Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824840 | XP_024639157.1 | 60.482 | 539 | 138 | 8 | 15 | 484 | 3 | 535 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824840 | G7K4M4 | 59.853 | 543 | 139 | 8 | 15 | 484 | 3 | 539 | 0.0 | 596 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa0824840 | 0.808390 | 3.170711e-50 | -8.615850e-47 |
| Msa0017510 | Msa0824840 | 0.847240 | 1.310715e-59 | -8.615850e-47 |
| Msa0024550 | Msa0824840 | 0.813945 | 1.979492e-51 | -8.615850e-47 |
| Msa0028640 | Msa0824840 | 0.810390 | 1.180451e-50 | -8.615850e-47 |
| Msa0076250 | Msa0824840 | 0.830860 | 2.314724e-55 | -8.615850e-47 |
| Msa0120400 | Msa0824840 | 0.815182 | 1.053950e-51 | -8.615850e-47 |
| Msa0657970 | Msa0824840 | 0.829549 | 4.836475e-55 | -8.615850e-47 |
| Msa0743890 | Msa0824840 | 0.898309 | 6.018235e-77 | -8.615850e-47 |
| Msa0786500 | Msa0824840 | 0.831834 | 1.332910e-55 | -8.615850e-47 |
| Msa0816150 | Msa0824840 | 0.974766 | 9.740547e-139 | -8.615850e-47 |
| Msa0822870 | Msa0824840 | 0.814435 | 1.542622e-51 | -8.615850e-47 |
| Msa0824840 | Msa0828560 | 0.801396 | 9.183461e-49 | -8.615850e-47 |
| Msa0824840 | Msa0870640 | 0.812177 | 4.833491e-51 | -8.615850e-47 |
| Msa0824840 | Msa0880140 | 0.842878 | 1.975899e-58 | -8.615850e-47 |
| Msa0824840 | Msa0890320 | 0.823367 | 1.439139e-53 | -8.615850e-47 |
| Msa0824840 | Msa0909120 | 0.842906 | 1.941918e-58 | -8.615850e-47 |
| Msa0824840 | Msa0909140 | 0.817794 | 2.741789e-52 | -8.615850e-47 |
| Msa0824840 | Msa0948290 | 0.802121 | 6.519700e-49 | -8.615850e-47 |
| Msa0824840 | Msa0964840 | 0.826151 | 3.175574e-54 | -8.615850e-47 |
| Msa0824840 | Msa0967380 | 0.813951 | 1.973207e-51 | -8.615850e-47 |
| Msa0824840 | Msa1019430 | 0.801500 | 8.746285e-49 | -8.615850e-47 |
| Msa0824840 | Msa1209460 | 0.800278 | 1.553508e-48 | -8.615850e-47 |
| Msa0824840 | Msa1283860 | 0.822507 | 2.282929e-53 | -8.615850e-47 |
| Msa0824840 | Msa1366340 | 0.806366 | 8.518451e-50 | -8.615850e-47 |
| Msa0824840 | Msa1372760 | 0.804568 | 2.029371e-49 | -8.615850e-47 |
| Msa0824840 | Msa1374550 | 0.826345 | 2.854292e-54 | -8.615850e-47 |
| Msa0824840 | Msa1438250 | 0.841784 | 3.850713e-58 | -8.615850e-47 |
| Msa0139060 | Msa0824840 | 0.901292 | 3.104009e-78 | -8.615850e-47 |
| Msa0157290 | Msa0824840 | 0.848264 | 6.846674e-60 | -8.615850e-47 |
| Msa0164330 | Msa0824840 | 0.801476 | 8.842626e-49 | -8.615850e-47 |
| Msa0168650 | Msa0824840 | 0.819448 | 1.155446e-52 | -8.615850e-47 |
| Msa0200260 | Msa0824840 | 0.815043 | 1.131716e-51 | -8.615850e-47 |
| Msa0212990 | Msa0824840 | 0.801930 | 7.137497e-49 | -8.615850e-47 |
| Msa0220740 | Msa0824840 | 0.806379 | 8.463297e-50 | -8.615850e-47 |
| Msa0230740 | Msa0824840 | 0.804724 | 1.883243e-49 | -8.615850e-47 |
| Msa0376350 | Msa0824840 | 0.800404 | 1.464585e-48 | -8.615850e-47 |
| Msa0392510 | Msa0824840 | 0.812746 | 3.629661e-51 | -8.615850e-47 |
| Msa0417100 | Msa0824840 | 0.802380 | 5.765792e-49 | -8.615850e-47 |
| Msa0424790 | Msa0824840 | 0.804185 | 2.439070e-49 | -8.615850e-47 |
| Msa0440750 | Msa0824840 | 0.801511 | 8.698602e-49 | -8.615850e-47 |
| Msa0443260 | Msa0824840 | 0.801693 | 7.983126e-49 | -8.615850e-47 |
| Msa0243100 | Msa0824840 | 0.815194 | 1.047558e-51 | -8.615850e-47 |
| Msa0261340 | Msa0824840 | 0.814586 | 1.428523e-51 | -8.615850e-47 |
| Msa0287650 | Msa0824840 | 0.801960 | 7.034854e-49 | -8.615850e-47 |
| Msa0357340 | Msa0824840 | 0.828893 | 6.978069e-55 | -8.615850e-47 |
| Msa0602240 | Msa0824840 | 0.814307 | 1.646938e-51 | -8.615850e-47 |
| Msa0602250 | Msa0824840 | 0.814174 | 1.762424e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824840 | MtrunA17_Chr5g0446191 | 59.586 | 532 | 136 | 8 | 26 | 484 | 20 | 545 | 0.0 | 577 |
| Msa0824840 | MtrunA17_Chr5g0446231 | 52.110 | 545 | 171 | 14 | 22 | 484 | 1 | 537 | 1.25e-167 | 484 |
| Msa0824840 | MtrunA17_Chr5g0446171 | 70.139 | 144 | 34 | 2 | 1 | 135 | 1 | 144 | 3.19e-58 | 192 |
| Msa0824840 | MtrunA17_Chr5g0413371 | 66.667 | 108 | 36 | 0 | 18 | 125 | 2 | 109 | 3.84e-37 | 144 |
| Msa0824840 | MtrunA17_Chr4g0012551 | 33.835 | 266 | 141 | 10 | 211 | 463 | 1 | 244 | 1.44e-31 | 122 |
| Msa0824840 | MtrunA17_Chr5g0445881 | 40.741 | 162 | 67 | 5 | 1 | 134 | 1 | 161 | 2.54e-21 | 96.7 |
| Msa0824840 | MtrunA17_Chr5g0445831 | 41.250 | 160 | 69 | 4 | 1 | 136 | 1 | 159 | 4.12e-21 | 95.5 |
| Msa0824840 | MtrunA17_Chr5g0445771 | 42.581 | 155 | 63 | 3 | 4 | 135 | 2 | 153 | 4.62e-21 | 95.9 |
| Msa0824840 | MtrunA17_Chr6g0462331 | 26.689 | 296 | 184 | 9 | 213 | 485 | 8 | 293 | 7.37e-21 | 95.1 |
| Msa0824840 | MtrunA17_Chr5g0445861 | 39.130 | 184 | 60 | 8 | 1 | 135 | 1 | 181 | 9.54e-20 | 91.7 |
| Msa0824840 | MtrunA17_Chr6g0477621 | 36.667 | 150 | 86 | 3 | 313 | 459 | 11 | 154 | 3.82e-19 | 87.4 |
| Msa0824840 | MtrunA17_Chr3g0085601 | 28.426 | 197 | 122 | 6 | 289 | 479 | 2 | 185 | 2.22e-17 | 82.8 |
| Msa0824840 | MtrunA17_Chr1g0174681 | 35.185 | 108 | 63 | 2 | 356 | 463 | 11 | 111 | 1.15e-16 | 80.1 |
| Msa0824840 | MtrunA17_Chr7g0226131 | 26.778 | 239 | 151 | 9 | 208 | 433 | 6 | 233 | 2.12e-15 | 75.5 |
| Msa0824840 | MtrunA17_Chr5g0416551 | 28.652 | 178 | 112 | 5 | 286 | 459 | 1 | 167 | 1.20e-13 | 70.1 |
| Msa0824840 | MtrunA17_Chr1g0202531 | 27.465 | 284 | 175 | 10 | 215 | 474 | 26 | 302 | 9.36e-12 | 67.0 |
| Msa0824840 | MtrunA17_Chr7g0215391 | 27.160 | 243 | 149 | 7 | 215 | 436 | 19 | 254 | 3.07e-11 | 65.5 |
| Msa0824840 | MtrunA17_Chr1g0194781 | 27.160 | 243 | 149 | 7 | 215 | 436 | 19 | 254 | 3.07e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 114 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACAACCCAGGTTCGATTT+TGG | 0.201779 | 5_3:-64455575 | None:intergenic |
| GTTCTTTGCAAATGCATATC+TGG | 0.205513 | 5_3:+64458558 | Msa0824840:CDS |
| AGAGCACTATTCGAAGTTTC+TGG | 0.226886 | 5_3:+64458397 | Msa0824840:CDS |
| AAAATTATCAATGGATTGTT+TGG | 0.246344 | 5_3:+64458667 | Msa0824840:CDS |
| TTATAGTTCCCATCTTCTTT+AGG | 0.261328 | 5_3:-64458586 | None:intergenic |
| TTATGTCATTTAAGTTATAA+TGG | 0.279777 | 5_3:-64459151 | None:intergenic |
| AGGGTTGGGGTTGCCCATTT+TGG | 0.308578 | 5_3:+64457008 | Msa0824840:CDS |
| GTACAAATTCTCAGATATTC+AGG | 0.317285 | 5_3:+64458462 | Msa0824840:CDS |
| CATTGACTGGTTCGCCCTTA+AGG | 0.319854 | 5_3:-64458948 | None:intergenic |
| TAGAGGGTTCACGTCCAAAA+TGG | 0.327794 | 5_3:-64457022 | None:intergenic |
| CTTCCTAACCCAATCGGCCT+CGG | 0.330220 | 5_3:-64458782 | None:intergenic |
| CTTGATAACTGCAATCCTTA+AGG | 0.357132 | 5_3:+64458933 | Msa0824840:CDS |
| GTTTCCTAGCAAATGACCTT+CGG | 0.361574 | 5_3:+64458977 | Msa0824840:CDS |
| AAGAAAGAAGAATAATGAAT+TGG | 0.367091 | 5_3:+64455912 | Msa0824840:CDS |
| CTTGGAAGACATGAGCATTC+AGG | 0.367632 | 5_3:+64455615 | Msa0824840:CDS |
| ATGCTTTAGCAGTGGGTGTC+AGG | 0.376463 | 5_3:-64458840 | None:intergenic |
| GTGCAGGCCCGAGGCCGATT+GGG | 0.381424 | 5_3:+64458774 | Msa0824840:CDS |
| TGTGCAGGCCCGAGGCCGAT+TGG | 0.385248 | 5_3:+64458773 | Msa0824840:CDS |
| GAGCATTCAGGAACTTGTTT+CGG | 0.395229 | 5_3:+64455627 | Msa0824840:CDS |
| CCTCTATTACCTCTTTATGT+AGG | 0.400563 | 5_3:+64457039 | Msa0824840:CDS |
| AAATTATCAATGGATTGTTT+GGG | 0.400666 | 5_3:+64458668 | Msa0824840:CDS |
| TTGATAACTGCAATCCTTAA+GGG | 0.407477 | 5_3:+64458934 | Msa0824840:CDS |
| GGGATCTAACATTGATCATC+AGG | 0.407482 | 5_3:+64458735 | Msa0824840:CDS |
| CGGTGTCGCGTACAGCGTTT+CGG | 0.412285 | 5_3:+64455647 | Msa0824840:CDS |
| TCTATCCATTTCACGGTGAC+TGG | 0.412297 | 5_3:-64459120 | None:intergenic |
| TTCACGGTGACTGGTCTAGA+TGG | 0.418534 | 5_3:-64459111 | None:intergenic |
| CTAGACCAGTCACCGTGAAA+TGG | 0.419439 | 5_3:+64459115 | Msa0824840:CDS |
| ATCTTTCTTCCTAACCCAAT+CGG | 0.420963 | 5_3:-64458788 | None:intergenic |
| ACAGTTTGATGAACTTGAAA+AGG | 0.422370 | 5_3:+64455675 | Msa0824840:CDS |
| AAGAAAACTAGTTTAGTTGA+AGG | 0.432212 | 5_3:+64455871 | Msa0824840:CDS |
| CTTAAGGATTGCAGTTATCA+AGG | 0.437445 | 5_3:-64458932 | None:intergenic |
| TTTCCTAGCAAATGACCTTC+GGG | 0.437545 | 5_3:+64458978 | Msa0824840:CDS |
| GGCCCGAGGCCGATTGGGTT+AGG | 0.439711 | 5_3:+64458779 | Msa0824840:CDS |
| AGGAAACGGCCGACATTGAC+TGG | 0.441613 | 5_3:-64458961 | None:intergenic |
| TTTCATGAGAAAATTATCAA+TGG | 0.445312 | 5_3:+64458658 | Msa0824840:CDS |
| ATGATCAATGTTAGATCCCT+TGG | 0.447829 | 5_3:-64458731 | None:intergenic |
| TTCCTAACCCAATCGGCCTC+GGG | 0.448443 | 5_3:-64458781 | None:intergenic |
| CTGGGTCCTCCTAAAGAAGA+TGG | 0.457044 | 5_3:+64458577 | Msa0824840:CDS |
| ACTTCGAATAGTGCTCTTGA+TGG | 0.457825 | 5_3:-64458391 | None:intergenic |
| GAACTAAAAGAGCTAGGGTT+GGG | 0.458419 | 5_3:+64456994 | Msa0824840:CDS |
| AGAGGGTTCACGTCCAAAAT+GGG | 0.465355 | 5_3:-64457021 | None:intergenic |
| GAAGAATAATGAATTGGAGT+TGG | 0.472786 | 5_3:+64455918 | Msa0824840:CDS |
| CCTACATAAAGAGGTAATAG+AGG | 0.474454 | 5_3:-64457039 | None:intergenic |
| TCTTGCCGCTCATCTACTAT+AGG | 0.475363 | 5_3:-64457083 | None:intergenic |
| TTAGTTGAAGGAGACATTGT+TGG | 0.478274 | 5_3:+64455883 | Msa0824840:CDS |
| ATGATAGTGACCAGAGGATG+GGG | 0.479141 | 5_3:+64458487 | Msa0824840:CDS |
| GTGTTCATTTGAAGCAAGAA+AGG | 0.479787 | 5_3:+64458708 | Msa0824840:CDS |
| CTCTATTACCTCTTTATGTA+GGG | 0.480394 | 5_3:+64457040 | Msa0824840:CDS |
| CATAAACCCAAAATCGAACC+TGG | 0.482521 | 5_3:+64455568 | Msa0824840:CDS |
| TTATCAAGGTTGCTTTCTGA+AGG | 0.485245 | 5_3:-64458918 | None:intergenic |
| TTCAAGCTGAAGAAGATTTG+AGG | 0.489086 | 5_3:+64455779 | Msa0824840:CDS |
| GATCAACAAGCTTTGTGAAA+GGG | 0.494192 | 5_3:+64459050 | Msa0824840:CDS |
| TTCTTTGCAAATGCATATCT+GGG | 0.497315 | 5_3:+64458559 | Msa0824840:CDS |
| CATCATACCTGCACGTCTGA+TGG | 0.501556 | 5_3:-64457164 | None:intergenic |
| TAGTTCCCATCTTCTTTAGG+AGG | 0.502708 | 5_3:-64458583 | None:intergenic |
| AATGATAGTGACCAGAGGAT+GGG | 0.506204 | 5_3:+64458486 | Msa0824840:CDS |
| AGAGAGGAGCTATGCGAAAG+AGG | 0.509036 | 5_3:+64455805 | Msa0824840:CDS |
| TCTGACAACATTTGCAAAAG+AGG | 0.509268 | 5_3:+64458513 | Msa0824840:CDS |
| GCTCAAGGTGAATCATCATC+TGG | 0.509285 | 5_3:+64455994 | Msa0824840:CDS |
| GAGTAATTATGAAACATTGT+TGG | 0.513700 | 5_3:+64455840 | Msa0824840:CDS |
| TGCACGCTCCCTACATAAAG+AGG | 0.520005 | 5_3:-64457048 | None:intergenic |
| GAAGGTCATTTGCTAGGAAA+CGG | 0.522688 | 5_3:-64458975 | None:intergenic |
| AGCTATGCGAAAGAGGGAAA+AGG | 0.524969 | 5_3:+64455812 | Msa0824840:CDS |
| CGGCACGAACTAAAAGAGCT+AGG | 0.525867 | 5_3:+64456988 | Msa0824840:CDS |
| CAATGATAGTGACCAGAGGA+TGG | 0.529533 | 5_3:+64458485 | Msa0824840:CDS |
| ATCAAGGTTGCTTTCTGAAG+GGG | 0.531107 | 5_3:-64458916 | None:intergenic |
| AACTAAAAGAGCTAGGGTTG+GGG | 0.531167 | 5_3:+64456995 | Msa0824840:CDS |
| TGAGAAAGTTGAAGCGAAAG+TGG | 0.531948 | 5_3:+64455953 | Msa0824840:CDS |
| AACAGTTCGCTGCGGCCCGA+AGG | 0.532495 | 5_3:-64458993 | None:intergenic |
| ATTTGAAGCAAGAAAGGCCA+AGG | 0.533782 | 5_3:+64458714 | Msa0824840:CDS |
| GCTATGCGAAAGAGGGAAAA+GGG | 0.535225 | 5_3:+64455813 | Msa0824840:CDS |
| ACAAGCTTTGTGAAAGGGTG+AGG | 0.542004 | 5_3:+64459055 | Msa0824840:CDS |
| GCATGGTTTATGTAGCTTGT+GGG | 0.546630 | 5_3:-64459021 | None:intergenic |
| GAGAGGAGCTATGCGAAAGA+GGG | 0.553414 | 5_3:+64455806 | Msa0824840:CDS |
| CGGCCCGAAGGTCATTTGCT+AGG | 0.557590 | 5_3:-64458981 | None:intergenic |
| AGATTCTTAGTACTCTGTGC+AGG | 0.562380 | 5_3:+64458758 | Msa0824840:CDS |
| TGTCCCTCCATCAGACGTGC+AGG | 0.562640 | 5_3:+64457157 | Msa0824840:CDS |
| TAATTATGAAACATTGTTGG+AGG | 0.563738 | 5_3:+64455843 | Msa0824840:CDS |
| TGATCAACAAGCTTTGTGAA+AGG | 0.564096 | 5_3:+64459049 | Msa0824840:CDS |
| TATCAAGGTTGCTTTCTGAA+GGG | 0.569374 | 5_3:-64458917 | None:intergenic |
| TAGTACTCTGTGCAGGCCCG+AGG | 0.571519 | 5_3:+64458765 | Msa0824840:CDS |
| GATTGGGTTAGGAAGAAAGA+TGG | 0.578358 | 5_3:+64458790 | Msa0824840:CDS |
| TGGGTCCTCCTAAAGAAGAT+GGG | 0.581164 | 5_3:+64458578 | Msa0824840:CDS |
| CACATTTGAACACGGAAGCA+AGG | 0.582698 | 5_3:-64458884 | None:intergenic |
| GACACCCACTGCTAAAGCAT+GGG | 0.585381 | 5_3:+64458843 | Msa0824840:CDS |
| TGACACCCACTGCTAAAGCA+TGG | 0.585774 | 5_3:+64458842 | Msa0824840:CDS |
| GATGTACCCTGAAAAGAATG+AGG | 0.588375 | 5_3:+64459077 | Msa0824840:CDS |
| CATACCTGCACGTCTGATGG+AGG | 0.590917 | 5_3:-64457161 | None:intergenic |
| CGAACTAAAAGAGCTAGGGT+TGG | 0.592003 | 5_3:+64456993 | Msa0824840:CDS |
| TGGTCATTCGAAGACAACCC+AGG | 0.592494 | 5_3:-64455586 | None:intergenic |
| CTACATAAAGAGGTAATAGA+GGG | 0.601936 | 5_3:-64457038 | None:intergenic |
| GGAACTAGATGAGACGTTGG+TGG | 0.604691 | 5_3:-64458339 | None:intergenic |
| GGCACGAACTAAAAGAGCTA+GGG | 0.614763 | 5_3:+64456989 | Msa0824840:CDS |
| GCTTGTTGATCAATGATGCA+TGG | 0.616686 | 5_3:-64459038 | None:intergenic |
| TGCATGGTTTATGTAGCTTG+TGG | 0.616762 | 5_3:-64459022 | None:intergenic |
| TGACAACGTTCATATCTCAC+AGG | 0.621939 | 5_3:+64457109 | Msa0824840:CDS |
| GTTGCCCATGCTTTAGCAGT+GGG | 0.624509 | 5_3:-64458847 | None:intergenic |
| AAAGTTGAAGCGAAAGTGGG+TGG | 0.629808 | 5_3:+64455957 | Msa0824840:CDS |
| GATAGTGACCAGAGGATGGG+GGG | 0.629982 | 5_3:+64458489 | Msa0824840:CDS |
| ATACCTGCACGTCTGATGGA+GGG | 0.632758 | 5_3:-64457160 | None:intergenic |
| GATGATAGCAATGCTGCTCA+AGG | 0.637953 | 5_3:+64455979 | Msa0824840:CDS |
| GAGAAAGTTGAAGCGAAAGT+GGG | 0.641583 | 5_3:+64455954 | Msa0824840:CDS |
| AGAAGATTTGAGGAAAAGAG+AGG | 0.642608 | 5_3:+64455789 | Msa0824840:CDS |
| TGATAGTGACCAGAGGATGG+GGG | 0.647620 | 5_3:+64458488 | Msa0824840:CDS |
| TGTTGCCCATGCTTTAGCAG+TGG | 0.654029 | 5_3:-64458848 | None:intergenic |
| TTTGAAGCAAGAAAGGCCAA+GGG | 0.664841 | 5_3:+64458715 | Msa0824840:CDS |
| AAGGGCGAACCAGTCAATGT+CGG | 0.669594 | 5_3:+64458952 | Msa0824840:CDS |
| ATAAACCCAAAATCGAACCT+GGG | 0.669846 | 5_3:+64455569 | Msa0824840:CDS |
| AAAGGAACTAGATGAGACGT+TGG | 0.686332 | 5_3:-64458342 | None:intergenic |
| AAGTCTGACACATTTGAACA+CGG | 0.704591 | 5_3:-64458892 | None:intergenic |
| CAACGTTCATATCTCACAGG+AGG | 0.705255 | 5_3:+64457112 | Msa0824840:CDS |
| CAGGCAATGATAGTGACCAG+AGG | 0.712647 | 5_3:+64458481 | Msa0824840:CDS |
| ATGCACCTATAGTAGATGAG+CGG | 0.720441 | 5_3:+64457078 | Msa0824840:CDS |
| GGGAGAAGAACAGTTCGCTG+CGG | 0.724708 | 5_3:-64459001 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATATATTTCTTATCA+GGG | + | chr5_3:64456964-64456983 | Msa0824840:intron | 10.0% |
| !!! | TAAGTTATGTTTTAAAAAAT+GGG | + | chr5_3:64458057-64458076 | Msa0824840:intron | 10.0% |
| !!! | ATATTATGATTTTGAGTAAT+GGG | - | chr5_3:64456374-64456393 | None:intergenic | 15.0% |
| !! | TATTCAAAATGTAATTCATT+AGG | - | chr5_3:64456886-64456905 | None:intergenic | 15.0% |
| !!! | TAATGAATTACATTTTGAAT+AGG | + | chr5_3:64456885-64456904 | Msa0824840:intron | 15.0% |
| !! | CAATTAATATATTTCTTATC+AGG | + | chr5_3:64456963-64456982 | Msa0824840:intron | 15.0% |
| !!! | TTTTATTTGAGTTTTTGTTT+TGG | + | chr5_3:64457601-64457620 | Msa0824840:intron | 15.0% |
| !!! | GTAAGTTATGTTTTAAAAAA+TGG | + | chr5_3:64458056-64458075 | Msa0824840:intron | 15.0% |
| !! | AAGAAAGAAGAATAATGAAT+TGG | + | chr5_3:64455912-64455931 | Msa0824840:CDS | 20.0% |
| !! | GGAAAAAATGCATAATATAT+AGG | - | chr5_3:64456051-64456070 | None:intergenic | 20.0% |
| !! | CAACTTGATATATAAATTCA+TGG | - | chr5_3:64456200-64456219 | None:intergenic | 20.0% |
| !!! | CATATTATGATTTTGAGTAA+TGG | - | chr5_3:64456375-64456394 | None:intergenic | 20.0% |
| !! | ACATAAATTCATTTAGCATT+AGG | + | chr5_3:64456578-64456597 | Msa0824840:intron | 20.0% |
| !!! | ATGATTTATGATTTGTAGTT+GGG | - | chr5_3:64456648-64456667 | None:intergenic | 20.0% |
| !! | AGATTCAAATCAAATACATA+AGG | + | chr5_3:64456743-64456762 | Msa0824840:intron | 20.0% |
| !!! | TAAGGTCAGAAATTTTAAAT+GGG | - | chr5_3:64456850-64456869 | None:intergenic | 20.0% |
| !!! | TTAAGGTCAGAAATTTTAAA+TGG | - | chr5_3:64456851-64456870 | None:intergenic | 20.0% |
| !!! | TCAATTACATCTAGAATTAT+GGG | + | chr5_3:64457191-64457210 | Msa0824840:intron | 20.0% |
| !! | TAAATTTCTTCAATTCACTA+GGG | - | chr5_3:64457234-64457253 | None:intergenic | 20.0% |
| !!! | TGAGTTAATTACATTTTACA+GGG | - | chr5_3:64457267-64457286 | None:intergenic | 20.0% |
| !!! | ATGAGTTAATTACATTTTAC+AGG | - | chr5_3:64457268-64457287 | None:intergenic | 20.0% |
| !! | TAAGTTTATTCCAATTTCTA+TGG | + | chr5_3:64457830-64457849 | Msa0824840:intron | 20.0% |
| !!! | TTTATTACCATTTTTCCTAA+TGG | + | chr5_3:64457854-64457873 | Msa0824840:intron | 20.0% |
| !! | TTCAAAAAGAATAGTATATG+AGG | + | chr5_3:64457984-64458003 | Msa0824840:intron | 20.0% |
| !! | TAAAACATAACTTACTAACT+TGG | - | chr5_3:64458051-64458070 | None:intergenic | 20.0% |
| !!! | TTATGTTTTAAAAAATGGGT+AGG | + | chr5_3:64458061-64458080 | Msa0824840:intron | 20.0% |
| !!! | TATGTTTTAAAAAATGGGTA+GGG | + | chr5_3:64458062-64458081 | Msa0824840:intron | 20.0% |
| !! | TTAATCATTGTTGAATTTGT+TGG | + | chr5_3:64458102-64458121 | Msa0824840:intron | 20.0% |
| !!! | TAATCATTGTTGAATTTGTT+GGG | + | chr5_3:64458103-64458122 | Msa0824840:intron | 20.0% |
| !!! | TTGTAATTTTATTTGTGACT+AGG | + | chr5_3:64458183-64458202 | Msa0824840:intron | 20.0% |
| !!! | TTTTTATCTTTGCTTTGTTT+TGG | - | chr5_3:64458313-64458332 | None:intergenic | 20.0% |
| !! | AAACAAAGCAAAGATAAAAA+AGG | + | chr5_3:64458313-64458332 | Msa0824840:CDS | 20.0% |
| !!! | TTGATAATTTTCTCATGAAA+TGG | - | chr5_3:64458658-64458677 | None:intergenic | 20.0% |
| !! | TTTCATGAGAAAATTATCAA+TGG | + | chr5_3:64458658-64458677 | Msa0824840:CDS | 20.0% |
| !!! | AAAATTATCAATGGATTGTT+TGG | + | chr5_3:64458667-64458686 | Msa0824840:CDS | 20.0% |
| !!! | AAATTATCAATGGATTGTTT+GGG | + | chr5_3:64458668-64458687 | Msa0824840:CDS | 20.0% |
| ! | GAGTAATTATGAAACATTGT+TGG | + | chr5_3:64455840-64455859 | Msa0824840:CDS | 25.0% |
| ! | TAATTATGAAACATTGTTGG+AGG | + | chr5_3:64455843-64455862 | Msa0824840:CDS | 25.0% |
| !! | AAGAAAACTAGTTTAGTTGA+AGG | + | chr5_3:64455871-64455890 | Msa0824840:CDS | 25.0% |
| ! | CAATATTTATAAAGCAGCAT+TGG | - | chr5_3:64456072-64456091 | None:intergenic | 25.0% |
| ! | AATTCAATACAAGTGATGAT+CGG | + | chr5_3:64456092-64456111 | Msa0824840:intron | 25.0% |
| !! | TGCCATGGAAATATAATTTT+TGG | + | chr5_3:64456145-64456164 | Msa0824840:intron | 25.0% |
| ! | GTCCAAAAATTATATTTCCA+TGG | - | chr5_3:64456150-64456169 | None:intergenic | 25.0% |
| !!! | ATATAATTTTTGGACCAATG+AGG | + | chr5_3:64456155-64456174 | Msa0824840:intron | 25.0% |
| !!! | TATAATTTTTGGACCAATGA+GGG | + | chr5_3:64456156-64456175 | Msa0824840:intron | 25.0% |
| ! | ATGAATGTATAATGTGTTGT+TGG | + | chr5_3:64456226-64456245 | Msa0824840:intron | 25.0% |
| ! | TAGTTAGTCAATTGTTAGAA+GGG | - | chr5_3:64456528-64456547 | None:intergenic | 25.0% |
| !!! | TGTTCTTTGTTTTGTTTGAT+AGG | - | chr5_3:64456561-64456580 | None:intergenic | 25.0% |
| ! | CATTTAGCATTAGGTTATTA+TGG | + | chr5_3:64456587-64456606 | Msa0824840:intron | 25.0% |
| !! | TGATTTATGATTTGTAGTTG+GGG | - | chr5_3:64456647-64456666 | None:intergenic | 25.0% |
| !! | GATGATTTATGATTTGTAGT+TGG | - | chr5_3:64456649-64456668 | None:intergenic | 25.0% |
| !! | TTGATTTGAATCTCTTCTAT+AGG | - | chr5_3:64456736-64456755 | None:intergenic | 25.0% |
| ! | AATATATTTCTTATCAGGGA+CGG | + | chr5_3:64456968-64456987 | Msa0824840:intron | 25.0% |
| !! | CTCAATTACATCTAGAATTA+TGG | + | chr5_3:64457190-64457209 | Msa0824840:intron | 25.0% |
| ! | CTAAATTTCTTCAATTCACT+AGG | - | chr5_3:64457235-64457254 | None:intergenic | 25.0% |
| ! | GAATTGAAGAAATTTAGATG+TGG | + | chr5_3:64457238-64457257 | Msa0824840:intron | 25.0% |
| ! | TAAAAAAGAGGAAAAGAGAA+TGG | - | chr5_3:64457793-64457812 | None:intergenic | 25.0% |
| ! | AGAGAAATCTGATAAAAAAG+AGG | - | chr5_3:64457805-64457824 | None:intergenic | 25.0% |
| ! | GGTAATAAATCCATAGAAAT+TGG | - | chr5_3:64457843-64457862 | None:intergenic | 25.0% |
| ! | TATGAAGTGAAAAATGTCAA+AGG | - | chr5_3:64458363-64458382 | None:intergenic | 25.0% |
| !! | CATTTTTCACTTCATATCAT+TGG | + | chr5_3:64458367-64458386 | Msa0824840:CDS | 25.0% |
| !! | TTCTAACACAAACTTTTTGT+TGG | - | chr5_3:64458423-64458442 | None:intergenic | 25.0% |
| ! | TGTTAGAAAAAATTTCCAGT+TGG | + | chr5_3:64458435-64458454 | Msa0824840:intron | 25.0% |
| !!! | TCAGAAGAGTTAAGTTTTAT+TGG | - | chr5_3:64458820-64458839 | None:intergenic | 25.0% |
| !!! | TGTTTTTTCTATCCATTTCA+CGG | - | chr5_3:64459130-64459149 | None:intergenic | 25.0% |
| TTCGAATGACCATAAAAACT+TGG | + | chr5_3:64455597-64455616 | Msa0824840:CDS | 30.0% | |
| ! | TCATGTCTTCCAAGTTTTTA+TGG | - | chr5_3:64455609-64455628 | None:intergenic | 30.0% |
| ACAGTTTGATGAACTTGAAA+AGG | + | chr5_3:64455675-64455694 | Msa0824840:CDS | 30.0% | |
| TCTTCAAGAGAAGTTTGAAT+TGG | + | chr5_3:64455741-64455760 | Msa0824840:intron | 30.0% | |
| GAAGAATAATGAATTGGAGT+TGG | + | chr5_3:64455918-64455937 | Msa0824840:CDS | 30.0% | |
| ACAGGTAGAATTTGAAAGAA+AGG | - | chr5_3:64456260-64456279 | None:intergenic | 30.0% | |
| ! | TTGAGTAATGGGACTTAAAT+GGG | - | chr5_3:64456363-64456382 | None:intergenic | 30.0% |
| ! | TTTGAGTAATGGGACTTAAA+TGG | - | chr5_3:64456364-64456383 | None:intergenic | 30.0% |
| GTAGTTAGTCAATTGTTAGA+AGG | - | chr5_3:64456529-64456548 | None:intergenic | 30.0% | |
| GGGGATTTAATTCAGATTAA+AGG | - | chr5_3:64456628-64456647 | None:intergenic | 30.0% | |
| TTAGGTAAGAACAAGCATTA+AGG | - | chr5_3:64456868-64456887 | None:intergenic | 30.0% | |
| CTACATAAAGAGGTAATAGA+GGG | - | chr5_3:64457041-64457060 | None:intergenic | 30.0% | |
| CTCTATTACCTCTTTATGTA+GGG | + | chr5_3:64457040-64457059 | Msa0824840:CDS | 30.0% | |
| !!! | TTGAGTTTTTGTTTTGGTGT+TGG | + | chr5_3:64457607-64457626 | Msa0824840:intron | 30.0% |
| AGAATGAACTTCAAAAACTG+AGG | - | chr5_3:64457669-64457688 | None:intergenic | 30.0% | |
| TCTCAAACCATTAGGAAAAA+TGG | - | chr5_3:64457864-64457883 | None:intergenic | 30.0% | |
| !! | TTTGGATGAGATTTTGATGT+TGG | + | chr5_3:64457926-64457945 | Msa0824840:intron | 30.0% |
| ATAACTTACTAACTTGGTTG+TGG | - | chr5_3:64458045-64458064 | None:intergenic | 30.0% | |
| !!! | TTGTTCTTGACTGTTTTTGT+AGG | + | chr5_3:64458274-64458293 | Msa0824840:intron | 30.0% |
| !!! | ACTGTTTTTGTAGGAACAAA+TGG | + | chr5_3:64458283-64458302 | Msa0824840:intron | 30.0% |
| AGAAAAAATTTCCAGTTGGA+AGG | + | chr5_3:64458439-64458458 | Msa0824840:intron | 30.0% | |
| GAAAAAATTTCCAGTTGGAA+GGG | + | chr5_3:64458440-64458459 | Msa0824840:intron | 30.0% | |
| GTACAAATTCTCAGATATTC+AGG | + | chr5_3:64458462-64458481 | Msa0824840:CDS | 30.0% | |
| TTCTTTGCAAATGCATATCT+GGG | + | chr5_3:64458559-64458578 | Msa0824840:CDS | 30.0% | |
| TTATAGTTCCCATCTTCTTT+AGG | - | chr5_3:64458589-64458608 | None:intergenic | 30.0% | |
| !!! | AAATTCACTAGTTTTGTGAG+AGG | + | chr5_3:64458622-64458641 | Msa0824840:CDS | 30.0% |
| !!! | AATTCACTAGTTTTGTGAGA+GGG | + | chr5_3:64458623-64458642 | Msa0824840:CDS | 30.0% |
| ! | TTGATAACTGCAATCCTTAA+GGG | + | chr5_3:64458934-64458953 | Msa0824840:CDS | 30.0% |
| ! | CAATTTCCTCATTCTTTTCA+GGG | - | chr5_3:64459086-64459105 | None:intergenic | 30.0% |
| ! | ACAATTTCCTCATTCTTTTC+AGG | - | chr5_3:64459087-64459106 | None:intergenic | 30.0% |
| ATAAACCCAAAATCGAACCT+GGG | + | chr5_3:64455569-64455588 | Msa0824840:CDS | 35.0% | |
| TTGAATTGGAGAGACTAATG+AGG | + | chr5_3:64455755-64455774 | Msa0824840:intron | 35.0% | |
| TTCAAGCTGAAGAAGATTTG+AGG | + | chr5_3:64455779-64455798 | Msa0824840:CDS | 35.0% | |
| AGAAGATTTGAGGAAAAGAG+AGG | + | chr5_3:64455789-64455808 | Msa0824840:CDS | 35.0% | |
| TTAGTTGAAGGAGACATTGT+TGG | + | chr5_3:64455883-64455902 | Msa0824840:CDS | 35.0% | |
| !! | GATTTTTCAATAGCTTGCCA+TGG | + | chr5_3:64456130-64456149 | Msa0824840:intron | 35.0% |
| CTAAGAACAAATACCCTCAT+TGG | - | chr5_3:64456172-64456191 | None:intergenic | 35.0% | |
| TACACACAAATATTCACACG+CGG | - | chr5_3:64456293-64456312 | None:intergenic | 35.0% | |
| TGTGTGTAATTATGTCCCTT+TGG | + | chr5_3:64456305-64456324 | Msa0824840:intron | 35.0% | |
| ACGTTGAAGGAGATTTAAGA+AGG | + | chr5_3:64456467-64456486 | Msa0824840:intron | 35.0% | |
| TTGAAGGAGATTTAAGAAGG+AGG | + | chr5_3:64456470-64456489 | Msa0824840:intron | 35.0% | |
| GATTAAAGGCTATCTTGTCT+AGG | - | chr5_3:64456614-64456633 | None:intergenic | 35.0% | |
| !! | TTTTCATGAGTGTTGTGGAT+GGG | - | chr5_3:64456785-64456804 | None:intergenic | 35.0% |
| !! | ATTTTCATGAGTGTTGTGGA+TGG | - | chr5_3:64456786-64456805 | None:intergenic | 35.0% |
| !! | ATGGATTTTCATGAGTGTTG+TGG | - | chr5_3:64456790-64456809 | None:intergenic | 35.0% |
| ACTTCTAGACTGCATAAGAA+TGG | - | chr5_3:64456809-64456828 | None:intergenic | 35.0% | |
| CCTACATAAAGAGGTAATAG+AGG | - | chr5_3:64457042-64457061 | None:intergenic | 35.0% | |
| CCTCTATTACCTCTTTATGT+AGG | + | chr5_3:64457039-64457058 | Msa0824840:CDS | 35.0% | |
| AATTGCAAGTCATACTGAAC+TGG | + | chr5_3:64457404-64457423 | Msa0824840:intron | 35.0% | |
| ATTGCAAGTCATACTGAACT+GGG | + | chr5_3:64457405-64457424 | Msa0824840:intron | 35.0% | |
| CAAAATCTCATCCAAACTGT+GGG | - | chr5_3:64457922-64457941 | None:intergenic | 35.0% | |
| TCAAAATCTCATCCAAACTG+TGG | - | chr5_3:64457923-64457942 | None:intergenic | 35.0% | |
| ! | ATGTTGGTTGTCGTGATTAT+GGG | + | chr5_3:64457942-64457961 | Msa0824840:intron | 35.0% |
| GTTATGCATCCAACTATTTC+AGG | + | chr5_3:64458014-64458033 | Msa0824840:intron | 35.0% | |
| ATAGGTCCTTGTTCTAACTT+TGG | + | chr5_3:64458238-64458257 | Msa0824840:intron | 35.0% | |
| TAGCATCCAAAGTTAGAACA+AGG | - | chr5_3:64458247-64458266 | None:intergenic | 35.0% | |
| TCTGACAACATTTGCAAAAG+AGG | + | chr5_3:64458513-64458532 | Msa0824840:CDS | 35.0% | |
| GTTCTTTGCAAATGCATATC+TGG | + | chr5_3:64458558-64458577 | Msa0824840:CDS | 35.0% | |
| ! | GTGTTCATTTGAAGCAAGAA+AGG | + | chr5_3:64458708-64458727 | Msa0824840:CDS | 35.0% |
| ATGATCAATGTTAGATCCCT+TGG | - | chr5_3:64458734-64458753 | None:intergenic | 35.0% | |
| ATCTTTCTTCCTAACCCAAT+CGG | - | chr5_3:64458791-64458810 | None:intergenic | 35.0% | |
| AAGTCTGACACATTTGAACA+CGG | - | chr5_3:64458895-64458914 | None:intergenic | 35.0% | |
| ! | TATCAAGGTTGCTTTCTGAA+GGG | - | chr5_3:64458920-64458939 | None:intergenic | 35.0% |
| ! | TTATCAAGGTTGCTTTCTGA+AGG | - | chr5_3:64458921-64458940 | None:intergenic | 35.0% |
| CTTAAGGATTGCAGTTATCA+AGG | - | chr5_3:64458935-64458954 | None:intergenic | 35.0% | |
| ! | CTTGATAACTGCAATCCTTA+AGG | + | chr5_3:64458933-64458952 | Msa0824840:CDS | 35.0% |
| ! | TGATCAACAAGCTTTGTGAA+AGG | + | chr5_3:64459049-64459068 | Msa0824840:CDS | 35.0% |
| ! | GATCAACAAGCTTTGTGAAA+GGG | + | chr5_3:64459050-64459069 | Msa0824840:CDS | 35.0% |
| CATAAACCCAAAATCGAACC+TGG | + | chr5_3:64455568-64455587 | Msa0824840:CDS | 40.0% | |
| ! | GAGCATTCAGGAACTTGTTT+CGG | + | chr5_3:64455627-64455646 | Msa0824840:CDS | 40.0% |
| TGAGAAAGTTGAAGCGAAAG+TGG | + | chr5_3:64455953-64455972 | Msa0824840:CDS | 40.0% | |
| GAGAAAGTTGAAGCGAAAGT+GGG | + | chr5_3:64455954-64455973 | Msa0824840:CDS | 40.0% | |
| ! | ATCGAACAAGTTGGACCAAA+GGG | - | chr5_3:64456323-64456342 | None:intergenic | 40.0% |
| ! | AATCGAACAAGTTGGACCAA+AGG | - | chr5_3:64456324-64456343 | None:intergenic | 40.0% |
| ! | TTTGGTCCAACTTGTTCGAT+TGG | + | chr5_3:64456323-64456342 | Msa0824840:intron | 40.0% |
| AATGGGACTTAAATGGGAAC+AGG | - | chr5_3:64456357-64456376 | None:intergenic | 40.0% | |
| TAGTTTCCGGGAATCAAATC+CGG | - | chr5_3:64456498-64456517 | None:intergenic | 40.0% | |
| ! | AAGGGAGAATGTTAGTTTCC+GGG | - | chr5_3:64456510-64456529 | None:intergenic | 40.0% |
| ! | GAAGGGAGAATGTTAGTTTC+CGG | - | chr5_3:64456511-64456530 | None:intergenic | 40.0% |
| TCATCCTAAGAGTGATGAGT+CGG | + | chr5_3:64456664-64456683 | Msa0824840:intron | 40.0% | |
| GAACTAAAAGAGCTAGGGTT+GGG | + | chr5_3:64456994-64457013 | Msa0824840:CDS | 40.0% | |
| AACTAAAAGAGCTAGGGTTG+GGG | + | chr5_3:64456995-64457014 | Msa0824840:CDS | 40.0% | |
| ATGCACCTATAGTAGATGAG+CGG | + | chr5_3:64457078-64457097 | Msa0824840:CDS | 40.0% | |
| TGACAACGTTCATATCTCAC+AGG | + | chr5_3:64457109-64457128 | Msa0824840:CDS | 40.0% | |
| TTGCAAGTCATACTGAACTG+GGG | + | chr5_3:64457406-64457425 | Msa0824840:intron | 40.0% | |
| !! | TTACTTGTTCCGTACTGACT+TGG | + | chr5_3:64457498-64457517 | Msa0824840:intron | 40.0% |
| TGTGTACTAAGCATGCAAAG+AGG | - | chr5_3:64457537-64457556 | None:intergenic | 40.0% | |
| CTTTCAGCTCTCAAACCATT+AGG | - | chr5_3:64457872-64457891 | None:intergenic | 40.0% | |
| TTTCTTTCCTTCCCACAGTT+TGG | + | chr5_3:64457908-64457927 | Msa0824840:intron | 40.0% | |
| ! | GATGTTGGTTGTCGTGATTA+TGG | + | chr5_3:64457941-64457960 | Msa0824840:intron | 40.0% |
| GCATCCAACTATTTCAGGAA+AGG | + | chr5_3:64458019-64458038 | Msa0824840:intron | 40.0% | |
| GATGCACGAGTATGATGAAA+TGG | + | chr5_3:64458159-64458178 | Msa0824840:intron | 40.0% | |
| ACTAGGCATGCTTGTGTTAA+GGG | + | chr5_3:64458200-64458219 | Msa0824840:intron | 40.0% | |
| AAAGGAACTAGATGAGACGT+TGG | - | chr5_3:64458345-64458364 | None:intergenic | 40.0% | |
| ACTTCGAATAGTGCTCTTGA+TGG | - | chr5_3:64458394-64458413 | None:intergenic | 40.0% | |
| ! | AGAGCACTATTCGAAGTTTC+TGG | + | chr5_3:64458397-64458416 | Msa0824840:CDS | 40.0% |
| AGAATTTGTACCCTTCCAAC+TGG | - | chr5_3:64458453-64458472 | None:intergenic | 40.0% | |
| ! | AATGATAGTGACCAGAGGAT+GGG | + | chr5_3:64458486-64458505 | Msa0824840:CDS | 40.0% |
| TAGTTCCCATCTTCTTTAGG+AGG | - | chr5_3:64458586-64458605 | None:intergenic | 40.0% | |
| !!! | TAGTTTTGTGAGAGGGAAGA+AGG | + | chr5_3:64458630-64458649 | Msa0824840:CDS | 40.0% |
| ! | ATTTGAAGCAAGAAAGGCCA+AGG | + | chr5_3:64458714-64458733 | Msa0824840:CDS | 40.0% |
| ! | TTTGAAGCAAGAAAGGCCAA+GGG | + | chr5_3:64458715-64458734 | Msa0824840:CDS | 40.0% |
| GGGATCTAACATTGATCATC+AGG | + | chr5_3:64458735-64458754 | Msa0824840:CDS | 40.0% | |
| AGATTCTTAGTACTCTGTGC+AGG | + | chr5_3:64458758-64458777 | Msa0824840:CDS | 40.0% | |
| ! | GATTGGGTTAGGAAGAAAGA+TGG | + | chr5_3:64458790-64458809 | Msa0824840:CDS | 40.0% |
| ! | ATCAAGGTTGCTTTCTGAAG+GGG | - | chr5_3:64458919-64458938 | None:intergenic | 40.0% |
| ! | GAAGGTCATTTGCTAGGAAA+CGG | - | chr5_3:64458978-64458997 | None:intergenic | 40.0% |
| GTTTCCTAGCAAATGACCTT+CGG | + | chr5_3:64458977-64458996 | Msa0824840:CDS | 40.0% | |
| TTTCCTAGCAAATGACCTTC+GGG | + | chr5_3:64458978-64458997 | Msa0824840:CDS | 40.0% | |
| ! | GCATGGTTTATGTAGCTTGT+GGG | - | chr5_3:64459024-64459043 | None:intergenic | 40.0% |
| TGCATGGTTTATGTAGCTTG+TGG | - | chr5_3:64459025-64459044 | None:intergenic | 40.0% | |
| ! | GCTTGTTGATCAATGATGCA+TGG | - | chr5_3:64459041-64459060 | None:intergenic | 40.0% |
| GATGTACCCTGAAAAGAATG+AGG | + | chr5_3:64459077-64459096 | Msa0824840:CDS | 40.0% | |
| ! | GACAACCCAGGTTCGATTTT+GGG | - | chr5_3:64455577-64455596 | None:intergenic | 45.0% |
| ! | AGACAACCCAGGTTCGATTT+TGG | - | chr5_3:64455578-64455597 | None:intergenic | 45.0% |
| CTTGGAAGACATGAGCATTC+AGG | + | chr5_3:64455615-64455634 | Msa0824840:CDS | 45.0% | |
| AGCTATGCGAAAGAGGGAAA+AGG | + | chr5_3:64455812-64455831 | Msa0824840:CDS | 45.0% | |
| GCTATGCGAAAGAGGGAAAA+GGG | + | chr5_3:64455813-64455832 | Msa0824840:CDS | 45.0% | |
| AAAGTTGAAGCGAAAGTGGG+TGG | + | chr5_3:64455957-64455976 | Msa0824840:CDS | 45.0% | |
| GATGATAGCAATGCTGCTCA+AGG | + | chr5_3:64455979-64455998 | Msa0824840:CDS | 45.0% | |
| GCTCAAGGTGAATCATCATC+TGG | + | chr5_3:64455994-64456013 | Msa0824840:CDS | 45.0% | |
| CAATCGCCAATCGAACAAGT+TGG | - | chr5_3:64456332-64456351 | None:intergenic | 45.0% | |
| ! | CAACTTGTTCGATTGGCGAT+TGG | + | chr5_3:64456330-64456349 | Msa0824840:intron | 45.0% |
| AGATAAACACTTCCCCGCAT+AGG | + | chr5_3:64456421-64456440 | Msa0824840:intron | 45.0% | |
| TAGCTCGGTTGTTGAGCTAA+AGG | + | chr5_3:64456444-64456463 | Msa0824840:intron | 45.0% | |
| GTTGAGCTAAAGGACGTTGA+AGG | + | chr5_3:64456454-64456473 | Msa0824840:intron | 45.0% | |
| GAGATTTAAGAAGGAGGTCC+CGG | + | chr5_3:64456476-64456495 | Msa0824840:intron | 45.0% | |
| AGTTTCCGGGAATCAAATCC+GGG | - | chr5_3:64456497-64456516 | None:intergenic | 45.0% | |
| TTCTCCGACTCATCACTCTT+AGG | - | chr5_3:64456671-64456690 | None:intergenic | 45.0% | |
| GGCACGAACTAAAAGAGCTA+GGG | + | chr5_3:64456989-64457008 | Msa0824840:CDS | 45.0% | |
| CGAACTAAAAGAGCTAGGGT+TGG | + | chr5_3:64456993-64457012 | Msa0824840:CDS | 45.0% | |
| AGAGGGTTCACGTCCAAAAT+GGG | - | chr5_3:64457024-64457043 | None:intergenic | 45.0% | |
| TAGAGGGTTCACGTCCAAAA+TGG | - | chr5_3:64457025-64457044 | None:intergenic | 45.0% | |
| TCTTGCCGCTCATCTACTAT+AGG | - | chr5_3:64457086-64457105 | None:intergenic | 45.0% | |
| CAACGTTCATATCTCACAGG+AGG | + | chr5_3:64457112-64457131 | Msa0824840:CDS | 45.0% | |
| !! | AGAATGAGGCCAAAAGCGTT+TGG | - | chr5_3:64457459-64457478 | None:intergenic | 45.0% |
| ! | AAACGCTTTTGGCCTCATTC+TGG | + | chr5_3:64457458-64457477 | Msa0824840:intron | 45.0% |
| CAGTTAAGCACTCCAGAATG+AGG | - | chr5_3:64457473-64457492 | None:intergenic | 45.0% | |
| TGCATGCTTAGTACACATGC+TGG | + | chr5_3:64457540-64457559 | Msa0824840:intron | 45.0% | |
| !! | TGCAGTGTAGTTGGTGATTG+AGG | + | chr5_3:64457573-64457592 | Msa0824840:intron | 45.0% |
| !! | AGTGTAGTTGGTGATTGAGG+TGG | + | chr5_3:64457576-64457595 | Msa0824840:intron | 45.0% |
| AGGCTTTGCATAAGAGAGGA+AGG | - | chr5_3:64457714-64457733 | None:intergenic | 45.0% | |
| GAGAAGGCTTTGCATAAGAG+AGG | - | chr5_3:64457718-64457737 | None:intergenic | 45.0% | |
| GAGAATGGTTGTGCGACATT+GGG | - | chr5_3:64457778-64457797 | None:intergenic | 45.0% | |
| AGAGAATGGTTGTGCGACAT+TGG | - | chr5_3:64457779-64457798 | None:intergenic | 45.0% | |
| ATCTCATCCAAACTGTGGGA+AGG | - | chr5_3:64457918-64457937 | None:intergenic | 45.0% | |
| GTTGTCGTGATTATGGGTAC+TGG | + | chr5_3:64457948-64457967 | Msa0824840:intron | 45.0% | |
| GTGGCCTTTCCTGAAATAGT+TGG | - | chr5_3:64458026-64458045 | None:intergenic | 45.0% | |
| GACTAGGCATGCTTGTGTTA+AGG | + | chr5_3:64458199-64458218 | Msa0824840:intron | 45.0% | |
| CTAGGCATGCTTGTGTTAAG+GGG | + | chr5_3:64458201-64458220 | Msa0824840:intron | 45.0% | |
| GGGGATGGTTACTTGTTCAT+AGG | + | chr5_3:64458220-64458239 | Msa0824840:intron | 45.0% | |
| ! | CAATGATAGTGACCAGAGGA+TGG | + | chr5_3:64458485-64458504 | Msa0824840:CDS | 45.0% |
| ! | ATGATAGTGACCAGAGGATG+GGG | + | chr5_3:64458487-64458506 | Msa0824840:CDS | 45.0% |
| TGGGTCCTCCTAAAGAAGAT+GGG | + | chr5_3:64458578-64458597 | Msa0824840:CDS | 45.0% | |
| CACATTTGAACACGGAAGCA+AGG | - | chr5_3:64458887-64458906 | None:intergenic | 45.0% | |
| ! | ACAAGCTTTGTGAAAGGGTG+AGG | + | chr5_3:64459055-64459074 | Msa0824840:CDS | 45.0% |
| TCTATCCATTTCACGGTGAC+TGG | - | chr5_3:64459123-64459142 | None:intergenic | 45.0% | |
| TGGTCATTCGAAGACAACCC+AGG | - | chr5_3:64455589-64455608 | None:intergenic | 50.0% | |
| AGAGAGGAGCTATGCGAAAG+AGG | + | chr5_3:64455805-64455824 | Msa0824840:CDS | 50.0% | |
| GAGAGGAGCTATGCGAAAGA+GGG | + | chr5_3:64455806-64455825 | Msa0824840:CDS | 50.0% | |
| ACACGCGGTATACACACTAC+AGG | - | chr5_3:64456278-64456297 | None:intergenic | 50.0% | |
| AACAACCGAGCTACCTATGC+GGG | - | chr5_3:64456437-64456456 | None:intergenic | 50.0% | |
| CAACAACCGAGCTACCTATG+CGG | - | chr5_3:64456438-64456457 | None:intergenic | 50.0% | |
| CGGCACGAACTAAAAGAGCT+AGG | + | chr5_3:64456988-64457007 | Msa0824840:CDS | 50.0% | |
| TGCACGCTCCCTACATAAAG+AGG | - | chr5_3:64457051-64457070 | None:intergenic | 50.0% | |
| ATACCTGCACGTCTGATGGA+GGG | - | chr5_3:64457163-64457182 | None:intergenic | 50.0% | |
| CATCATACCTGCACGTCTGA+TGG | - | chr5_3:64457167-64457186 | None:intergenic | 50.0% | |
| !! | TGCAAAGAGGCACTCCAATG+CGG | - | chr5_3:64457524-64457543 | None:intergenic | 50.0% |
| !!! | TTGTTTTGGTGTTGGAGCGC+AGG | + | chr5_3:64457615-64457634 | Msa0824840:intron | 50.0% |
| ! | ATCTTTGCCTGGGTTGAGGA+GGG | - | chr5_3:64457740-64457759 | None:intergenic | 50.0% |
| ! | AATCTTTGCCTGGGTTGAGG+AGG | - | chr5_3:64457741-64457760 | None:intergenic | 50.0% |
| CAGAATCTTTGCCTGGGTTG+AGG | - | chr5_3:64457744-64457763 | None:intergenic | 50.0% | |
| GGTGGTCAGAATCTTTGCCT+GGG | - | chr5_3:64457750-64457769 | None:intergenic | 50.0% | |
| AGGTGGTCAGAATCTTTGCC+TGG | - | chr5_3:64457751-64457770 | None:intergenic | 50.0% | |
| GCATGCTTGTGTTAAGGGGA+TGG | + | chr5_3:64458205-64458224 | Msa0824840:intron | 50.0% | |
| GGAACTAGATGAGACGTTGG+TGG | - | chr5_3:64458342-64458361 | None:intergenic | 50.0% | |
| ! | CAGGCAATGATAGTGACCAG+AGG | + | chr5_3:64458481-64458500 | Msa0824840:CDS | 50.0% |
| ! | TGATAGTGACCAGAGGATGG+GGG | + | chr5_3:64458488-64458507 | Msa0824840:CDS | 50.0% |
| CTGGGTCCTCCTAAAGAAGA+TGG | + | chr5_3:64458577-64458596 | Msa0824840:CDS | 50.0% | |
| ATGCTTTAGCAGTGGGTGTC+AGG | - | chr5_3:64458843-64458862 | None:intergenic | 50.0% | |
| TGACACCCACTGCTAAAGCA+TGG | + | chr5_3:64458842-64458861 | Msa0824840:CDS | 50.0% | |
| GACACCCACTGCTAAAGCAT+GGG | + | chr5_3:64458843-64458862 | Msa0824840:CDS | 50.0% | |
| GTTGCCCATGCTTTAGCAGT+GGG | - | chr5_3:64458850-64458869 | None:intergenic | 50.0% | |
| TGTTGCCCATGCTTTAGCAG+TGG | - | chr5_3:64458851-64458870 | None:intergenic | 50.0% | |
| !! | CATTGACTGGTTCGCCCTTA+AGG | - | chr5_3:64458951-64458970 | None:intergenic | 50.0% |
| AAGGGCGAACCAGTCAATGT+CGG | + | chr5_3:64458952-64458971 | Msa0824840:CDS | 50.0% | |
| !! | TTCACGGTGACTGGTCTAGA+TGG | - | chr5_3:64459114-64459133 | None:intergenic | 50.0% |
| CTAGACCAGTCACCGTGAAA+TGG | + | chr5_3:64459115-64459134 | Msa0824840:CDS | 50.0% | |
| ACTTCCCCGCATAGGTAGCT+CGG | + | chr5_3:64456429-64456448 | Msa0824840:intron | 55.0% | |
| ACAACCGAGCTACCTATGCG+GGG | - | chr5_3:64456436-64456455 | None:intergenic | 55.0% | |
| GAGGTCCCGGATTTGATTCC+CGG | + | chr5_3:64456489-64456508 | Msa0824840:intron | 55.0% | |
| ! | AGGGTTGGGGTTGCCCATTT+TGG | + | chr5_3:64457008-64457027 | Msa0824840:CDS | 55.0% |
| CATACCTGCACGTCTGATGG+AGG | - | chr5_3:64457164-64457183 | None:intergenic | 55.0% | |
| ! | GGGCACGTTCCAAACGCTTT+TGG | + | chr5_3:64457447-64457466 | Msa0824840:intron | 55.0% |
| CCAATGCGGCCAAGTCAGTA+CGG | - | chr5_3:64457510-64457529 | None:intergenic | 55.0% | |
| !!! | TTTTGGTGTTGGAGCGCAGG+AGG | + | chr5_3:64457618-64457637 | Msa0824840:intron | 55.0% |
| !! | TTTGGTGTTGGAGCGCAGGA+GGG | + | chr5_3:64457619-64457638 | Msa0824840:intron | 55.0% |
| GTTGTGCGACATTGGGCATG+AGG | - | chr5_3:64457771-64457790 | None:intergenic | 55.0% | |
| GATAGTGACCAGAGGATGGG+GGG | + | chr5_3:64458489-64458508 | Msa0824840:CDS | 55.0% | |
| TTCCTAACCCAATCGGCCTC+GGG | - | chr5_3:64458784-64458803 | None:intergenic | 55.0% | |
| CTTCCTAACCCAATCGGCCT+CGG | - | chr5_3:64458785-64458804 | None:intergenic | 55.0% | |
| AGGAAACGGCCGACATTGAC+TGG | - | chr5_3:64458964-64458983 | None:intergenic | 55.0% | |
| GGGAGAAGAACAGTTCGCTG+CGG | - | chr5_3:64459004-64459023 | None:intergenic | 55.0% | |
| !! | CGGTGTCGCGTACAGCGTTT+CGG | + | chr5_3:64455647-64455666 | Msa0824840:CDS | 60.0% |
| TGTCCCTCCATCAGACGTGC+AGG | + | chr5_3:64457157-64457176 | Msa0824840:CDS | 60.0% | |
| GGCTTCCACCTGTGCGCTTA+GGG | + | chr5_3:64457427-64457446 | Msa0824840:intron | 60.0% | |
| !! | CCGTACTGACTTGGCCGCAT+TGG | + | chr5_3:64457507-64457526 | Msa0824840:intron | 60.0% |
| CGCGCTGAGTGCAGTGTAGT+TGG | + | chr5_3:64457564-64457583 | Msa0824840:intron | 60.0% | |
| GTGCGACATTGGGCATGAGG+TGG | - | chr5_3:64457768-64457787 | None:intergenic | 60.0% | |
| TGTCAGATCCCCCCATCCTC+TGG | - | chr5_3:64458500-64458519 | None:intergenic | 60.0% | |
| TAGTACTCTGTGCAGGCCCG+AGG | + | chr5_3:64458765-64458784 | Msa0824840:CDS | 60.0% | |
| CGGCCCGAAGGTCATTTGCT+AGG | - | chr5_3:64458984-64459003 | None:intergenic | 60.0% | |
| GGGCTTCCACCTGTGCGCTT+AGG | + | chr5_3:64457426-64457445 | Msa0824840:intron | 65.0% | |
| ACGTGCCCTAAGCGCACAGG+TGG | - | chr5_3:64457435-64457454 | None:intergenic | 65.0% | |
| GGAACGTGCCCTAAGCGCAC+AGG | - | chr5_3:64457438-64457457 | None:intergenic | 65.0% | |
| GCCTTCTCCCTCCTCAACCC+AGG | + | chr5_3:64457730-64457749 | Msa0824840:intron | 65.0% | |
| ! | GCCTGGGTTGAGGAGGGAGA+AGG | - | chr5_3:64457734-64457753 | None:intergenic | 65.0% |
| AACAGTTCGCTGCGGCCCGA+AGG | - | chr5_3:64458996-64459015 | None:intergenic | 65.0% | |
| CGCGCTGGGGTTCTGCTGCA+TGG | + | chr5_3:64457643-64457662 | Msa0824840:intron | 70.0% | |
| TGTGCAGGCCCGAGGCCGAT+TGG | + | chr5_3:64458773-64458792 | Msa0824840:CDS | 70.0% | |
| GTGCAGGCCCGAGGCCGATT+GGG | + | chr5_3:64458774-64458793 | Msa0824840:CDS | 70.0% | |
| GGCCCGAGGCCGATTGGGTT+AGG | + | chr5_3:64458779-64458798 | Msa0824840:CDS | 70.0% | |
| GAGCGCAGGAGGGACGCGCT+GGG | + | chr5_3:64457629-64457648 | Msa0824840:intron | 75.0% | |
| AGCGCAGGAGGGACGCGCTG+GGG | + | chr5_3:64457630-64457649 | Msa0824840:intron | 75.0% | |
| ! | GGAGCGCAGGAGGGACGCGC+TGG | + | chr5_3:64457628-64457647 | Msa0824840:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 64455562 | 64459164 | 64455562 | ID=Msa0824840;Name=Msa0824840 |
| chr5_3 | mRNA | 64455562 | 64459164 | 64455562 | ID=Msa0824840-mRNA-1;Parent=Msa0824840;Name=Msa0824840-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.25|0|1|0.5|0.4|5|0|490 |
| chr5_3 | exon | 64455562 | 64455752 | 64455562 | ID=Msa0824840-mRNA-1:exon:20081;Parent=Msa0824840-mRNA-1 |
| chr5_3 | exon | 64455777 | 64456015 | 64455777 | ID=Msa0824840-mRNA-1:exon:20082;Parent=Msa0824840-mRNA-1 |
| chr5_3 | exon | 64456985 | 64457178 | 64456985 | ID=Msa0824840-mRNA-1:exon:20083;Parent=Msa0824840-mRNA-1 |
| chr5_3 | exon | 64458296 | 64458433 | 64458296 | ID=Msa0824840-mRNA-1:exon:20084;Parent=Msa0824840-mRNA-1 |
| chr5_3 | exon | 64458454 | 64459164 | 64458454 | ID=Msa0824840-mRNA-1:exon:20085;Parent=Msa0824840-mRNA-1 |
| chr5_3 | CDS | 64455562 | 64455752 | 64455562 | ID=Msa0824840-mRNA-1:cds;Parent=Msa0824840-mRNA-1 |
| chr5_3 | CDS | 64455777 | 64456015 | 64455777 | ID=Msa0824840-mRNA-1:cds;Parent=Msa0824840-mRNA-1 |
| chr5_3 | CDS | 64456985 | 64457178 | 64456985 | ID=Msa0824840-mRNA-1:cds;Parent=Msa0824840-mRNA-1 |
| chr5_3 | CDS | 64458296 | 64458433 | 64458296 | ID=Msa0824840-mRNA-1:cds;Parent=Msa0824840-mRNA-1 |
| chr5_3 | CDS | 64458454 | 64459164 | 64458454 | ID=Msa0824840-mRNA-1:cds;Parent=Msa0824840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
