AlfalfaGEDB | Msa0870640

M. sativa cultivar zhongmu-4 / Msa0870640

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0870640	XP_003618425.2	96.078	102	4	0	1	102	82	183	1.19e-64	203

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0870640	A0A396HBA9	96.078	102	4	0	1	102	82	183	5.67e-65	203

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000190	Msa0870640	0.828377	9.299028e-55	-8.615850e-47
Msa0003700	Msa0870640	0.800548	1.368509e-48	-8.615850e-47
Msa0017510	Msa0870640	0.839304	1.716225e-57	-8.615850e-47
Msa0028640	Msa0870640	0.825490	4.555380e-54	-8.615850e-47
Msa0050390	Msa0870640	0.804360	2.242497e-49	-8.615850e-47
Msa0074240	Msa0870640	0.818824	1.602428e-52	-8.615850e-47
Msa0076250	Msa0870640	0.803195	3.914106e-49	-8.615850e-47
Msa0079380	Msa0870640	0.801937	7.112906e-49	-8.615850e-47
Msa0089630	Msa0870640	0.806812	6.858971e-50	-8.615850e-47
Msa0094140	Msa0870640	0.812179	4.829535e-51	-8.615850e-47
Msa0110970	Msa0870640	0.808200	3.480913e-50	-8.615850e-47
Msa0120400	Msa0870640	0.805663	1.197125e-49	-8.615850e-47
Msa0616220	Msa0870640	0.802042	6.768042e-49	-8.615850e-47
Msa0627450	Msa0870640	0.809470	1.862303e-50	-8.615850e-47
Msa0639430	Msa0870640	0.806669	7.354217e-50	-8.615850e-47
Msa0648880	Msa0870640	0.811404	7.122064e-51	-8.615850e-47
Msa0657970	Msa0870640	0.834016	3.823830e-56	-8.615850e-47
Msa0669320	Msa0870640	0.817347	3.456592e-52	-8.615850e-47
Msa0682330	Msa0870640	0.802595	5.206311e-49	-8.615850e-47
Msa0683510	Msa0870640	0.818112	2.323649e-52	-8.615850e-47
Msa0691380	Msa0870640	0.818806	1.617122e-52	-8.615850e-47
Msa0727710	Msa0870640	0.818387	2.012559e-52	-8.615850e-47
Msa0730430	Msa0870640	0.800520	1.386949e-48	-8.615850e-47
Msa0731940	Msa0870640	0.811660	6.263967e-51	-8.615850e-47
Msa0733390	Msa0870640	0.801321	9.514886e-49	-8.615850e-47
Msa0743890	Msa0870640	0.827237	1.747959e-54	-8.615850e-47
Msa0767300	Msa0870640	0.817903	2.590315e-52	-8.615850e-47
Msa0810220	Msa0870640	0.806910	6.539408e-50	-8.615850e-47
Msa0816150	Msa0870640	0.809684	1.675209e-50	-8.615850e-47
Msa0822870	Msa0870640	0.813901	2.024443e-51	-8.615850e-47
Msa0824660	Msa0870640	0.809220	2.107222e-50	-8.615850e-47
Msa0824840	Msa0870640	0.812177	4.833491e-51	-8.615850e-47
Msa0828560	Msa0870640	0.828807	7.319273e-55	-8.615850e-47
Msa0124060	Msa0870640	0.806877	6.646429e-50	-8.615850e-47
Msa0139060	Msa0870640	0.848308	6.660156e-60	-8.615850e-47
Msa0157290	Msa0870640	0.840194	1.006722e-57	-8.615850e-47
Msa0168500	Msa0870640	0.810949	8.935222e-51	-8.615850e-47
Msa0200260	Msa0870640	0.804230	2.387297e-49	-8.615850e-47
Msa0211150	Msa0870640	0.800960	1.127895e-48	-8.615850e-47
Msa0223690	Msa0870640	0.815587	8.564085e-52	-8.615850e-47
Msa0225760	Msa0870640	0.815292	9.963033e-52	-8.615850e-47
Msa0376350	Msa0870640	0.805134	1.545533e-49	-8.615850e-47
Msa0378720	Msa0870640	0.803807	2.922974e-49	-8.615850e-47
Msa0392510	Msa0870640	0.802561	5.293111e-49	-8.615850e-47
Msa0393080	Msa0870640	0.802344	5.866691e-49	-8.615850e-47
Msa0410650	Msa0870640	0.816368	5.734573e-52	-8.615850e-47
Msa0417880	Msa0870640	0.812936	3.299432e-51	-8.615850e-47
Msa0424790	Msa0870640	0.806775	6.981868e-50	-8.615850e-47
Msa0437560	Msa0870640	0.814626	1.399915e-51	-8.615850e-47
Msa0440750	Msa0870640	0.809251	2.075039e-50	-8.615850e-47
Msa0464680	Msa0870640	0.819270	1.268571e-52	-8.615850e-47
Msa0465410	Msa0870640	0.808832	2.551459e-50	-8.615850e-47
Msa0467490	Msa0870640	0.821055	4.947651e-53	-8.615850e-47
Msa0243100	Msa0870640	0.836433	9.386350e-57	-8.615850e-47
Msa0243890	Msa0870640	0.811081	8.369109e-51	-8.615850e-47
Msa0244860	Msa0870640	0.801466	8.885108e-49	-8.615850e-47
Msa0260610	Msa0870640	0.811538	6.660492e-51	-8.615850e-47
Msa0260670	Msa0870640	0.808856	2.521498e-50	-8.615850e-47
Msa0261340	Msa0870640	0.834465	2.950077e-56	-8.615850e-47
Msa0283450	Msa0870640	0.805642	1.209816e-49	-8.615850e-47
Msa0283520	Msa0870640	0.803137	4.023227e-49	-8.615850e-47
Msa0287650	Msa0870640	0.801750	7.770321e-49	-8.615850e-47
Msa0292400	Msa0870640	0.802051	6.739379e-49	-8.615850e-47
Msa0300690	Msa0870640	0.811028	8.593785e-51	-8.615850e-47
Msa0317510	Msa0870640	0.808243	3.407784e-50	-8.615850e-47
Msa0332000	Msa0870640	0.808945	2.413060e-50	-8.615850e-47
Msa0345970	Msa0870640	0.819215	1.305678e-52	-8.615850e-47
Msa0357340	Msa0870640	0.836154	1.105215e-56	-8.615850e-47
Msa0363070	Msa0870640	0.811612	6.417538e-51	-8.615850e-47
Msa0363200	Msa0870640	0.802887	4.533022e-49	-8.615850e-47
Msa0488560	Msa0870640	0.805678	1.188626e-49	-8.615850e-47
Msa0498060	Msa0870640	0.816399	5.640969e-52	-8.615850e-47
Msa0503580	Msa0870640	0.813227	2.848455e-51	-8.615850e-47
Msa0507680	Msa0870640	0.815342	9.708891e-52	-8.615850e-47
Msa0511270	Msa0870640	0.811687	6.180785e-51	-8.615850e-47
Msa0512900	Msa0870640	0.807416	5.108014e-50	-8.615850e-47
Msa0569200	Msa0870640	0.805515	1.285941e-49	-8.615850e-47
Msa0585300	Msa0870640	0.802601	5.191318e-49	-8.615850e-47
Msa0602250	Msa0870640	0.801360	9.343406e-49	-8.615850e-47
Msa0843220	Msa0870640	0.800051	1.728067e-48	-8.615850e-47
Msa0843780	Msa0870640	-0.810726	9.985268e-51	-8.615850e-47
Msa0861870	Msa0870640	0.801736	7.821835e-49	-8.615850e-47
Msa0863930	Msa0870640	0.800965	1.125133e-48	-8.615850e-47
Msa0870640	Msa0880140	0.836637	8.326458e-57	-8.615850e-47
Msa0870640	Msa0899980	0.803137	4.023803e-49	-8.615850e-47
Msa0870640	Msa0926890	0.836083	1.152115e-56	-8.615850e-47
Msa0870640	Msa0938220	0.805469	1.315257e-49	-8.615850e-47
Msa0870640	Msa1004840	0.800649	1.305607e-48	-8.615850e-47
Msa0870640	Msa1019430	0.811002	8.706235e-51	-8.615850e-47
Msa0870640	Msa1019470	0.808912	2.452307e-50	-8.615850e-47
Msa0870640	Msa1085200	0.815068	1.117102e-51	-8.615850e-47
Msa0870640	Msa1104370	0.804197	2.424671e-49	-8.615850e-47
Msa0870640	Msa1123380	0.820116	8.129667e-53	-8.615850e-47
Msa0870640	Msa1151910	0.808660	2.776734e-50	-8.615850e-47
Msa0870640	Msa1154710	0.804326	2.279685e-49	-8.615850e-47
Msa0870640	Msa1171710	0.816852	4.466381e-52	-8.615850e-47
Msa0870640	Msa1209460	0.812620	3.867594e-51	-8.615850e-47
Msa0870640	Msa1238930	0.810447	1.147665e-50	-8.615850e-47
Msa0870640	Msa1242240	0.804245	2.369725e-49	-8.615850e-47
Msa0870640	Msa1242670	0.806289	8.841451e-50	-8.615850e-47
Msa0870640	Msa1280420	0.801707	7.929528e-49	-8.615850e-47
Msa0870640	Msa1283840	0.809390	1.937348e-50	-8.615850e-47
Msa0870640	Msa1283860	0.804603	1.995586e-49	-8.615850e-47
Msa0870640	Msa1284260	0.812588	3.931019e-51	-8.615850e-47
Msa0870640	Msa1308380	0.813598	2.360080e-51	-8.615850e-47
Msa0870640	Msa1327050	0.805886	1.074785e-49	-8.615850e-47
Msa0870640	Msa1332070	0.806439	8.221109e-50	-8.615850e-47
Msa0870640	Msa1357240	0.801460	8.912201e-49	-8.615850e-47
Msa0870640	Msa1409870	0.806370	8.502660e-50	-8.615850e-47
Msa0870640	Msa1416150	0.801789	7.630169e-49	-8.615850e-47
Msa0870640	Msa1438250	0.809953	1.466360e-50	-8.615850e-47
Msa0870640	Msa1460240	0.814826	1.264082e-51	-8.615850e-47
Msa0870640	Msa1461300	0.803811	2.916685e-49	-8.615850e-47
Msa0870640	Msa1466540	0.812120	4.974917e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0870640	MtrunA17_Chr6g0452231	96.078	102	4	0	1	102	82	183	1.09e-68	203

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0870640	AT1G69970.2	31.183	93	61	2	13	102	10	102	5.10e-11	55.1

Find 22 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTGAATTTGATTCCAAAATT+TGG	0.138977	6_1:-5198596	None:intergenic
GTAATGAATTCACCAAATTT+TGG	0.156419	6_1:+5198584	Msa0870640:three_prime_UTR
TGGAACAAGAATTGTTCTTT+TGG	0.293657	6_1:-5196776	None:intergenic
GAGAGAACATTCACATTCAT+TGG	0.313527	6_1:-5196796	None:intergenic
CACAAAGTTCATGCTTGATT+AGG	0.345017	6_1:-5198345	None:intergenic
TATACTTACCTGTTATGTAT+TGG	0.387907	6_1:-5196916	None:intergenic
TGTATTGGATCAGGTCCATT+AGG	0.413874	6_1:-5196901	None:intergenic
GACCTGATCCAATACATAAC+AGG	0.428966	6_1:+5196908	Msa0870640:CDS
GATTCATTGTTGAGATTGTA+AGG	0.433759	6_1:-5196747	None:intergenic
TTTGGTGAATTCATTACCTA+AGG	0.460538	6_1:-5198578	None:intergenic
TCTCTCTAGGCAATTAAAGT+TGG	0.465858	6_1:+5196813	Msa0870640:CDS
TACCTGTTATGTATTGGATC+AGG	0.468139	6_1:-5196910	None:intergenic
TTTGGAGCTTTGTTATCTCT+AGG	0.475754	6_1:+5196706	Msa0870640:CDS
AAAGTTCATGCTTGATTAGG+TGG	0.501220	6_1:-5198342	None:intergenic
GAAGTTCCACAACTAGTTTG+AGG	0.503241	6_1:+5198367	Msa0870640:three_prime_UTR
AGCAAGAGAAGAGTGCCTAA+TGG	0.505259	6_1:+5196886	Msa0870640:CDS
AAAATGTAAATCAAGTCCTT+AGG	0.510881	6_1:+5198562	Msa0870640:three_prime_UTR
GTGTTTCCTCAAACTAGTTG+TGG	0.531786	6_1:-5198373	None:intergenic
TGAATGTGAATGTTCTCTCT+AGG	0.540909	6_1:+5196800	Msa0870640:CDS
TGTTATCTCTAGGAATCATG+TGG	0.558782	6_1:+5196716	Msa0870640:CDS
AAGTCTAGAATCTGAATGCA+AGG	0.570259	6_1:-5196854	None:intergenic
TATATGAATTCAGGAGAGCA+AGG	0.616450	6_1:+5198307	Msa0870640:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATTTAAAAATAAAAATAAA+AGG	+	chr6_1:5197589-5197608	Msa0870640:intron	0.0%
!!	AATTTAAAAATAAAAATAAA+AGG	+	chr6_1:5197589-5197608	Msa0870640:intron	0.0%
!!	AAAAGGAAAAAAAATTAATT+AGG	+	chr6_1:5197651-5197670	Msa0870640:intron	10.0%
!!	AAAAGGAAAAAAAATTAATT+AGG	+	chr6_1:5197651-5197670	Msa0870640:intron	10.0%
!!	CATAAGAGATATAAAAAATA+TGG	+	chr6_1:5196642-5196661	Msa0870640:exon	15.0%
!!!	AAAATATGGATACTAATTTT+AGG	+	chr6_1:5196656-5196675	Msa0870640:exon	15.0%
!!!	CTATTTTAAATTGAGTTTAA+TGG	+	chr6_1:5197076-5197095	Msa0870640:intron	15.0%
!!!	GACTCTTAAAAATATTTTTA+AGG	-	chr6_1:5197114-5197133	None:intergenic	15.0%
!!!	AAAATAAAAATAAAAGGCAT+TGG	+	chr6_1:5197595-5197614	Msa0870640:intron	15.0%
!!!	AAATAAAAATAAAAGGCATT+GGG	+	chr6_1:5197596-5197615	Msa0870640:intron	15.0%
!!!	AGCTTGATTAATTTATTTTA+AGG	+	chr6_1:5197698-5197717	Msa0870640:intron	15.0%
!!!	AATTAAGTACTCTAAATTTT+AGG	+	chr6_1:5197816-5197835	Msa0870640:intron	15.0%
!!	AATATGATAAGAATTTGAAT+CGG	+	chr6_1:5197935-5197954	Msa0870640:intron	15.0%
!!	AAAAATAAAAAATTGAAAGC+CGG	+	chr6_1:5198067-5198086	Msa0870640:intron	15.0%
!!	CATAAGAGATATAAAAAATA+TGG	+	chr6_1:5196642-5196661	Msa0870640:exon	15.0%
!!!	AAAATATGGATACTAATTTT+AGG	+	chr6_1:5196656-5196675	Msa0870640:exon	15.0%
!!!	CTATTTTAAATTGAGTTTAA+TGG	+	chr6_1:5197076-5197095	Msa0870640:intron	15.0%
!!!	GACTCTTAAAAATATTTTTA+AGG	-	chr6_1:5197114-5197133	None:intergenic	15.0%
!!!	AAAATAAAAATAAAAGGCAT+TGG	+	chr6_1:5197595-5197614	Msa0870640:intron	15.0%
!!!	AAATAAAAATAAAAGGCATT+GGG	+	chr6_1:5197596-5197615	Msa0870640:intron	15.0%
!!!	AGCTTGATTAATTTATTTTA+AGG	+	chr6_1:5197698-5197717	Msa0870640:intron	15.0%
!!!	AATTAAGTACTCTAAATTTT+AGG	+	chr6_1:5197816-5197835	Msa0870640:intron	15.0%
!!	AATATGATAAGAATTTGAAT+CGG	+	chr6_1:5197935-5197954	Msa0870640:intron	15.0%
!!	AAAAATAAAAAATTGAAAGC+CGG	+	chr6_1:5198067-5198086	Msa0870640:intron	15.0%
!!!	GGTTTAGTTTTAGTTTTAAA+AGG	+	chr6_1:5196677-5196696	Msa0870640:CDS	20.0%
!!!	AGTTTTAAAAGGTTGTTTTT+TGG	+	chr6_1:5196688-5196707	Msa0870640:CDS	20.0%
!!!	AAGAGTTTTAATAAAGTTGA+AGG	+	chr6_1:5197014-5197033	Msa0870640:intron	20.0%
!!	ATATGATAAGAATTTGAATC+GGG	+	chr6_1:5197936-5197955	Msa0870640:intron	20.0%
!!!	TGGTTGAAACATTTTTAAAA+GGG	-	chr6_1:5198117-5198136	None:intergenic	20.0%
!!!	ATGGTTGAAACATTTTTAAA+AGG	-	chr6_1:5198118-5198137	None:intergenic	20.0%
!!!	TTTTAAAAATAAGTTTGAGC+TGG	-	chr6_1:5198206-5198225	None:intergenic	20.0%
!!	ATGAGAAATATATATAGACT+AGG	-	chr6_1:5198263-5198282	None:intergenic	20.0%
!!!	TGATTTACATTTTACAACAA+GGG	-	chr6_1:5198555-5198574	None:intergenic	20.0%
!!!	TTGATTTACATTTTACAACA+AGG	-	chr6_1:5198556-5198575	None:intergenic	20.0%
!!!	GGTTTAGTTTTAGTTTTAAA+AGG	+	chr6_1:5196677-5196696	Msa0870640:CDS	20.0%
!!!	AGTTTTAAAAGGTTGTTTTT+TGG	+	chr6_1:5196688-5196707	Msa0870640:CDS	20.0%
!!!	AAGAGTTTTAATAAAGTTGA+AGG	+	chr6_1:5197014-5197033	Msa0870640:intron	20.0%
!!	ATATGATAAGAATTTGAATC+GGG	+	chr6_1:5197936-5197955	Msa0870640:intron	20.0%
!!!	TGGTTGAAACATTTTTAAAA+GGG	-	chr6_1:5198117-5198136	None:intergenic	20.0%
!!!	ATGGTTGAAACATTTTTAAA+AGG	-	chr6_1:5198118-5198137	None:intergenic	20.0%
!!!	TTTTAAAAATAAGTTTGAGC+TGG	-	chr6_1:5198206-5198225	None:intergenic	20.0%
!!	ATGAGAAATATATATAGACT+AGG	-	chr6_1:5198263-5198282	None:intergenic	20.0%
!!!	TGATTTACATTTTACAACAA+GGG	-	chr6_1:5198555-5198574	None:intergenic	20.0%
!!!	TTGATTTACATTTTACAACA+AGG	-	chr6_1:5198556-5198575	None:intergenic	20.0%
!	TATACTTACCTGTTATGTAT+TGG	-	chr6_1:5196919-5196938	None:intergenic	25.0%
!	ATTTCTTCACATAATATGCA+TGG	+	chr6_1:5196953-5196972	Msa0870640:intron	25.0%
!	TTGAAACGAAAAGGAAATTA+AGG	+	chr6_1:5196985-5197004	Msa0870640:intron	25.0%
!	TGAAACGAAAAGGAAATTAA+GGG	+	chr6_1:5196986-5197005	Msa0870640:intron	25.0%
!	ACTATTCATCTTATCTTGTT+TGG	-	chr6_1:5197048-5197067	None:intergenic	25.0%
!	GAGTCTTCTAATCATATTTA+AGG	+	chr6_1:5197129-5197148	Msa0870640:intron	25.0%
!	AAATTTAGAAGCAGAAAATC+TGG	-	chr6_1:5197340-5197359	None:intergenic	25.0%
!	GCATAAGGAATATAATTGAA+AGG	-	chr6_1:5197442-5197461	None:intergenic	25.0%
!	TAATCAAGCTTTCCATAAAA+AGG	-	chr6_1:5197688-5197707	None:intergenic	25.0%
!	TTTCGAATTAAGTCTTGAAT+TGG	-	chr6_1:5197762-5197781	None:intergenic	25.0%
!	TATGATAAGAATTTGAATCG+GGG	+	chr6_1:5197937-5197956	Msa0870640:intron	25.0%
!	TTGATTCATCTGATTTAACT+AGG	+	chr6_1:5197982-5198001	Msa0870640:intron	25.0%
!	TGATTCATCTGATTTAACTA+GGG	+	chr6_1:5197983-5198002	Msa0870640:intron	25.0%
!	TGATTTAACTAGGGTTAAAT+TGG	+	chr6_1:5197992-5198011	Msa0870640:intron	25.0%
!	AAAAATCGCAATTTCTTCTA+TGG	-	chr6_1:5198398-5198417	None:intergenic	25.0%
!!!	TAGTATTGCTAGTGTTTTTA+AGG	+	chr6_1:5198465-5198484	Msa0870640:three_prime_UTR	25.0%
!	AAAATGTAAATCAAGTCCTT+AGG	+	chr6_1:5198562-5198581	Msa0870640:three_prime_UTR	25.0%
!!	GTAATGAATTCACCAAATTT+TGG	+	chr6_1:5198584-5198603	Msa0870640:three_prime_UTR	25.0%
!	CTGAATTTGATTCCAAAATT+TGG	-	chr6_1:5198599-5198618	None:intergenic	25.0%
!!!	CAAATTTTGGAATCAAATTC+AGG	+	chr6_1:5198597-5198616	Msa0870640:three_prime_UTR	25.0%
!	TATACTTACCTGTTATGTAT+TGG	-	chr6_1:5196919-5196938	None:intergenic	25.0%
!	ATTTCTTCACATAATATGCA+TGG	+	chr6_1:5196953-5196972	Msa0870640:intron	25.0%
!	TTGAAACGAAAAGGAAATTA+AGG	+	chr6_1:5196985-5197004	Msa0870640:intron	25.0%
!	TGAAACGAAAAGGAAATTAA+GGG	+	chr6_1:5196986-5197005	Msa0870640:intron	25.0%
!	ACTATTCATCTTATCTTGTT+TGG	-	chr6_1:5197048-5197067	None:intergenic	25.0%
!	GAGTCTTCTAATCATATTTA+AGG	+	chr6_1:5197129-5197148	Msa0870640:intron	25.0%
!	AAATTTAGAAGCAGAAAATC+TGG	-	chr6_1:5197340-5197359	None:intergenic	25.0%
!	GCATAAGGAATATAATTGAA+AGG	-	chr6_1:5197442-5197461	None:intergenic	25.0%
!	TAATCAAGCTTTCCATAAAA+AGG	-	chr6_1:5197688-5197707	None:intergenic	25.0%
!	TTTCGAATTAAGTCTTGAAT+TGG	-	chr6_1:5197762-5197781	None:intergenic	25.0%
!	TATGATAAGAATTTGAATCG+GGG	+	chr6_1:5197937-5197956	Msa0870640:intron	25.0%
!	TTGATTCATCTGATTTAACT+AGG	+	chr6_1:5197982-5198001	Msa0870640:intron	25.0%
!	TGATTCATCTGATTTAACTA+GGG	+	chr6_1:5197983-5198002	Msa0870640:intron	25.0%
!	TGATTTAACTAGGGTTAAAT+TGG	+	chr6_1:5197992-5198011	Msa0870640:intron	25.0%
!	AAAAATCGCAATTTCTTCTA+TGG	-	chr6_1:5198398-5198417	None:intergenic	25.0%
!!!	TAGTATTGCTAGTGTTTTTA+AGG	+	chr6_1:5198465-5198484	Msa0870640:three_prime_UTR	25.0%
!	AAAATGTAAATCAAGTCCTT+AGG	+	chr6_1:5198562-5198581	Msa0870640:three_prime_UTR	25.0%
!!	GTAATGAATTCACCAAATTT+TGG	+	chr6_1:5198584-5198603	Msa0870640:three_prime_UTR	25.0%
!	CTGAATTTGATTCCAAAATT+TGG	-	chr6_1:5198599-5198618	None:intergenic	25.0%
	GATTCATTGTTGAGATTGTA+AGG	-	chr6_1:5196750-5196769	None:intergenic	30.0%
!!	CAAGAATTGTTCTTTTGGTT+TGG	-	chr6_1:5196774-5196793	None:intergenic	30.0%
!	TGGAACAAGAATTGTTCTTT+TGG	-	chr6_1:5196779-5196798	None:intergenic	30.0%
!!	CTTAGTACTTTGAAACGAAA+AGG	+	chr6_1:5196976-5196995	Msa0870640:intron	30.0%
	AACCGACATGAAATATATGA+CGG	+	chr6_1:5197205-5197224	Msa0870640:intron	30.0%
	TGAAGAAATGACGCAAAATT+TGG	-	chr6_1:5197269-5197288	None:intergenic	30.0%
	CAATTATATTCCTTATGCCT+AGG	+	chr6_1:5197444-5197463	Msa0870640:intron	30.0%
!	GCACAATTTTTCTTTTGCTA+AGG	+	chr6_1:5197470-5197489	Msa0870640:intron	30.0%
	AACTGTACCACTTTAGTTAT+TGG	+	chr6_1:5197624-5197643	Msa0870640:intron	30.0%
	TTTCTCTCCAATAACTAAAG+TGG	-	chr6_1:5197634-5197653	None:intergenic	30.0%
	CTTTAGTTATTGGAGAGAAA+AGG	+	chr6_1:5197634-5197653	Msa0870640:intron	30.0%
!	GTAGCTCTTTTTCCTTTTTA+TGG	+	chr6_1:5197673-5197692	Msa0870640:intron	30.0%
	TGGATTGTTGAATTCAAATG+TGG	-	chr6_1:5197742-5197761	None:intergenic	30.0%
	GACTTAATTCGAAACCAAAA+TGG	+	chr6_1:5197768-5197787	Msa0870640:intron	30.0%
!	ATAAGCAGCAAATTCCATTT+TGG	-	chr6_1:5197785-5197804	None:intergenic	30.0%
	AATGATGGTAATCATCACAA+CGG	-	chr6_1:5197844-5197863	None:intergenic	30.0%
	GGTTTCTTATGCTATAATGA+TGG	-	chr6_1:5197859-5197878	None:intergenic	30.0%
!	ATTCTCTATTCAAGTTAACC+CGG	+	chr6_1:5198180-5198199	Msa0870640:intron	30.0%
	GTGTTGTGATATATGAATTC+AGG	+	chr6_1:5198298-5198317	Msa0870640:intron	30.0%
!!!	GAAATTGCGATTTTTTTGTG+TGG	+	chr6_1:5198403-5198422	Msa0870640:three_prime_UTR	30.0%
!	TTTACATTTTACAACAAGGG+AGG	-	chr6_1:5198552-5198571	None:intergenic	30.0%
	TTTGGTGAATTCATTACCTA+AGG	-	chr6_1:5198581-5198600	None:intergenic	30.0%
	GATTCATTGTTGAGATTGTA+AGG	-	chr6_1:5196750-5196769	None:intergenic	30.0%
!!	CAAGAATTGTTCTTTTGGTT+TGG	-	chr6_1:5196774-5196793	None:intergenic	30.0%
!	TGGAACAAGAATTGTTCTTT+TGG	-	chr6_1:5196779-5196798	None:intergenic	30.0%
!!	CTTAGTACTTTGAAACGAAA+AGG	+	chr6_1:5196976-5196995	Msa0870640:intron	30.0%
	AACCGACATGAAATATATGA+CGG	+	chr6_1:5197205-5197224	Msa0870640:intron	30.0%
	TGAAGAAATGACGCAAAATT+TGG	-	chr6_1:5197269-5197288	None:intergenic	30.0%
	CAATTATATTCCTTATGCCT+AGG	+	chr6_1:5197444-5197463	Msa0870640:intron	30.0%
!	GCACAATTTTTCTTTTGCTA+AGG	+	chr6_1:5197470-5197489	Msa0870640:intron	30.0%
	AACTGTACCACTTTAGTTAT+TGG	+	chr6_1:5197624-5197643	Msa0870640:intron	30.0%
	TTTCTCTCCAATAACTAAAG+TGG	-	chr6_1:5197634-5197653	None:intergenic	30.0%
	CTTTAGTTATTGGAGAGAAA+AGG	+	chr6_1:5197634-5197653	Msa0870640:intron	30.0%
!	GTAGCTCTTTTTCCTTTTTA+TGG	+	chr6_1:5197673-5197692	Msa0870640:intron	30.0%
	TGGATTGTTGAATTCAAATG+TGG	-	chr6_1:5197742-5197761	None:intergenic	30.0%
	GACTTAATTCGAAACCAAAA+TGG	+	chr6_1:5197768-5197787	Msa0870640:intron	30.0%
!	ATAAGCAGCAAATTCCATTT+TGG	-	chr6_1:5197785-5197804	None:intergenic	30.0%
	AATGATGGTAATCATCACAA+CGG	-	chr6_1:5197844-5197863	None:intergenic	30.0%
	GGTTTCTTATGCTATAATGA+TGG	-	chr6_1:5197859-5197878	None:intergenic	30.0%
!	ATTCTCTATTCAAGTTAACC+CGG	+	chr6_1:5198180-5198199	Msa0870640:intron	30.0%
	GTGTTGTGATATATGAATTC+AGG	+	chr6_1:5198298-5198317	Msa0870640:intron	30.0%
!!!	GAAATTGCGATTTTTTTGTG+TGG	+	chr6_1:5198403-5198422	Msa0870640:three_prime_UTR	30.0%
!	TTTACATTTTACAACAAGGG+AGG	-	chr6_1:5198552-5198571	None:intergenic	30.0%
	TTTGGTGAATTCATTACCTA+AGG	-	chr6_1:5198581-5198600	None:intergenic	30.0%
!!	TTTGGAGCTTTGTTATCTCT+AGG	+	chr6_1:5196706-5196725	Msa0870640:CDS	35.0%
!	TGTTATCTCTAGGAATCATG+TGG	+	chr6_1:5196716-5196735	Msa0870640:CDS	35.0%
	GAGAGAACATTCACATTCAT+TGG	-	chr6_1:5196799-5196818	None:intergenic	35.0%
	TGAATGTGAATGTTCTCTCT+AGG	+	chr6_1:5196800-5196819	Msa0870640:CDS	35.0%
	TCTCTCTAGGCAATTAAAGT+TGG	+	chr6_1:5196813-5196832	Msa0870640:CDS	35.0%
!	AAGTCTAGAATCTGAATGCA+AGG	-	chr6_1:5196857-5196876	None:intergenic	35.0%
	TACCTGTTATGTATTGGATC+AGG	-	chr6_1:5196913-5196932	None:intergenic	35.0%
	TAGCGCTATATGGTTAGATA+TGG	+	chr6_1:5197168-5197187	Msa0870640:intron	35.0%
	TGGTTAGATATGGTTAGTGT+CGG	+	chr6_1:5197178-5197197	Msa0870640:intron	35.0%
	TTTATAGCGTCAGTTGTAAC+CGG	-	chr6_1:5197315-5197334	None:intergenic	35.0%
	AAGAAAAATTGTGCAAGCCT+AGG	-	chr6_1:5197464-5197483	None:intergenic	35.0%
!	TTTCTTTTGCTAAGGAAAGC+TGG	+	chr6_1:5197478-5197497	Msa0870640:intron	35.0%
	ATGATGGTAATCATCACAAC+GGG	-	chr6_1:5197843-5197862	None:intergenic	35.0%
	AACCATATTGCAGTGTAAGT+AGG	+	chr6_1:5198132-5198151	Msa0870640:intron	35.0%
	ATCCTACTTACACTGCAATA+TGG	-	chr6_1:5198137-5198156	None:intergenic	35.0%
	AAAAATAAGTTTGAGCTGGC+CGG	-	chr6_1:5198202-5198221	None:intergenic	35.0%
	TATATGAATTCAGGAGAGCA+AGG	+	chr6_1:5198307-5198326	Msa0870640:intron	35.0%
	AAAGTTCATGCTTGATTAGG+TGG	-	chr6_1:5198345-5198364	None:intergenic	35.0%
	CACAAAGTTCATGCTTGATT+AGG	-	chr6_1:5198348-5198367	None:intergenic	35.0%
!!	TTTGGAGCTTTGTTATCTCT+AGG	+	chr6_1:5196706-5196725	Msa0870640:CDS	35.0%
!	TGTTATCTCTAGGAATCATG+TGG	+	chr6_1:5196716-5196735	Msa0870640:CDS	35.0%
	GAGAGAACATTCACATTCAT+TGG	-	chr6_1:5196799-5196818	None:intergenic	35.0%
	TGAATGTGAATGTTCTCTCT+AGG	+	chr6_1:5196800-5196819	Msa0870640:CDS	35.0%
	TCTCTCTAGGCAATTAAAGT+TGG	+	chr6_1:5196813-5196832	Msa0870640:CDS	35.0%
!	AAGTCTAGAATCTGAATGCA+AGG	-	chr6_1:5196857-5196876	None:intergenic	35.0%
	TACCTGTTATGTATTGGATC+AGG	-	chr6_1:5196913-5196932	None:intergenic	35.0%
	TAGCGCTATATGGTTAGATA+TGG	+	chr6_1:5197168-5197187	Msa0870640:intron	35.0%
	TGGTTAGATATGGTTAGTGT+CGG	+	chr6_1:5197178-5197197	Msa0870640:intron	35.0%
	TTTATAGCGTCAGTTGTAAC+CGG	-	chr6_1:5197315-5197334	None:intergenic	35.0%
	AAGAAAAATTGTGCAAGCCT+AGG	-	chr6_1:5197464-5197483	None:intergenic	35.0%
!	TTTCTTTTGCTAAGGAAAGC+TGG	+	chr6_1:5197478-5197497	Msa0870640:intron	35.0%
	ATGATGGTAATCATCACAAC+GGG	-	chr6_1:5197843-5197862	None:intergenic	35.0%
	AACCATATTGCAGTGTAAGT+AGG	+	chr6_1:5198132-5198151	Msa0870640:intron	35.0%
	ATCCTACTTACACTGCAATA+TGG	-	chr6_1:5198137-5198156	None:intergenic	35.0%
	AAAAATAAGTTTGAGCTGGC+CGG	-	chr6_1:5198202-5198221	None:intergenic	35.0%
	TATATGAATTCAGGAGAGCA+AGG	+	chr6_1:5198307-5198326	Msa0870640:intron	35.0%
	AAAGTTCATGCTTGATTAGG+TGG	-	chr6_1:5198345-5198364	None:intergenic	35.0%
	CACAAAGTTCATGCTTGATT+AGG	-	chr6_1:5198348-5198367	None:intergenic	35.0%
	TGTATTGGATCAGGTCCATT+AGG	-	chr6_1:5196904-5196923	None:intergenic	40.0%
	GACCTGATCCAATACATAAC+AGG	+	chr6_1:5196908-5196927	Msa0870640:CDS	40.0%
	TACAACGAAGTAGCGCTATA+TGG	+	chr6_1:5197158-5197177	Msa0870640:intron	40.0%
	GGCCGTCATATATTTCATGT+CGG	-	chr6_1:5197210-5197229	None:intergenic	40.0%
	TTTAGCAACGTTGCACACAA+TGG	-	chr6_1:5197231-5197250	None:intergenic	40.0%
	AAATGACGCAAAATTTGGCG+CGG	-	chr6_1:5197264-5197283	None:intergenic	40.0%
	TTCTTCACCTGTCAGAAGTT+AGG	+	chr6_1:5197282-5197301	Msa0870640:intron	40.0%
!!	ATTTGAATCGGGGAAGCATT+TGG	+	chr6_1:5197947-5197966	Msa0870640:intron	40.0%
	AAAATAAGTTTGAGCTGGCC+GGG	-	chr6_1:5198201-5198220	None:intergenic	40.0%
!	GAAGTTCCACAACTAGTTTG+AGG	+	chr6_1:5198367-5198386	Msa0870640:three_prime_UTR	40.0%
	GTGTTTCCTCAAACTAGTTG+TGG	-	chr6_1:5198376-5198395	None:intergenic	40.0%
!	CATTTTACAACAAGGGAGGA+AGG	-	chr6_1:5198548-5198567	None:intergenic	40.0%
	TGTATTGGATCAGGTCCATT+AGG	-	chr6_1:5196904-5196923	None:intergenic	40.0%
	GACCTGATCCAATACATAAC+AGG	+	chr6_1:5196908-5196927	Msa0870640:CDS	40.0%
	TACAACGAAGTAGCGCTATA+TGG	+	chr6_1:5197158-5197177	Msa0870640:intron	40.0%
	GGCCGTCATATATTTCATGT+CGG	-	chr6_1:5197210-5197229	None:intergenic	40.0%
	TTTAGCAACGTTGCACACAA+TGG	-	chr6_1:5197231-5197250	None:intergenic	40.0%
	AAATGACGCAAAATTTGGCG+CGG	-	chr6_1:5197264-5197283	None:intergenic	40.0%
	TTCTTCACCTGTCAGAAGTT+AGG	+	chr6_1:5197282-5197301	Msa0870640:intron	40.0%
!!	ATTTGAATCGGGGAAGCATT+TGG	+	chr6_1:5197947-5197966	Msa0870640:intron	40.0%
	AAAATAAGTTTGAGCTGGCC+GGG	-	chr6_1:5198201-5198220	None:intergenic	40.0%
!	GAAGTTCCACAACTAGTTTG+AGG	+	chr6_1:5198367-5198386	Msa0870640:three_prime_UTR	40.0%
	GTGTTTCCTCAAACTAGTTG+TGG	-	chr6_1:5198376-5198395	None:intergenic	40.0%
!	CATTTTACAACAAGGGAGGA+AGG	-	chr6_1:5198548-5198567	None:intergenic	40.0%
!!	AGCAAGAGAAGAGTGCCTAA+TGG	+	chr6_1:5196886-5196905	Msa0870640:CDS	45.0%
	CGCTAATCCTAACTTCTGAC+AGG	-	chr6_1:5197292-5197311	None:intergenic	45.0%
!	TCAGAAGTTAGGATTAGCGC+CGG	+	chr6_1:5197293-5197312	Msa0870640:intron	45.0%
	ATTGTGCAAGCCTAGGCATA+AGG	-	chr6_1:5197457-5197476	None:intergenic	45.0%
	ACGACATCATGTGCAATGCT+TGG	-	chr6_1:5197880-5197899	None:intergenic	45.0%
!!	AGCAAGAGAAGAGTGCCTAA+TGG	+	chr6_1:5196886-5196905	Msa0870640:CDS	45.0%
	CGCTAATCCTAACTTCTGAC+AGG	-	chr6_1:5197292-5197311	None:intergenic	45.0%
!	TCAGAAGTTAGGATTAGCGC+CGG	+	chr6_1:5197293-5197312	Msa0870640:intron	45.0%
	ATTGTGCAAGCCTAGGCATA+AGG	-	chr6_1:5197457-5197476	None:intergenic	45.0%
	ACGACATCATGTGCAATGCT+TGG	-	chr6_1:5197880-5197899	None:intergenic	45.0%
!	CCGTGCACGATTGATTCAAC+CGG	-	chr6_1:5198089-5198108	None:intergenic	50.0%
	CCGGTTGAATCAATCGTGCA+CGG	+	chr6_1:5198086-5198105	Msa0870640:intron	50.0%
!	CCGTGCACGATTGATTCAAC+CGG	-	chr6_1:5198089-5198108	None:intergenic	50.0%
	CCGGTTGAATCAATCGTGCA+CGG	+	chr6_1:5198086-5198105	Msa0870640:intron	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	5196636	5198618	5196636	ID=Msa0870640;Name=Msa0870640
chr6_1	mRNA	5196636	5198618	5196636	ID=Msa0870640-mRNA-1;Parent=Msa0870640;Name=Msa0870640-mRNA-1;_AED=0.00;_eAED=0.00;_QI=25\|1\|1\|1\|1\|1\|2\|259\|102
chr6_1	exon	5196636	5196929	5196636	ID=Msa0870640-mRNA-1:exon:1671;Parent=Msa0870640-mRNA-1
chr6_1	exon	5198320	5198618	5198320	ID=Msa0870640-mRNA-1:exon:1672;Parent=Msa0870640-mRNA-1
chr6_1	five_prime_UTR	5196636	5196660	5196636	ID=Msa0870640-mRNA-1:five_prime_utr;Parent=Msa0870640-mRNA-1
chr6_1	CDS	5196661	5196929	5196661	ID=Msa0870640-mRNA-1:cds;Parent=Msa0870640-mRNA-1
chr6_1	CDS	5198320	5198359	5198320	ID=Msa0870640-mRNA-1:cds;Parent=Msa0870640-mRNA-1
chr6_1	three_prime_UTR	5198360	5198618	5198360	ID=Msa0870640-mRNA-1:three_prime_utr;Parent=Msa0870640-mRNA-1

Gene Sequence	>Msa0870640 ATGGATACTAATTTTAGGTTTAGTTTTAGTTTTAAAAGGTTGTTTTTTGGAGCTTTGTTATCTCTAGGAATCATGTGGTTTATGTTCCTTACAATCTCAACAATGAATCACCAAACCAAAAGAACAATTCTTGTTCCAATGAATGTGAATGTTCTCTCTAGGCAATTAAAGTTGGTTAGCATGCAGAGACATGCCTTGCATTCAGATTCTAGACTTGTCATTGTTAGCAAGAGAAGAGTGCCTAATGGACCTGATCCAATACATAACAGGAGAGCAAGGAAATTTAGACAACCACCTAATCAAGCATGA
Protein sequence	>Msa0870640 MDTNFRFSFSFKRLFFGALLSLGIMWFMFLTISTMNHQTKRTILVPMNVNVLSRQLKLVSMQRHALHSDSRLVIVSKRRVPNGPDPIHNRRARKFRQPPNQA*