AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0841320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841320 MtrunA17_Chr5g0410711 98.753 802 9 1 1 802 1 801 0.0 1653
Msa0841320 MtrunA17_Chr6g0481041 47.425 738 363 14 61 783 1 728 0.0 662
Msa0841320 MtrunA17_Chr2g0322731 44.293 736 357 14 57 779 70 765 0.0 619
Msa0841320 MtrunA17_Chr8g0350321 43.909 747 391 17 49 782 79 810 0.0 615
Msa0841320 MtrunA17_Chr4g0024351 45.649 701 340 12 89 779 60 729 0.0 613
Msa0841320 MtrunA17_Chr7g0246631 44.307 729 367 16 66 779 70 774 0.0 604
Msa0841320 MtrunA17_Chr1g0203671 41.407 739 405 13 57 779 63 789 0.0 573
Msa0841320 MtrunA17_Chr6g0472471 41.543 739 395 16 63 779 42 765 7.68e-176 525
Msa0841320 MtrunA17_Chr2g0331581 38.020 697 372 11 93 779 143 789 2.18e-160 486
Msa0841320 MtrunA17_Chr7g0224451 41.529 484 215 9 89 565 16 438 3.25e-120 369
Msa0841320 MtrunA17_Chr5g0394111 36.346 509 295 12 282 779 156 646 4.55e-99 321
Msa0841320 MtrunA17_Chr5g0394111 45.390 141 72 3 71 211 18 153 3.98e-27 117
Msa0841320 MtrunA17_Chr2g0292731 34.170 518 300 14 282 782 58 551 1.28e-89 293
Msa0841320 MtrunA17_Chr2g0292741 33.333 516 302 15 282 782 50 538 3.32e-84 278
Msa0841320 MtrunA17_Chr7g0224481 40.789 380 163 7 89 462 16 339 1.58e-82 267
Msa0841320 MtrunA17_Chr7g0224491 42.902 317 155 8 465 779 1 293 2.07e-72 239
Msa0841320 MtrunA17_Chr2g0292761 32.847 548 290 22 170 705 3 484 1.45e-70 241
Msa0841320 MtrunA17_Chr5g0419821 50.806 124 59 2 88 210 32 154 8.92e-34 127
Msa0841320 MtrunA17_Chr2g0319671 33.028 218 121 6 341 553 104 301 1.45e-26 110
Msa0841320 MtrunA17_Chr2g0319691 40.157 127 64 3 401 523 1 119 1.88e-20 89.0
Msa0841320 MtrunA17_Chr2g0304191 32.847 137 80 3 295 425 1 131 1.20e-19 85.9
Msa0841320 MtrunA17_Chr2g0319681 27.615 239 155 5 545 779 1 225 1.33e-18 86.3
Msa0841320 MtrunA17_Chr7g0224431 32.515 163 67 3 310 472 1 120 1.44e-17 79.7
Msa0841320 MtrunA17_Chr1g0205981 33.846 195 97 8 144 329 1 172 7.95e-17 79.7
Msa0841320 MtrunA17_Chr2g0319701 28.151 238 153 8 545 779 1 223 2.89e-15 76.3
Msa0841320 MtrunA17_Chr7g0224461 38.333 120 67 2 660 779 2 114 4.45e-14 69.3
Msa0841320 MtrunA17_Chr4g0055851 35.115 131 84 1 48 177 75 205 7.34e-14 72.8
Msa0841320 MtrunA17_Chr7g0265521 36.937 111 64 2 77 184 51 158 1.84e-11 65.1
Msa0841320 MtrunA17_Chr4g0028991 34.694 98 56 2 92 181 28 125 2.31e-11 67.8
Msa0841320 MtrunA17_Chr7g0258831 31.496 127 84 1 65 188 130 256 6.40e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841320 AT5G46880.3 55.516 834 287 21 8 782 1 809 0.0 848
Msa0841320 AT5G46880.1 55.516 834 287 21 8 782 1 809 0.0 848
Msa0841320 AT5G46880.2 55.516 834 287 21 8 782 1 809 0.0 848
Msa0841320 AT4G17710.1 48.593 782 311 14 13 785 10 709 0.0 669
Msa0841320 AT4G04890.2 44.329 767 384 14 34 790 7 740 0.0 649
Msa0841320 AT4G04890.1 44.329 767 384 14 34 790 7 740 0.0 649
Msa0841320 AT1G05230.8 44.669 741 353 16 51 783 29 720 0.0 630
Msa0841320 AT1G05230.4 44.669 741 353 16 51 783 29 720 0.0 630
Msa0841320 AT1G05230.9 44.669 741 353 16 51 783 29 720 0.0 630
Msa0841320 AT1G05230.10 44.669 741 353 16 51 783 29 720 0.0 630
Msa0841320 AT1G05230.7 44.669 741 353 16 51 783 29 720 0.0 630
Msa0841320 AT1G05230.11 44.669 741 353 16 51 783 29 720 0.0 630
Msa0841320 AT1G05230.2 44.669 741 353 16 51 783 29 720 0.0 630
Msa0841320 AT1G05230.6 44.669 741 353 16 51 783 29 720 0.0 630
Msa0841320 AT1G05230.5 44.669 741 353 16 51 783 29 720 0.0 630
Msa0841320 AT1G05230.1 44.669 741 353 16 51 783 29 720 0.0 630
Msa0841320 AT1G05230.3 44.399 741 353 16 51 783 29 718 0.0 626
Msa0841320 AT4G21750.2 43.233 761 376 14 55 780 19 758 0.0 619
Msa0841320 AT4G21750.1 43.233 761 376 14 55 780 19 758 0.0 619
Msa0841320 AT4G21750.3 43.233 761 376 14 55 780 19 758 0.0 619
Msa0841320 AT4G21750.4 43.233 761 376 14 55 780 19 758 0.0 619
Msa0841320 AT1G73360.1 45.775 710 346 14 89 783 32 717 0.0 596
Msa0841320 AT1G17920.2 44.628 726 339 18 75 783 7 686 0.0 576
Msa0841320 AT1G17920.1 44.628 726 339 18 75 783 7 686 0.0 576
Msa0841320 AT4G00730.1 43.306 732 379 18 55 782 103 802 0.0 575
Msa0841320 AT3G61150.1 40.721 749 391 17 63 783 85 808 0.0 557
Msa0841320 AT1G05230.12 46.470 609 286 13 51 651 29 605 0.0 545
Msa0841320 AT2G32370.1 38.429 713 381 15 75 776 52 717 2.61e-157 476
Msa0841320 AT5G52170.3 39.162 692 342 17 93 779 61 678 1.20e-155 470
Msa0841320 AT5G52170.1 39.162 692 342 17 93 779 61 678 1.20e-155 470
Msa0841320 AT5G52170.2 38.905 694 346 17 93 779 61 683 4.10e-155 469
Msa0841320 AT1G79840.3 37.642 704 364 16 89 779 43 684 2.22e-149 454
Msa0841320 AT1G79840.6 37.642 704 364 16 89 779 43 684 2.22e-149 454
Msa0841320 AT1G79840.1 37.642 704 364 16 89 779 101 742 6.30e-149 455
Msa0841320 AT1G79840.2 37.642 704 364 16 89 779 130 771 3.99e-148 454
Msa0841320 AT3G03260.1 35.397 743 407 18 61 779 1 694 3.47e-137 422
Msa0841320 AT4G00730.2 46.809 470 231 11 55 524 103 553 2.00e-136 416
Msa0841320 AT5G17320.1 33.827 742 425 18 72 779 6 715 2.61e-124 390
Msa0841320 AT1G79840.4 38.448 567 292 13 89 645 101 620 1.22e-122 382
Msa0841320 AT1G34650.1 34.247 730 410 24 84 779 12 705 3.94e-113 360
Msa0841320 AT4G25530.1 31.356 708 416 13 83 779 34 682 1.40e-112 358
Msa0841320 AT3G03260.2 36.731 569 319 13 61 618 1 539 4.67e-111 349
Msa0841320 AT1G79840.5 39.456 441 215 10 89 523 101 495 2.45e-93 302
Msa0841320 AT5G07260.1 25.714 595 347 20 154 736 9 520 1.55e-39 154
Msa0841320 AT5G07260.2 25.546 595 343 21 154 736 9 515 4.09e-39 153
Msa0841320 AT5G60690.1 35.714 98 55 2 92 181 25 122 1.66e-11 68.6
Msa0841320 AT4G26920.1 25.000 232 153 10 297 523 74 289 2.94e-11 67.0

Find 231 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATACGCTTCCATTTCT+TGG 0.178284 5_4:-17446607 None:intergenic
AGAGGACCTCCTGCAGTATT+TGG 0.204163 5_4:-17449998 None:intergenic
AATTGTTCCTTCCTCCCTTT+TGG 0.214533 5_4:+17451508 Msa0841320:three_prime_UTR
TTCAGTCTTTGTTTATCATC+TGG 0.234084 5_4:-17446959 None:intergenic
ATGTATAATGGGACCTGATA+TGG 0.242844 5_4:+17447830 Msa0841320:CDS
AGAGGGTGGTCTCTTATTAA+TGG 0.264546 5_4:+17448982 Msa0841320:CDS
ATTATAGCTTCAGGTGCTTC+TGG 0.293148 5_4:+17449436 Msa0841320:CDS
CAGATGGATGCACTTTCTAA+TGG 0.294055 5_4:+17450831 Msa0841320:intron
CATAGTTACTAAATATTTGA+TGG 0.294552 5_4:-17450202 None:intergenic
GAGAGGTAAAGAAGAGATAA+TGG 0.313794 5_4:+17446466 Msa0841320:CDS
ACTAACAACAATTGCTTTGT+TGG 0.313986 5_4:+17451419 Msa0841320:CDS
GGAACTTGCAGCTTCTTCTA+TGG 0.317436 5_4:+17449027 Msa0841320:CDS
CACCACAAGTAGTCATATTA+AGG 0.322583 5_4:-17450477 None:intergenic
CAGTTTCAGAACCTTCTTCA+TGG 0.328797 5_4:+17445919 Msa0841320:five_prime_UTR
ACTGAAACTAAGCCATGATT+TGG 0.329620 5_4:+17446976 Msa0841320:CDS
TTCGGAACGGCGAGAATGAT+AGG 0.337517 5_4:+17449092 Msa0841320:CDS
ATCAAGCTCTTTCGTGCTTC+CGG 0.350448 5_4:-17450421 None:intergenic
GCTTGATGAAATTAGCAAAT+AGG 0.352169 5_4:+17450437 Msa0841320:CDS
TTAGTTAAGGTGGTGTGGTT+CGG 0.354809 5_4:+17452035 Msa0841320:three_prime_UTR
TAGTTAAGGTGGTGTGGTTC+GGG 0.359497 5_4:+17452036 Msa0841320:three_prime_UTR
CATGAAGAAGGTTCTGAAAC+TGG 0.361754 5_4:-17445918 None:intergenic
TTGTGGTGGGCCATGTATAA+TGG 0.362098 5_4:+17447818 Msa0841320:CDS
CTCAGGTTGTCTTCTTATCA+TGG 0.367340 5_4:+17451277 Msa0841320:CDS
GGTAGTTGGCTAGAGTAGTA+AGG 0.379707 5_4:+17451732 Msa0841320:three_prime_UTR
ACAATTCATATTCTAATAGT+TGG 0.379943 5_4:-17451708 None:intergenic
AGAAAACCAAAGGTATTATC+TGG 0.382461 5_4:-17451967 None:intergenic
ATACATGGCCCACCACAATT+AGG 0.390584 5_4:-17447813 None:intergenic
TCAGTCTTTGTTTATCATCT+GGG 0.391749 5_4:-17446958 None:intergenic
AGATGGATGCACTTTCTAAT+GGG 0.399022 5_4:+17450832 Msa0841320:intron
ACTGTTCAAATTATAGCTTC+AGG 0.399428 5_4:+17449427 Msa0841320:CDS
ACTATTAGAATATGAATTGT+AGG 0.406017 5_4:+17451711 Msa0841320:three_prime_UTR
AAGACTTTGGTGTGAGGATA+AGG 0.406165 5_4:-17450622 None:intergenic
TGAATGAACCGCTTTGGATT+CGG 0.406307 5_4:+17449074 Msa0841320:CDS
GACAAGAATTGTGAAAGTTT+TGG 0.406893 5_4:-17449975 None:intergenic
GACAAGGTGTGCACACTACT+TGG 0.407874 5_4:-17451474 None:intergenic
ATAATGGATCAAAGTGGTTC+AGG 0.408529 5_4:+17446482 Msa0841320:CDS
TATACCCTTGAATAGCCATT+TGG 0.417968 5_4:-17450042 None:intergenic
GAACAAGTTGAAGATAAATC+AGG 0.419604 5_4:+17446509 Msa0841320:CDS
AACCTTCTTCATGGTCCTGC+TGG 0.422157 5_4:+17445928 Msa0841320:five_prime_UTR
AATTATATGCAGTTTGTTCA+AGG 0.423365 5_4:+17446925 Msa0841320:intron
TGAAGTTGAAGTTAGAGTTA+TGG 0.424415 5_4:-17446308 None:intergenic
ATCTCTTATGCCACCATCAC+TGG 0.427634 5_4:+17448859 Msa0841320:CDS
TATTGCTAACGGTTCACATC+CGG 0.428988 5_4:+17450878 Msa0841320:CDS
GTGATTCTAACAGTGTCTTC+TGG 0.429236 5_4:-17450529 None:intergenic
GAATATGAATTGTAGGTAGT+TGG 0.429602 5_4:+17451718 Msa0841320:three_prime_UTR
TCTTGAAAATGTGAAGGTTC+AGG 0.429683 5_4:-17448962 None:intergenic
CTCTTTCGTGCTTCCGGAGA+AGG 0.432585 5_4:-17450415 None:intergenic
TTTGAACAGAAAGAAGAAGA+AGG 0.433841 5_4:+17446437 Msa0841320:intron
CACTACGGTCGACGTTGATT+CGG 0.435097 5_4:+17451100 Msa0841320:CDS
TTACTAAATATTTGATGGAC+TGG 0.435592 5_4:-17450197 None:intergenic
TTTGGTGCACAACGTTGGTT+AGG 0.436385 5_4:+17450242 Msa0841320:CDS
TAAGTATGTGGGCTGTGTAT+TGG 0.437088 5_4:+17451811 Msa0841320:three_prime_UTR
GAGGACCTCCTGCAGTATTT+GGG 0.437354 5_4:-17449997 None:intergenic
AGCGCACCAGATAATACCTT+TGG 0.438255 5_4:+17451961 Msa0841320:three_prime_UTR
AGAAGGGAAATGCAGTTTCC+CGG 0.438847 5_4:-17450897 None:intergenic
AACTTACATTTATGCGAAGA+AGG 0.441914 5_4:-17450914 None:intergenic
TGATCATCAAAGCCCATATC+AGG 0.443548 5_4:-17447843 None:intergenic
TGCTCGTCAGATCCAAGAAA+TGG 0.444102 5_4:+17446595 Msa0841320:CDS
GATTGCAGTGATACCTTCTC+CGG 0.445102 5_4:+17450402 Msa0841320:intron
TTTAGTAACTATGTGTATAG+TGG 0.445206 5_4:+17450212 Msa0841320:CDS
GTCAAATGAATGAACCGCTT+TGG 0.446056 5_4:+17449068 Msa0841320:CDS
CTTGCCCTAGCAACAATAGT+TGG 0.448200 5_4:-17449403 None:intergenic
GAAGAAGGAAAAGGTTGAAA+AGG 0.449348 5_4:-17446342 None:intergenic
GTTTGAAGAATGAGAACTAT+AGG 0.449425 5_4:+17447760 Msa0841320:CDS
TTAAGCAAAGGAATGAGTTA+AGG 0.450292 5_4:+17449167 Msa0841320:CDS
GCTAGAAACATATCAGATCT+TGG 0.453635 5_4:+17450305 Msa0841320:CDS
ATTTCGGTGCATGGTGGCAT+TGG 0.453644 5_4:-17448917 None:intergenic
ATGATGGTGGTGCCATTGTT+TGG 0.453959 5_4:-17448838 None:intergenic
ACAATCATGGACTGCTATAT+CGG 0.455597 5_4:+17450501 Msa0841320:CDS
ATTCCAAGTTCTTTCTCCAT+TGG 0.455604 5_4:+17449858 Msa0841320:CDS
CATAGGGACAGGAATCATTT+CGG 0.459457 5_4:-17448933 None:intergenic
CCGAAGAAAATGAGTCTCTC+TGG 0.461082 5_4:-17449887 None:intergenic
ATCACTCCACTAGGCTGGCC+AGG 0.462734 5_4:-17450571 None:intergenic
TTCCTTTGCTTAAGATTCAA+AGG 0.462942 5_4:-17449157 None:intergenic
TGTGGTGGGCCATGTATAAT+GGG 0.465808 5_4:+17447819 Msa0841320:CDS
CTGAAACTAAGCCATGATTT+GGG 0.466763 5_4:+17446977 Msa0841320:CDS
GAGTGGGGAATTTAAGTATG+TGG 0.467721 5_4:+17451799 Msa0841320:three_prime_UTR
GTTTCCAACTATTGTTGCTA+GGG 0.472521 5_4:+17449399 Msa0841320:CDS
TGTTTCCAACTATTGTTGCT+AGG 0.475872 5_4:+17449398 Msa0841320:CDS
AATACCCTGCATCAAATTGA+AGG 0.477806 5_4:+17451380 Msa0841320:CDS
AACCACGCCAGGTTAAGTTC+TGG 0.478239 5_4:+17447005 Msa0841320:CDS
GTGGTTTCAGTCCCAAATCA+TGG 0.480470 5_4:-17446988 None:intergenic
AAATACTGCAGGAGGTCCTC+TGG 0.481145 5_4:+17450000 Msa0841320:CDS
GACAGTGTGATGAAATGAAA+GGG 0.486482 5_4:-17445823 None:intergenic
TAGTAATTAACATTGTGAAA+TGG 0.486893 5_4:+17451895 Msa0841320:three_prime_UTR
AATGGCCCAGGTTCCTTCCT+CGG 0.487016 5_4:-17449926 None:intergenic
GAGCACCTTCAATTTGATGC+AGG 0.487171 5_4:-17451385 None:intergenic
AATTATGTATGCAGGTAACA+TGG 0.487587 5_4:+17450147 Msa0841320:intron
ATGGCCTCACTAGTTAGTTA+AGG 0.487743 5_4:+17452022 Msa0841320:three_prime_UTR
TGTATAATGGGACCTGATAT+GGG 0.487914 5_4:+17447831 Msa0841320:CDS
CATCACACTGTCTCTTTGTG+TGG 0.489404 5_4:+17445834 Msa0841320:five_prime_UTR
GTAGTTGGCTAGAGTAGTAA+GGG 0.492885 5_4:+17451733 Msa0841320:three_prime_UTR
ACATGCCAAATGGCTATTCA+AGG 0.495938 5_4:+17450037 Msa0841320:CDS
AGATGAGAAATCACTTGCTA+TGG 0.496183 5_4:+17449006 Msa0841320:CDS
GAAAATAATTAAATTAGCAA+TGG 0.496335 5_4:-17451686 None:intergenic
CTTTGTTTATCATCTGGGTG+TGG 0.497200 5_4:-17446953 None:intergenic
ATACCAATGGAGAAAGAACT+TGG 0.497986 5_4:-17449861 None:intergenic
CTACTTGTGGTGGACAATCA+TGG 0.498351 5_4:+17450488 Msa0841320:CDS
GAGAGTTGCACAGATCAATC+TGG 0.499321 5_4:+17451062 Msa0841320:CDS
CAAGAATCACTCCACTAGGC+TGG 0.502236 5_4:-17450576 None:intergenic
TTGGAAGGTGCACTAGTGGT+TGG 0.505086 5_4:-17451455 None:intergenic
GATGTATGTGAGGAGGGTAG+AGG 0.505862 5_4:+17451922 Msa0841320:three_prime_UTR
TTGCCGCAGTTTCAACCACT+TGG 0.506037 5_4:+17450596 Msa0841320:CDS
GTGTATAGTGGAATGGCATT+TGG 0.507399 5_4:+17450224 Msa0841320:CDS
AAGGAACAATTTCAATGACT+TGG 0.511164 5_4:-17451496 None:intergenic
TGGTGCGCTCTTGACTCCCT+CGG 0.512377 5_4:-17451947 None:intergenic
TCTCGTATGATTCGTGATGA+TGG 0.519461 5_4:+17452003 Msa0841320:three_prime_UTR
GGTGCTTCTGGCCATGCAAG+TGG 0.520606 5_4:+17449448 Msa0841320:CDS
ATTGCTAACGGTTCACATCC+GGG 0.521364 5_4:+17450879 Msa0841320:CDS
TGTCAAGTAATGTCAACAAT+GGG 0.522321 5_4:+17446240 Msa0841320:CDS
GAAGGTTCAGGTGGTAACAT+AGG 0.523574 5_4:-17448950 None:intergenic
GAGTAGTAAGGGAAGGAACA+AGG 0.525112 5_4:+17451744 Msa0841320:three_prime_UTR
AGTGGGGAATTTAAGTATGT+GGG 0.525846 5_4:+17451800 Msa0841320:three_prime_UTR
TGACGAACGCCACAGATCTC+AGG 0.526206 5_4:+17450657 Msa0841320:CDS
ACAACCTGAGTTAGCAGCAT+TGG 0.530947 5_4:-17451264 None:intergenic
TGCAAGTGGGACTCTTCAGC+TGG 0.531576 5_4:+17449462 Msa0841320:CDS
TCAGGTTGTCTTCTTATCAT+GGG 0.533492 5_4:+17451278 Msa0841320:CDS
CTTGTCCACTCATAGCTAGT+TGG 0.533968 5_4:-17451124 None:intergenic
TGAGGAGGGTAGAGGGACCG+AGG 0.534032 5_4:+17451930 Msa0841320:three_prime_UTR
ACTAGGAAAATCACTGAGCC+TGG 0.535391 5_4:+17450553 Msa0841320:CDS
AAAATGCCGAGGAAGGAACC+TGG 0.537052 5_4:+17449920 Msa0841320:CDS
ACAGGAATCATTTCGGTGCA+TGG 0.539238 5_4:-17448926 None:intergenic
AGGAAAATCAACAATGGCCC+AGG 0.539512 5_4:-17449938 None:intergenic
GGCATTGGATCAAAGTGCCT+TGG 0.540308 5_4:-17448902 None:intergenic
GGCCTTTGAATCTTAAGCAA+AGG 0.541375 5_4:+17449155 Msa0841320:CDS
TCAGGTGGTAACATAGGGAC+AGG 0.544013 5_4:-17448944 None:intergenic
GTCATTCAAGACATGCCAAA+TGG 0.544579 5_4:+17450027 Msa0841320:CDS
TCGGAACGGCGAGAATGATA+GGG 0.544642 5_4:+17449093 Msa0841320:CDS
TGAGAACTATAGGCTACAAT+CGG 0.544698 5_4:+17447770 Msa0841320:CDS
TCATCTGAACAAGGTGTCAC+AGG 0.545128 5_4:+17451218 Msa0841320:CDS
AACTTCGATTTGAAAATGCC+CGG 0.545308 5_4:+17447868 Msa0841320:CDS
ACTTACATTTATGCGAAGAA+GGG 0.551867 5_4:-17450913 None:intergenic
TGGGAACTCATTAAATGAAG+TGG 0.552199 5_4:+17450851 Msa0841320:CDS
AAGGTTCAGGTGGTAACATA+GGG 0.552742 5_4:-17448949 None:intergenic
TTTGGGACTGAAACCACGCC+AGG 0.553427 5_4:+17446994 Msa0841320:CDS
GGTATTGATGTATGTGAGGA+GGG 0.553569 5_4:+17451916 Msa0841320:three_prime_UTR
TAACTATGTGTATAGTGGAA+TGG 0.553607 5_4:+17450217 Msa0841320:CDS
ATTACCATGGAAGAAGGAAA+AGG 0.555298 5_4:-17446351 None:intergenic
GAAGAAGAAGGAATATTGAG+AGG 0.555846 5_4:+17446449 Msa0841320:CDS
TTGAAGTTAGAGTTATGGAT+CGG 0.556544 5_4:-17446303 None:intergenic
TTTGCAGAGGCAATGTGAAA+GGG 0.557444 5_4:+17450268 Msa0841320:CDS
ACTAGTTAGTTAAGGTGGTG+TGG 0.559797 5_4:+17452030 Msa0841320:three_prime_UTR
TACCAGCAGGACCATGAAGA+AGG 0.560522 5_4:-17445930 None:intergenic
ACGGAGGAGATCAAAGACTT+TGG 0.560572 5_4:-17450635 None:intergenic
AGCACCTTCAATTTGATGCA+GGG 0.561062 5_4:-17451384 None:intergenic
TCAGCATTTGATGAAACCAT+TGG 0.561093 5_4:-17451191 None:intergenic
TGCATTGCACTTCTTCCACA+AGG 0.562490 5_4:+17451155 Msa0841320:CDS
GATGCAGGGTATTGCAGAGG+TGG 0.564128 5_4:-17451370 None:intergenic
AGGGTTCATGATAGTGCCAA+TGG 0.566530 5_4:+17451175 Msa0841320:CDS
TCATAATCCAAAAGGGAGGA+AGG 0.566941 5_4:-17451515 None:intergenic
GTGCTTCTGGCCATGCAAGT+GGG 0.568255 5_4:+17449449 Msa0841320:CDS
AGACAGTGTGATGAAATGAA+AGG 0.570581 5_4:-17445824 None:intergenic
AGCCTTAATATGACTACTTG+TGG 0.570635 5_4:+17450475 Msa0841320:CDS
GAAAGGTTAAGCTTTGCAGA+AGG 0.572294 5_4:-17451326 None:intergenic
CAAGTAATGTCAACAATGGG+AGG 0.574313 5_4:+17446243 Msa0841320:CDS
AGTGCCAATGCTGCTAACTC+AGG 0.574318 5_4:+17451260 Msa0841320:CDS
ATTCTTGTCCCAAATACTGC+AGG 0.578963 5_4:+17449989 Msa0841320:CDS
AACCAGAACTTAACCTGGCG+TGG 0.579376 5_4:-17447007 None:intergenic
GTCTCTCTGGTGGATACCAA+TGG 0.579467 5_4:-17449874 None:intergenic
GCCTCACTAGTTAGTTAAGG+TGG 0.580091 5_4:+17452025 Msa0841320:three_prime_UTR
GAGATCTGTGGCGTTCGTCA+CGG 0.582192 5_4:-17450654 None:intergenic
GAAGTGGCTCATATTGCTAA+CGG 0.583975 5_4:+17450867 Msa0841320:CDS
GAGGAGGGTAGAGGGACCGA+GGG 0.584418 5_4:+17451931 Msa0841320:three_prime_UTR
GCTGAAGAGTCCCACTTGCA+TGG 0.585312 5_4:-17449459 None:intergenic
GAATCGTCGAACTCAGATGA+AGG 0.585722 5_4:+17447033 Msa0841320:CDS
TTGTCAAGTAATGTCAACAA+TGG 0.587069 5_4:+17446239 Msa0841320:CDS
ATGTATGTGAGGAGGGTAGA+GGG 0.588397 5_4:+17451923 Msa0841320:three_prime_UTR
ATATCAGGTCCCATTATACA+TGG 0.589693 5_4:-17447828 None:intergenic
GGTGGTGCCATTGTTTGGAG+TGG 0.590059 5_4:-17448833 None:intergenic
TTGGCTAGAGTAGTAAGGGA+AGG 0.591274 5_4:+17451737 Msa0841320:three_prime_UTR
TGTCAGCAAAATGCCGAGGA+AGG 0.592338 5_4:+17449913 Msa0841320:CDS
TGAAAGGGTTGCAAGCCTCA+TGG 0.593187 5_4:+17450283 Msa0841320:CDS
CTACTTGGAAGGTGCACTAG+TGG 0.594559 5_4:-17451459 None:intergenic
ATTATGTATGCAGGTAACAT+GGG 0.594985 5_4:+17450148 Msa0841320:intron
TAGACATGAACATTTATCCA+AGG 0.595721 5_4:+17448885 Msa0841320:CDS
AGTAGTAAGGGAAGGAACAA+GGG 0.595894 5_4:+17451745 Msa0841320:three_prime_UTR
AAATGCCGAGGAAGGAACCT+GGG 0.596467 5_4:+17449921 Msa0841320:CDS
AGGAAAAGGTTGAAAAGGCA+TGG 0.599322 5_4:-17446337 None:intergenic
AGGTGTGCACACTACTTGGA+AGG 0.599412 5_4:-17451470 None:intergenic
ATGTCTAAGTCCAGTGATGG+TGG 0.600221 5_4:-17448869 None:intergenic
AAATGCCCGGTTAAAAGAAG+AGG 0.603680 5_4:+17447881 Msa0841320:CDS
GATGGTGGCATAAGAGATGA+TGG 0.607106 5_4:-17448854 None:intergenic
ACTGAGCCTGGCCAGCCTAG+TGG 0.609062 5_4:+17450565 Msa0841320:CDS
TGGTATTGATGTATGTGAGG+AGG 0.609582 5_4:+17451915 Msa0841320:three_prime_UTR
TTGGCACTAGTAGTAGATGA+TGG 0.610277 5_4:-17451245 None:intergenic
GGAAGAAGTGCAATGCATGA+AGG 0.611914 5_4:-17451149 None:intergenic
TGATTGCTGTGACACTTGAA+AGG 0.612049 5_4:-17451343 None:intergenic
CAATTTCAATGACTTGGACA+AGG 0.612191 5_4:-17451490 None:intergenic
CATGCCAAATGGCTATTCAA+GGG 0.614079 5_4:+17450038 Msa0841320:CDS
AAGTAATGTCAACAATGGGA+GGG 0.615730 5_4:+17446244 Msa0841320:CDS
GAAGAAGTGCAATGCATGAA+GGG 0.616666 5_4:-17451148 None:intergenic
TGGCATTTGGTGCACAACGT+TGG 0.617325 5_4:+17450237 Msa0841320:CDS
GGCACTATCATGAACCCTTG+TGG 0.620159 5_4:-17451170 None:intergenic
AAGAAAATGAGTCTCTCTGG+TGG 0.626409 5_4:-17449884 None:intergenic
GCGGCAAGAATCACTCCACT+AGG 0.626852 5_4:-17450580 None:intergenic
CGACCTTACTAGAAAACCAA+AGG 0.628582 5_4:-17451977 None:intergenic
AAGCCAAGTGGTTGAAACTG+CGG 0.629518 5_4:-17450599 None:intergenic
TCTGAAACCAGAACTTAACC+TGG 0.629926 5_4:-17447012 None:intergenic
TGAAAATGTGAAGGTTCAGG+TGG 0.630308 5_4:-17448959 None:intergenic
TGGTCGTCCACTCCAAACAA+TGG 0.632170 5_4:+17448826 Msa0841320:CDS
CTTGTCCCAAATACTGCAGG+AGG 0.633782 5_4:+17449992 Msa0841320:CDS
TATGGTTAGAGAAATTCGTA+CGG 0.634476 5_4:+17451547 Msa0841320:three_prime_UTR
CCACCCTCTTGAAAATGTGA+AGG 0.635356 5_4:-17448968 None:intergenic
CTTAATATGACTACTTGTGG+TGG 0.638825 5_4:+17450478 Msa0841320:CDS
GAACCGCTTTGGATTCGGAA+CGG 0.639395 5_4:+17449079 Msa0841320:CDS
CTGATATGTTTCTAGCCATG+AGG 0.641439 5_4:-17450298 None:intergenic
AGAAACATATCAGATCTTGG+AGG 0.641979 5_4:+17450308 Msa0841320:CDS
TTTGATGCAGGGTATTGCAG+AGG 0.646249 5_4:-17451373 None:intergenic
TCGGTCCAACTAGCTATGAG+TGG 0.646383 5_4:+17451119 Msa0841320:CDS
TGCATAACATCAAGATACAC+TGG 0.647161 5_4:+17448806 Msa0841320:CDS
AAATGGTATTGATGTATGTG+AGG 0.652933 5_4:+17451912 Msa0841320:three_prime_UTR
AGATCAAAGACTTTGGTGTG+AGG 0.652997 5_4:-17450628 None:intergenic
GCATTGCACTTCTTCCACAA+GGG 0.658072 5_4:+17451156 Msa0841320:CDS
CGGAAAAGTTGAATTAGCAA+CGG 0.658623 5_4:+17451567 Msa0841320:three_prime_UTR
ACACTGTTAGAATCACAACT+AGG 0.660637 5_4:+17450536 Msa0841320:CDS
ATCAACAGGAAAATCAACAA+TGG 0.660991 5_4:-17449944 None:intergenic
GAAGAGATAATGGATCAAAG+TGG 0.668091 5_4:+17446476 Msa0841320:CDS
GCTGATACATCATCTGAACA+AGG 0.673597 5_4:+17451209 Msa0841320:CDS
ATCTGTGGCGTTCGTCACGG+AGG 0.674761 5_4:-17450651 None:intergenic
TTCATGTCTAAGTCCAGTGA+TGG 0.677862 5_4:-17448872 None:intergenic
ACAGTGTGATGAAATGAAAG+GGG 0.689420 5_4:-17445822 None:intergenic
ACCACCTTAACTAACTAGTG+AGG 0.694802 5_4:-17452026 None:intergenic
AAATTCATAATCCAAAAGGG+AGG 0.696123 5_4:-17451519 None:intergenic
TCGCCGTTCCGAATCCAAAG+CGG 0.699251 5_4:-17449082 None:intergenic
GGAATCATTTCGGTGCATGG+TGG 0.702254 5_4:-17448923 None:intergenic
GTATTGTCAGCAAAATGCCG+AGG 0.721851 5_4:+17449909 Msa0841320:CDS
AAGCTTAGTAGTCTACACTA+CGG 0.725334 5_4:+17451085 Msa0841320:CDS
GTCTTGAATGACACAACCAG+AGG 0.731806 5_4:-17450016 None:intergenic
AGAATGGTACCTGAGATCTG+TGG 0.756914 5_4:-17450666 None:intergenic
GGTGGCATAAGAGATGATGG+TGG 0.803191 5_4:-17448851 None:intergenic
GTGAGGATAAGGAAGCCAAG+TGG 0.809887 5_4:-17450611 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAAAAAAATAGTTT+AGG - chr5_4:17445968-17445987 None:intergenic 10.0%
!!! TAATTTTTCATATAATATGA+TGG - chr5_4:17446744-17446763 None:intergenic 10.0%
!!! TTTTAATTGTTTACTAATTT+TGG + chr5_4:17447661-17447680 Msa0841320:intron 10.0%
!!! TTTAATTGTTTACTAATTTT+GGG + chr5_4:17447662-17447681 Msa0841320:intron 10.0%
!!! ATTTTAATTAAAAATCATGT+TGG + chr5_4:17447962-17447981 Msa0841320:intron 10.0%
!! AAAATGTATAAAATAATAAG+TGG + chr5_4:17448232-17448251 Msa0841320:intron 10.0%
!! AATAAAAATTATACAAAATG+AGG + chr5_4:17448316-17448335 Msa0841320:intron 10.0%
!!! AGAAAAATATTTTATAGAAT+CGG + chr5_4:17450342-17450361 Msa0841320:intron 10.0%
!!! TTATATTTGACATTTTATTT+TGG + chr5_4:17450380-17450399 Msa0841320:intron 10.0%
!! TAAAATAAAATCAAGAATTT+AGG - chr5_4:17450806-17450825 None:intergenic 10.0%
!!! ATTTTATTTTATTTTACAGA+TGG + chr5_4:17450815-17450834 Msa0841320:intron 10.0%
!!! ATTTTTTTTTCTTTTCACTT+TGG + chr5_4:17445973-17445992 Msa0841320:intron 15.0%
!!! AGAATGTTTTTTTTATTGTT+AGG + chr5_4:17446088-17446107 Msa0841320:intron 15.0%
!! AAATAGTAAAAATATTACCA+TGG - chr5_4:17446367-17446386 None:intergenic 15.0%
!!! TAAACCCTAAATATATTTTA+AGG + chr5_4:17446864-17446883 Msa0841320:intron 15.0%
!!! TTAGCCTTAAAATATATTTA+GGG - chr5_4:17446871-17446890 None:intergenic 15.0%
!!! TTTAGCCTTAAAATATATTT+AGG - chr5_4:17446872-17446891 None:intergenic 15.0%
!! TCATTTCATATAGTTAATAA+TGG + chr5_4:17447358-17447377 Msa0841320:intron 15.0%
!! ATATAGTTAATAATGGTTAT+TGG + chr5_4:17447365-17447384 Msa0841320:intron 15.0%
!! TCAAAACCATTAAAAAAAAT+TGG + chr5_4:17447529-17447548 Msa0841320:intron 15.0%
!! CAAAACCATTAAAAAAAATT+GGG + chr5_4:17447530-17447549 Msa0841320:intron 15.0%
!! AAAACCATTAAAAAAAATTG+GGG + chr5_4:17447531-17447550 Msa0841320:intron 15.0%
!!! TTCTAAGAATAAATACTTAA+TGG - chr5_4:17447565-17447584 None:intergenic 15.0%
!!! ATTGTTGTTGTTATTATTAT+AGG + chr5_4:17447689-17447708 Msa0841320:intron 15.0%
!! AAAAAATAGTATATGTTAAG+TGG + chr5_4:17448126-17448145 Msa0841320:intron 15.0%
!!! TCAATTGTATATTTTTAACA+AGG + chr5_4:17448177-17448196 Msa0841320:intron 15.0%
!! AAAAAATGCATGATTTAATT+TGG + chr5_4:17448748-17448767 Msa0841320:intron 15.0%
!! ACAATGTAATAAAAATATCT+AGG - chr5_4:17450076-17450095 None:intergenic 15.0%
!!! TAATTTTTAATTATGTATGC+AGG + chr5_4:17450139-17450158 Msa0841320:intron 15.0%
!!! GAAAAATATTTTATAGAATC+GGG + chr5_4:17450343-17450362 Msa0841320:intron 15.0%
!! TAAAAATTCATAATCCAAAA+GGG - chr5_4:17451525-17451544 None:intergenic 15.0%
!! GAAAATAATTAAATTAGCAA+TGG - chr5_4:17451689-17451708 None:intergenic 15.0%
!!! TATTTTTTGATGTTAACATC+AGG + chr5_4:17446131-17446150 Msa0841320:intron 20.0%
!!! ATAATCAAGGTTTTAAATTG+CGG + chr5_4:17446701-17446720 Msa0841320:intron 20.0%
!! AAAAATTATGACCTAACATA+TGG + chr5_4:17446756-17446775 Msa0841320:intron 20.0%
!! TATTATTGTTTAGTACTCTA+CGG + chr5_4:17447593-17447612 Msa0841320:intron 20.0%
!!! AATATTTTATGTCCTAATTG+TGG + chr5_4:17447801-17447820 Msa0841320:CDS 20.0%
!! TTAAAGTGAAGAATTTACAT+AGG - chr5_4:17448039-17448058 None:intergenic 20.0%
!!! AATTCTTCACTTTAAGAATA+TGG + chr5_4:17448044-17448063 Msa0841320:intron 20.0%
!!! AAGTCATATTTTTTGACAAT+AGG + chr5_4:17448265-17448284 Msa0841320:intron 20.0%
!! ACAAACTAATAATTCCTAAA+AGG - chr5_4:17448365-17448384 None:intergenic 20.0%
!!! TCACTTTTTTTAACTGTTTT+TGG + chr5_4:17448446-17448465 Msa0841320:intron 20.0%
!! ACAAATTCATTTATTCTTTG+TGG + chr5_4:17448542-17448561 Msa0841320:intron 20.0%
!! TTCTTATACTATTAGAGATT+AGG - chr5_4:17448729-17448748 None:intergenic 20.0%
!!! TTTTTGCTATAAAACATACA+AGG - chr5_4:17449368-17449387 None:intergenic 20.0%
!!! TGTATGTTTTATAGCAAAAA+TGG + chr5_4:17449368-17449387 Msa0841320:intron 20.0%
!! GAATTATCATTGTTATACAT+AGG - chr5_4:17449597-17449616 None:intergenic 20.0%
!! AACAATGATAATTCAGATTA+AGG + chr5_4:17449603-17449622 Msa0841320:intron 20.0%
!! GAATTATTCTTCAAAACATT+AGG + chr5_4:17450105-17450124 Msa0841320:intron 20.0%
!! CATAGTTACTAAATATTTGA+TGG - chr5_4:17450205-17450224 None:intergenic 20.0%
!! CTAAAAATTCATAATCCAAA+AGG - chr5_4:17451526-17451545 None:intergenic 20.0%
!!! GGATTATGAATTTTTAGTTA+TGG + chr5_4:17451529-17451548 Msa0841320:three_prime_UTR 20.0%
!! ACAATTCATATTCTAATAGT+TGG - chr5_4:17451711-17451730 None:intergenic 20.0%
!! ACTATTAGAATATGAATTGT+AGG + chr5_4:17451711-17451730 Msa0841320:three_prime_UTR 20.0%
!!! GAGTGTTTTTAAATAAAAGT+TGG + chr5_4:17451771-17451790 Msa0841320:three_prime_UTR 20.0%
!! TAGTAATTAACATTGTGAAA+TGG + chr5_4:17451895-17451914 Msa0841320:three_prime_UTR 20.0%
! AAAAATATTACCATGGAAGA+AGG - chr5_4:17446360-17446379 None:intergenic 25.0%
! AATTCATACAGTGATAATCA+AGG + chr5_4:17446688-17446707 Msa0841320:intron 25.0%
!! AATTATATGCAGTTTGTTCA+AGG + chr5_4:17446925-17446944 Msa0841320:intron 25.0%
! AAGAAGAATAAACGTCTTAA+TGG - chr5_4:17447108-17447127 None:intergenic 25.0%
! AACAAACATCTATTACTACT+TGG + chr5_4:17447306-17447325 Msa0841320:intron 25.0%
! TGCTATATATCATCATTACT+AGG + chr5_4:17447479-17447498 Msa0841320:intron 25.0%
! GCTATATATCATCATTACTA+GGG + chr5_4:17447480-17447499 Msa0841320:intron 25.0%
!!! AGTACCCCAATTTTTTTTAA+TGG - chr5_4:17447538-17447557 None:intergenic 25.0%
!! TAAATACCTCTTCTTTTAAC+CGG - chr5_4:17447890-17447909 None:intergenic 25.0%
! AATTATACAAAATGAGGCTA+AGG + chr5_4:17448322-17448341 Msa0841320:intron 25.0%
! TAGTGACAGTTTATTATTGA+AGG + chr5_4:17448609-17448628 Msa0841320:intron 25.0%
! AGTGACAGTTTATTATTGAA+GGG + chr5_4:17448610-17448629 Msa0841320:intron 25.0%
!! TCAAATAAATTGATTAGCCA+CGG + chr5_4:17448688-17448707 Msa0841320:intron 25.0%
!! TGTTTTATAGCAAAAATGGA+TGG + chr5_4:17449372-17449391 Msa0841320:intron 25.0%
! CATTGACACACATTATATAT+TGG + chr5_4:17449672-17449691 Msa0841320:intron 25.0%
! TGATATAAAACACATCACAA+AGG - chr5_4:17449754-17449773 None:intergenic 25.0%
!! TTACTAAATATTTGATGGAC+TGG - chr5_4:17450200-17450219 None:intergenic 25.0%
! TTTAGTAACTATGTGTATAG+TGG + chr5_4:17450212-17450231 Msa0841320:CDS 25.0%
!! AATAAAAGTTGGATTTTGAG+TGG + chr5_4:17451782-17451801 Msa0841320:three_prime_UTR 25.0%
!!! ATAAAAGTTGGATTTTGAGT+GGG + chr5_4:17451783-17451802 Msa0841320:three_prime_UTR 25.0%
!!! GGTTTTGAAAATGAAGTGAA+AGG - chr5_4:17445900-17445919 None:intergenic 30.0%
TATTGTTAGGATTCTGATAC+AGG + chr5_4:17446101-17446120 Msa0841320:intron 30.0%
TTTGATGTTAACATCAGGTT+TGG + chr5_4:17446136-17446155 Msa0841320:intron 30.0%
AAAGCACAGTAAAAAACAGT+GGG + chr5_4:17446195-17446214 Msa0841320:five_prime_UTR 30.0%
TTGTCAAGTAATGTCAACAA+TGG + chr5_4:17446239-17446258 Msa0841320:CDS 30.0%
TGTCAAGTAATGTCAACAAT+GGG + chr5_4:17446240-17446259 Msa0841320:CDS 30.0%
TTGAAGTTAGAGTTATGGAT+CGG - chr5_4:17446306-17446325 None:intergenic 30.0%
TGAAGTTGAAGTTAGAGTTA+TGG - chr5_4:17446311-17446330 None:intergenic 30.0%
TTTGAACAGAAAGAAGAAGA+AGG + chr5_4:17446437-17446456 Msa0841320:intron 30.0%
! GAACAAGTTGAAGATAAATC+AGG + chr5_4:17446509-17446528 Msa0841320:CDS 30.0%
TATTATACGCTTCCATTTCT+TGG - chr5_4:17446610-17446629 None:intergenic 30.0%
! TCAGTCTTTGTTTATCATCT+GGG - chr5_4:17446961-17446980 None:intergenic 30.0%
! TTCAGTCTTTGTTTATCATC+TGG - chr5_4:17446962-17446981 None:intergenic 30.0%
!!! AGAAAACGCGTTTTTTCATT+GGG - chr5_4:17447252-17447271 None:intergenic 30.0%
!!! AAGAAAACGCGTTTTTTCAT+TGG - chr5_4:17447253-17447272 None:intergenic 30.0%
! TGAAAAAACGCGTTTTCTTT+TGG + chr5_4:17447254-17447273 Msa0841320:intron 30.0%
! GAAAAAACGCGTTTTCTTTT+GGG + chr5_4:17447255-17447274 Msa0841320:intron 30.0%
GGTTAAATGCGTTACATTAA+TGG - chr5_4:17447418-17447437 None:intergenic 30.0%
CAATAAATATGAGTAGCGTT+TGG - chr5_4:17447461-17447480 None:intergenic 30.0%
CTCTACGGTTGATTAATTAT+TGG + chr5_4:17447608-17447627 Msa0841320:intron 30.0%
GTTTGAAGAATGAGAACTAT+AGG + chr5_4:17447760-17447779 Msa0841320:CDS 30.0%
! ATTTTATGTCCTAATTGTGG+TGG + chr5_4:17447804-17447823 Msa0841320:CDS 30.0%
! TTTTATGTCCTAATTGTGGT+GGG + chr5_4:17447805-17447824 Msa0841320:CDS 30.0%
! AAATACCTCTTCTTTTAACC+GGG - chr5_4:17447889-17447908 None:intergenic 30.0%
! CTAAGGCAAAATCTAAAATG+AGG + chr5_4:17448339-17448358 Msa0841320:intron 30.0%
!! AATCTAAAATGAGGCCTTTT+AGG + chr5_4:17448348-17448367 Msa0841320:intron 30.0%
! CAAATAAATTGATTAGCCAC+GGG + chr5_4:17448689-17448708 Msa0841320:intron 30.0%
TACTATTAGAGATTAGGTCA+TGG - chr5_4:17448723-17448742 None:intergenic 30.0%
TAGACATGAACATTTATCCA+AGG + chr5_4:17448885-17448904 Msa0841320:CDS 30.0%
!! TTAATTTTGATGAGCATGCT+AGG + chr5_4:17449122-17449141 Msa0841320:CDS 30.0%
TTCCTTTGCTTAAGATTCAA+AGG - chr5_4:17449160-17449179 None:intergenic 30.0%
TTAAGCAAAGGAATGAGTTA+AGG + chr5_4:17449167-17449186 Msa0841320:CDS 30.0%
!!! ATGCTGTAAGTTTTGTTGTT+TGG + chr5_4:17449257-17449276 Msa0841320:intron 30.0%
ACTGTTCAAATTATAGCTTC+AGG + chr5_4:17449427-17449446 Msa0841320:CDS 30.0%
TGATAATTCAGATTAAGGAC+AGG + chr5_4:17449608-17449627 Msa0841320:intron 30.0%
AATGTGTGTCAATGTTATGT+CGG - chr5_4:17449666-17449685 None:intergenic 30.0%
ATCAACAGGAAAATCAACAA+TGG - chr5_4:17449947-17449966 None:intergenic 30.0%
!! AAGAATTGTGAAAGTTTTGG+TGG - chr5_4:17449975-17449994 None:intergenic 30.0%
! GACAAGAATTGTGAAAGTTT+TGG - chr5_4:17449978-17449997 None:intergenic 30.0%
AATTATGTATGCAGGTAACA+TGG + chr5_4:17450147-17450166 Msa0841320:intron 30.0%
ATTATGTATGCAGGTAACAT+GGG + chr5_4:17450148-17450167 Msa0841320:intron 30.0%
! TAACTATGTGTATAGTGGAA+TGG + chr5_4:17450217-17450236 Msa0841320:CDS 30.0%
GCTTGATGAAATTAGCAAAT+AGG + chr5_4:17450437-17450456 Msa0841320:CDS 30.0%
ACTTACATTTATGCGAAGAA+GGG - chr5_4:17450916-17450935 None:intergenic 30.0%
AACTTACATTTATGCGAAGA+AGG - chr5_4:17450917-17450936 None:intergenic 30.0%
ACTAACAACAATTGCTTTGT+TGG + chr5_4:17451419-17451438 Msa0841320:CDS 30.0%
AAGGAACAATTTCAATGACT+TGG - chr5_4:17451499-17451518 None:intergenic 30.0%
AAATTCATAATCCAAAAGGG+AGG - chr5_4:17451522-17451541 None:intergenic 30.0%
TATGGTTAGAGAAATTCGTA+CGG + chr5_4:17451547-17451566 Msa0841320:three_prime_UTR 30.0%
GAATATGAATTGTAGGTAGT+TGG + chr5_4:17451718-17451737 Msa0841320:three_prime_UTR 30.0%
!! TAAAAGTTGGATTTTGAGTG+GGG + chr5_4:17451784-17451803 Msa0841320:three_prime_UTR 30.0%
! TGATTGATGTGTGTTTTGTA+TGG + chr5_4:17451861-17451880 Msa0841320:three_prime_UTR 30.0%
! GATTGATGTGTGTTTTGTAT+GGG + chr5_4:17451862-17451881 Msa0841320:three_prime_UTR 30.0%
!! AAATGGTATTGATGTATGTG+AGG + chr5_4:17451912-17451931 Msa0841320:three_prime_UTR 30.0%
!! AGAAAACCAAAGGTATTATC+TGG - chr5_4:17451970-17451989 None:intergenic 30.0%
!!! ATACCTTTGGTTTTCTAGTA+AGG + chr5_4:17451974-17451993 Msa0841320:three_prime_UTR 30.0%
ACAGTGTGATGAAATGAAAG+GGG - chr5_4:17445825-17445844 None:intergenic 35.0%
GACAGTGTGATGAAATGAAA+GGG - chr5_4:17445826-17445845 None:intergenic 35.0%
AGACAGTGTGATGAAATGAA+AGG - chr5_4:17445827-17445846 None:intergenic 35.0%
GTGTAGAAGAATCTATTCAG+AGG - chr5_4:17446026-17446045 None:intergenic 35.0%
GTAAAACAAAGATTCCTGAG+AGG - chr5_4:17446048-17446067 None:intergenic 35.0%
! GAAAGCACAGTAAAAAACAG+TGG + chr5_4:17446194-17446213 Msa0841320:five_prime_UTR 35.0%
AAGCACAGTAAAAAACAGTG+GGG + chr5_4:17446196-17446215 Msa0841320:five_prime_UTR 35.0%
GTGGGGTTAAGAAAAATGTA+TGG + chr5_4:17446213-17446232 Msa0841320:exon 35.0%
AAGTAATGTCAACAATGGGA+GGG + chr5_4:17446244-17446263 Msa0841320:CDS 35.0%
GAAGAAGGAAAAGGTTGAAA+AGG - chr5_4:17446345-17446364 None:intergenic 35.0%
ATTACCATGGAAGAAGGAAA+AGG - chr5_4:17446354-17446373 None:intergenic 35.0%
GAAGAAGAAGGAATATTGAG+AGG + chr5_4:17446449-17446468 Msa0841320:CDS 35.0%
GAGAGGTAAAGAAGAGATAA+TGG + chr5_4:17446466-17446485 Msa0841320:CDS 35.0%
!! GAAGAGATAATGGATCAAAG+TGG + chr5_4:17446476-17446495 Msa0841320:CDS 35.0%
!! ATAATGGATCAAAGTGGTTC+AGG + chr5_4:17446482-17446501 Msa0841320:CDS 35.0%
! GGTTGACCTTGCTTTAAATA+TGG + chr5_4:17446777-17446796 Msa0841320:intron 35.0%
! ACGAGACCATATTTAAAGCA+AGG - chr5_4:17446786-17446805 None:intergenic 35.0%
ACTGAAACTAAGCCATGATT+TGG + chr5_4:17446976-17446995 Msa0841320:CDS 35.0%
CTGAAACTAAGCCATGATTT+GGG + chr5_4:17446977-17446996 Msa0841320:CDS 35.0%
TCTCACATTCATTTCGTCAA+AGG - chr5_4:17447150-17447169 None:intergenic 35.0%
AAACCCTAAACTGTTGTACA+AGG + chr5_4:17447181-17447200 Msa0841320:intron 35.0%
AGACCTTGTACAACAGTTTA+GGG - chr5_4:17447187-17447206 None:intergenic 35.0%
AAGACCTTGTACAACAGTTT+AGG - chr5_4:17447188-17447207 None:intergenic 35.0%
GGAATACAGACTGTATATGA+TGG - chr5_4:17447397-17447416 None:intergenic 35.0%
TACTAGGGTTACACTTCAAA+CGG + chr5_4:17447495-17447514 Msa0841320:intron 35.0%
TGAGAACTATAGGCTACAAT+CGG + chr5_4:17447770-17447789 Msa0841320:CDS 35.0%
ATATCAGGTCCCATTATACA+TGG - chr5_4:17447831-17447850 None:intergenic 35.0%
! ATGTATAATGGGACCTGATA+TGG + chr5_4:17447830-17447849 Msa0841320:CDS 35.0%
! TGTATAATGGGACCTGATAT+GGG + chr5_4:17447831-17447850 Msa0841320:CDS 35.0%
! AACTTCGATTTGAAAATGCC+CGG + chr5_4:17447868-17447887 Msa0841320:CDS 35.0%
TGCATAACATCAAGATACAC+TGG + chr5_4:17448806-17448825 Msa0841320:CDS 35.0%
TCTTGAAAATGTGAAGGTTC+AGG - chr5_4:17448965-17448984 None:intergenic 35.0%
!! TGAACCTTCACATTTTCAAG+AGG + chr5_4:17448964-17448983 Msa0841320:CDS 35.0%
!! GAACCTTCACATTTTCAAGA+GGG + chr5_4:17448965-17448984 Msa0841320:CDS 35.0%
! AGATGAGAAATCACTTGCTA+TGG + chr5_4:17449006-17449025 Msa0841320:CDS 35.0%
TGTTTCCAACTATTGTTGCT+AGG + chr5_4:17449398-17449417 Msa0841320:CDS 35.0%
GTTTCCAACTATTGTTGCTA+GGG + chr5_4:17449399-17449418 Msa0841320:CDS 35.0%
ATTCCAAGTTCTTTCTCCAT+TGG + chr5_4:17449858-17449877 Msa0841320:CDS 35.0%
ATACCAATGGAGAAAGAACT+TGG - chr5_4:17449864-17449883 None:intergenic 35.0%
TATACCCTTGAATAGCCATT+TGG - chr5_4:17450045-17450064 None:intergenic 35.0%
GCTAGAAACATATCAGATCT+TGG + chr5_4:17450305-17450324 Msa0841320:CDS 35.0%
AGAAACATATCAGATCTTGG+AGG + chr5_4:17450308-17450327 Msa0841320:CDS 35.0%
AGCCTTAATATGACTACTTG+TGG + chr5_4:17450475-17450494 Msa0841320:CDS 35.0%
CACCACAAGTAGTCATATTA+AGG - chr5_4:17450480-17450499 None:intergenic 35.0%
CTTAATATGACTACTTGTGG+TGG + chr5_4:17450478-17450497 Msa0841320:CDS 35.0%
! ACAATCATGGACTGCTATAT+CGG + chr5_4:17450501-17450520 Msa0841320:CDS 35.0%
ACACTGTTAGAATCACAACT+AGG + chr5_4:17450536-17450555 Msa0841320:CDS 35.0%
ACTTCAATATCTTGATGTCG+AGG + chr5_4:17450728-17450747 Msa0841320:intron 35.0%
AGATGGATGCACTTTCTAAT+GGG + chr5_4:17450832-17450851 Msa0841320:intron 35.0%
TGGGAACTCATTAAATGAAG+TGG + chr5_4:17450851-17450870 Msa0841320:CDS 35.0%
! TCAAATTTGCTTACACATGC+AGG + chr5_4:17450998-17451017 Msa0841320:intron 35.0%
AAGCTTAGTAGTCTACACTA+CGG + chr5_4:17451085-17451104 Msa0841320:CDS 35.0%
TCAGCATTTGATGAAACCAT+TGG - chr5_4:17451194-17451213 None:intergenic 35.0%
! TCAGGTTGTCTTCTTATCAT+GGG + chr5_4:17451278-17451297 Msa0841320:CDS 35.0%
AATACCCTGCATCAAATTGA+AGG + chr5_4:17451380-17451399 Msa0841320:CDS 35.0%
! CAATTTCAATGACTTGGACA+AGG - chr5_4:17451493-17451512 None:intergenic 35.0%
CGGAAAAGTTGAATTAGCAA+CGG + chr5_4:17451567-17451586 Msa0841320:three_prime_UTR 35.0%
AGTGGGGAATTTAAGTATGT+GGG + chr5_4:17451800-17451819 Msa0841320:three_prime_UTR 35.0%
!! CATGAAGAAGGTTCTGAAAC+TGG - chr5_4:17445921-17445940 None:intergenic 40.0%
CAGTTTCAGAACCTTCTTCA+TGG + chr5_4:17445919-17445938 Msa0841320:five_prime_UTR 40.0%
!!! GTTTTAGAGAGTATACCAGC+AGG - chr5_4:17445946-17445965 None:intergenic 40.0%
TAGATTCTTCTACACCTCTC+AGG + chr5_4:17446031-17446050 Msa0841320:intron 40.0%
CAAGTAATGTCAACAATGGG+AGG + chr5_4:17446243-17446262 Msa0841320:CDS 40.0%
AGGAAAAGGTTGAAAAGGCA+TGG - chr5_4:17446340-17446359 None:intergenic 40.0%
! TCAACCTTTTCCTTCTTCCA+TGG + chr5_4:17446347-17446366 Msa0841320:CDS 40.0%
AGCAAGGTCAACCATATGTT+AGG - chr5_4:17446770-17446789 None:intergenic 40.0%
AAATATGGTCTCGTTGCAGT+TGG + chr5_4:17446792-17446811 Msa0841320:intron 40.0%
! CTTTGTTTATCATCTGGGTG+TGG - chr5_4:17446956-17446975 None:intergenic 40.0%
! TCTGAAACCAGAACTTAACC+TGG - chr5_4:17447015-17447034 None:intergenic 40.0%
TTAACCTTACCTGTCACATG+TGG + chr5_4:17447432-17447451 Msa0841320:intron 40.0%
ACTAGGGTTACACTTCAAAC+GGG + chr5_4:17447496-17447515 Msa0841320:intron 40.0%
TGATCATCAAAGCCCATATC+AGG - chr5_4:17447846-17447865 None:intergenic 40.0%
! GGGCATTTTCAAATCGAAGT+TGG - chr5_4:17447869-17447888 None:intergenic 40.0%
AAATGCCCGGTTAAAAGAAG+AGG + chr5_4:17447881-17447900 Msa0841320:CDS 40.0%
TTCATGTCTAAGTCCAGTGA+TGG - chr5_4:17448875-17448894 None:intergenic 40.0%
CATAGGGACAGGAATCATTT+CGG - chr5_4:17448936-17448955 None:intergenic 40.0%
AAGGTTCAGGTGGTAACATA+GGG - chr5_4:17448952-17448971 None:intergenic 40.0%
TGAAAATGTGAAGGTTCAGG+TGG - chr5_4:17448962-17448981 None:intergenic 40.0%
AGAGGGTGGTCTCTTATTAA+TGG + chr5_4:17448982-17449001 Msa0841320:CDS 40.0%
GTCAAATGAATGAACCGCTT+TGG + chr5_4:17449068-17449087 Msa0841320:CDS 40.0%
! TGAATGAACCGCTTTGGATT+CGG + chr5_4:17449074-17449093 Msa0841320:CDS 40.0%
!!! AGCATGCTAGGCTTTTTCAA+TGG + chr5_4:17449134-17449153 Msa0841320:CDS 40.0%
GGCCTTTGAATCTTAAGCAA+AGG + chr5_4:17449155-17449174 Msa0841320:CDS 40.0%
ATTATAGCTTCAGGTGCTTC+TGG + chr5_4:17449436-17449455 Msa0841320:CDS 40.0%
!! TGAGAGTATCCAACATGTGT+CGG + chr5_4:17449631-17449650 Msa0841320:intron 40.0%
AAGAAAATGAGTCTCTCTGG+TGG - chr5_4:17449887-17449906 None:intergenic 40.0%
! CCAGAGAGACTCATTTTCTT+CGG + chr5_4:17449887-17449906 Msa0841320:CDS 40.0%
! TTTTGGTGGAAGCTATCAAC+AGG - chr5_4:17449961-17449980 None:intergenic 40.0%
ATTCTTGTCCCAAATACTGC+AGG + chr5_4:17449989-17450008 Msa0841320:CDS 40.0%
GTCATTCAAGACATGCCAAA+TGG + chr5_4:17450027-17450046 Msa0841320:CDS 40.0%
ACATGCCAAATGGCTATTCA+AGG + chr5_4:17450037-17450056 Msa0841320:CDS 40.0%
CATGCCAAATGGCTATTCAA+GGG + chr5_4:17450038-17450057 Msa0841320:CDS 40.0%
! GTGTATAGTGGAATGGCATT+TGG + chr5_4:17450224-17450243 Msa0841320:CDS 40.0%
! TTTTGCAGAGGCAATGTGAA+AGG + chr5_4:17450267-17450286 Msa0841320:CDS 40.0%
TTTGCAGAGGCAATGTGAAA+GGG + chr5_4:17450268-17450287 Msa0841320:CDS 40.0%
!! CTGATATGTTTCTAGCCATG+AGG - chr5_4:17450301-17450320 None:intergenic 40.0%
GTGATTCTAACAGTGTCTTC+TGG - chr5_4:17450532-17450551 None:intergenic 40.0%
! AAGACTTTGGTGTGAGGATA+AGG - chr5_4:17450625-17450644 None:intergenic 40.0%
! AGATCAAAGACTTTGGTGTG+AGG - chr5_4:17450631-17450650 None:intergenic 40.0%
GTACCATTCTCAAAATCACC+CGG + chr5_4:17450679-17450698 Msa0841320:intron 40.0%
CAGATGGATGCACTTTCTAA+TGG + chr5_4:17450831-17450850 Msa0841320:intron 40.0%
GAAGTGGCTCATATTGCTAA+CGG + chr5_4:17450867-17450886 Msa0841320:CDS 40.0%
TATTGCTAACGGTTCACATC+CGG + chr5_4:17450878-17450897 Msa0841320:CDS 40.0%
! GAAGAAGTGCAATGCATGAA+GGG - chr5_4:17451151-17451170 None:intergenic 40.0%
GCTGATACATCATCTGAACA+AGG + chr5_4:17451209-17451228 Msa0841320:CDS 40.0%
TTGGCACTAGTAGTAGATGA+TGG - chr5_4:17451248-17451267 None:intergenic 40.0%
! CTCAGGTTGTCTTCTTATCA+TGG + chr5_4:17451277-17451296 Msa0841320:CDS 40.0%
GAAAGGTTAAGCTTTGCAGA+AGG - chr5_4:17451329-17451348 None:intergenic 40.0%
TGATTGCTGTGACACTTGAA+AGG - chr5_4:17451346-17451365 None:intergenic 40.0%
AGCACCTTCAATTTGATGCA+GGG - chr5_4:17451387-17451406 None:intergenic 40.0%
! AATTGTTCCTTCCTCCCTTT+TGG + chr5_4:17451508-17451527 Msa0841320:three_prime_UTR 40.0%
TCATAATCCAAAAGGGAGGA+AGG - chr5_4:17451518-17451537 None:intergenic 40.0%
GTAGTTGGCTAGAGTAGTAA+GGG + chr5_4:17451733-17451752 Msa0841320:three_prime_UTR 40.0%
AGTAGTAAGGGAAGGAACAA+GGG + chr5_4:17451745-17451764 Msa0841320:three_prime_UTR 40.0%
GAGTGGGGAATTTAAGTATG+TGG + chr5_4:17451799-17451818 Msa0841320:three_prime_UTR 40.0%
! TAAGTATGTGGGCTGTGTAT+TGG + chr5_4:17451811-17451830 Msa0841320:three_prime_UTR 40.0%
!! TGGTATTGATGTATGTGAGG+AGG + chr5_4:17451915-17451934 Msa0841320:three_prime_UTR 40.0%
!! GGTATTGATGTATGTGAGGA+GGG + chr5_4:17451916-17451935 Msa0841320:three_prime_UTR 40.0%
CGACCTTACTAGAAAACCAA+AGG - chr5_4:17451980-17451999 None:intergenic 40.0%
TCTCGTATGATTCGTGATGA+TGG + chr5_4:17452003-17452022 Msa0841320:three_prime_UTR 40.0%
ATGGCCTCACTAGTTAGTTA+AGG + chr5_4:17452022-17452041 Msa0841320:three_prime_UTR 40.0%
ACCACCTTAACTAACTAGTG+AGG - chr5_4:17452029-17452048 None:intergenic 40.0%
ACTAGTTAGTTAAGGTGGTG+TGG + chr5_4:17452030-17452049 Msa0841320:three_prime_UTR 40.0%
TTAGTTAAGGTGGTGTGGTT+CGG + chr5_4:17452035-17452054 Msa0841320:three_prime_UTR 40.0%
CATCACACTGTCTCTTTGTG+TGG + chr5_4:17445834-17445853 Msa0841320:five_prime_UTR 45.0%
TGCTCGTCAGATCCAAGAAA+TGG + chr5_4:17446595-17446614 Msa0841320:CDS 45.0%
GTGGTTTCAGTCCCAAATCA+TGG - chr5_4:17446991-17447010 None:intergenic 45.0%
GAATCGTCGAACTCAGATGA+AGG + chr5_4:17447033-17447052 Msa0841320:CDS 45.0%
ATACATGGCCCACCACAATT+AGG - chr5_4:17447816-17447835 None:intergenic 45.0%
!! TTGTGGTGGGCCATGTATAA+TGG + chr5_4:17447818-17447837 Msa0841320:CDS 45.0%
!! TGTGGTGGGCCATGTATAAT+GGG + chr5_4:17447819-17447838 Msa0841320:CDS 45.0%
!!! GGTCATGGAATTTTTTCCCG+TGG - chr5_4:17448708-17448727 None:intergenic 45.0%
!! ATGATGGTGGTGCCATTGTT+TGG - chr5_4:17448841-17448860 None:intergenic 45.0%
! GATGGTGGCATAAGAGATGA+TGG - chr5_4:17448857-17448876 None:intergenic 45.0%
ATCTCTTATGCCACCATCAC+TGG + chr5_4:17448859-17448878 Msa0841320:CDS 45.0%
ATGTCTAAGTCCAGTGATGG+TGG - chr5_4:17448872-17448891 None:intergenic 45.0%
! ACAGGAATCATTTCGGTGCA+TGG - chr5_4:17448929-17448948 None:intergenic 45.0%
GAAGGTTCAGGTGGTAACAT+AGG - chr5_4:17448953-17448972 None:intergenic 45.0%
CCACCCTCTTGAAAATGTGA+AGG - chr5_4:17448971-17448990 None:intergenic 45.0%
!! CCTTCACATTTTCAAGAGGG+TGG + chr5_4:17448968-17448987 Msa0841320:CDS 45.0%
GGAACTTGCAGCTTCTTCTA+TGG + chr5_4:17449027-17449046 Msa0841320:CDS 45.0%
CTTGCCCTAGCAACAATAGT+TGG - chr5_4:17449406-17449425 None:intergenic 45.0%
TGTCTGATACCGACACATGT+TGG - chr5_4:17449643-17449662 None:intergenic 45.0%
CCGAAGAAAATGAGTCTCTC+TGG - chr5_4:17449890-17449909 None:intergenic 45.0%
GTATTGTCAGCAAAATGCCG+AGG + chr5_4:17449909-17449928 Msa0841320:CDS 45.0%
AGGAAAATCAACAATGGCCC+AGG - chr5_4:17449941-17449960 None:intergenic 45.0%
GTCTTGAATGACACAACCAG+AGG - chr5_4:17450019-17450038 None:intergenic 45.0%
! TTTGGTGCACAACGTTGGTT+AGG + chr5_4:17450242-17450261 Msa0841320:CDS 45.0%
! GTTGGTTAGGAGTTTTGCAG+AGG + chr5_4:17450255-17450274 Msa0841320:CDS 45.0%
GATTGCAGTGATACCTTCTC+CGG + chr5_4:17450402-17450421 Msa0841320:intron 45.0%
ATCAAGCTCTTTCGTGCTTC+CGG - chr5_4:17450424-17450443 None:intergenic 45.0%
!! CTACTTGTGGTGGACAATCA+TGG + chr5_4:17450488-17450507 Msa0841320:CDS 45.0%
ACTAGGAAAATCACTGAGCC+TGG + chr5_4:17450553-17450572 Msa0841320:CDS 45.0%
AAGCCAAGTGGTTGAAACTG+CGG - chr5_4:17450602-17450621 None:intergenic 45.0%
ACGGAGGAGATCAAAGACTT+TGG - chr5_4:17450638-17450657 None:intergenic 45.0%
AGAATGGTACCTGAGATCTG+TGG - chr5_4:17450669-17450688 None:intergenic 45.0%
!! GTTCCGGGTGATTTTGAGAA+TGG - chr5_4:17450685-17450704 None:intergenic 45.0%
CTGCATTTGACTACAGTTCC+GGG - chr5_4:17450700-17450719 None:intergenic 45.0%
GCTGCATTTGACTACAGTTC+CGG - chr5_4:17450701-17450720 None:intergenic 45.0%
GAACTGTAGTCAAATGCAGC+TGG + chr5_4:17450701-17450720 Msa0841320:intron 45.0%
TGATGTCGAGGTCTAGATTG+CGG + chr5_4:17450740-17450759 Msa0841320:intron 45.0%
ATTGCTAACGGTTCACATCC+GGG + chr5_4:17450879-17450898 Msa0841320:CDS 45.0%
AGAAGGGAAATGCAGTTTCC+CGG - chr5_4:17450900-17450919 None:intergenic 45.0%
GAGAGTTGCACAGATCAATC+TGG + chr5_4:17451062-17451081 Msa0841320:CDS 45.0%
CTTGTCCACTCATAGCTAGT+TGG - chr5_4:17451127-17451146 None:intergenic 45.0%
! GGAAGAAGTGCAATGCATGA+AGG - chr5_4:17451152-17451171 None:intergenic 45.0%
TGCATTGCACTTCTTCCACA+AGG + chr5_4:17451155-17451174 Msa0841320:CDS 45.0%
GCATTGCACTTCTTCCACAA+GGG + chr5_4:17451156-17451175 Msa0841320:CDS 45.0%
! AGGGTTCATGATAGTGCCAA+TGG + chr5_4:17451175-17451194 Msa0841320:CDS 45.0%
! TCATCTGAACAAGGTGTCAC+AGG + chr5_4:17451218-17451237 Msa0841320:CDS 45.0%
ACAACCTGAGTTAGCAGCAT+TGG - chr5_4:17451267-17451286 None:intergenic 45.0%
!! TTTGATGCAGGGTATTGCAG+AGG - chr5_4:17451376-17451395 None:intergenic 45.0%
GAGCACCTTCAATTTGATGC+AGG - chr5_4:17451388-17451407 None:intergenic 45.0%
GGTAGTTGGCTAGAGTAGTA+AGG + chr5_4:17451732-17451751 Msa0841320:three_prime_UTR 45.0%
TTGGCTAGAGTAGTAAGGGA+AGG + chr5_4:17451737-17451756 Msa0841320:three_prime_UTR 45.0%
GAGTAGTAAGGGAAGGAACA+AGG + chr5_4:17451744-17451763 Msa0841320:three_prime_UTR 45.0%
ATGTATGTGAGGAGGGTAGA+GGG + chr5_4:17451923-17451942 Msa0841320:three_prime_UTR 45.0%
AGCGCACCAGATAATACCTT+TGG + chr5_4:17451961-17451980 Msa0841320:three_prime_UTR 45.0%
GCCTCACTAGTTAGTTAAGG+TGG + chr5_4:17452025-17452044 Msa0841320:three_prime_UTR 45.0%
TAGTTAAGGTGGTGTGGTTC+GGG + chr5_4:17452036-17452055 Msa0841320:three_prime_UTR 45.0%
AACCTTCTTCATGGTCCTGC+TGG + chr5_4:17445928-17445947 Msa0841320:five_prime_UTR 50.0%
TACCAGCAGGACCATGAAGA+AGG - chr5_4:17445933-17445952 None:intergenic 50.0%
AACCACGCCAGGTTAAGTTC+TGG + chr5_4:17447005-17447024 Msa0841320:CDS 50.0%
AACCAGAACTTAACCTGGCG+TGG - chr5_4:17447010-17447029 None:intergenic 50.0%
GAGACCACATGTGACAGGTA+AGG - chr5_4:17447439-17447458 None:intergenic 50.0%
GTTTGGAGACCACATGTGAC+AGG - chr5_4:17447444-17447463 None:intergenic 50.0%
TGGTCGTCCACTCCAAACAA+TGG + chr5_4:17448826-17448845 Msa0841320:CDS 50.0%
! GGTGGCATAAGAGATGATGG+TGG - chr5_4:17448854-17448873 None:intergenic 50.0%
! GGCATTGGATCAAAGTGCCT+TGG - chr5_4:17448905-17448924 None:intergenic 50.0%
! ATTTCGGTGCATGGTGGCAT+TGG - chr5_4:17448920-17448939 None:intergenic 50.0%
! GGAATCATTTCGGTGCATGG+TGG - chr5_4:17448926-17448945 None:intergenic 50.0%
TCAGGTGGTAACATAGGGAC+AGG - chr5_4:17448947-17448966 None:intergenic 50.0%
! GAACCGCTTTGGATTCGGAA+CGG + chr5_4:17449079-17449098 Msa0841320:CDS 50.0%
TTCGGAACGGCGAGAATGAT+AGG + chr5_4:17449092-17449111 Msa0841320:CDS 50.0%
TCGGAACGGCGAGAATGATA+GGG + chr5_4:17449093-17449112 Msa0841320:CDS 50.0%
! GTCTCTCTGGTGGATACCAA+TGG - chr5_4:17449877-17449896 None:intergenic 50.0%
TGTCAGCAAAATGCCGAGGA+AGG + chr5_4:17449913-17449932 Msa0841320:CDS 50.0%
AAAATGCCGAGGAAGGAACC+TGG + chr5_4:17449920-17449939 Msa0841320:CDS 50.0%
AAATGCCGAGGAAGGAACCT+GGG + chr5_4:17449921-17449940 Msa0841320:CDS 50.0%
CTTGTCCCAAATACTGCAGG+AGG + chr5_4:17449992-17450011 Msa0841320:CDS 50.0%
GAGGACCTCCTGCAGTATTT+GGG - chr5_4:17450000-17450019 None:intergenic 50.0%
AGAGGACCTCCTGCAGTATT+TGG - chr5_4:17450001-17450020 None:intergenic 50.0%
AAATACTGCAGGAGGTCCTC+TGG + chr5_4:17450000-17450019 Msa0841320:CDS 50.0%
!! TGGCATTTGGTGCACAACGT+TGG + chr5_4:17450237-17450256 Msa0841320:CDS 50.0%
TGAAAGGGTTGCAAGCCTCA+TGG + chr5_4:17450283-17450302 Msa0841320:CDS 50.0%
CAAGAATCACTCCACTAGGC+TGG - chr5_4:17450579-17450598 None:intergenic 50.0%
TTGCCGCAGTTTCAACCACT+TGG + chr5_4:17450596-17450615 Msa0841320:CDS 50.0%
GTGAGGATAAGGAAGCCAAG+TGG - chr5_4:17450614-17450633 None:intergenic 50.0%
! CACTACGGTCGACGTTGATT+CGG + chr5_4:17451100-17451119 Msa0841320:CDS 50.0%
TCGGTCCAACTAGCTATGAG+TGG + chr5_4:17451119-17451138 Msa0841320:CDS 50.0%
GGCACTATCATGAACCCTTG+TGG - chr5_4:17451173-17451192 None:intergenic 50.0%
AGTGCCAATGCTGCTAACTC+AGG + chr5_4:17451260-17451279 Msa0841320:CDS 50.0%
! TTGGAAGGTGCACTAGTGGT+TGG - chr5_4:17451458-17451477 None:intergenic 50.0%
! CTACTTGGAAGGTGCACTAG+TGG - chr5_4:17451462-17451481 None:intergenic 50.0%
AGGTGTGCACACTACTTGGA+AGG - chr5_4:17451473-17451492 None:intergenic 50.0%
GACAAGGTGTGCACACTACT+TGG - chr5_4:17451477-17451496 None:intergenic 50.0%
GATGTATGTGAGGAGGGTAG+AGG + chr5_4:17451922-17451941 Msa0841320:three_prime_UTR 50.0%
! TTTGGGACTGAAACCACGCC+AGG + chr5_4:17446994-17447013 Msa0841320:CDS 55.0%
!! GGTGGTGCCATTGTTTGGAG+TGG - chr5_4:17448836-17448855 None:intergenic 55.0%
TCGCCGTTCCGAATCCAAAG+CGG - chr5_4:17449085-17449104 None:intergenic 55.0%
GTGCTTCTGGCCATGCAAGT+GGG + chr5_4:17449449-17449468 Msa0841320:CDS 55.0%
GCTGAAGAGTCCCACTTGCA+TGG - chr5_4:17449462-17449481 None:intergenic 55.0%
TGCAAGTGGGACTCTTCAGC+TGG + chr5_4:17449462-17449481 Msa0841320:CDS 55.0%
AGTGGGACTCTTCAGCTGGT+AGG + chr5_4:17449466-17449485 Msa0841320:intron 55.0%
AATGGCCCAGGTTCCTTCCT+CGG - chr5_4:17449929-17449948 None:intergenic 55.0%
CTCTTTCGTGCTTCCGGAGA+AGG - chr5_4:17450418-17450437 None:intergenic 55.0%
GCGGCAAGAATCACTCCACT+AGG - chr5_4:17450583-17450602 None:intergenic 55.0%
GAGATCTGTGGCGTTCGTCA+CGG - chr5_4:17450657-17450676 None:intergenic 55.0%
TGACGAACGCCACAGATCTC+AGG + chr5_4:17450657-17450676 Msa0841320:CDS 55.0%
!! GATGCAGGGTATTGCAGAGG+TGG - chr5_4:17451373-17451392 None:intergenic 55.0%
GGTGCTTCTGGCCATGCAAG+TGG + chr5_4:17449448-17449467 Msa0841320:CDS 60.0%
! ATCACTCCACTAGGCTGGCC+AGG - chr5_4:17450574-17450593 None:intergenic 60.0%
ATCTGTGGCGTTCGTCACGG+AGG - chr5_4:17450654-17450673 None:intergenic 60.0%
TGGTGCGCTCTTGACTCCCT+CGG - chr5_4:17451950-17451969 None:intergenic 60.0%
ACTGAGCCTGGCCAGCCTAG+TGG + chr5_4:17450565-17450584 Msa0841320:CDS 65.0%
TGAGGAGGGTAGAGGGACCG+AGG + chr5_4:17451930-17451949 Msa0841320:three_prime_UTR 65.0%
GAGGAGGGTAGAGGGACCGA+GGG + chr5_4:17451931-17451950 Msa0841320:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 17445812 17452071 17445812 ID=Msa0841320;Name=Msa0841320
chr5_4 mRNA 17445812 17452071 17445812 ID=Msa0841320-mRNA-1;Parent=Msa0841320;Name=Msa0841320-mRNA-1;_AED=0.08;_eAED=0.08;_QI=213|1|0.83|1|0.90|0.83|12|590|802
chr5_4 exon 17445812 17445949 17445812 ID=Msa0841320-mRNA-1:exon:7419;Parent=Msa0841320-mRNA-1
chr5_4 exon 17446153 17446368 17446153 ID=Msa0841320-mRNA-1:exon:7420;Parent=Msa0841320-mRNA-1
chr5_4 exon 17446446 17446621 17446446 ID=Msa0841320-mRNA-1:exon:7421;Parent=Msa0841320-mRNA-1
chr5_4 exon 17446937 17447054 17446937 ID=Msa0841320-mRNA-1:exon:7422;Parent=Msa0841320-mRNA-1
chr5_4 exon 17447711 17447902 17447711 ID=Msa0841320-mRNA-1:exon:7423;Parent=Msa0841320-mRNA-1
chr5_4 exon 17448791 17449261 17448791 ID=Msa0841320-mRNA-1:exon:7424;Parent=Msa0841320-mRNA-1
chr5_4 exon 17449382 17449483 17449382 ID=Msa0841320-mRNA-1:exon:7425;Parent=Msa0841320-mRNA-1
chr5_4 exon 17449847 17450059 17449847 ID=Msa0841320-mRNA-1:exon:7426;Parent=Msa0841320-mRNA-1
chr5_4 exon 17450161 17450329 17450161 ID=Msa0841320-mRNA-1:exon:7427;Parent=Msa0841320-mRNA-1
chr5_4 exon 17450410 17450678 17450410 ID=Msa0841320-mRNA-1:exon:7428;Parent=Msa0841320-mRNA-1
chr5_4 exon 17450834 17450929 17450834 ID=Msa0841320-mRNA-1:exon:7429;Parent=Msa0841320-mRNA-1
chr5_4 exon 17451020 17452071 17451020 ID=Msa0841320-mRNA-1:exon:7430;Parent=Msa0841320-mRNA-1
chr5_4 five_prime_UTR 17445812 17445949 17445812 ID=Msa0841320-mRNA-1:five_prime_utr;Parent=Msa0841320-mRNA-1
chr5_4 five_prime_UTR 17446153 17446227 17446153 ID=Msa0841320-mRNA-1:five_prime_utr;Parent=Msa0841320-mRNA-1
chr5_4 CDS 17446228 17446368 17446228 ID=Msa0841320-mRNA-1:cds;Parent=Msa0841320-mRNA-1
chr5_4 CDS 17446446 17446621 17446446 ID=Msa0841320-mRNA-1:cds;Parent=Msa0841320-mRNA-1
chr5_4 CDS 17446937 17447054 17446937 ID=Msa0841320-mRNA-1:cds;Parent=Msa0841320-mRNA-1
chr5_4 CDS 17447711 17447902 17447711 ID=Msa0841320-mRNA-1:cds;Parent=Msa0841320-mRNA-1
chr5_4 CDS 17448791 17449261 17448791 ID=Msa0841320-mRNA-1:cds;Parent=Msa0841320-mRNA-1
chr5_4 CDS 17449382 17449483 17449382 ID=Msa0841320-mRNA-1:cds;Parent=Msa0841320-mRNA-1
chr5_4 CDS 17449847 17450059 17449847 ID=Msa0841320-mRNA-1:cds;Parent=Msa0841320-mRNA-1
chr5_4 CDS 17450161 17450329 17450161 ID=Msa0841320-mRNA-1:cds;Parent=Msa0841320-mRNA-1
chr5_4 CDS 17450410 17450678 17450410 ID=Msa0841320-mRNA-1:cds;Parent=Msa0841320-mRNA-1
chr5_4 CDS 17450834 17450929 17450834 ID=Msa0841320-mRNA-1:cds;Parent=Msa0841320-mRNA-1
chr5_4 CDS 17451020 17451481 17451020 ID=Msa0841320-mRNA-1:cds;Parent=Msa0841320-mRNA-1
chr5_4 three_prime_UTR 17451482 17452071 17451482 ID=Msa0841320-mRNA-1:three_prime_utr;Parent=Msa0841320-mRNA-1
Gene Sequence

>Msa0841320

ATGTATGGTGATTGTCAAGTAATGTCAACAATGGGAGGGAATGTAGTAGTAAACTCAGAATCTCTCTTCTCTTCTCCGATCCATAACTCTAACTTCAACTTCATGTCAACCATGCCTTTTCAACCTTTTCCTTCTTCCATGAAAGAAGAAGAAGGAATATTGAGAGGTAAAGAAGAGATAATGGATCAAAGTGGTTCAGGTAGTGAACAAGTTGAAGATAAATCAGGAAATGAACAAGAGATTAATAATGAACAACAAGCTACAAAGAAGAAACGTTATCATAGACACACTGCTCGTCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCACACCCAGATGATAAACAAAGACTGAAACTAAGCCATGATTTGGGACTGAAACCACGCCAGGTTAAGTTCTGGTTTCAGAATCGTCGAACTCAGATGAAGGCACAACAAGATCGTTCTGATAATGTGATACTTAGAGCAGAGAATGAGAGTTTGAAGAATGAGAACTATAGGCTACAATCGGCATTACGTAATATTTTATGTCCTAATTGTGGTGGGCCATGTATAATGGGACCTGATATGGGCTTTGATGATCACCAACTTCGATTTGAAAATGCCCGGTTAAAAGAAGAGCTAGAACGTGTGTGCTGCATAACATCAAGATACACTGGTCGTCCACTCCAAACAATGGCACCACCATCATCTCTTATGCCACCATCACTGGACTTAGACATGAACATTTATCCAAGGCACTTTGATCCAATGCCACCATGCACCGAAATGATTCCTGTCCCTATGTTACCACCTGAACCTTCACATTTTCAAGAGGGTGGTCTCTTATTAATGGAAGATGAGAAATCACTTGCTATGGAACTTGCAGCTTCTTCTATGGCTGAACTTGTTAAGATGTGTCAAATGAATGAACCGCTTTGGATTCGGAACGGCGAGAATGATAGGGAAGTTCTTAATTTTGATGAGCATGCTAGGCTTTTTCAATGGCCTTTGAATCTTAAGCAAAGGAATGAGTTAAGGAATGAAGCTACACGTGATTCTGCTGTTGTTATTATGAATAGTGTTACTCTTGTTGATGCTTTTCTAGATGCTCAAAAATGGATGGAATTGTTTCCAACTATTGTTGCTAGGGCAAGAACTGTTCAAATTATAGCTTCAGGTGCTTCTGGCCATGCAAGTGGGACTCTTCAGCTGATGCACGCAGAATTCCAAGTTCTTTCTCCATTGGTATCCACCAGAGAGACTCATTTTCTTCGGTATTGTCAGCAAAATGCCGAGGAAGGAACCTGGGCCATTGTTGATTTTCCTGTTGATAGCTTCCACCAAAACTTTCACAATTCTTGTCCCAAATACTGCAGGAGGTCCTCTGGTTGTGTCATTCAAGACATGCCAAATGGCTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTTGTAGAGAAACCAGTCCATCAAATATTTAGTAACTATGTGTATAGTGGAATGGCATTTGGTGCACAACGTTGGTTAGGAGTTTTGCAGAGGCAATGTGAAAGGGTTGCAAGCCTCATGGCTAGAAACATATCAGATCTTGGAGTGATACCTTCTCCGGAAGCACGAAAGAGCTTGATGAAATTAGCAAATAGGATGATAAAAACTTTTAGCCTTAATATGACTACTTGTGGTGGACAATCATGGACTGCTATATCGGATTCACCAGAAGACACTGTTAGAATCACAACTAGGAAAATCACTGAGCCTGGCCAGCCTAGTGGAGTGATTCTTGCCGCAGTTTCAACCACTTGGCTTCCTTATCCTCACACCAAAGTCTTTGATCTCCTCCGTGACGAACGCCACAGATCTCAGATGGATGCACTTTCTAATGGGAACTCATTAAATGAAGTGGCTCATATTGCTAACGGTTCACATCCGGGAAACTGCATTTCCCTTCTTCGCATAAATGTAGCAAGCAACTCATCTCAAAATGTAGAGCTAATGCTACAAGAGAGTTGCACAGATCAATCTGGAAGCTTAGTAGTCTACACTACGGTCGACGTTGATTCGGTCCAACTAGCTATGAGTGGACAAGACCCTTCATGCATTGCACTTCTTCCACAAGGGTTCATGATAGTGCCAATGGTTTCATCAAATGCTGATACATCATCTGAACAAGGTGTCACAGGAACACCATCATCTACTACTAGTGCCAATGCTGCTAACTCAGGTTGTCTTCTTATCATGGGAATGCAAGTTCTAGCAAGCACAATTCCTTCTGCAAAGCTTAACCTTTCAAGTGTCACAGCAATCAATAACCACCTCTGCAATACCCTGCATCAAATTGAAGGTGCTCTTTGTAGCAGCACTAACAACAATTGCTTTGTTGGATCTTGCAATGAACCAACCACTAGTGCACCTTCCAAGTAG
Protein sequence

>Msa0841320

MYGDCQVMSTMGGNVVVNSESLFSSPIHNSNFNFMSTMPFQPFPSSMKEEEGILRGKEEIMDQSGSGSEQVEDKSGNEQEINNEQQATKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENESLKNENYRLQSALRNILCPNCGGPCIMGPDMGFDDHQLRFENARLKEELERVCCITSRYTGRPLQTMAPPSSLMPPSLDLDMNIYPRHFDPMPPCTEMIPVPMLPPEPSHFQEGGLLLMEDEKSLAMELAASSMAELVKMCQMNEPLWIRNGENDREVLNFDEHARLFQWPLNLKQRNELRNEATRDSAVVIMNSVTLVDAFLDAQKWMELFPTIVARARTVQIIASGASGHASGTLQLMHAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFHQNFHNSCPKYCRRSSGCVIQDMPNGYSRVTWVEHAKVVEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKSLMKLANRMIKTFSLNMTTCGGQSWTAISDSPEDTVRITTRKITEPGQPSGVILAAVSTTWLPYPHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTVDVDSVQLAMSGQDPSCIALLPQGFMIVPMVSSNADTSSEQGVTGTPSSTTSANAANSGCLLIMGMQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEGALCSSTNNNCFVGSCNEPTTSAPSK*