msa0840060:intron | 35.0% |
| AAATGGATGTATGACCTACA+AGG | - | chr5_4:15629426-15629445 | None:intergenic | 35.0% | |
| !!! | AAGATTTTCGAGTCGGTATA+TGG | + | chr5_4:15629517-15629536 | Msa0840060:intron | 35.0% |
| TCAACAGTAACTCTATTTGG+TGG | - | chr5_4:15629615-15629634 | None:intergenic | 35.0% | |
| CATCAAAGTTATGCCAACAT+TGG | + | chr5_4:15629928-15629947 | Msa0840060:three_prime_UTR | 35.0% | |
| CCTAATCAAAAGACCAATGT+TGG | - | chr5_4:15629944-15629963 | None:intergenic | 35.0% | |
| !!! | CCAACATTGGTCTTTTGATT+AGG | + | chr5_4:15629941-15629960 | Msa0840060:three_prime_UTR | 35.0% |
| !!! | ATTGGTCTTTTGATTAGGTG+CGG | + | chr5_4:15629946-15629965 | Msa0840060:three_prime_UTR | 35.0% |
| !! | TTTGATTTGCTTAAGCCCTT+AGG | + | chr5_4:15630135-15630154 | Msa0840060:three_prime_UTR | 35.0% |
| !! | TTGATTTGCTTAAGCCCTTA+GGG | + | chr5_4:15630136-15630155 | Msa0840060:three_prime_UTR | 35.0% |
| AGTTCCTTAGATAACCCTAA+GGG | - | chr5_4:15630153-15630172 | None:intergenic | 35.0% | |
| AAGTTCCTTAGATAACCCTA+AGG | - | chr5_4:15630154-15630173 | None:intergenic | 35.0% | |
| GTTAGAAACTTCTCTCTCTC+TGG | + | chr5_4:15624817-15624836 | Msa0840060:five_prime_UTR | 40.0% | |
| GAAGCAAGCTAGTAGATTGA+GGG | + | chr5_4:15624999-15625018 | Msa0840060:CDS | 40.0% | |
| GCAGTCTATACTTAGACAGT+TGG | + | chr5_4:15625879-15625898 | Msa0840060:intron | 40.0% | |
| CACTTCTACAAAGACTGCTA+AGG | + | chr5_4:15625975-15625994 | Msa0840060:CDS | 40.0% | |
| ! | GACGTTTACAGCATTTTCAG+CGG | + | chr5_4:15626077-15626096 | Msa0840060:intron | 40.0% |
| ! | ATTTTCAGCGGCATATCGTT+CGG | + | chr5_4:15626089-15626108 | Msa0840060:CDS | 40.0% |
| TTCTGTTAGTTCCAAGCAGA+TGG | + | chr5_4:15626129-15626148 | Msa0840060:CDS | 40.0% | |
| GTATACTTCAGTGAGGAAGT+TGG | + | chr5_4:15626237-15626256 | Msa0840060:intron | 40.0% | |
| GCTAAGGACTGTTGTAAGTA+TGG | + | chr5_4:15626259-15626278 | Msa0840060:CDS | 40.0% | |
| !! | TTGAAGAGAAGCACTTGCAA+GGG | - | chr5_4:15626317-15626336 | None:intergenic | 40.0% |
| !! | ATTGAAGAGAAGCACTTGCA+AGG | - | chr5_4:15626318-15626337 | None:intergenic | 40.0% |
| GCAAGTGCTTCTCTTCAATT+CGG | + | chr5_4:15626319-15626338 | Msa0840060:CDS | 40.0% | |
| AATGAAAGGGAGACTTTGCT+TGG | + | chr5_4:15626364-15626383 | Msa0840060:CDS | 40.0% | |
| ATGAAAGGGAGACTTTGCTT+GGG | + | chr5_4:15626365-15626384 | Msa0840060:CDS | 40.0% | |
| ! | GGTGATCAGGTAATCTTTTG+GGG | + | chr5_4:15626394-15626413 | Msa0840060:intron | 40.0% |
| TTCTTCGATACTCTTCAGTG+TGG | + | chr5_4:15626420-15626439 | Msa0840060:intron | 40.0% | |
| TTCTTCGATACTCTTCAGTG+TGG | - | chr5_4:15626420-15626439 | None:intergenic | 40.0% | |
| ! | GGTGATCAGGTAATCTTTTG+GGG | - | chr5_4:15626394-15626413 | None:intergenic | 40.0% |
| ATGAAAGGGAGACTTTGCTT+GGG | - | chr5_4:15626365-15626384 | None:intergenic | 40.0% | |
| AATGAAAGGGAGACTTTGCT+TGG | - | chr5_4:15626364-15626383 | None:intergenic | 40.0% | |
| ! | CTGATTTACTGGCTATCTTG+TGG | + | chr5_4:15626967-15626986 | Msa0840060:intron | 40.0% |
| ! | AATAAGAAGCCCTAGTTCTC+TGG | + | chr5_4:15627117-15627136 | Msa0840060:intron | 40.0% |
| GTCAATAGTTCCAGAGAACT+AGG | - | chr5_4:15627130-15627149 | None:intergenic | 40.0% | |
| !! | TTAGAAGCACCATTCTTGTC+TGG | - | chr5_4:15627309-15627328 | None:intergenic | 40.0% |
| ACAAATAACAGGAGCTCCTT+TGG | + | chr5_4:15627371-15627390 | Msa0840060:CDS | 40.0% | |
| ACGAAGTTTGTCGTAGTTGT+GGG | - | chr5_4:15627415-15627434 | None:intergenic | 40.0% | |
| GTAGTAATTTACCGCCACAA+TGG | + | chr5_4:15627453-15627472 | Msa0840060:intron | 40.0% | |
| ! | GAAAGAGCATAAATCTGCCT+TGG | + | chr5_4:15627623-15627642 | Msa0840060:CDS | 40.0% |
| ATACCATTGTAGAAAGGCTC+TGG | - | chr5_4:15627716-15627735 | None:intergenic | 40.0% | |
| CCTATCGAGTTACACCTATT+GGG | - | chr5_4:15627890-15627909 | None:intergenic | 40.0% | |
| CCAATAGGTGTAACTCGATA+GGG | + | chr5_4:15627888-15627907 | Msa0840060:intron | 40.0% | |
| AGTCAAATCAGCAACCAATG+GGG | - | chr5_4:15627978-15627997 | None:intergenic | 40.0% | |
| ! | TTTCTTGTTTGTCACTGGCA+AGG | + | chr5_4:15628136-15628155 | Msa0840060:intron | 40.0% |
| CACAGTCAATCTGTCCATTA+GGG | + | chr5_4:15628224-15628243 | Msa0840060:intron | 40.0% | |
| GAAATCTTCACGCTAAATGC+AGG | + | chr5_4:15628271-15628290 | Msa0840060:intron | 40.0% | |
| !!! | TTTTTTTGTTTGGGGAAGGG+AGG | - | chr5_4:15628501-15628520 | None:intergenic | 40.0% |
| AAAAGGGGGAACAAAAGGAA+AGG | - | chr5_4:15628540-15628559 | None:intergenic | 40.0% | |
| ! | TTTCCTTTTGTTCCCCCTTT+TGG | + | chr5_4:15628539-15628558 | Msa0840060:intron | 40.0% |
| !! | CTATTGTACATGTTGGCTTC+TGG | + | chr5_4:15628690-15628709 | Msa0840060:intron | 40.0% |
| TACCTTTCATCGGATGTTCT+TGG | + | chr5_4:15628761-15628780 | Msa0840060:intron | 40.0% | |
| GGAAATGATGTAGAGTCTTG+TGG | - | chr5_4:15628817-15628836 | None:intergenic | 40.0% | |
| ATCATTTCCACTGCCAAAAG+AGG | + | chr5_4:15628828-15628847 | Msa0840060:CDS | 40.0% | |
| ! | TTATGTTCCTCTTTTGGCAG+TGG | - | chr5_4:15628838-15628857 | None:intergenic | 40.0% |
| !!! | GGGCACATACTTTTTTGCAA+AGG | + | chr5_4:15628918-15628937 | Msa0840060:CDS | 40.0% |
| AACAGTCAACTGCAGGAATA+TGG | - | chr5_4:15629001-15629020 | None:intergenic | 40.0% | |
| TCCCATGTAAAAGAGGTAAC+TGG | - | chr5_4:15629215-15629234 | None:intergenic | 40.0% | |
| !! | CTCATCTTGATTTGCCTTGT+AGG | + | chr5_4:15629409-15629428 | Msa0840060:intron | 40.0% |
| CATTTGATGCTCAAGCTGAA+GGG | + | chr5_4:15629441-15629460 | Msa0840060:CDS | 40.0% | |
| ATTTGATGCTCAAGCTGAAG+GGG | + | chr5_4:15629442-15629461 | Msa0840060:CDS | 40.0% | |
| CTGGAAATTCAACCACCAAA+AGG | - | chr5_4:15629797-15629816 | None:intergenic | 40.0% | |
| !! | CTTTTGGTGGTTGAATTTCC+AGG | + | chr5_4:15629795-15629814 | Msa0840060:intron | 40.0% |
| TGGTCTGAAGGAGAATTCAA+TGG | + | chr5_4:15629832-15629851 | Msa0840060:CDS | 40.0% | |
| AATTCAATGGCAATGCTGGA+TGG | + | chr5_4:15629845-15629864 | Msa0840060:CDS | 40.0% | |
| TGTCTCTGTACATAAGCAGA+GGG | - | chr5_4:15629874-15629893 | None:intergenic | 40.0% | |
| TAAGCCCTTAGGGTTATCTA+AGG | + | chr5_4:15630146-15630165 | Msa0840060:three_prime_UTR | 40.0% | |
| TTTGAGAGTAGCACCAGACA+CGG | - | chr5_4:15624701-15624720 | None:intergenic | 45.0% | |
| TCTGGAAAGTCCCAGGTATA+AGG | + | chr5_4:15624835-15624854 | Msa0840060:intron | 45.0% | |
| GGAAGCAAGCTAGTAGATTG+AGG | + | chr5_4:15624998-15625017 | Msa0840060:CDS | 45.0% | |
| ACAAGTTGCCAAGCAACAAC+AGG | + | chr5_4:15625023-15625042 | Msa0840060:CDS | 45.0% | |
| GATCACTACCTGTTGTTGCT+TGG | - | chr5_4:15625034-15625053 | None:intergenic | 45.0% | |
| TAAGCAAGTGTTCGGTTCTG+CGG | - | chr5_4:15625411-15625430 | None:intergenic | 45.0% | |
| AACAAGCCTTAGCGTGTGTT+TGG | - | chr5_4:15625711-15625730 | None:intergenic | 45.0% | |
| TGAGCGGTTCATTGCTAAGT+TGG | - | chr5_4:15625906-15625925 | None:intergenic | 45.0% | |
| ACTTAGCAATGAACCGCTCA+TGG | + | chr5_4:15625906-15625925 | Msa0840060:CDS | 45.0% | |
| TCAGATTCATCAGCCATGAG+CGG | - | chr5_4:15625922-15625941 | None:intergenic | 45.0% | |
| ! | TTTTCAGCGGCATATCGTTC+GGG | + | chr5_4:15626090-15626109 | Msa0840060:CDS | 45.0% |
| AGTTCCAAGCAGATGGAGAT+AGG | + | chr5_4:15626136-15626155 | Msa0840060:CDS | 45.0% | |
| TTCAGTGAGGAAGTTGGCTA+AGG | + | chr5_4:15626243-15626262 | Msa0840060:intron | 45.0% | |
| !! | TGAAGAGAAGCACTTGCAAG+GGG | - | chr5_4:15626316-15626335 | None:intergenic | 45.0% |
| GAGACTTTGCTTGGGATCTT+AGG | + | chr5_4:15626373-15626392 | Msa0840060:CDS | 45.0% | |
| AACGCCTTATCCCACTAAGT+GGG | + | chr5_4:15626496-15626515 | Msa0840060:intron | 45.0% | |
| AACGCCTTATCCCACTAAGT+GGG | - | chr5_4:15626496-15626515 | None:intergenic | 45.0% | |
| GAGACTTTGCTTGGGATCTT+AGG | - | chr5_4:15626373-15626392 | None:intergenic | 45.0% | |
| TATAGATCTCTGAGCCACTG+CGG | + | chr5_4:15627346-15627365 | Msa0840060:intron | 45.0% | |
| GACGAAGTTTGTCGTAGTTG+TGG | - | chr5_4:15627416-15627435 | None:intergenic | 45.0% | |
| TGTGGCGGTAAATTACTACC+TGG | - | chr5_4:15627452-15627471 | None:intergenic | 45.0% | |
| ! | ATCAGGCTGCTGAAGTTTTG+AGG | + | chr5_4:15627526-15627545 | Msa0840060:intron | 45.0% |
| TTTCTGCAGAGAGTTCCATG+AGG | + | chr5_4:15627577-15627596 | Msa0840060:CDS | 45.0% | |
| !! | TTCTGCATTCTGAAGCCTCA+TGG | - | chr5_4:15627595-15627614 | None:intergenic | 45.0% |
| AGAGCATAAATCTGCCTTGG+TGG | + | chr5_4:15627626-15627645 | Msa0840060:CDS | 45.0% | |
| TCTCCAGAGCCTTTCTACAA+TGG | + | chr5_4:15627710-15627729 | Msa0840060:CDS | 45.0% | |
| CTCGCCTATGAGGTTAATCT+TGG | + | chr5_4:15627825-15627844 | Msa0840060:intron | 45.0% | |
| ATCGAGTTACACCTATTGGG+AGG | - | chr5_4:15627887-15627906 | None:intergenic | 45.0% | |
| CCCAATAGGTGTAACTCGAT+AGG | + | chr5_4:15627887-15627906 | Msa0840060:intron | 45.0% | |
| CCCTATCGAGTTACACCTAT+TGG | - | chr5_4:15627891-15627910 | None:intergenic | 45.0% | |
| AATAACTTCCCCCTGAAAGG+AGG | - | chr5_4:15627940-15627959 | None:intergenic | 45.0% | |
| GGAAATAACTTCCCCCTGAA+AGG | - | chr5_4:15627943-15627962 | None:intergenic | 45.0% | |
| ! | CCTAATGGACAGATTGACTG+TGG | - | chr5_4:15628226-15628245 | None:intergenic | 45.0% |
| CCACAGTCAATCTGTCCATT+AGG | + | chr5_4:15628223-15628242 | Msa0840060:intron | 45.0% | |
| TTCACGCTAAATGCAGGGTT+CGG | + | chr5_4:15628277-15628296 | Msa0840060:intron | 45.0% | |
| ! | ATGCTGAGAGAGCTTTTCAC+CGG | + | chr5_4:15628569-15628588 | Msa0840060:CDS | 45.0% |
| ! | CTAGAATAACAAGGGCATGC+CGG | - | chr5_4:15628591-15628610 | None:intergenic | 45.0% |
| ! | GAACATCCGATGAAAGGTAC+AGG | - | chr5_4:15628760-15628779 | None:intergenic | 45.0% |
| CTCCAAGAACATCCGATGAA+AGG | - | chr5_4:15628766-15628785 | None:intergenic | 45.0% | |
| CTTGATCAACAGTCAACTGC+AGG | - | chr5_4:15629008-15629027 | None:intergenic | 45.0% | |
| TTCTGCGTCCCATGTAAAAG+AGG | - | chr5_4:15629222-15629241 | None:intergenic | 45.0% | |
| CCTTCAGCTTGAGCATCAAA+TGG | - | chr5_4:15629443-15629462 | None:intergenic | 45.0% | |
| CCATTTGATGCTCAAGCTGA+AGG | + | chr5_4:15629440-15629459 | Msa0840060:CDS | 45.0% | |
| CGATTATGTTGTAGTCCGTC+AGG | + | chr5_4:15629484-15629503 | Msa0840060:CDS | 45.0% | |
| AATTTCCAGGTTGCTGCCAA+TGG | + | chr5_4:15629808-15629827 | Msa0840060:intron | 45.0% | |
| TTCTCCTTCAGACCATCCAT+TGG | - | chr5_4:15629827-15629846 | None:intergenic | 45.0% | |
| GGAGAATTCAATGGCAATGC+TGG | + | chr5_4:15629841-15629860 | Msa0840060:CDS | 45.0% | |
| CTGTCTCTGTACATAAGCAG+AGG | - | chr5_4:15629875-15629894 | None:intergenic | 45.0% | |
| CTCTGCTTATGTACAGAGAC+AGG | + | chr5_4:15629873-15629892 | Msa0840060:CDS | 45.0% | |
| AGTACCAGCGAACAAGATAC+CGG | + | chr5_4:15629900-15629919 | Msa0840060:CDS | 45.0% | |
| TATTCCGGTATCTTGTTCGC+TGG | - | chr5_4:15629907-15629926 | None:intergenic | 45.0% | |
| !!! | TATTTTTTTTTTTTTTGTTT+GGG | - | chr5_4:15628510-15628529 | None:intergenic | 5.0% |
| !!! | ATATTTTTTTTTTTTTTGTT+TGG | - | chr5_4:15628511-15628530 | None:intergenic | 5.0% |
| GCAGAACCAAACACACGCTA+AGG | + | chr5_4:15625702-15625721 | Msa0840060:intron | 50.0% | |
| TTTCAGCGGCATATCGTTCG+GGG | + | chr5_4:15626091-15626110 | Msa0840060:CDS | 50.0% | |
| GTCACCTATCTCCATCTGCT+TGG | - | chr5_4:15626143-15626162 | None:intergenic | 50.0% | |
| GGGACTGAGAATGACAACCA+AGG | + | chr5_4:15626280-15626299 | Msa0840060:CDS | 50.0% | |
| CAAGGGGGTAAGTACTACCT+TGG | - | chr5_4:15626300-15626319 | None:intergenic | 50.0% | |
| !! | GAAGAGAAGCACTTGCAAGG+GGG | - | chr5_4:15626315-15626334 | None:intergenic | 50.0% |
| GCTTGGGATCTTAGGTGATC+AGG | + | chr5_4:15626381-15626400 | Msa0840060:CDS | 50.0% | |
| CAACGCCTTATCCCACTAAG+TGG | + | chr5_4:15626495-15626514 | Msa0840060:intron | 50.0% | |
| ACGCCTTATCCCACTAAGTG+GGG | + | chr5_4:15626497-15626516 | Msa0840060:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr5_4:15626501-15626520 | Msa0840060:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr5_4:15626501-15626520 | None:intergenic | 50.0% | |
| ACGCCTTATCCCACTAAGTG+GGG | - | chr5_4:15626497-15626516 | None:intergenic | 50.0% | |
| CAACGCCTTATCCCACTAAG+TGG | - | chr5_4:15626495-15626514 | None:intergenic | 50.0% | |
| GCTTGGGATCTTAGGTGATC+AGG | - | chr5_4:15626381-15626400 | None:intergenic | 50.0% | |
| ATAGATCTCTGAGCCACTGC+GGG | + | chr5_4:15627347-15627366 | Msa0840060:intron | 50.0% | |
| AGATGGCGTGCATCTTCCAA+AGG | - | chr5_4:15627390-15627409 | None:intergenic | 50.0% | |
| TGTCGTAGTTGTGGGTGAGA+TGG | - | chr5_4:15627407-15627426 | None:intergenic | 50.0% | |
| TCGTCAAGAAGTAGAAGGCC+AGG | + | chr5_4:15627431-15627450 | Msa0840060:CDS | 50.0% | |
| CCATATGCATGCCATTGTGG+CGG | - | chr5_4:15627467-15627486 | None:intergenic | 50.0% | |
| CCACCATATGCATGCCATTG+TGG | - | chr5_4:15627470-15627489 | None:intergenic | 50.0% | |
| CCACAATGGCATGCATATGG+TGG | + | chr5_4:15627467-15627486 | Msa0840060:intron | 50.0% | |
| !! | TGAGGCGTCGATCAAAGTTG+AGG | + | chr5_4:15627544-15627563 | Msa0840060:CDS | 50.0% |
| !! | GAGGCGTCGATCAAAGTTGA+GGG | + | chr5_4:15627545-15627564 | Msa0840060:CDS | 50.0% |
| ! | AAATCTGCCTTGGTGGCACT+TGG | + | chr5_4:15627633-15627652 | Msa0840060:CDS | 50.0% |
| TTCTCTACCAAGTGCCACCA+AGG | - | chr5_4:15627643-15627662 | None:intergenic | 50.0% | |
| TGCTGCTATGTCGTCAGTTG+AGG | + | chr5_4:15627668-15627687 | Msa0840060:CDS | 50.0% | |
| GAGTGTCAAAAGCTCTCGGT+CGG | - | chr5_4:15627808-15627827 | None:intergenic | 50.0% | |
| AGGCGAGTGTCAAAAGCTCT+CGG | - | chr5_4:15627812-15627831 | None:intergenic | 50.0% | |
| ! | GCTTTTGACACTCGCCTATG+AGG | + | chr5_4:15627815-15627834 | Msa0840060:intron | 50.0% |
| ATTGGGAGGCTGAGAACCAA+AGG | - | chr5_4:15627873-15627892 | None:intergenic | 50.0% | |
| ! | TTGGTTCTCAGCCTCCCAAT+AGG | + | chr5_4:15627873-15627892 | Msa0840060:intron | 50.0% |
| ACTCGCGTTCTACACCCTAA+TGG | - | chr5_4:15628241-15628260 | None:intergenic | 50.0% | |
| CTGCCAAAAGGGGGAACAAA+AGG | - | chr5_4:15628545-15628564 | None:intergenic | 50.0% | |
| ! | CTTTTGTTCCCCCTTTTGGC+AGG | + | chr5_4:15628543-15628562 | Msa0840060:intron | 50.0% |
| TCAGCATCCACCTGCCAAAA+GGG | - | chr5_4:15628556-15628575 | None:intergenic | 50.0% | |
| ! | CTCTCTCTCTGGAAAGTCCC+AGG | + | chr5_4:15624828-15624847 | Msa0840060:five_prime_UTR | 55.0% |
| !! | CATATCGTTCGGGGCGTTGA+AGG | + | chr5_4:15626100-15626119 | Msa0840060:CDS | 55.0% |
| CGACCCCACTTAGTGGGATA+AGG | - | chr5_4:15626721-15626740 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr5_4:15626715-15626734 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr5_4:15626714-15626733 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr5_4:15626509-15626528 | Msa0840060:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr5_4:15626509-15626528 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr5_4:15626714-15626733 | Msa0840060:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr5_4:15626715-15626734 | Msa0840060:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr5_4:15626721-15626740 | Msa0840060:intron | 55.0% | |
| ! | CCTGTTATTTGTGCCCGCAG+TGG | - | chr5_4:15627363-15627382 | None:intergenic | 55.0% |
| CCACTGCGGGCACAAATAAC+AGG | + | chr5_4:15627360-15627379 | Msa0840060:CDS | 55.0% | |
| CCGCCACAATGGCATGCATA+TGG | + | chr5_4:15627464-15627483 | Msa0840060:intron | 55.0% | |
| GATTCGAACCCAGATTCCCC+AGG | + | chr5_4:15627910-15627929 | Msa0840060:intron | 55.0% | |
| GAGGAGAACCTGGGGAATCT+GGG | - | chr5_4:15627921-15627940 | None:intergenic | 55.0% | |
| CCTGAAAGGAGGAGAACCTG+GGG | - | chr5_4:15627929-15627948 | None:intergenic | 55.0% | |
| CCCTGAAAGGAGGAGAACCT+GGG | - | chr5_4:15627930-15627949 | None:intergenic | 55.0% | |
| CCCAGGTTCTCCTCCTTTCA+GGG | + | chr5_4:15627927-15627946 | Msa0840060:intron | 55.0% | |
| CCAGGTTCTCCTCCTTTCAG+GGG | + | chr5_4:15627928-15627947 | Msa0840060:intron | 55.0% | |
| CAGGTTCTCCTCCTTTCAGG+GGG | + | chr5_4:15627929-15627948 | Msa0840060:intron | 55.0% | |
| ! | CCAATGGGGTGTTTGTCGAG+TGG | - | chr5_4:15627964-15627983 | None:intergenic | 55.0% |
| CCACTCGACAAACACCCCAT+TGG | + | chr5_4:15627961-15627980 | Msa0840060:intron | 55.0% | |
| ! | TTGTTCCCCCTTTTGGCAGG+TGG | + | chr5_4:15628546-15628565 | Msa0840060:intron | 55.0% |
| AGCATCCACCTGCCAAAAGG+GGG | - | chr5_4:15628554-15628573 | None:intergenic | 55.0% | |
| CAGCATCCACCTGCCAAAAG+GGG | - | chr5_4:15628555-15628574 | None:intergenic | 55.0% | |
| CTCAGCATCCACCTGCCAAA+AGG | - | chr5_4:15628557-15628576 | None:intergenic | 55.0% | |
| TCCAGGTTGCTGCCAATGGA+TGG | + | chr5_4:15629812-15629831 | Msa0840060:intron | 55.0% | |
| ACCATCCATTGGCAGCAACC+TGG | - | chr5_4:15629816-15629835 | None:intergenic | 55.0% | |
| GCTGCCAATGGATGGTCTGA+AGG | + | chr5_4:15629820-15629839 | Msa0840060:CDS | 55.0% | |
| GTCAAGCTCGTGTCCGTGTC+TGG | + | chr5_4:15624685-15624704 | Msa0840060:five_prime_UTR | 60.0% | |
| GGAGGAGAACCTGGGGAATC+TGG | - | chr5_4:15627922-15627941 | None:intergenic | 60.0% | |
| CCCCAGGTTCTCCTCCTTTC+AGG | + | chr5_4:15627926-15627945 | Msa0840060:intron | 60.0% | |
| CCCCTGAAAGGAGGAGAACC+TGG | - | chr5_4:15627931-15627950 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 15624684 | 15630278 | 15624684 | ID=Msa0840060;Name=Msa0840060 |
| chr5_4 | mRNA | 15624684 | 15630278 | 15624684 | ID=Msa0840060-mRNA-1;Parent=Msa0840060;Name=Msa0840060-mRNA-1;_AED=0.16;_eAED=0.16;_QI=188|1|1|1|0.9|0.81|11|351|366 |
| chr5_4 | exon | 15624684 | 15624849 | 15624684 | ID=Msa0840060-mRNA-1:exon:6702;Parent=Msa0840060-mRNA-1 |
| chr5_4 | exon | 15624963 | 15625044 | 15624963 | ID=Msa0840060-mRNA-1:exon:6703;Parent=Msa0840060-mRNA-1 |
| chr5_4 | exon | 15625883 | 15625996 | 15625883 | ID=Msa0840060-mRNA-1:exon:6704;Parent=Msa0840060-mRNA-1 |
| chr5_4 | exon | 15626088 | 15626157 | 15626088 | ID=Msa0840060-mRNA-1:exon:6705;Parent=Msa0840060-mRNA-1 |
| chr5_4 | exon | 15626248 | 15626402 | 15626248 | ID=Msa0840060-mRNA-1:exon:6706;Parent=Msa0840060-mRNA-1 |
| chr5_4 | exon | 15627351 | 15627452 | 15627351 | ID=Msa0840060-mRNA-1:exon:6707;Parent=Msa0840060-mRNA-1 |
| chr5_4 | exon | 15627531 | 15627731 | 15627531 | ID=Msa0840060-mRNA-1:exon:6708;Parent=Msa0840060-mRNA-1 |
| chr5_4 | exon | 15628565 | 15628627 | 15628565 | ID=Msa0840060-mRNA-1:exon:6709;Parent=Msa0840060-mRNA-1 |
| chr5_4 | exon | 15628790 | 15628939 | 15628790 | ID=Msa0840060-mRNA-1:exon:6710;Parent=Msa0840060-mRNA-1 |
| chr5_4 | exon | 15629431 | 15629505 | 15629431 | ID=Msa0840060-mRNA-1:exon:6711;Parent=Msa0840060-mRNA-1 |
| chr5_4 | exon | 15629817 | 15630278 | 15629817 | ID=Msa0840060-mRNA-1:exon:6712;Parent=Msa0840060-mRNA-1 |
| chr5_4 | five_prime_UTR | 15624684 | 15624849 | 15624684 | ID=Msa0840060-mRNA-1:five_prime_utr;Parent=Msa0840060-mRNA-1 |
| chr5_4 | five_prime_UTR | 15624963 | 15624984 | 15624963 | ID=Msa0840060-mRNA-1:five_prime_utr;Parent=Msa0840060-mRNA-1 |
| chr5_4 | CDS | 15624985 | 15625044 | 15624985 | ID=Msa0840060-mRNA-1:cds;Parent=Msa0840060-mRNA-1 |
| chr5_4 | CDS | 15625883 | 15625996 | 15625883 | ID=Msa0840060-mRNA-1:cds;Parent=Msa0840060-mRNA-1 |
| chr5_4 | CDS | 15626088 | 15626157 | 15626088 | ID=Msa0840060-mRNA-1:cds;Parent=Msa0840060-mRNA-1 |
| chr5_4 | CDS | 15626248 | 15626402 | 15626248 | ID=Msa0840060-mRNA-1:cds;Parent=Msa0840060-mRNA-1 |
| chr5_4 | CDS | 15627351 | 15627452 | 15627351 | ID=Msa0840060-mRNA-1:cds;Parent=Msa0840060-mRNA-1 |
| chr5_4 | CDS | 15627531 | 15627731 | 15627531 | ID=Msa0840060-mRNA-1:cds;Parent=Msa0840060-mRNA-1 |
| chr5_4 | CDS | 15628565 | 15628627 | 15628565 | ID=Msa0840060-mRNA-1:cds;Parent=Msa0840060-mRNA-1 |
| chr5_4 | CDS | 15628790 | 15628939 | 15628790 | ID=Msa0840060-mRNA-1:cds;Parent=Msa0840060-mRNA-1 |
| chr5_4 | CDS | 15629431 | 15629505 | 15629431 | ID=Msa0840060-mRNA-1:cds;Parent=Msa0840060-mRNA-1 |
| chr5_4 | CDS | 15629817 | 15629927 | 15629817 | ID=Msa0840060-mRNA-1:cds;Parent=Msa0840060-mRNA-1 |
| chr5_4 | three_prime_UTR | 15629928 | 15630278 | 15629928 | ID=Msa0840060-mRNA-1:three_prime_utr;Parent=Msa0840060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
