Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168650 | XP_003590588.1 | 93.252 | 489 | 24 | 3 | 1 | 484 | 1 | 485 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168650 | sp|Q8W4K5|VAB_ARATH | 60.243 | 493 | 170 | 12 | 7 | 484 | 11 | 492 | 5.79e-156 | 455 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168650 | G7IDK3 | 93.252 | 489 | 24 | 3 | 1 | 484 | 1 | 485 | 0.0 | 756 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa0168650 | 0.806964 | 6.368358e-50 | -8.615850e-47 |
| Msa0017510 | Msa0168650 | 0.822610 | 2.160130e-53 | -8.615850e-47 |
| Msa0024550 | Msa0168650 | 0.801875 | 7.323615e-49 | -8.615850e-47 |
| Msa0076250 | Msa0168650 | 0.851825 | 6.895633e-61 | -8.615850e-47 |
| Msa0110970 | Msa0168650 | 0.808211 | 3.461945e-50 | -8.615850e-47 |
| Msa0120400 | Msa0168650 | 0.808414 | 3.133870e-50 | -8.615850e-47 |
| Msa0124280 | Msa0168650 | 0.836187 | 1.084070e-56 | -8.615850e-47 |
| Msa0140780 | Msa0168650 | 0.807129 | 5.876140e-50 | -8.615850e-47 |
| Msa0157290 | Msa0168650 | 0.823521 | 1.324760e-53 | -8.615850e-47 |
| Msa0168500 | Msa0168650 | 0.801830 | 7.483547e-49 | -8.615850e-47 |
| Msa0168650 | Msa0197420 | 0.805209 | 1.490483e-49 | -8.615850e-47 |
| Msa0168650 | Msa0197930 | 0.813972 | 1.952361e-51 | -8.615850e-47 |
| Msa0168650 | Msa0200260 | 0.815546 | 8.747521e-52 | -8.615850e-47 |
| Msa0168650 | Msa0230740 | 0.810552 | 1.089222e-50 | -8.615850e-47 |
| Msa0168650 | Msa0230750 | 0.803272 | 3.772997e-49 | -8.615850e-47 |
| Msa0168650 | Msa0243100 | 0.827209 | 1.774738e-54 | -8.615850e-47 |
| Msa0168650 | Msa0261340 | 0.825866 | 3.711167e-54 | -8.615850e-47 |
| Msa0168650 | Msa0277180 | 0.801040 | 1.085877e-48 | -8.615850e-47 |
| Msa0168650 | Msa0287650 | 0.826819 | 2.201047e-54 | -8.615850e-47 |
| Msa0168650 | Msa0300270 | 0.822439 | 2.367870e-53 | -8.615850e-47 |
| Msa0168650 | Msa0300320 | 0.800639 | 1.311583e-48 | -8.615850e-47 |
| Msa0168650 | Msa0316810 | 0.809449 | 1.882360e-50 | -8.615850e-47 |
| Msa0168650 | Msa0339490 | 0.801968 | 7.010857e-49 | -8.615850e-47 |
| Msa0168650 | Msa0344570 | 0.817954 | 2.522360e-52 | -8.615850e-47 |
| Msa0168650 | Msa0363070 | 0.808770 | 2.631191e-50 | -8.615850e-47 |
| Msa0168650 | Msa0376350 | 0.801736 | 7.822587e-49 | -8.615850e-47 |
| Msa0168650 | Msa0378720 | 0.801944 | 7.090845e-49 | -8.615850e-47 |
| Msa0168650 | Msa0385390 | 0.807232 | 5.587928e-50 | -8.615850e-47 |
| Msa0168650 | Msa0392420 | 0.813575 | 2.387561e-51 | -8.615850e-47 |
| Msa0168650 | Msa0392460 | 0.809144 | 2.187830e-50 | -8.615850e-47 |
| Msa0168650 | Msa0392490 | 0.825925 | 3.593107e-54 | -8.615850e-47 |
| Msa0168650 | Msa0415320 | 0.807108 | 5.938093e-50 | -8.615850e-47 |
| Msa0168650 | Msa0417880 | 0.825422 | 4.728446e-54 | -8.615850e-47 |
| Msa0168650 | Msa0424790 | 0.800671 | 1.291934e-48 | -8.615850e-47 |
| Msa0168650 | Msa0450720 | 0.802984 | 4.327475e-49 | -8.615850e-47 |
| Msa0168650 | Msa0467430 | 0.803189 | 3.925989e-49 | -8.615850e-47 |
| Msa0168650 | Msa0475790 | 0.825995 | 3.458297e-54 | -8.615850e-47 |
| Msa0168650 | Msa0479170 | 0.802636 | 5.107920e-49 | -8.615850e-47 |
| Msa0168650 | Msa0487570 | 0.819307 | 1.243834e-52 | -8.615850e-47 |
| Msa0168650 | Msa0487630 | 0.833816 | 4.290450e-56 | -8.615850e-47 |
| Msa0168650 | Msa0535040 | 0.800506 | 1.395648e-48 | -8.615850e-47 |
| Msa0168650 | Msa0546500 | 0.820643 | 6.153950e-53 | -8.615850e-47 |
| Msa0168650 | Msa0574890 | 0.802117 | 6.532497e-49 | -8.615850e-47 |
| Msa0168650 | Msa0643080 | 0.837735 | 4.361030e-57 | -8.615850e-47 |
| Msa0168650 | Msa0657970 | 0.820608 | 6.270200e-53 | -8.615850e-47 |
| Msa0168650 | Msa0682330 | 0.806798 | 6.905332e-50 | -8.615850e-47 |
| Msa0168650 | Msa0739730 | 0.801545 | 8.559106e-49 | -8.615850e-47 |
| Msa0168650 | Msa0816150 | 0.815567 | 8.651461e-52 | -8.615850e-47 |
| Msa0168650 | Msa0822870 | 0.816236 | 6.136518e-52 | -8.615850e-47 |
| Msa0168650 | Msa0824660 | 0.801806 | 7.569113e-49 | -8.615850e-47 |
| Msa0168650 | Msa0824840 | 0.819448 | 1.155446e-52 | -8.615850e-47 |
| Msa0168650 | Msa0826130 | 0.814245 | 1.699264e-51 | -8.615850e-47 |
| Msa0168650 | Msa0828560 | 0.815657 | 8.260723e-52 | -8.615850e-47 |
| Msa0168650 | Msa0861870 | 0.806861 | 6.695889e-50 | -8.615850e-47 |
| Msa0168650 | Msa0880140 | 0.820325 | 7.280740e-53 | -8.615850e-47 |
| Msa0168650 | Msa0896540 | 0.821165 | 4.667996e-53 | -8.615850e-47 |
| Msa0168650 | Msa0909140 | 0.811848 | 5.702392e-51 | -8.615850e-47 |
| Msa0168650 | Msa0936410 | 0.810269 | 1.253892e-50 | -8.615850e-47 |
| Msa0168650 | Msa0961690 | 0.801574 | 8.444326e-49 | -8.615850e-47 |
| Msa0168650 | Msa0967380 | 0.822074 | 2.876726e-53 | -8.615850e-47 |
| Msa0168650 | Msa0973250 | 0.810645 | 1.039723e-50 | -8.615850e-47 |
| Msa0168650 | Msa1019430 | 0.805937 | 1.048670e-49 | -8.615850e-47 |
| Msa0168650 | Msa1019470 | 0.807611 | 4.645262e-50 | -8.615850e-47 |
| Msa0168650 | Msa1047980 | 0.808294 | 3.323815e-50 | -8.615850e-47 |
| Msa0168650 | Msa1078170 | 0.806596 | 7.619189e-50 | -8.615850e-47 |
| Msa0168650 | Msa1092010 | 0.804563 | 2.034419e-49 | -8.615850e-47 |
| Msa0168650 | Msa1103500 | 0.811990 | 5.308421e-51 | -8.615850e-47 |
| Msa0168650 | Msa1151910 | 0.805666 | 1.195423e-49 | -8.615850e-47 |
| Msa0168650 | Msa1208160 | 0.806376 | 8.476550e-50 | -8.615850e-47 |
| Msa0168650 | Msa1209460 | 0.804699 | 1.905342e-49 | -8.615850e-47 |
| Msa0168650 | Msa1239920 | 0.818185 | 2.236952e-52 | -8.615850e-47 |
| Msa0168650 | Msa1303250 | 0.803912 | 2.778995e-49 | -8.615850e-47 |
| Msa0168650 | Msa1374550 | 0.856321 | 3.482401e-62 | -8.615850e-47 |
| Msa0168650 | Msa1451160 | 0.800757 | 1.240745e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168650 | MtrunA17_Chr1g0185201 | 93.252 | 489 | 24 | 3 | 1 | 484 | 1 | 485 | 0.0 | 756 |
| Msa0168650 | MtrunA17_Chr7g0260211 | 72.245 | 490 | 109 | 12 | 1 | 481 | 1 | 472 | 0.0 | 620 |
| Msa0168650 | MtrunA17_Chr1g0166381 | 61.538 | 468 | 156 | 8 | 26 | 482 | 13 | 467 | 4.23e-151 | 439 |
| Msa0168650 | MtrunA17_Chr1g0204831 | 59.570 | 465 | 152 | 10 | 24 | 482 | 20 | 454 | 5.73e-131 | 387 |
| Msa0168650 | MtrunA17_Chr3g0140081 | 36.161 | 448 | 198 | 13 | 33 | 473 | 1 | 367 | 7.27e-55 | 187 |
| Msa0168650 | MtrunA17_Chr4g0019631 | 43.846 | 260 | 106 | 7 | 188 | 433 | 64 | 297 | 1.59e-41 | 150 |
| Msa0168650 | MtrunA17_Chr5g0399391 | 34.884 | 301 | 150 | 8 | 189 | 475 | 113 | 381 | 9.62e-40 | 147 |
| Msa0168650 | MtrunA17_Chr7g0260231 | 65.854 | 41 | 12 | 1 | 443 | 481 | 7 | 47 | 8.45e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168650 | AT3G22810.1 | 60.125 | 479 | 165 | 11 | 14 | 481 | 6 | 469 | 9.63e-167 | 479 |
| Msa0168650 | AT4G14740.1 | 60.297 | 471 | 162 | 11 | 24 | 481 | 16 | 474 | 4.99e-160 | 462 |
| Msa0168650 | AT4G14740.2 | 60.297 | 471 | 162 | 11 | 24 | 481 | 16 | 474 | 4.99e-160 | 462 |
| Msa0168650 | AT3G63300.1 | 60.243 | 493 | 170 | 12 | 7 | 484 | 11 | 492 | 5.88e-157 | 455 |
| Msa0168650 | AT5G43870.1 | 56.329 | 474 | 160 | 12 | 19 | 481 | 15 | 452 | 3.79e-142 | 416 |
| Msa0168650 | AT3G22810.2 | 59.367 | 411 | 141 | 11 | 14 | 413 | 6 | 401 | 3.27e-126 | 374 |
| Msa0168650 | AT3G22810.3 | 62.651 | 332 | 115 | 4 | 156 | 481 | 3 | 331 | 4.27e-123 | 363 |
| Msa0168650 | AT4G14740.4 | 58.663 | 404 | 142 | 11 | 24 | 414 | 16 | 407 | 1.46e-120 | 359 |
| Msa0168650 | AT4G14740.3 | 63.393 | 336 | 110 | 5 | 156 | 481 | 3 | 335 | 7.46e-120 | 355 |
| Msa0168650 | AT5G43870.2 | 55.528 | 407 | 134 | 12 | 19 | 414 | 15 | 385 | 4.19e-106 | 321 |
| Msa0168650 | AT3G63300.2 | 60.000 | 340 | 120 | 8 | 155 | 484 | 1 | 334 | 1.18e-99 | 303 |
| Msa0168650 | AT4G17350.1 | 33.994 | 353 | 170 | 12 | 138 | 475 | 82 | 386 | 2.41e-38 | 144 |
| Msa0168650 | AT4G32780.1 | 33.480 | 454 | 203 | 12 | 26 | 473 | 35 | 395 | 1.25e-36 | 140 |
| Msa0168650 | AT4G32780.2 | 33.480 | 454 | 203 | 12 | 26 | 473 | 54 | 414 | 1.96e-36 | 139 |
| Msa0168650 | AT4G16670.1 | 32.673 | 303 | 167 | 9 | 189 | 476 | 132 | 412 | 1.42e-34 | 134 |
| Msa0168650 | AT5G47440.1 | 34.397 | 282 | 152 | 7 | 200 | 476 | 134 | 387 | 5.95e-34 | 132 |
| Msa0168650 | AT4G16670.2 | 33.333 | 240 | 124 | 8 | 189 | 413 | 132 | 350 | 1.16e-22 | 99.4 |
| Msa0168650 | AT4G16670.3 | 29.740 | 269 | 124 | 9 | 189 | 413 | 132 | 379 | 3.64e-17 | 83.6 |
| Msa0168650 | AT5G57770.1 | 32.414 | 290 | 156 | 7 | 141 | 423 | 82 | 338 | 6.96e-16 | 80.1 |
| Msa0168650 | AT5G57770.2 | 32.117 | 274 | 149 | 6 | 141 | 407 | 82 | 325 | 3.14e-15 | 77.4 |
Find 86 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTATTAATTTCCCTTAT+AGG | 0.131479 | 1_4:+51486271 | None:intergenic |
| GTTAAAGAACCACCATTTAA+TGG | 0.205078 | 1_4:+51489500 | None:intergenic |
| ACCAAATAAGGATGAGAAAA+TGG | 0.261318 | 1_4:-51487944 | Msa0168650:CDS |
| CAGCATGAAGTTGAGCATTA+TGG | 0.291068 | 1_4:+51488034 | None:intergenic |
| TTAAATGGTGGTTCTTTAAC+AGG | 0.293923 | 1_4:-51489497 | Msa0168650:CDS |
| GCTCTTGTACCATTGAATAA+AGG | 0.299178 | 1_4:+51488159 | None:intergenic |
| TTCCTCTAGCAAGAAGTTCT+TGG | 0.299562 | 1_4:+51486999 | None:intergenic |
| GACAATCTACCTGATGTTAA+TGG | 0.299992 | 1_4:+51489536 | None:intergenic |
| TCCTCTAAAAGATGCCTTCC+TGG | 0.305425 | 1_4:+51486540 | None:intergenic |
| AGCATCAACTACACCAAATA+AGG | 0.313923 | 1_4:-51487956 | Msa0168650:CDS |
| AGAAACTCCATTGGTATTCT+AGG | 0.315941 | 1_4:+51490002 | None:intergenic |
| CCTTGATATATGCAGCTCTA+AGG | 0.317117 | 1_4:-51487207 | Msa0168650:intron |
| TTATTTGTAGAAGGCTTAGA+AGG | 0.318646 | 1_4:+51489897 | None:intergenic |
| AACTCATCAGAAGGAGAAAT+TGG | 0.321795 | 1_4:+51489461 | None:intergenic |
| TATTATATGTATGTTAGTTT+AGG | 0.323108 | 1_4:-51486308 | Msa0168650:three_prime_UTR |
| TGACTTGAATATTGTTGTTA+TGG | 0.332773 | 1_4:+51490114 | None:intergenic |
| GGAATAGAGTTATTTGTAGA+AGG | 0.336321 | 1_4:+51489888 | None:intergenic |
| GAAGGAGGAGGTGGTGGTTG+AGG | 0.346886 | 1_4:+51489930 | None:intergenic |
| CTGTAAAGAATCAACTAATA+AGG | 0.348464 | 1_4:-51487328 | Msa0168650:intron |
| CATAGCAGTGAACCATTAAA+TGG | 0.367882 | 1_4:-51489512 | Msa0168650:CDS |
| GGCAATGCAACTCCTTGTTC+AGG | 0.369214 | 1_4:-51488120 | Msa0168650:CDS |
| AGATTATTAATACTTTCTTC+AGG | 0.382504 | 1_4:+51489867 | None:intergenic |
| CTTGAGAAAAGCATAGGAAT+TGG | 0.387663 | 1_4:-51487118 | Msa0168650:CDS |
| CTCTTGTACCATTGAATAAA+GGG | 0.392154 | 1_4:+51488160 | None:intergenic |
| AAAATAATTGAAAAGATAGA+TGG | 0.394296 | 1_4:+51486200 | None:intergenic |
| TCAATACACCCTTTATTCAA+TGG | 0.395801 | 1_4:-51488168 | Msa0168650:CDS |
| CAAGAAGAAGGAGGAGGTGG+TGG | 0.403057 | 1_4:+51489924 | None:intergenic |
| GAAAATGGCTAAGACTGATA+TGG | 0.426643 | 1_4:-51487929 | Msa0168650:CDS |
| TCCTCCACTTTCACTAGTGC+TGG | 0.429703 | 1_4:+51487060 | None:intergenic |
| AGAGCTATGAGAAGTGGAAT+TGG | 0.431112 | 1_4:-51488141 | Msa0168650:CDS |
| TGGAATGTAATATTTGTTGC+CGG | 0.440292 | 1_4:-51486373 | Msa0168650:exon |
| TATCTGTAGGTGATCTTCAC+TGG | 0.451022 | 1_4:-51486863 | Msa0168650:intron |
| TCTGTTTATATACATCGAAC+CGG | 0.472832 | 1_4:-51486831 | Msa0168650:CDS |
| AAGCAAGAAGAAGGAGGAGG+TGG | 0.473902 | 1_4:+51489921 | None:intergenic |
| GTGTTGCCATTGTTATTTGT+TGG | 0.477598 | 1_4:+51490041 | None:intergenic |
| ATTGGTATTCTAGGACTCTC+TGG | 0.477798 | 1_4:+51490011 | None:intergenic |
| TGACAATGGATAGTTAACTT+TGG | 0.480512 | 1_4:+51490080 | None:intergenic |
| CTTGATATATGCAGCTCTAA+GGG | 0.484756 | 1_4:-51487206 | Msa0168650:intron |
| TGGAGTTTCTATCAAGATCA+TGG | 0.486579 | 1_4:-51489989 | Msa0168650:CDS |
| ATTGGAATATGTGGTGGTAA+AGG | 0.500015 | 1_4:-51487100 | Msa0168650:CDS |
| AGTTCCAGCACTAGTGAAAG+TGG | 0.506365 | 1_4:-51487064 | Msa0168650:CDS |
| TGCCATTGTTATTTGTTGGA+AGG | 0.506542 | 1_4:+51490045 | None:intergenic |
| AGCATAGGAATTGGAATATG+TGG | 0.506802 | 1_4:-51487109 | Msa0168650:CDS |
| GGTACTCATTTCTATGACAA+TGG | 0.513249 | 1_4:+51490066 | None:intergenic |
| AGATGCCTTCCTGGCCAAGC+TGG | 0.516445 | 1_4:+51486549 | None:intergenic |
| TGTGCACAAATTTACCAGCT+TGG | 0.518454 | 1_4:-51486563 | Msa0168650:CDS |
| ACAAATTTACCAGCTTGGCC+AGG | 0.521574 | 1_4:-51486558 | Msa0168650:CDS |
| TGAGTTTGACGATGTTGTTA+AGG | 0.540707 | 1_4:-51489444 | Msa0168650:intron |
| TAGTTTAGTTACCTCTCTTG+CGG | 0.541433 | 1_4:+51489752 | None:intergenic |
| TTATATACATCGAACCGGCC+AGG | 0.552074 | 1_4:-51486826 | Msa0168650:intron |
| GAAGTGTCTCCATTAACATC+AGG | 0.553106 | 1_4:-51489545 | Msa0168650:CDS |
| GACCTAAAACAGTAGGAAGA+TGG | 0.556861 | 1_4:-51488098 | Msa0168650:CDS |
| ATGAAAAGCAGACATGTAGC+AGG | 0.561812 | 1_4:-51486709 | Msa0168650:CDS |
| GGTAAGCAAGAAGAAGGAGG+AGG | 0.564082 | 1_4:+51489918 | None:intergenic |
| TGTTGAAGCTGCTGAAGCAA+TGG | 0.569846 | 1_4:-51487869 | Msa0168650:CDS |
| TCATCAGAAGGAGAAATTGG+TGG | 0.570671 | 1_4:+51489464 | None:intergenic |
| CAAGAATTCTCAAACATGCG+TGG | 0.574129 | 1_4:-51489840 | Msa0168650:CDS |
| TTAGAAGGTAAGCAAGAAGA+AGG | 0.574163 | 1_4:+51489912 | None:intergenic |
| TTACTCAAACGCACTCGCAA+AGG | 0.576539 | 1_4:-51486971 | Msa0168650:intron |
| CACTAGTGAAAGTGGAGGAG+AGG | 0.576683 | 1_4:-51487056 | Msa0168650:CDS |
| GGTACAAGAGCTATGAGAAG+TGG | 0.579414 | 1_4:-51488147 | Msa0168650:CDS |
| ATTTACCAGCTTGGCCAGGA+AGG | 0.579688 | 1_4:-51486554 | Msa0168650:CDS |
| GATCTTGATAGAAACTCCAT+TGG | 0.580591 | 1_4:+51489993 | None:intergenic |
| GCAGTCAGCAGTGACTAGAC+CGG | 0.580943 | 1_4:+51486354 | None:intergenic |
| TTCTTTCCATTGTTTCACAC+AGG | 0.583564 | 1_4:-51486407 | Msa0168650:CDS |
| GGCTAAGACTGATATGGCTG+TGG | 0.584637 | 1_4:-51487923 | Msa0168650:CDS |
| GTTGAAGCTGCTGAAGCAAT+GGG | 0.585546 | 1_4:-51487868 | Msa0168650:CDS |
| ACATCGTCAAACTCATCAGA+AGG | 0.588966 | 1_4:+51489452 | None:intergenic |
| CAAGAGCATTGAAAGAGATG+TGG | 0.593373 | 1_4:-51487165 | Msa0168650:CDS |
| TGATATATGCAGCTCTAAGG+GGG | 0.594778 | 1_4:-51487204 | Msa0168650:intron |
| AGAGAGTCCTAGAATACCAA+TGG | 0.596028 | 1_4:-51490009 | Msa0168650:CDS |
| TGTTCAGGACCTAAAACAGT+AGG | 0.601269 | 1_4:-51488105 | Msa0168650:CDS |
| AGCCAAGAACTTCTTGCTAG+AGG | 0.604636 | 1_4:-51487001 | Msa0168650:CDS |
| TTGATATATGCAGCTCTAAG+GGG | 0.610071 | 1_4:-51487205 | Msa0168650:intron |
| ACACCACTTGAGAAAAGCAT+AGG | 0.613376 | 1_4:-51487124 | Msa0168650:CDS |
| AGGAATGTTCATGTTACACA+TGG | 0.614911 | 1_4:-51487308 | Msa0168650:intron |
| CATGTCACAATCCGCAAGAG+AGG | 0.623909 | 1_4:-51489763 | Msa0168650:intron |
| TACCTTCCAACAAATAACAA+TGG | 0.629115 | 1_4:-51490047 | Msa0168650:CDS |
| GAAGGTAAGCAAGAAGAAGG+AGG | 0.632750 | 1_4:+51489915 | None:intergenic |
| GAATATGAATTGTGGACACA+AGG | 0.633773 | 1_4:-51486441 | Msa0168650:CDS |
| ATAGGAATTGGAATATGTGG+TGG | 0.638819 | 1_4:-51487106 | Msa0168650:CDS |
| TCCAGCACTAGTGAAAGTGG+AGG | 0.639385 | 1_4:-51487061 | Msa0168650:CDS |
| CAGAACTAACAACAGAAGCA+AGG | 0.657396 | 1_4:+51487830 | None:intergenic |
| AGCAGTGAACCATTAAATGG+TGG | 0.669009 | 1_4:-51489509 | Msa0168650:CDS |
| GATATATGCAGCTCTAAGGG+GGG | 0.694136 | 1_4:-51487203 | Msa0168650:intron |
| GGATTGAAGACAGAATCAAG+AGG | 0.704203 | 1_4:-51486495 | Msa0168650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAAAAAAAATAAAGGT+TGG | + | chr1_4:51488636-51488655 | None:intergenic | 10.0% |
| !! | ATCATTCATATTATTTATTT+AGG | - | chr1_4:51488780-51488799 | Msa0168650:intron | 10.0% |
| !! | TCATTCATATTATTTATTTA+GGG | - | chr1_4:51488781-51488800 | Msa0168650:intron | 10.0% |
| !!! | GTTTTTTGTTTATAGTAATT+TGG | - | chr1_4:51486723-51486742 | Msa0168650:CDS | 15.0% |
| !! | ATATTACTAGTAGAAAAATA+TGG | + | chr1_4:51487282-51487301 | None:intergenic | 15.0% |
| !! | AAGCATATCATTAAAAATAT+TGG | + | chr1_4:51488094-51488113 | None:intergenic | 15.0% |
| !! | CAAAATGATTAAACTATATT+TGG | - | chr1_4:51489423-51489442 | Msa0168650:intron | 15.0% |
| !!! | TATTATATGTATGTTAGTTT+AGG | - | chr1_4:51490008-51490027 | Msa0168650:CDS | 15.0% |
| !!! | ATTAATAGATTTTGTAACAT+TGG | - | chr1_4:51490057-51490076 | Msa0168650:CDS | 15.0% |
| !! | AGATTATTAATACTTTCTTC+AGG | + | chr1_4:51486452-51486471 | None:intergenic | 20.0% |
| !!! | TAAAGTTTGTTTTATGTAAC+AGG | - | chr1_4:51486749-51486768 | Msa0168650:intron | 20.0% |
| !! | ATATGAACAAAATGTGTAAT+TGG | + | chr1_4:51487646-51487665 | None:intergenic | 20.0% |
| !!! | TCAGAATTTTTTTATTCAGA+TGG | - | chr1_4:51488067-51488086 | Msa0168650:CDS | 20.0% |
| !! | TAAAAAAAATGTCACAATGT+TGG | - | chr1_4:51488609-51488628 | Msa0168650:intron | 20.0% |
| !!! | ATATTATTTATTTAGGGTAG+TGG | - | chr1_4:51488787-51488806 | Msa0168650:intron | 20.0% |
| !! | AATCTTGATTAGAAAATGTA+TGG | + | chr1_4:51488824-51488843 | None:intergenic | 20.0% |
| !! | AAAAAATCATACTACAAAAC+AGG | + | chr1_4:51489055-51489074 | None:intergenic | 20.0% |
| !! | TTAAAGAACAAAAAATTACC+TGG | + | chr1_4:51489511-51489530 | None:intergenic | 20.0% |
| !!! | ACTCTTTTTCTTTTTTGTAA+TGG | + | chr1_4:51489635-51489654 | None:intergenic | 20.0% |
| !!! | ATTATTTCTATGATATTGCA+AGG | + | chr1_4:51489686-51489705 | None:intergenic | 20.0% |
| !! | TCATAGAAATAATAACTCAT+TGG | - | chr1_4:51489693-51489712 | Msa0168650:intron | 20.0% |
| !! | CATAGAAATAATAACTCATT+GGG | - | chr1_4:51489694-51489713 | Msa0168650:intron | 20.0% |
| !! | AATCTATTAATTTCCCTTAT+AGG | + | chr1_4:51490048-51490067 | None:intergenic | 20.0% |
| ! | CAATATTCAAGTCACAAAAA+TGG | - | chr1_4:51486211-51486230 | Msa0168650:three_prime_UTR | 25.0% |
| ! | TTCCTACATATACTTCAAAA+GGG | + | chr1_4:51486610-51486629 | None:intergenic | 25.0% |
| ! | TTTCCTACATATACTTCAAA+AGG | + | chr1_4:51486611-51486630 | None:intergenic | 25.0% |
| ! | TATATGTAGGAAAAGACTTA+AGG | - | chr1_4:51486618-51486637 | Msa0168650:intron | 25.0% |
| ! | ATATGTAGGAAAAGACTTAA+GGG | - | chr1_4:51486619-51486638 | Msa0168650:intron | 25.0% |
| !!! | AGACATTGTTATTCTTTTCA+AGG | - | chr1_4:51486695-51486714 | Msa0168650:CDS | 25.0% |
| !!! | TGTTATTCTTTTCAAGGTTT+TGG | - | chr1_4:51486701-51486720 | Msa0168650:CDS | 25.0% |
| ! | AAATATGGTCAAAGTAAGTT+AGG | + | chr1_4:51487267-51487286 | None:intergenic | 25.0% |
| ! | ACTACTTTCTTGGTTTAATA+TGG | - | chr1_4:51487473-51487492 | Msa0168650:intron | 25.0% |
| ! | AAAATGTGTAATTGGATTCA+TGG | + | chr1_4:51487638-51487657 | None:intergenic | 25.0% |
| !! | TGAACTTTGAACATAACTTT+TGG | - | chr1_4:51487816-51487835 | Msa0168650:intron | 25.0% |
| !! | TTTGAACATAACTTTTGGAT+GGG | - | chr1_4:51487821-51487840 | Msa0168650:intron | 25.0% |
| ! | CTGTAAAGAATCAACTAATA+AGG | - | chr1_4:51488988-51489007 | Msa0168650:intron | 25.0% |
| !! | ATTTTTACCAGATATTGTGT+TGG | - | chr1_4:51489727-51489746 | Msa0168650:intron | 25.0% |
| ! | ACCAAAAAGAATATGAATTG+TGG | - | chr1_4:51489867-51489886 | Msa0168650:CDS | 25.0% |
| !! | TCCACAATTCATATTCTTTT+TGG | + | chr1_4:51489871-51489890 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGCAAATCCTATA+AGG | - | chr1_4:51490031-51490050 | Msa0168650:CDS | 25.0% |
| !!! | TTGTTTTGCAAATCCTATAA+GGG | - | chr1_4:51490032-51490051 | Msa0168650:CDS | 25.0% |
| !! | TAGATTTTGTAACATTGGAA+TGG | - | chr1_4:51490062-51490081 | Msa0168650:CDS | 25.0% |
| !! | AGATTTTGTAACATTGGAAT+GGG | - | chr1_4:51490063-51490082 | Msa0168650:CDS | 25.0% |
| TGACAATGGATAGTTAACTT+TGG | + | chr1_4:51486239-51486258 | None:intergenic | 30.0% | |
| TACCTTCCAACAAATAACAA+TGG | - | chr1_4:51486269-51486288 | Msa0168650:three_prime_UTR | 30.0% | |
| TTATTTGTAGAAGGCTTAGA+AGG | + | chr1_4:51486422-51486441 | None:intergenic | 30.0% | |
| GGAATAGAGTTATTTGTAGA+AGG | + | chr1_4:51486431-51486450 | None:intergenic | 30.0% | |
| TCCTACATATACTTCAAAAG+GGG | + | chr1_4:51486609-51486628 | None:intergenic | 30.0% | |
| GTTAAAGAACCACCATTTAA+TGG | + | chr1_4:51486819-51486838 | None:intergenic | 30.0% | |
| TTAAATGGTGGTTCTTTAAC+AGG | - | chr1_4:51486819-51486838 | Msa0168650:intron | 30.0% | |
| !! | ACTGCAACAATTGTTTCTAA+GGG | + | chr1_4:51486941-51486960 | None:intergenic | 30.0% |
| AAAACTAAATCTAGCAGCAA+GGG | - | chr1_4:51487077-51487096 | Msa0168650:CDS | 30.0% | |
| !!! | GAGGGAGTACTATTTTATTA+TGG | + | chr1_4:51487202-51487221 | None:intergenic | 30.0% |
| TTCAAATGAGTCATCTATTG+CGG | + | chr1_4:51487229-51487248 | None:intergenic | 30.0% | |
| TTGCAACAGTAACAATACTT+TGG | - | chr1_4:51487522-51487541 | Msa0168650:intron | 30.0% | |
| GTAACAATACTTTGGTATAG+AGG | - | chr1_4:51487530-51487549 | Msa0168650:intron | 30.0% | |
| ! | TACTTTGGTATAGAGGTTTT+TGG | - | chr1_4:51487537-51487556 | Msa0168650:intron | 30.0% |
| AGTAAATTGTACACCACTAA+TGG | - | chr1_4:51487678-51487697 | Msa0168650:intron | 30.0% | |
| !!! | TCTTTTTTTTTGTCAGGTAG+TGG | + | chr1_4:51487717-51487736 | None:intergenic | 30.0% |
| !!! | GTTAGCTCTTTTTTTTTGTC+AGG | + | chr1_4:51487723-51487742 | None:intergenic | 30.0% |
| AAGTCATAAGCTATAACACT+AGG | + | chr1_4:51487751-51487770 | None:intergenic | 30.0% | |
| ! | CTTTGAACATAACTTTTGGA+TGG | - | chr1_4:51487820-51487839 | Msa0168650:intron | 30.0% |
| AATCAGAAGATAAGGTACAT+TGG | + | chr1_4:51487952-51487971 | None:intergenic | 30.0% | |
| GAAAATATGCCAAAATGAGA+AGG | + | chr1_4:51487986-51488005 | None:intergenic | 30.0% | |
| TTTCCTAGTTAAATGCTGAA+GGG | + | chr1_4:51488029-51488048 | None:intergenic | 30.0% | |
| ! | TTTTCCTAGTTAAATGCTGA+AGG | + | chr1_4:51488030-51488049 | None:intergenic | 30.0% |
| TCAATACACCCTTTATTCAA+TGG | - | chr1_4:51488148-51488167 | Msa0168650:CDS | 30.0% | |
| CTCTTGTACCATTGAATAAA+GGG | + | chr1_4:51488159-51488178 | None:intergenic | 30.0% | |
| ACCAAATAAGGATGAGAAAA+TGG | - | chr1_4:51488372-51488391 | Msa0168650:intron | 30.0% | |
| AATGAAGAAAATTCTACCTG+TGG | + | chr1_4:51488563-51488582 | None:intergenic | 30.0% | |
| AGTCTAGTTATGAAATTGAG+TGG | - | chr1_4:51488735-51488754 | Msa0168650:intron | 30.0% | |
| GTCTAGTTATGAAATTGAGT+GGG | - | chr1_4:51488736-51488755 | Msa0168650:intron | 30.0% | |
| TCTAGTTATGAAATTGAGTG+GGG | - | chr1_4:51488737-51488756 | Msa0168650:intron | 30.0% | |
| !! | TATTTATTTAGGGTAGTGGA+AGG | - | chr1_4:51488791-51488810 | Msa0168650:intron | 30.0% |
| !! | ATTTATTTAGGGTAGTGGAA+GGG | - | chr1_4:51488792-51488811 | Msa0168650:intron | 30.0% |
| TTCTAATCAAGATTCGAACT+CGG | - | chr1_4:51488830-51488849 | Msa0168650:intron | 30.0% | |
| ! | ATTTGGTGATTGATATCTGT+AGG | - | chr1_4:51489440-51489459 | Msa0168650:intron | 30.0% |
| TCTGTTTATATACATCGAAC+CGG | - | chr1_4:51489485-51489504 | Msa0168650:CDS | 30.0% | |
| AGTAGAAATTGACACATAGT+TGG | - | chr1_4:51489537-51489556 | Msa0168650:CDS | 30.0% | |
| !!! | GGTGAAAAAAGAAGGTATTT+TGG | - | chr1_4:51489800-51489819 | Msa0168650:CDS | 30.0% |
| ! | TGGAATGTAATATTTGTTGC+CGG | - | chr1_4:51489943-51489962 | Msa0168650:CDS | 30.0% |
| GGTACTCATTTCTATGACAA+TGG | + | chr1_4:51486253-51486272 | None:intergenic | 35.0% | |
| !! | TGCCATTGTTATTTGTTGGA+AGG | + | chr1_4:51486274-51486293 | None:intergenic | 35.0% |
| !! | GTGTTGCCATTGTTATTTGT+TGG | + | chr1_4:51486278-51486297 | None:intergenic | 35.0% |
| AGAAACTCCATTGGTATTCT+AGG | + | chr1_4:51486317-51486336 | None:intergenic | 35.0% | |
| GATCTTGATAGAAACTCCAT+TGG | + | chr1_4:51486326-51486345 | None:intergenic | 35.0% | |
| TGGAGTTTCTATCAAGATCA+TGG | - | chr1_4:51486327-51486346 | Msa0168650:three_prime_UTR | 35.0% | |
| TTAGAAGGTAAGCAAGAAGA+AGG | + | chr1_4:51486407-51486426 | None:intergenic | 35.0% | |
| TAGTTTAGTTACCTCTCTTG+CGG | + | chr1_4:51486567-51486586 | None:intergenic | 35.0% | |
| !!! | ACCCCTTTTGAAGTATATGT+AGG | - | chr1_4:51486605-51486624 | Msa0168650:intron | 35.0% |
| GACAATCTACCTGATGTTAA+TGG | + | chr1_4:51486783-51486802 | None:intergenic | 35.0% | |
| CATAGCAGTGAACCATTAAA+TGG | - | chr1_4:51486804-51486823 | Msa0168650:intron | 35.0% | |
| AACTCATCAGAAGGAGAAAT+TGG | + | chr1_4:51486858-51486877 | None:intergenic | 35.0% | |
| TGAGTTTGACGATGTTGTTA+AGG | - | chr1_4:51486872-51486891 | Msa0168650:intron | 35.0% | |
| !! | TGTTCCCTTACCTTTTGTTT+TGG | - | chr1_4:51486903-51486922 | Msa0168650:intron | 35.0% |
| !!! | GTTCCCTTACCTTTTGTTTT+GGG | - | chr1_4:51486904-51486923 | Msa0168650:intron | 35.0% |
| CAACCCAAAACAAAAGGTAA+GGG | + | chr1_4:51486910-51486929 | None:intergenic | 35.0% | |
| !! | GACTGCAACAATTGTTTCTA+AGG | + | chr1_4:51486942-51486961 | None:intergenic | 35.0% |
| CAAAACTAAATCTAGCAGCA+AGG | - | chr1_4:51487076-51487095 | Msa0168650:CDS | 35.0% | |
| AAACATGTGATCCAAAAGTG+AGG | + | chr1_4:51487174-51487193 | None:intergenic | 35.0% | |
| TCAAATGAGTCATCTATTGC+GGG | + | chr1_4:51487228-51487247 | None:intergenic | 35.0% | |
| ! | TATGCATTGATATGCGTAAC+AGG | - | chr1_4:51487415-51487434 | Msa0168650:intron | 35.0% |
| ! | ATGCATTGATATGCGTAACA+GGG | - | chr1_4:51487416-51487435 | Msa0168650:intron | 35.0% |
| TCAACTGTGTCATGCATTAT+GGG | - | chr1_4:51487439-51487458 | Msa0168650:intron | 35.0% | |
| !! | GGTGTACAATTTACTTTTGC+AGG | + | chr1_4:51487673-51487692 | None:intergenic | 35.0% |
| ! | AAAGCATTAGAGACCATTAG+TGG | + | chr1_4:51487694-51487713 | None:intergenic | 35.0% |
| ATATGCCAAAATGAGAAGGT+TGG | + | chr1_4:51487982-51488001 | None:intergenic | 35.0% | |
| GCTCTTGTACCATTGAATAA+AGG | + | chr1_4:51488160-51488179 | None:intergenic | 35.0% | |
| ! | AACCATCTTCCTACTGTTTT+AGG | + | chr1_4:51488223-51488242 | None:intergenic | 35.0% |
| AGCATCAACTACACCAAATA+AGG | - | chr1_4:51488360-51488379 | Msa0168650:intron | 35.0% | |
| !! | GCCATTTTCTCATCCTTATT+TGG | + | chr1_4:51488376-51488395 | None:intergenic | 35.0% |
| GAAAATGGCTAAGACTGATA+TGG | - | chr1_4:51488387-51488406 | Msa0168650:intron | 35.0% | |
| AGGAATGTTCATGTTACACA+TGG | - | chr1_4:51489008-51489027 | Msa0168650:intron | 35.0% | |
| ! | ATGTTACACATGGTTTGTCA+GGG | - | chr1_4:51489018-51489037 | Msa0168650:intron | 35.0% |
| ! | CTTGATATATGCAGCTCTAA+GGG | - | chr1_4:51489110-51489129 | Msa0168650:intron | 35.0% |
| !! | TTGATATATGCAGCTCTAAG+GGG | - | chr1_4:51489111-51489130 | Msa0168650:intron | 35.0% |
| ! | ATTCCTATGCTTTTCTCAAG+TGG | + | chr1_4:51489198-51489217 | None:intergenic | 35.0% |
| ! | CTTGAGAAAAGCATAGGAAT+TGG | - | chr1_4:51489198-51489217 | Msa0168650:intron | 35.0% |
| AGCATAGGAATTGGAATATG+TGG | - | chr1_4:51489207-51489226 | Msa0168650:intron | 35.0% | |
| ATAGGAATTGGAATATGTGG+TGG | - | chr1_4:51489210-51489229 | Msa0168650:intron | 35.0% | |
| ATTGGAATATGTGGTGGTAA+AGG | - | chr1_4:51489216-51489235 | Msa0168650:intron | 35.0% | |
| AGAACAAAAAATTACCTGGC+CGG | + | chr1_4:51489507-51489526 | None:intergenic | 35.0% | |
| GAATGCAAGCATTTGATGAA+TGG | + | chr1_4:51489568-51489587 | None:intergenic | 35.0% | |
| CAAATGCTTGCATTCATTTC+AGG | - | chr1_4:51489573-51489592 | Msa0168650:intron | 35.0% | |
| TAGAGGATGGTGAAAAAAGA+AGG | - | chr1_4:51489792-51489811 | Msa0168650:CDS | 35.0% | |
| GAATATGAATTGTGGACACA+AGG | - | chr1_4:51489875-51489894 | Msa0168650:CDS | 35.0% | |
| TTCTTTCCATTGTTTCACAC+AGG | - | chr1_4:51489909-51489928 | Msa0168650:CDS | 35.0% | |
| ! | GTTTTTCCTGTGTGAAACAA+TGG | + | chr1_4:51489918-51489937 | None:intergenic | 35.0% |
| TCACACAGGAAAAACAGAAA+TGG | - | chr1_4:51489923-51489942 | Msa0168650:CDS | 35.0% | |
| !! | ATTGGTATTCTAGGACTCTC+TGG | + | chr1_4:51486308-51486327 | None:intergenic | 40.0% |
| AGAGAGTCCTAGAATACCAA+TGG | - | chr1_4:51486307-51486326 | Msa0168650:three_prime_UTR | 40.0% | |
| CAAGAATTCTCAAACATGCG+TGG | - | chr1_4:51486476-51486495 | Msa0168650:CDS | 40.0% | |
| ! | GAAGTGTCTCCATTAACATC+AGG | - | chr1_4:51486771-51486790 | Msa0168650:intron | 40.0% |
| AGCAGTGAACCATTAAATGG+TGG | - | chr1_4:51486807-51486826 | Msa0168650:intron | 40.0% | |
| TCATCAGAAGGAGAAATTGG+TGG | + | chr1_4:51486855-51486874 | None:intergenic | 40.0% | |
| ACATCGTCAAACTCATCAGA+AGG | + | chr1_4:51486867-51486886 | None:intergenic | 40.0% | |
| CCAACCCAAAACAAAAGGTA+AGG | + | chr1_4:51486911-51486930 | None:intergenic | 40.0% | |
| !!! | CCTTACCTTTTGTTTTGGGT+TGG | - | chr1_4:51486908-51486927 | Msa0168650:intron | 40.0% |
| !!! | CTTTTGTTTTGGGTTGGAGT+GGG | - | chr1_4:51486914-51486933 | Msa0168650:intron | 40.0% |
| GTCAACTGTGTCATGCATTA+TGG | - | chr1_4:51487438-51487457 | Msa0168650:intron | 40.0% | |
| GTTGCGTGAATCAGAAGATA+AGG | + | chr1_4:51487960-51487979 | None:intergenic | 40.0% | |
| AGAGCTATGAGAAGTGGAAT+TGG | - | chr1_4:51488175-51488194 | Msa0168650:CDS | 40.0% | |
| !! | ACTGTTTTAGGTCCTGAACA+AGG | + | chr1_4:51488211-51488230 | None:intergenic | 40.0% |
| TGTTCAGGACCTAAAACAGT+AGG | - | chr1_4:51488211-51488230 | Msa0168650:intron | 40.0% | |
| GACCTAAAACAGTAGGAAGA+TGG | - | chr1_4:51488218-51488237 | Msa0168650:intron | 40.0% | |
| CAGCATGAAGTTGAGCATTA+TGG | + | chr1_4:51488285-51488304 | None:intergenic | 40.0% | |
| CAGAACTAACAACAGAAGCA+AGG | + | chr1_4:51488489-51488508 | None:intergenic | 40.0% | |
| AACTCGGTCCTTATAAAGCT+AGG | - | chr1_4:51488846-51488865 | Msa0168650:intron | 40.0% | |
| ! | CATGTTACACATGGTTTGTC+AGG | - | chr1_4:51489017-51489036 | Msa0168650:intron | 40.0% |
| ! | TGTTACACATGGTTTGTCAG+GGG | - | chr1_4:51489019-51489038 | Msa0168650:intron | 40.0% |
| ATTGGCAACATAACAAGGAC+AGG | + | chr1_4:51489080-51489099 | None:intergenic | 40.0% | |
| ! | TCCTTGTTATGTTGCCAATG+TGG | - | chr1_4:51489081-51489100 | Msa0168650:intron | 40.0% |
| ACCACATTGGCAACATAACA+AGG | + | chr1_4:51489085-51489104 | None:intergenic | 40.0% | |
| ATATCAAGGAAGGACCACAT+TGG | + | chr1_4:51489098-51489117 | None:intergenic | 40.0% | |
| AGAGCTGCATATATCAAGGA+AGG | + | chr1_4:51489108-51489127 | None:intergenic | 40.0% | |
| CCTTAGAGCTGCATATATCA+AGG | + | chr1_4:51489112-51489131 | None:intergenic | 40.0% | |
| CCTTGATATATGCAGCTCTA+AGG | - | chr1_4:51489109-51489128 | Msa0168650:intron | 40.0% | |
| !! | TGATATATGCAGCTCTAAGG+GGG | - | chr1_4:51489112-51489131 | Msa0168650:intron | 40.0% |
| !! | CAAGAGCATTGAAAGAGATG+TGG | - | chr1_4:51489151-51489170 | Msa0168650:intron | 40.0% |
| ! | ACACCACTTGAGAAAAGCAT+AGG | - | chr1_4:51489192-51489211 | Msa0168650:intron | 40.0% |
| TTCCTCTAGCAAGAAGTTCT+TGG | + | chr1_4:51489320-51489339 | None:intergenic | 40.0% | |
| TATCTGTAGGTGATCTTCAC+TGG | - | chr1_4:51489453-51489472 | Msa0168650:CDS | 40.0% | |
| ATGAAAAGCAGACATGTAGC+AGG | - | chr1_4:51489607-51489626 | Msa0168650:intron | 40.0% | |
| CACACATCCAACACAATATC+TGG | + | chr1_4:51489737-51489756 | None:intergenic | 40.0% | |
| TGTGCACAAATTTACCAGCT+TGG | - | chr1_4:51489753-51489772 | Msa0168650:intron | 40.0% | |
| GGATTGAAGACAGAATCAAG+AGG | - | chr1_4:51489821-51489840 | Msa0168650:CDS | 40.0% | |
| GAAGGTAAGCAAGAAGAAGG+AGG | + | chr1_4:51486404-51486423 | None:intergenic | 45.0% | |
| CCACTCCAACCCAAAACAAA+AGG | + | chr1_4:51486916-51486935 | None:intergenic | 45.0% | |
| !!! | CCTTTTGTTTTGGGTTGGAG+TGG | - | chr1_4:51486913-51486932 | Msa0168650:intron | 45.0% |
| GAAGACACAGACACTAGACA+GGG | + | chr1_4:51487142-51487161 | None:intergenic | 45.0% | |
| ! | TCCTCTTGCAACCTCACTTT+TGG | - | chr1_4:51487160-51487179 | Msa0168650:CDS | 45.0% |
| TCCAAAAGTGAGGTTGCAAG+AGG | + | chr1_4:51487164-51487183 | None:intergenic | 45.0% | |
| ATGAGTCATCTATTGCGGGA+CGG | + | chr1_4:51487224-51487243 | None:intergenic | 45.0% | |
| CTGTGTCATGCATTATGGGT+CGG | - | chr1_4:51487443-51487462 | Msa0168650:intron | 45.0% | |
| CTGTCTAACAATCAGCAAGC+AGG | + | chr1_4:51487908-51487927 | None:intergenic | 45.0% | |
| ! | CTTGCTGATTGTTAGACAGC+AGG | - | chr1_4:51487909-51487928 | Msa0168650:CDS | 45.0% |
| ! | CGCAACCAACCTTCTCATTT+TGG | - | chr1_4:51487974-51487993 | Msa0168650:CDS | 45.0% |
| GCTCCCTTCAGCATTTAACT+AGG | - | chr1_4:51488023-51488042 | Msa0168650:CDS | 45.0% | |
| GGTACAAGAGCTATGAGAAG+TGG | - | chr1_4:51488169-51488188 | Msa0168650:CDS | 45.0% | |
| TGTTGAAGCTGCTGAAGCAA+TGG | - | chr1_4:51488447-51488466 | Msa0168650:intron | 45.0% | |
| GTTGAAGCTGCTGAAGCAAT+GGG | - | chr1_4:51488448-51488467 | Msa0168650:intron | 45.0% | |
| !! | GGTGACTGCCTAGCTTTATA+AGG | + | chr1_4:51488857-51488876 | None:intergenic | 45.0% |
| ! | TTTCGTGTGTGATAGCGTAG+CGG | + | chr1_4:51488878-51488897 | None:intergenic | 45.0% |
| !! | GATATATGCAGCTCTAAGGG+GGG | - | chr1_4:51489113-51489132 | Msa0168650:intron | 45.0% |
| AGTTCCAGCACTAGTGAAAG+TGG | - | chr1_4:51489252-51489271 | Msa0168650:intron | 45.0% | |
| AGCCAAGAACTTCTTGCTAG+AGG | - | chr1_4:51489315-51489334 | Msa0168650:intron | 45.0% | |
| TTACTCAAACGCACTCGCAA+AGG | - | chr1_4:51489345-51489364 | Msa0168650:intron | 45.0% | |
| TTATATACATCGAACCGGCC+AGG | - | chr1_4:51489490-51489509 | Msa0168650:CDS | 45.0% | |
| ACAAATTTACCAGCTTGGCC+AGG | - | chr1_4:51489758-51489777 | Msa0168650:intron | 45.0% | |
| ! | TCCTCTAAAAGATGCCTTCC+TGG | + | chr1_4:51489779-51489798 | None:intergenic | 45.0% |
| !!! | GGAAGGCATCTTTTAGAGGA+TGG | - | chr1_4:51489779-51489798 | Msa0168650:CDS | 45.0% |
| !! | TTCATATATAAAAAAAATAA+AGG | + | chr1_4:51488640-51488659 | None:intergenic | 5.0% |
| AAGCAAGAAGAAGGAGGAGG+TGG | + | chr1_4:51486398-51486417 | None:intergenic | 50.0% | |
| GGTAAGCAAGAAGAAGGAGG+AGG | + | chr1_4:51486401-51486420 | None:intergenic | 50.0% | |
| CATGTCACAATCCGCAAGAG+AGG | - | chr1_4:51486553-51486572 | Msa0168650:CDS | 50.0% | |
| GGAAGACACAGACACTAGAC+AGG | + | chr1_4:51487143-51487162 | None:intergenic | 50.0% | |
| TGTCATGCATTATGGGTCGG+AGG | - | chr1_4:51487446-51487465 | Msa0168650:intron | 50.0% | |
| GTCATGCATTATGGGTCGGA+GGG | - | chr1_4:51487447-51487466 | Msa0168650:intron | 50.0% | |
| !! | CGGAGGGAGTACTACTTTCT+TGG | - | chr1_4:51487463-51487482 | Msa0168650:intron | 50.0% |
| AATCAGCAAGCAGGCAGGTT+TGG | + | chr1_4:51487899-51487918 | None:intergenic | 50.0% | |
| CTAACAATCAGCAAGCAGGC+AGG | + | chr1_4:51487904-51487923 | None:intergenic | 50.0% | |
| GGCAATGCAACTCCTTGTTC+AGG | - | chr1_4:51488196-51488215 | Msa0168650:intron | 50.0% | |
| GGCTAAGACTGATATGGCTG+TGG | - | chr1_4:51488393-51488412 | Msa0168650:intron | 50.0% | |
| TCCAGCACTAGTGAAAGTGG+AGG | - | chr1_4:51489255-51489274 | Msa0168650:intron | 50.0% | |
| TCCTCCACTTTCACTAGTGC+TGG | + | chr1_4:51489259-51489278 | None:intergenic | 50.0% | |
| CACTAGTGAAAGTGGAGGAG+AGG | - | chr1_4:51489260-51489279 | Msa0168650:intron | 50.0% | |
| ATTTACCAGCTTGGCCAGGA+AGG | - | chr1_4:51489762-51489781 | Msa0168650:intron | 50.0% | |
| !!! | GCCAGGAAGGCATCTTTTAG+AGG | - | chr1_4:51489775-51489794 | Msa0168650:CDS | 50.0% |
| CAAGAAGAAGGAGGAGGTGG+TGG | + | chr1_4:51486395-51486414 | None:intergenic | 55.0% | |
| AATCTAGCAGCAAGGGCCCT+AGG | - | chr1_4:51487084-51487103 | Msa0168650:CDS | 55.0% | |
| ACACAGACACTAGACAGGGC+CGG | + | chr1_4:51487138-51487157 | None:intergenic | 55.0% | |
| GTCATCTATTGCGGGACGGA+GGG | + | chr1_4:51487220-51487239 | None:intergenic | 55.0% | |
| AGTCATCTATTGCGGGACGG+AGG | + | chr1_4:51487221-51487240 | None:intergenic | 55.0% | |
| ! | AGCAGGCAGGTTTGGTTGAC+AGG | + | chr1_4:51487891-51487910 | None:intergenic | 55.0% |
| GCAGTCAGCAGTGACTAGAC+CGG | + | chr1_4:51489965-51489984 | None:intergenic | 55.0% | |
| ! | GAAGGAGGAGGTGGTGGTTG+AGG | + | chr1_4:51486389-51486408 | None:intergenic | 60.0% |
| CTAACTGCTGCAGCTGCCAC+AGG | - | chr1_4:51488544-51488563 | Msa0168650:intron | 60.0% | |
| AGATGCCTTCCTGGCCAAGC+TGG | + | chr1_4:51489770-51489789 | None:intergenic | 60.0% | |
| GCACCCCCGGCCTATGCCTA+GGG | - | chr1_4:51487112-51487131 | Msa0168650:CDS | 70.0% | |
| ACAGGGCCGGCCCTAGGCAT+AGG | + | chr1_4:51487125-51487144 | None:intergenic | 70.0% | |
| CACTAGACAGGGCCGGCCCT+AGG | + | chr1_4:51487131-51487150 | None:intergenic | 70.0% | |
| GCCCTAGGTCCTCGCACCCC+CGG | - | chr1_4:51487099-51487118 | Msa0168650:CDS | 75.0% | |
| ! | GCCGGGGGTGCGAGGACCTA+GGG | + | chr1_4:51487103-51487122 | None:intergenic | 75.0% |
| ! | AGGCATAGGCCGGGGGTGCG+AGG | + | chr1_4:51487111-51487130 | None:intergenic | 75.0% |
| CGCACCCCCGGCCTATGCCT+AGG | - | chr1_4:51487111-51487130 | Msa0168650:CDS | 75.0% | |
| CGGCCCTAGGCATAGGCCGG+GGG | + | chr1_4:51487118-51487137 | None:intergenic | 75.0% | |
| CCGGCCCTAGGCATAGGCCG+GGG | + | chr1_4:51487119-51487138 | None:intergenic | 75.0% | |
| CCCCGGCCTATGCCTAGGGC+CGG | - | chr1_4:51487116-51487135 | Msa0168650:CDS | 75.0% | |
| GCCGGCCCTAGGCATAGGCC+GGG | + | chr1_4:51487120-51487139 | None:intergenic | 75.0% | |
| GGCCGGCCCTAGGCATAGGC+CGG | + | chr1_4:51487121-51487140 | None:intergenic | 75.0% | |
| !! | GGCCGGGGGTGCGAGGACCT+AGG | + | chr1_4:51487104-51487123 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 51486204 | 51490134 | 51486204 | ID=Msa0168650;Name=Msa0168650 |
| chr1_4 | mRNA | 51486204 | 51490134 | 51486204 | ID=Msa0168650-mRNA-1;Parent=Msa0168650;Name=Msa0168650-mRNA-1;_AED=0.08;_eAED=0.08;_QI=26|0.71|0.75|0.87|1|1|8|182|484 |
| chr1_4 | exon | 51486204 | 51486600 | 51486204 | ID=Msa0168650-mRNA-1:exon:15189;Parent=Msa0168650-mRNA-1 |
| chr1_4 | exon | 51486686 | 51486743 | 51486686 | ID=Msa0168650-mRNA-1:exon:15188;Parent=Msa0168650-mRNA-1 |
| chr1_4 | exon | 51486827 | 51486876 | 51486827 | ID=Msa0168650-mRNA-1:exon:15187;Parent=Msa0168650-mRNA-1 |
| chr1_4 | exon | 51486972 | 51487214 | 51486972 | ID=Msa0168650-mRNA-1:exon:15186;Parent=Msa0168650-mRNA-1 |
| chr1_4 | exon | 51487309 | 51487342 | 51487309 | ID=Msa0168650-mRNA-1:exon:15185;Parent=Msa0168650-mRNA-1 |
| chr1_4 | exon | 51487822 | 51488208 | 51487822 | ID=Msa0168650-mRNA-1:exon:15184;Parent=Msa0168650-mRNA-1 |
| chr1_4 | exon | 51489445 | 51489567 | 51489445 | ID=Msa0168650-mRNA-1:exon:15183;Parent=Msa0168650-mRNA-1 |
| chr1_4 | exon | 51489764 | 51490134 | 51489764 | ID=Msa0168650-mRNA-1:exon:15182;Parent=Msa0168650-mRNA-1 |
| chr1_4 | five_prime_UTR | 51490109 | 51490134 | 51490109 | ID=Msa0168650-mRNA-1:five_prime_utr;Parent=Msa0168650-mRNA-1 |
| chr1_4 | CDS | 51489764 | 51490108 | 51489764 | ID=Msa0168650-mRNA-1:cds;Parent=Msa0168650-mRNA-1 |
| chr1_4 | CDS | 51489445 | 51489567 | 51489445 | ID=Msa0168650-mRNA-1:cds;Parent=Msa0168650-mRNA-1 |
| chr1_4 | CDS | 51487822 | 51488208 | 51487822 | ID=Msa0168650-mRNA-1:cds;Parent=Msa0168650-mRNA-1 |
| chr1_4 | CDS | 51487309 | 51487342 | 51487309 | ID=Msa0168650-mRNA-1:cds;Parent=Msa0168650-mRNA-1 |
| chr1_4 | CDS | 51486972 | 51487214 | 51486972 | ID=Msa0168650-mRNA-1:cds;Parent=Msa0168650-mRNA-1 |
| chr1_4 | CDS | 51486827 | 51486876 | 51486827 | ID=Msa0168650-mRNA-1:cds;Parent=Msa0168650-mRNA-1 |
| chr1_4 | CDS | 51486686 | 51486743 | 51486686 | ID=Msa0168650-mRNA-1:cds;Parent=Msa0168650-mRNA-1 |
| chr1_4 | CDS | 51486386 | 51486600 | 51486386 | ID=Msa0168650-mRNA-1:cds;Parent=Msa0168650-mRNA-1 |
| chr1_4 | three_prime_UTR | 51486204 | 51486385 | 51486204 | ID=Msa0168650-mRNA-1:three_prime_utr;Parent=Msa0168650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
