AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0802840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802840 MtrunA17_Chr5g0410711 98.130 802 14 1 1 802 1 801 0.0 1642
Msa0802840 MtrunA17_Chr6g0481041 47.260 730 367 11 61 779 1 723 0.0 659
Msa0802840 MtrunA17_Chr2g0322731 44.429 736 360 15 57 781 70 767 0.0 620
Msa0802840 MtrunA17_Chr4g0024351 46.023 704 337 13 89 781 60 731 0.0 614
Msa0802840 MtrunA17_Chr8g0350321 44.027 745 386 16 49 779 79 806 0.0 613
Msa0802840 MtrunA17_Chr7g0246631 44.170 729 368 16 66 779 70 774 0.0 601
Msa0802840 MtrunA17_Chr1g0203671 41.272 739 406 13 57 779 63 789 0.0 570
Msa0802840 MtrunA17_Chr6g0472471 41.791 737 396 17 63 779 42 765 2.70e-176 526
Msa0802840 MtrunA17_Chr2g0331581 38.061 691 380 10 93 779 143 789 8.40e-160 484
Msa0802840 MtrunA17_Chr7g0224451 41.322 484 216 9 89 565 16 438 1.44e-118 365
Msa0802840 MtrunA17_Chr5g0394111 36.542 509 294 12 282 779 156 646 4.89e-100 323
Msa0802840 MtrunA17_Chr5g0394111 45.390 141 72 3 71 211 18 153 3.61e-27 117
Msa0802840 MtrunA17_Chr2g0292731 34.175 515 298 14 282 779 58 548 9.80e-89 291
Msa0802840 MtrunA17_Chr2g0292741 33.333 513 300 15 282 779 50 535 2.27e-83 276
Msa0802840 MtrunA17_Chr7g0224481 40.526 380 164 7 89 462 16 339 4.66e-81 263
Msa0802840 MtrunA17_Chr7g0224491 42.902 317 155 8 465 779 1 293 1.97e-72 239
Msa0802840 MtrunA17_Chr2g0292761 32.907 547 291 21 170 705 3 484 5.52e-70 240
Msa0802840 MtrunA17_Chr5g0419821 50.806 124 59 2 88 210 32 154 5.83e-34 128
Msa0802840 MtrunA17_Chr2g0319671 32.710 214 127 5 341 553 104 301 1.77e-26 110
Msa0802840 MtrunA17_Chr2g0319691 39.024 123 71 2 401 523 1 119 3.07e-20 88.2
Msa0802840 MtrunA17_Chr2g0304191 33.577 137 79 3 295 425 1 131 1.46e-19 85.9
Msa0802840 MtrunA17_Chr2g0319681 27.615 239 155 5 545 779 1 225 1.47e-18 85.9
Msa0802840 MtrunA17_Chr7g0224431 33.129 163 66 3 310 472 1 120 6.81e-18 80.5
Msa0802840 MtrunA17_Chr1g0205981 34.359 195 96 8 144 329 1 172 1.33e-17 82.0
Msa0802840 MtrunA17_Chr2g0319701 28.151 238 153 8 545 779 1 223 2.58e-15 76.6
Msa0802840 MtrunA17_Chr7g0224461 38.333 120 67 2 660 779 2 114 4.63e-14 69.3
Msa0802840 MtrunA17_Chr4g0055851 35.115 131 84 1 48 177 75 205 6.95e-14 73.2
Msa0802840 MtrunA17_Chr7g0265521 36.937 111 64 2 77 184 51 158 1.87e-11 64.7
Msa0802840 MtrunA17_Chr4g0028991 34.694 98 56 2 92 181 28 125 2.11e-11 67.8
Msa0802840 MtrunA17_Chr7g0258831 31.250 128 85 1 64 188 129 256 5.84e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802840 AT5G46880.3 55.235 831 288 21 8 779 1 806 0.0 841
Msa0802840 AT5G46880.1 55.235 831 288 21 8 779 1 806 0.0 841
Msa0802840 AT5G46880.2 55.235 831 288 21 8 779 1 806 0.0 841
Msa0802840 AT4G17710.1 48.586 778 305 15 13 779 10 703 0.0 662
Msa0802840 AT4G04890.2 44.709 756 381 13 34 779 7 735 0.0 648
Msa0802840 AT4G04890.1 44.709 756 381 13 34 779 7 735 0.0 648
Msa0802840 AT1G05230.8 44.505 737 352 16 51 779 29 716 0.0 625
Msa0802840 AT1G05230.4 44.505 737 352 16 51 779 29 716 0.0 625
Msa0802840 AT1G05230.9 44.505 737 352 16 51 779 29 716 0.0 625
Msa0802840 AT1G05230.10 44.505 737 352 16 51 779 29 716 0.0 625
Msa0802840 AT1G05230.7 44.505 737 352 16 51 779 29 716 0.0 625
Msa0802840 AT1G05230.11 44.505 737 352 16 51 779 29 716 0.0 625
Msa0802840 AT1G05230.2 44.505 737 352 16 51 779 29 716 0.0 625
Msa0802840 AT1G05230.6 44.505 737 352 16 51 779 29 716 0.0 625
Msa0802840 AT1G05230.5 44.505 737 352 16 51 779 29 716 0.0 625
Msa0802840 AT1G05230.1 44.505 737 352 16 51 779 29 716 0.0 625
Msa0802840 AT1G05230.3 44.233 737 352 16 51 779 29 714 0.0 621
Msa0802840 AT4G21750.2 43.586 764 374 15 55 782 19 761 0.0 620
Msa0802840 AT4G21750.1 43.586 764 374 15 55 782 19 761 0.0 620
Msa0802840 AT4G21750.3 43.586 764 374 15 55 782 19 761 0.0 620
Msa0802840 AT4G21750.4 43.586 764 374 15 55 782 19 761 0.0 620
Msa0802840 AT1G73360.1 46.208 712 344 15 89 785 32 719 0.0 598
Msa0802840 AT4G00730.1 42.391 736 373 16 55 779 103 798 0.0 573
Msa0802840 AT1G17920.2 44.398 723 336 17 75 779 7 681 0.0 572
Msa0802840 AT1G17920.1 44.398 723 336 17 75 779 7 681 0.0 572
Msa0802840 AT3G61150.1 40.591 744 390 16 63 779 85 803 0.0 554
Msa0802840 AT1G05230.12 46.141 609 288 13 51 651 29 605 0.0 542
Msa0802840 AT2G32370.1 38.289 713 382 15 75 776 52 717 3.86e-156 473
Msa0802840 AT5G52170.3 38.986 690 346 18 93 779 61 678 1.46e-155 469
Msa0802840 AT5G52170.1 38.986 690 346 18 93 779 61 678 1.46e-155 469
Msa0802840 AT5G52170.2 38.728 692 350 18 93 779 61 683 3.38e-155 469
Msa0802840 AT1G79840.3 38.122 703 362 17 89 779 43 684 5.00e-149 453
Msa0802840 AT1G79840.6 38.122 703 362 17 89 779 43 684 5.00e-149 453
Msa0802840 AT1G79840.1 38.122 703 362 17 89 779 101 742 1.60e-148 454
Msa0802840 AT1G79840.2 38.122 703 362 17 89 779 130 771 9.39e-148 452
Msa0802840 AT3G03260.1 35.493 741 409 19 61 779 1 694 5.98e-136 419
Msa0802840 AT4G00730.2 45.397 478 226 10 55 524 103 553 1.43e-135 414
Msa0802840 AT5G17320.1 34.097 742 423 18 72 779 6 715 6.58e-126 394
Msa0802840 AT1G79840.4 38.448 567 292 13 89 645 101 620 2.13e-122 382
Msa0802840 AT1G34650.1 34.384 730 409 24 84 779 12 705 2.01e-114 363
Msa0802840 AT4G25530.1 31.215 708 417 13 83 779 34 682 3.73e-112 357
Msa0802840 AT3G03260.2 36.861 567 321 14 61 618 1 539 7.27e-110 346
Msa0802840 AT1G79840.5 39.821 447 219 11 82 523 94 495 4.46e-93 301
Msa0802840 AT5G07260.1 25.464 593 351 19 154 736 9 520 8.51e-39 152
Msa0802840 AT5G07260.2 25.295 593 347 20 154 736 9 515 2.51e-38 150
Msa0802840 AT4G26920.1 25.431 232 152 10 297 523 74 289 1.19e-11 68.2
Msa0802840 AT5G60690.1 35.714 98 55 2 92 181 25 122 1.66e-11 68.6

Find 235 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGTTCCTTCCTCTCTTT+TGG 0.174938 5_3:+17495664 Msa0802840:three_prime_UTR
AGAGGACCTCCTGCAGTATT+TGG 0.191744 5_3:-17494140 None:intergenic
AGAGATACGCTTCCATTTCT+TGG 0.195781 5_3:-17490795 None:intergenic
TTCAGTCTTTGTTTATCATC+TGG 0.234084 5_3:-17491135 None:intergenic
ATGTATAATGGGACCTGATA+TGG 0.242844 5_3:+17492007 Msa0802840:CDS
AGAGGGTGGTCTCTTATTAA+TGG 0.264546 5_3:+17493123 Msa0802840:CDS
AGAATAGTGACAAGTGAATT+AGG 0.271863 5_3:+17495789 Msa0802840:three_prime_UTR
ATTATAGCTTCAGGTGCTTC+TGG 0.293148 5_3:+17493578 Msa0802840:CDS
CAGATGGATGCACTTTCTAA+TGG 0.294055 5_3:+17494988 Msa0802840:intron
CATAGTTACTAAATATTTGA+TGG 0.294552 5_3:-17494337 None:intergenic
ATCAAGCTCTTTCGCGCTTC+CGG 0.296499 5_3:-17494556 None:intergenic
GAGAGGTAAAGAAGAGATAA+TGG 0.313794 5_3:+17490654 Msa0802840:CDS
GGAACTTGCAGCTTCTTCTA+TGG 0.317436 5_3:+17493168 Msa0802840:CDS
TTTAAGTATGTGAGGTGTAT+TGG 0.319201 5_3:+17495964 Msa0802840:three_prime_UTR
CACCACAAGTGGTCATATTA+AGG 0.319412 5_3:-17494612 None:intergenic
CAGTTTCAGAACCTTCTTCA+TGG 0.328797 5_3:+17490083 Msa0802840:five_prime_UTR
ACTGAAACTAAGCCATGATT+TGG 0.329620 5_3:+17491152 Msa0802840:CDS
GCTTGATGAAATTAGCAAAT+AGG 0.352169 5_3:+17494572 Msa0802840:CDS
TTAGTCAGGGTGGTGTGGTT+CGG 0.354809 5_3:+17496182 Msa0802840:three_prime_UTR
CATGAAGAAGGTTCTGAAAC+TGG 0.361754 5_3:-17490082 None:intergenic
TTGTGGTGGGCCATGTATAA+TGG 0.362098 5_3:+17491995 Msa0802840:CDS
CTCAGGTTGTCTTCTTATCA+TGG 0.367340 5_3:+17495434 Msa0802840:CDS
ACAATTCATGTTCCCATAGT+TGG 0.381813 5_3:-17495863 None:intergenic
GGTAATTAACTAGAGTAGTA+AGG 0.382206 5_3:+17495887 Msa0802840:three_prime_UTR
AGAAAACCAAAGGTATTATC+TGG 0.382461 5_3:-17496114 None:intergenic
TAGTCAGGGTGGTGTGGTTC+GGG 0.386874 5_3:+17496183 Msa0802840:three_prime_UTR
ATACATGGCCCACCACAATT+AGG 0.390584 5_3:-17491990 None:intergenic
ATAATGGATCAAAGTGGTTC+AGG 0.391002 5_3:+17490670 Msa0802840:CDS
TCAGTCTTTGTTTATCATCT+GGG 0.391749 5_3:-17491134 None:intergenic
ACTAACAGCAATTGCTTTGT+TGG 0.392291 5_3:+17495576 Msa0802840:CDS
AGATGGATGCACTTTCTAAT+GGG 0.399022 5_3:+17494989 Msa0802840:intron
ACTGTTCAAATTATAGCTTC+AGG 0.399428 5_3:+17493569 Msa0802840:CDS
CTCTTTCGCGCTTCCGGAGA+AGG 0.400542 5_3:-17494550 None:intergenic
ATGGTGGTGGTGCCATTGTT+TGG 0.412301 5_3:-17492979 None:intergenic
GTGATTCTAACGGTGTCTTC+TGG 0.415111 5_3:-17494664 None:intergenic
AATTATATGCAGTTTGTTCA+AGG 0.423365 5_3:+17491101 Msa0802840:intron
ATCACTCCACTGGGTTGGCC+AGG 0.423809 5_3:-17494706 None:intergenic
GAGGACCTCCTGCAGTATTT+GGG 0.424936 5_3:-17494139 None:intergenic
GACAAGGAGTGCACACTACT+TGG 0.425308 5_3:-17495631 None:intergenic
CTAACAGCAATTGCTTTGTT+GGG 0.426498 5_3:+17495577 Msa0802840:CDS
GATGGCCTCATTAGTTAGTC+AGG 0.426555 5_3:+17496168 Msa0802840:three_prime_UTR
ATCTCTTATGCCACCATCAC+TGG 0.427634 5_3:+17493000 Msa0802840:CDS
TATTGCTAACGGTTCACATC+CGG 0.428988 5_3:+17495035 Msa0802840:CDS
CAAATTGAAGGTGCTCTTTG+TGG 0.429451 5_3:+17495549 Msa0802840:CDS
TCTTGAAAATGTGAAGGTTC+AGG 0.429683 5_3:-17493103 None:intergenic
GTCAAATGAACGGACCGCTT+TGG 0.431441 5_3:+17493209 Msa0802840:CDS
TGTACCCTTGAATAGCCATT+TGG 0.431448 5_3:-17494184 None:intergenic
TTACTAAATATTTGATGGAC+TGG 0.435592 5_3:-17494332 None:intergenic
TTTGGTGCACAACGTTGGTT+AGG 0.436385 5_3:+17494377 Msa0802840:CDS
AGCGCACCAGATAATACCTT+TGG 0.438255 5_3:+17496108 Msa0802840:three_prime_UTR
AGAAGGGAAATGCAGTTTCC+CGG 0.438847 5_3:-17495054 None:intergenic
AAGACTTTGGTATGAGGATA+AGG 0.441439 5_3:-17494757 None:intergenic
AACTTACATTTATGCGAAGA+AGG 0.441914 5_3:-17495071 None:intergenic
TGATCATCAAAGCCCATATC+AGG 0.443548 5_3:-17492020 None:intergenic
TCAACCCTTTCCTTCTTCCA+TGG 0.443578 5_3:+17490512 Msa0802840:CDS
TGCTCGTCAGATCCAAGAAA+TGG 0.444102 5_3:+17490783 Msa0802840:CDS
GATTGCAGTGATACCTTCTC+CGG 0.445102 5_3:+17494537 Msa0802840:intron
TTTAGTAACTATGTGTATAG+TGG 0.445206 5_3:+17494347 Msa0802840:CDS
TTTGAACAGAAAGAAGAAGA+AGG 0.446907 5_3:+17490625 Msa0802840:intron
CTTGCCCTAGCAACAATAGT+TGG 0.448200 5_3:-17493545 None:intergenic
GTTTGAAGAATGAGAACTAT+AGG 0.449425 5_3:+17491937 Msa0802840:CDS
ACTATGGGAACATGAATTGT+AGG 0.449987 5_3:+17495866 Msa0802840:three_prime_UTR
TTCGTAGCGGTGAGAATGAT+AGG 0.451667 5_3:+17493233 Msa0802840:CDS
GCTAGAAACATATCAGATCT+TGG 0.453635 5_3:+17494440 Msa0802840:CDS
ACAATCATGGACTGCTATAT+CGG 0.455597 5_3:+17494636 Msa0802840:CDS
ATTCCAAGTTCTTTCTCCAT+TGG 0.455604 5_3:+17494000 Msa0802840:CDS
CCGAAGAAAATGAGTCTCTC+TGG 0.461082 5_3:-17494029 None:intergenic
TTCCTTTGCTTAAGATTCAA+AGG 0.462942 5_3:-17493298 None:intergenic
AAATACTGCAGGAGGTCCTC+TGG 0.464331 5_3:+17494142 Msa0802840:CDS
TGTGGTGGGCCATGTATAAT+GGG 0.465808 5_3:+17491996 Msa0802840:CDS
CTGAAACTAAGCCATGATTT+GGG 0.466763 5_3:+17491153 Msa0802840:CDS
GTTTCCAACTATTGTTGCTA+GGG 0.472521 5_3:+17493541 Msa0802840:CDS
GAACAAGTTGAAGATAAGTC+AGG 0.474547 5_3:+17490697 Msa0802840:CDS
TGTTTCCAACTATTGTTGCT+AGG 0.475872 5_3:+17493540 Msa0802840:CDS
AACCACGCCAGGTTAAGTTC+TGG 0.478239 5_3:+17491181 Msa0802840:CDS
GTGGTTTCAGTCCCAAATCA+TGG 0.480470 5_3:-17491164 None:intergenic
ATTTCTGTGCATGGTGGCAT+TGG 0.482085 5_3:-17493058 None:intergenic
TGACGAACGCCACAGATCTC+AGG 0.483891 5_3:+17494792 Msa0802840:CDS
GACAGTGTGATGAAATGAAA+GGG 0.486482 5_3:-17489987 None:intergenic
AATGGCCCAGGTTCCTTCCT+CGG 0.487016 5_3:-17494068 None:intergenic
GAGCACCTTCAATTTGATGC+AGG 0.487171 5_3:-17495542 None:intergenic
AATTATGTATGCAGGTAACA+TGG 0.487587 5_3:+17494282 Msa0802840:intron
TGTATAATGGGACCTGATAT+GGG 0.487914 5_3:+17492008 Msa0802840:CDS
CATCACACTGTCTCTTTGTG+TGG 0.489404 5_3:+17489998 Msa0802840:five_prime_UTR
GTAATTAACTAGAGTAGTAA+GGG 0.494190 5_3:+17495888 Msa0802840:three_prime_UTR
ACATGCCAAATGGCTATTCA+AGG 0.495938 5_3:+17494179 Msa0802840:CDS
AGATGAGAAATCACTTGCTA+TGG 0.496183 5_3:+17493147 Msa0802840:CDS
GAAAATAATTAAATTAGCAA+TGG 0.496335 5_3:-17495841 None:intergenic
CTTTGTTTATCATCTGGGTG+TGG 0.497200 5_3:-17491129 None:intergenic
ATACCAATGGAGAAAGAACT+TGG 0.497986 5_3:-17494003 None:intergenic
GAGAGTTGCACAGATCAATC+TGG 0.500290 5_3:+17495219 Msa0802840:CDS
TTGGAGGGTGCACTAGTGGT+TGG 0.501171 5_3:-17495612 None:intergenic
GAAGAAGGAAAGGGTTGAAA+AGG 0.502627 5_3:-17490507 None:intergenic
AATACCCTGCATCAAATTGA+AGG 0.504038 5_3:+17495537 Msa0802840:CDS
TATGTATGTGAGGAGGGTAG+AGG 0.505862 5_3:+17496069 Msa0802840:three_prime_UTR
TCGCCGCAGTTTCAACCACT+TGG 0.506037 5_3:+17494731 Msa0802840:CDS
GTGTATAGTGGAATGGCATT+TGG 0.507399 5_3:+17494359 Msa0802840:CDS
CACGACAGTCGATGTTGATT+CGG 0.508112 5_3:+17495257 Msa0802840:CDS
TGAAGTTGAAGCTAGAGTTA+TGG 0.509313 5_3:-17490473 None:intergenic
TGGTGCGCTCTTGACTCCCT+CGG 0.512377 5_3:-17496094 None:intergenic
GAGTAGTAAGGGAAGGAACA+AGG 0.514870 5_3:+17495899 Msa0802840:three_prime_UTR
TGCGGCGAGAATCACTCCAC+TGG 0.516058 5_3:-17494716 None:intergenic
TATTACCATGGAAGAAGGAA+AGG 0.517256 5_3:-17490517 None:intergenic
TCTCGTATGATTCGTGATGA+TGG 0.519461 5_3:+17496150 Msa0802840:three_prime_UTR
CTTGTCCACTCATAGCTAGT+TGG 0.519744 5_3:-17495281 None:intergenic
GGTGCTTCTGGCCATGCAAG+TGG 0.520606 5_3:+17493590 Msa0802840:CDS
ATTGCTAACGGTTCACATCC+GGG 0.521364 5_3:+17495036 Msa0802840:CDS
TGTCAAGTAATGTCAACAAT+GGG 0.522321 5_3:+17490405 Msa0802840:CDS
CCACTTGTGGTGGACAATCA+TGG 0.523426 5_3:+17494623 Msa0802840:CDS
GAAGGTTCAGGTGGTAACAT+AGG 0.523574 5_3:-17493091 None:intergenic
TGGTAATTAACATTGTGAAA+TGG 0.527711 5_3:+17496042 Msa0802840:three_prime_UTR
GAAGGAACAATTTCAATGAC+TGG 0.529168 5_3:-17495653 None:intergenic
ACAACCTGAGTTAGCAGCAT+TGG 0.530947 5_3:-17495421 None:intergenic
TGCAAGTGGGACTCTTCAGC+TGG 0.531576 5_3:+17493604 Msa0802840:CDS
GGTATTTATGTATGTGAGGA+GGG 0.532602 5_3:+17496063 Msa0802840:three_prime_UTR
TCAGGTTGTCTTCTTATCAT+GGG 0.533492 5_3:+17495435 Msa0802840:CDS
TGAGGAGGGTAGAGGGACCG+AGG 0.534032 5_3:+17496077 Msa0802840:three_prime_UTR
ACTAGGAAAATCACTGAGCC+TGG 0.535391 5_3:+17494688 Msa0802840:CDS
AAAATGCCGAGGAAGGAACC+TGG 0.537052 5_3:+17494062 Msa0802840:CDS
CTACTTGGAGGGTGCACTAG+TGG 0.538012 5_3:-17495616 None:intergenic
AACTTCGATTTGAAAATGCC+CGG 0.538277 5_3:+17492045 Msa0802840:CDS
AGGAAAATCAACAATGGCCC+AGG 0.539512 5_3:-17494080 None:intergenic
AGATCAAAGACTTTGGTATG+AGG 0.540751 5_3:-17494763 None:intergenic
GGCCTTTGAATCTTAAGCAA+AGG 0.541375 5_3:+17493296 Msa0802840:CDS
TCAGGTGGTAACATAGGGAC+AGG 0.544013 5_3:-17493085 None:intergenic
TCATCTGAACAAGGTGTCAC+AGG 0.545128 5_3:+17495375 Msa0802840:CDS
AGCCTTAATATGACCACTTG+TGG 0.546867 5_3:+17494610 Msa0802840:CDS
ATTCTTGTCCCAAATACTGC+AGG 0.549607 5_3:+17494131 Msa0802840:CDS
AAGGAGTGCACACTACTTGG+AGG 0.551266 5_3:-17495628 None:intergenic
ACTTACATTTATGCGAAGAA+GGG 0.551867 5_3:-17495070 None:intergenic
TGGGAACTCATTAAATGAAG+TGG 0.552199 5_3:+17495008 Msa0802840:CDS
AAGGTTCAGGTGGTAACATA+GGG 0.552742 5_3:-17493090 None:intergenic
TTTGGGACTGAAACCACGCC+AGG 0.553427 5_3:+17491170 Msa0802840:CDS
TGAGAACTATAGGCTACAAT+CGG 0.553444 5_3:+17491947 Msa0802840:CDS
TAACTATGTGTATAGTGGAA+TGG 0.553607 5_3:+17494352 Msa0802840:CDS
GGCATTGGATCGAAGTGCCT+CGG 0.554413 5_3:-17493043 None:intergenic
TTTCCTAGTTGTGATTCTAA+CGG 0.554507 5_3:-17494674 None:intergenic
CCATAATCCAAAAGAGAGGA+AGG 0.554624 5_3:-17495671 None:intergenic
ACGAAGGAGATCAAAGACTT+TGG 0.555409 5_3:-17494770 None:intergenic
GAAGAAGAAGGAATATTGAG+AGG 0.555846 5_3:+17490637 Msa0802840:CDS
TTTGCAGAGGCAATGTGAAA+GGG 0.557444 5_3:+17494403 Msa0802840:CDS
AGCACCTTCAATTTGATGCA+GGG 0.561062 5_3:-17495541 None:intergenic
TCAGCATTTGATGAAACCAT+TGG 0.561093 5_3:-17495348 None:intergenic
ATTAGTTAGTCAGGGTGGTG+TGG 0.561524 5_3:+17496177 Msa0802840:three_prime_UTR
TGCATTGCACTTCTTCCACA+AGG 0.562490 5_3:+17495312 Msa0802840:CDS
ACAAGCAAGGACCATGAAGA+AGG 0.565680 5_3:-17490094 None:intergenic
AGGGTTCATGATAGTGCCAA+TGG 0.566530 5_3:+17495332 Msa0802840:CDS
TATGGTTAGAGAAATTCGTA+TGG 0.567633 5_3:+17495703 Msa0802840:three_prime_UTR
GTGCTTCTGGCCATGCAAGT+GGG 0.568255 5_3:+17493591 Msa0802840:CDS
AGACAGTGTGATGAAATGAA+AGG 0.570581 5_3:-17489988 None:intergenic
GAAAGGTTAAGCTTTGCAGA+AGG 0.572294 5_3:-17495483 None:intergenic
AGGAAAGGGTTGAAAAGGCA+TGG 0.572972 5_3:-17490502 None:intergenic
CAAGTAATGTCAACAATGGG+AGG 0.574313 5_3:+17490408 Msa0802840:CDS
AGTGCCAATGCTGCTAACTC+AGG 0.574318 5_3:+17495417 Msa0802840:CDS
ACAGGAATCATTTCTGTGCA+TGG 0.575428 5_3:-17493067 None:intergenic
CGAGAATCACTCCACTGGGT+TGG 0.576021 5_3:-17494711 None:intergenic
AACCAGAACTTAACCTGGCG+TGG 0.579376 5_3:-17491183 None:intergenic
GTCTCTCTGGTGGATACCAA+TGG 0.579467 5_3:-17494016 None:intergenic
GAAGTGGCTCATATTGCTAA+CGG 0.583975 5_3:+17495024 Msa0802840:CDS
GAGGAGGGTAGAGGGACCGA+GGG 0.584418 5_3:+17496078 Msa0802840:three_prime_UTR
ATTACCATGGAAGAAGGAAA+GGG 0.585294 5_3:-17490516 None:intergenic
GCTGAAGAGTCCCACTTGCA+TGG 0.585312 5_3:-17493601 None:intergenic
GAATCGTCGAACTCAGATGA+AGG 0.585722 5_3:+17491209 Msa0802840:CDS
TTGTCAAGTAATGTCAACAA+TGG 0.587069 5_3:+17490404 Msa0802840:CDS
ATATCAGGTCCCATTATACA+TGG 0.589693 5_3:-17492005 None:intergenic
GGTGGTGCCATTGTTTGGAG+TGG 0.590059 5_3:-17492974 None:intergenic
CCATGATTGTCCACCACAAG+TGG 0.590603 5_3:-17494623 None:intergenic
TGGTATTTATGTATGTGAGG+AGG 0.591360 5_3:+17496062 Msa0802840:three_prime_UTR
TGTCAGCAAAATGCCGAGGA+AGG 0.592338 5_3:+17494055 Msa0802840:CDS
ATTATGTATGCAGGTAACAT+GGG 0.592654 5_3:+17494283 Msa0802840:intron
TGAAAGGGTTGCAAGCCTCA+TGG 0.593187 5_3:+17494418 Msa0802840:CDS
ATGTATGTGAGGAGGGTAGA+GGG 0.593585 5_3:+17496070 Msa0802840:three_prime_UTR
AGTAGTAAGGGAAGGAACAA+GGG 0.595894 5_3:+17495900 Msa0802840:three_prime_UTR
AAATGCCGAGGAAGGAACCT+GGG 0.596467 5_3:+17494063 Msa0802840:CDS
ATCTGTGGCGTTCGTCACGA+AGG 0.596909 5_3:-17494786 None:intergenic
ATGTCTAAGTCCAGTGATGG+TGG 0.600221 5_3:-17493010 None:intergenic
AAATGCCCGGTTAAAAGAAG+AGG 0.603680 5_3:+17492058 Msa0802840:CDS
ATTGAAGGTGCTCTTTGTGG+CGG 0.608550 5_3:+17495552 Msa0802840:CDS
TTGGCACTAGTAGTAGATGA+TGG 0.610277 5_3:-17495402 None:intergenic
TTTGATGCAGGGTATTGCAA+AGG 0.610933 5_3:-17495530 None:intergenic
TGATTGCTGTGACACTTGAA+AGG 0.612049 5_3:-17495500 None:intergenic
CTTAATATGACCACTTGTGG+TGG 0.613209 5_3:+17494613 Msa0802840:CDS
GCCTCATTAGTTAGTCAGGG+TGG 0.614874 5_3:+17496172 Msa0802840:three_prime_UTR
AAGTAATGTCAACAATGGGA+GGG 0.615730 5_3:+17490409 Msa0802840:CDS
TCGTAGCGGTGAGAATGATA+GGG 0.616366 5_3:+17493234 Msa0802840:CDS
TTTGTATGGGAGTTAGAGTG+TGG 0.616512 5_3:+17496022 Msa0802840:three_prime_UTR
TGGCATTTGGTGCACAACGT+TGG 0.617325 5_3:+17494372 Msa0802840:CDS
GGCACTATCATGAACCCTTG+TGG 0.620159 5_3:-17495327 None:intergenic
AGGAGTGCACACTACTTGGA+GGG 0.620960 5_3:-17495627 None:intergenic
CATGCCAAATGGCTATTCAA+GGG 0.621111 5_3:+17494180 Msa0802840:CDS
TTAAGCAAAGGAATGAGTTG+AGG 0.624294 5_3:+17493308 Msa0802840:CDS
GTTAAGATGTGTCAAATGAA+CGG 0.624392 5_3:+17493199 Msa0802840:CDS
GTGATTCAAGACATGCCAAA+TGG 0.625125 5_3:+17494169 Msa0802840:CDS
AAGAAAATGAGTCTCTCTGG+TGG 0.626409 5_3:-17494026 None:intergenic
TTGAAGCTAGAGTTATGGAT+CGG 0.627481 5_3:-17490468 None:intergenic
TGGAAAAGTTGAATTAGCAA+CGG 0.627770 5_3:+17495723 Msa0802840:three_prime_UTR
ACCACCCTGACTAACTAATG+AGG 0.628387 5_3:-17496173 None:intergenic
CGACCTTACTAGAAAACCAA+AGG 0.628582 5_3:-17496124 None:intergenic
TCTGAAACCAGAACTTAACC+TGG 0.629926 5_3:-17491188 None:intergenic
TGAAAATGTGAAGGTTCAGG+TGG 0.630308 5_3:-17493100 None:intergenic
TGGTCGTCCACTCCAAACAA+TGG 0.632170 5_3:+17492967 Msa0802840:CDS
GCGGCGAGAATCACTCCACT+GGG 0.633627 5_3:-17494715 None:intergenic
ACAATTTCAATGACTGGACA+AGG 0.633641 5_3:-17495647 None:intergenic
CTTGTCCCAAATACTGCAGG+AGG 0.633782 5_3:+17494134 Msa0802840:CDS
CCACCCTCTTGAAAATGTGA+AGG 0.635356 5_3:-17493109 None:intergenic
TGTATAACATCAAGATACAC+TGG 0.638243 5_3:+17492947 Msa0802840:CDS
CTGATATGTTTCTAGCCATG+AGG 0.641439 5_3:-17494433 None:intergenic
AGAAACATATCAGATCTTGG+AGG 0.641979 5_3:+17494443 Msa0802840:CDS
GCGGGGAATTTAAGTATGTG+AGG 0.645716 5_3:+17495956 Msa0802840:three_prime_UTR
TCGGTCCAACTAGCTATGAG+TGG 0.646383 5_3:+17495276 Msa0802840:CDS
GGAAGAAGTGCAATGCATGA+AGG 0.647602 5_3:-17495306 None:intergenic
TTAACTAGAGTAGTAAGGGA+AGG 0.648162 5_3:+17495892 Msa0802840:three_prime_UTR
ACACCGTTAGAATCACAACT+AGG 0.649395 5_3:+17494671 Msa0802840:CDS
AAATCCATAATCCAAAAGAG+AGG 0.652616 5_3:-17495675 None:intergenic
ATGGCCTCATTAGTTAGTCA+GGG 0.654609 5_3:+17496169 Msa0802840:three_prime_UTR
AAGCCAAGTGGTTGAAACTG+CGG 0.657898 5_3:-17494734 None:intergenic
GCATTGCACTTCTTCCACAA+GGG 0.658072 5_3:+17495313 Msa0802840:CDS
ATCAACAGGAAAATCAACAA+TGG 0.660991 5_3:-17494086 None:intergenic
ACTGAGCCTGGCCAACCCAG+TGG 0.663353 5_3:+17494700 Msa0802840:CDS
GAAGAGATAATGGATCAAAG+TGG 0.668091 5_3:+17490664 Msa0802840:CDS
TAGACATGAACATTTATCCG+AGG 0.669126 5_3:+17493026 Msa0802840:CDS
GTCTTGAATCACACAGCCAG+AGG 0.672117 5_3:-17494158 None:intergenic
GCTGATACATCATCTGAACA+AGG 0.673597 5_3:+17495366 Msa0802840:CDS
TTCATGTCTAAGTCCAGTGA+TGG 0.677862 5_3:-17493013 None:intergenic
AAATGGTATTTATGTATGTG+AGG 0.679346 5_3:+17496059 Msa0802840:three_prime_UTR
AGTGATGGTGGCATAAGAGA+TGG 0.687053 5_3:-17492998 None:intergenic
ACAGTGTGATGAAATGAAAG+GGG 0.689420 5_3:-17489986 None:intergenic
GGAATCATTTCTGTGCATGG+TGG 0.700338 5_3:-17493064 None:intergenic
GATGGTGGCATAAGAGATGG+TGG 0.704606 5_3:-17492995 None:intergenic
TCTGTGGTACCTGAGATCTG+TGG 0.717292 5_3:-17494801 None:intergenic
GGTGGCATAAGAGATGGTGG+TGG 0.719463 5_3:-17492992 None:intergenic
GGACCGCTTTGGATTCGTAG+CGG 0.720865 5_3:+17493220 Msa0802840:CDS
GTATTGTCAGCAAAATGCCG+AGG 0.721851 5_3:+17494051 Msa0802840:CDS
ATGAGGATAAGGAAGCCAAG+TGG 0.750424 5_3:-17494746 None:intergenic
TCACCGCTACGAATCCAAAG+CGG 0.768262 5_3:-17493223 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAAAAAAATAGTTT+AGG - chr5_3:17490133-17490152 None:intergenic 10.0%
!!! TAATTTTTCATATAATATCA+TGG - chr5_3:17490919-17490938 None:intergenic 10.0%
!! AAAACCATTAAAAATAATTT+GGG + chr5_3:17491698-17491717 Msa0802840:intron 10.0%
!!! TAATTTTTGTTAAAAACATA+TGG - chr5_3:17492387-17492406 None:intergenic 10.0%
!!! AGAAAAATATTTTATAGAAT+CGG + chr5_3:17494477-17494496 Msa0802840:intron 10.0%
!!! TTATATTTGACATTTTATTT+TGG + chr5_3:17494515-17494534 Msa0802840:intron 10.0%
!! TAAAATAAAATCAAGAATTT+AGG - chr5_3:17494963-17494982 None:intergenic 10.0%
!!! ATTTTATTTTATTTTACAGA+TGG + chr5_3:17494972-17494991 Msa0802840:intron 10.0%
!!! ATTTTTTTTTCTTTTCACTT+TGG + chr5_3:17490138-17490157 Msa0802840:intron 15.0%
!!! AGAATGTTTTTTTTATTGTT+AGG + chr5_3:17490253-17490272 Msa0802840:intron 15.0%
!! AAATAGTAAAAATATTACCA+TGG - chr5_3:17490532-17490551 None:intergenic 15.0%
!!! TAAACCCTAAATATATTTTA+AGG + chr5_3:17491040-17491059 Msa0802840:intron 15.0%
!!! TTAGCCTTAAAATATATTTA+GGG - chr5_3:17491047-17491066 None:intergenic 15.0%
!!! TTTAGCCTTAAAATATATTT+AGG - chr5_3:17491048-17491067 None:intergenic 15.0%
!!! TTTTCAATTTCATATAGTTA+TGG + chr5_3:17491525-17491544 Msa0802840:intron 15.0%
!! CAAAACCATTAAAAATAATT+TGG + chr5_3:17491697-17491716 Msa0802840:intron 15.0%
!! AAACCATTAAAAATAATTTG+GGG + chr5_3:17491699-17491718 Msa0802840:intron 15.0%
!!! TTCTAAGAATAAATAGTTAA+TGG - chr5_3:17491733-17491752 None:intergenic 15.0%
!! AATAGAAATGTATTATTGTT+TGG + chr5_3:17491751-17491770 Msa0802840:intron 15.0%
!!! TTTTGATTGTTTACTAATTT+TGG + chr5_3:17491829-17491848 Msa0802840:intron 15.0%
!!! TTTGATTGTTTACTAATTTT+GGG + chr5_3:17491830-17491849 Msa0802840:intron 15.0%
!!! ATTTGTGTTTTTATTTGTTA+TGG - chr5_3:17492361-17492380 None:intergenic 15.0%
!!! TTTTAGAGGTATAAAAAATA+CGG - chr5_3:17492480-17492499 None:intergenic 15.0%
!! TTATTATTTGCATATACTTT+AGG + chr5_3:17492679-17492698 Msa0802840:intron 15.0%
!!! TTTTTTTTTGACAAAACTTT+AGG + chr5_3:17492715-17492734 Msa0802840:intron 15.0%
!!! TTCTTTTATTATTAGAGATT+AGG - chr5_3:17492866-17492885 None:intergenic 15.0%
!! AAAAAATGCATGATTTAATT+TGG + chr5_3:17492889-17492908 Msa0802840:intron 15.0%
!! AGAATGTAATAAAAATATCT+AGG - chr5_3:17494218-17494237 None:intergenic 15.0%
!!! TAATTTTAAATTATGTATGC+AGG + chr5_3:17494274-17494293 Msa0802840:intron 15.0%
!!! GAAAAATATTTTATAGAATC+GGG + chr5_3:17494478-17494497 Msa0802840:intron 15.0%
!! GAAAATAATTAAATTAGCAA+TGG - chr5_3:17495844-17495863 None:intergenic 15.0%
!!! ATTTAATTATTTTCCAACTA+TGG + chr5_3:17495850-17495869 Msa0802840:three_prime_UTR 15.0%
!!! TTTAATTATTTTCCAACTAT+GGG + chr5_3:17495851-17495870 Msa0802840:three_prime_UTR 15.0%
!!! TATTTTTTGATGTTAACATC+AGG + chr5_3:17490296-17490315 Msa0802840:intron 20.0%
!!! TGTAACTTTTTTCTTCATTT+TGG + chr5_3:17490594-17490613 Msa0802840:intron 20.0%
!! AAAAATTATGACCTAACATA+TGG + chr5_3:17490931-17490950 Msa0802840:intron 20.0%
!! AAAGAAGAATAAACGTTTAA+TGG - chr5_3:17491284-17491303 None:intergenic 20.0%
!! TTTCATATAGTTATGGTTAT+TGG + chr5_3:17491532-17491551 Msa0802840:intron 20.0%
!! TATTATTGTTTGGTACTATA+CGG + chr5_3:17491761-17491780 Msa0802840:intron 20.0%
!!! GTTGTTGTTGTTATTATTAT+AGG + chr5_3:17491866-17491885 Msa0802840:intron 20.0%
!!! AATATTTTATGTCCTAATTG+TGG + chr5_3:17491978-17491997 Msa0802840:CDS 20.0%
!!! ATTTTAATTGAAAATCATGC+TGG + chr5_3:17492127-17492146 Msa0802840:intron 20.0%
!! TAAAGTGAAGAATTTACATA+CGG - chr5_3:17492244-17492263 None:intergenic 20.0%
!!! AATTCTTCACTTTAAGATTT+TGG + chr5_3:17492250-17492269 Msa0802840:intron 20.0%
!!! TTAACTAACAGATATTTTAG+AGG - chr5_3:17492494-17492513 None:intergenic 20.0%
!!! AGACAAATTTTCATAAATTC+TGG + chr5_3:17492649-17492668 Msa0802840:intron 20.0%
!!! TTTTTGCTATAAAACATACA+AGG - chr5_3:17493510-17493529 None:intergenic 20.0%
!!! TGTATGTTTTATAGCAAAAA+TGG + chr5_3:17493510-17493529 Msa0802840:intron 20.0%
!! GAACTATCATTGTTATATAT+AGG - chr5_3:17493737-17493756 None:intergenic 20.0%
!! GAATTATTCTTCAAAACATT+AGG + chr5_3:17494247-17494266 Msa0802840:intron 20.0%
!! CATAGTTACTAAATATTTGA+TGG - chr5_3:17494340-17494359 None:intergenic 20.0%
!!! GAGTGTTTTTAAATAAAAGA+TGG + chr5_3:17495926-17495945 Msa0802840:three_prime_UTR 20.0%
! AAAAATATTACCATGGAAGA+AGG - chr5_3:17490525-17490544 None:intergenic 25.0%
!!! ATAACCAAGGTTTTAAATTG+CGG + chr5_3:17490876-17490895 Msa0802840:intron 25.0%
!! AATTATATGCAGTTTGTTCA+AGG + chr5_3:17491101-17491120 Msa0802840:intron 25.0%
! AACAAACATCTATTACTACT+AGG + chr5_3:17491476-17491495 Msa0802840:intron 25.0%
! TGCTATATATCATCATTACT+AGG + chr5_3:17491646-17491665 Msa0802840:intron 25.0%
! GCTATATATCATCATTACTA+GGG + chr5_3:17491647-17491666 Msa0802840:intron 25.0%
!!! GTACCCCAAATTATTTTTAA+TGG - chr5_3:17491705-17491724 None:intergenic 25.0%
! CTATACGGTTGATTAATTAT+TGG + chr5_3:17491776-17491795 Msa0802840:intron 25.0%
! GATGTGAAAACAAATACTTA+TGG - chr5_3:17492190-17492209 None:intergenic 25.0%
!! TATATTTCTAATAACCCTCA+TGG + chr5_3:17492523-17492542 Msa0802840:intron 25.0%
! TTATTTGCATATACTTTAGG+TGG + chr5_3:17492682-17492701 Msa0802840:intron 25.0%
!!! TTTTTTGACAAAACTTTAGG+TGG + chr5_3:17492718-17492737 Msa0802840:intron 25.0%
!! TGAAATAAATTGATTAGCCA+CGG + chr5_3:17492824-17492843 Msa0802840:intron 25.0%
!! TGTTTTATAGCAAAAATGGA+TGG + chr5_3:17493514-17493533 Msa0802840:intron 25.0%
! AACAATGATAGTTCAGATTA+AGG + chr5_3:17493743-17493762 Msa0802840:intron 25.0%
! CATTGACACACATTATATAT+TGG + chr5_3:17493812-17493831 Msa0802840:intron 25.0%
!!! AAGAATTTTGAAAGTTTTGG+TGG - chr5_3:17494117-17494136 None:intergenic 25.0%
!!! GACAAGAATTTTGAAAGTTT+TGG - chr5_3:17494120-17494139 None:intergenic 25.0%
!! TTACTAAATATTTGATGGAC+TGG - chr5_3:17494335-17494354 None:intergenic 25.0%
! TTTAGTAACTATGTGTATAG+TGG + chr5_3:17494347-17494366 Msa0802840:CDS 25.0%
!!! GGATTATGGATTTTTAGTTA+TGG + chr5_3:17495685-17495704 Msa0802840:three_prime_UTR 25.0%
! GTAATTAACTAGAGTAGTAA+GGG + chr5_3:17495888-17495907 Msa0802840:three_prime_UTR 25.0%
!!! AATAAAAGATGGATTTTGAG+CGG + chr5_3:17495937-17495956 Msa0802840:three_prime_UTR 25.0%
!! TAATTGTTGTGTGTTTTGTA+TGG + chr5_3:17496008-17496027 Msa0802840:three_prime_UTR 25.0%
!! AATTGTTGTGTGTTTTGTAT+GGG + chr5_3:17496009-17496028 Msa0802840:three_prime_UTR 25.0%
! TGGTAATTAACATTGTGAAA+TGG + chr5_3:17496042-17496061 Msa0802840:three_prime_UTR 25.0%
! AAATGGTATTTATGTATGTG+AGG + chr5_3:17496059-17496078 Msa0802840:three_prime_UTR 25.0%
!!! GGTTTTGAAAATGAAGTGAA+AGG - chr5_3:17490064-17490083 None:intergenic 30.0%
!! TTTTAGAGAGTATACAAGCA+AGG - chr5_3:17490110-17490129 None:intergenic 30.0%
TATTGTTAGGATTCTGATAC+AGG + chr5_3:17490266-17490285 Msa0802840:intron 30.0%
TTTGATGTTAACATCAGGTT+TGG + chr5_3:17490301-17490320 Msa0802840:intron 30.0%
GTGTGGTTAAGAAAAATGTA+TGG + chr5_3:17490378-17490397 Msa0802840:exon 30.0%
TTGTCAAGTAATGTCAACAA+TGG + chr5_3:17490404-17490423 Msa0802840:CDS 30.0%
TGTCAAGTAATGTCAACAAT+GGG + chr5_3:17490405-17490424 Msa0802840:CDS 30.0%
TTTGAACAGAAAGAAGAAGA+AGG + chr5_3:17490625-17490644 Msa0802840:intron 30.0%
AATTCATACAGTGATAACCA+AGG + chr5_3:17490863-17490882 Msa0802840:intron 30.0%
! GTTGACCTTGCTTTAAATAT+GGG + chr5_3:17490953-17490972 Msa0802840:intron 30.0%
! TCAGTCTTTGTTTATCATCT+GGG - chr5_3:17491137-17491156 None:intergenic 30.0%
! TTCAGTCTTTGTTTATCATC+TGG - chr5_3:17491138-17491157 None:intergenic 30.0%
!!! AGAAAACGCGTTTTTTCATT+GGG - chr5_3:17491423-17491442 None:intergenic 30.0%
!!! AAGAAAACGCGTTTTTTCAT+TGG - chr5_3:17491424-17491443 None:intergenic 30.0%
! TGAAAAAACGCGTTTTCTTT+TGG + chr5_3:17491425-17491444 Msa0802840:intron 30.0%
GGTTAAATGCGTTACATTAA+TGG - chr5_3:17491585-17491604 None:intergenic 30.0%
CAATAAATATGAGTAGCGTT+TGG - chr5_3:17491628-17491647 None:intergenic 30.0%
GTTTGAAGAATGAGAACTAT+AGG + chr5_3:17491937-17491956 Msa0802840:CDS 30.0%
! ATTTTATGTCCTAATTGTGG+TGG + chr5_3:17491981-17492000 Msa0802840:CDS 30.0%
! TTTTATGTCCTAATTGTGGT+GGG + chr5_3:17491982-17492001 Msa0802840:CDS 30.0%
! ATATACCTCTTCTTTTAACC+GGG - chr5_3:17492066-17492085 None:intergenic 30.0%
! GATATACCTCTTCTTTTAAC+CGG - chr5_3:17492067-17492086 None:intergenic 30.0%
! TGAATGAATTTTCACATAGC+TGG - chr5_3:17492608-17492627 None:intergenic 30.0%
GTGGCTAATCAATTTATTTC+AGG - chr5_3:17492825-17492844 None:intergenic 30.0%
! GAAATAAATTGATTAGCCAC+GGG + chr5_3:17492825-17492844 Msa0802840:intron 30.0%
TGTATAACATCAAGATACAC+TGG + chr5_3:17492947-17492966 Msa0802840:CDS 30.0%
GTTAAGATGTGTCAAATGAA+CGG + chr5_3:17493199-17493218 Msa0802840:CDS 30.0%
!! TTAATTTTGATGAGCATGCT+AGG + chr5_3:17493263-17493282 Msa0802840:CDS 30.0%
!! TAATTTTGATGAGCATGCTA+GGG + chr5_3:17493264-17493283 Msa0802840:CDS 30.0%
TTCCTTTGCTTAAGATTCAA+AGG - chr5_3:17493301-17493320 None:intergenic 30.0%
ACTGTTCAAATTATAGCTTC+AGG + chr5_3:17493569-17493588 Msa0802840:CDS 30.0%
TAGCAACTAATAAGTGAAAC+TGG - chr5_3:17493711-17493730 None:intergenic 30.0%
ATCAACAGGAAAATCAACAA+TGG - chr5_3:17494089-17494108 None:intergenic 30.0%
AATTATGTATGCAGGTAACA+TGG + chr5_3:17494282-17494301 Msa0802840:intron 30.0%
ATTATGTATGCAGGTAACAT+GGG + chr5_3:17494283-17494302 Msa0802840:intron 30.0%
! TAACTATGTGTATAGTGGAA+TGG + chr5_3:17494352-17494371 Msa0802840:CDS 30.0%
GCTTGATGAAATTAGCAAAT+AGG + chr5_3:17494572-17494591 Msa0802840:CDS 30.0%
TTTCCTAGTTGTGATTCTAA+CGG - chr5_3:17494677-17494696 None:intergenic 30.0%
TCACCATTCTTAAAATCACA+GGG + chr5_3:17494836-17494855 Msa0802840:intron 30.0%
!! ATTCCCTGTGATTTTAAGAA+TGG - chr5_3:17494842-17494861 None:intergenic 30.0%
GAATTGTAATCAAATGCAAC+CGG + chr5_3:17494858-17494877 Msa0802840:intron 30.0%
ACTTACATTTATGCGAAGAA+GGG - chr5_3:17495073-17495092 None:intergenic 30.0%
AACTTACATTTATGCGAAGA+AGG - chr5_3:17495074-17495093 None:intergenic 30.0%
! TTAAATTTGCTTACACATGC+AGG + chr5_3:17495155-17495174 Msa0802840:intron 30.0%
AAATCCATAATCCAAAAGAG+AGG - chr5_3:17495678-17495697 None:intergenic 30.0%
TATGGTTAGAGAAATTCGTA+TGG + chr5_3:17495703-17495722 Msa0802840:three_prime_UTR 30.0%
TGGAAAAGTTGAATTAGCAA+CGG + chr5_3:17495723-17495742 Msa0802840:three_prime_UTR 30.0%
AGAATAGTGACAAGTGAATT+AGG + chr5_3:17495789-17495808 Msa0802840:three_prime_UTR 30.0%
GGTAATTAACTAGAGTAGTA+AGG + chr5_3:17495887-17495906 Msa0802840:three_prime_UTR 30.0%
!! ATAAAAGATGGATTTTGAGC+GGG + chr5_3:17495938-17495957 Msa0802840:three_prime_UTR 30.0%
TTTAAGTATGTGAGGTGTAT+TGG + chr5_3:17495964-17495983 Msa0802840:three_prime_UTR 30.0%
!! AGAAAACCAAAGGTATTATC+TGG - chr5_3:17496117-17496136 None:intergenic 30.0%
!!! ATACCTTTGGTTTTCTAGTA+AGG + chr5_3:17496121-17496140 Msa0802840:three_prime_UTR 30.0%
ACAGTGTGATGAAATGAAAG+GGG - chr5_3:17489989-17490008 None:intergenic 35.0%
GACAGTGTGATGAAATGAAA+GGG - chr5_3:17489990-17490009 None:intergenic 35.0%
AGACAGTGTGATGAAATGAA+AGG - chr5_3:17489991-17490010 None:intergenic 35.0%
GTGTAGAAGAATCTATTCAG+AGG - chr5_3:17490191-17490210 None:intergenic 35.0%
GTAAAACAAAGATTCCTGAG+AGG - chr5_3:17490213-17490232 None:intergenic 35.0%
AAGCACAGTAAAAAACAGTG+TGG + chr5_3:17490361-17490380 Msa0802840:five_prime_UTR 35.0%
AAGTAATGTCAACAATGGGA+GGG + chr5_3:17490409-17490428 Msa0802840:CDS 35.0%
TTGAAGCTAGAGTTATGGAT+CGG - chr5_3:17490471-17490490 None:intergenic 35.0%
TGAAGTTGAAGCTAGAGTTA+TGG - chr5_3:17490476-17490495 None:intergenic 35.0%
ATTACCATGGAAGAAGGAAA+GGG - chr5_3:17490519-17490538 None:intergenic 35.0%
TATTACCATGGAAGAAGGAA+AGG - chr5_3:17490520-17490539 None:intergenic 35.0%
GAAGAAGAAGGAATATTGAG+AGG + chr5_3:17490637-17490656 Msa0802840:CDS 35.0%
GAGAGGTAAAGAAGAGATAA+TGG + chr5_3:17490654-17490673 Msa0802840:CDS 35.0%
!! GAAGAGATAATGGATCAAAG+TGG + chr5_3:17490664-17490683 Msa0802840:CDS 35.0%
!! ATAATGGATCAAAGTGGTTC+AGG + chr5_3:17490670-17490689 Msa0802840:CDS 35.0%
! GAACAAGTTGAAGATAAGTC+AGG + chr5_3:17490697-17490716 Msa0802840:CDS 35.0%
!!! AAGGTTTTAAATTGCGGTTG+CGG + chr5_3:17490882-17490901 Msa0802840:intron 35.0%
! GGTTGACCTTGCTTTAAATA+TGG + chr5_3:17490952-17490971 Msa0802840:intron 35.0%
ACTGAAACTAAGCCATGATT+TGG + chr5_3:17491152-17491171 Msa0802840:CDS 35.0%
CTGAAACTAAGCCATGATTT+GGG + chr5_3:17491153-17491172 Msa0802840:CDS 35.0%
TCTCACATTCATTTCGTCAA+AGG - chr5_3:17491321-17491340 None:intergenic 35.0%
AAACCCTAAACTGTTGTACA+AGG + chr5_3:17491352-17491371 Msa0802840:intron 35.0%
AGACCTTGTACAACAGTTTA+GGG - chr5_3:17491358-17491377 None:intergenic 35.0%
AAGACCTTGTACAACAGTTT+AGG - chr5_3:17491359-17491378 None:intergenic 35.0%
GGAATACAGACTGTATATGA+TGG - chr5_3:17491564-17491583 None:intergenic 35.0%
TACTAGGGTTACACTTCAAA+CGG + chr5_3:17491662-17491681 Msa0802840:intron 35.0%
TGAGAACTATAGGCTACAAT+CGG + chr5_3:17491947-17491966 Msa0802840:CDS 35.0%
ATATCAGGTCCCATTATACA+TGG - chr5_3:17492008-17492027 None:intergenic 35.0%
! ATGTATAATGGGACCTGATA+TGG + chr5_3:17492007-17492026 Msa0802840:CDS 35.0%
! TGTATAATGGGACCTGATAT+GGG + chr5_3:17492008-17492027 Msa0802840:CDS 35.0%
! AACTTCGATTTGAAAATGCC+CGG + chr5_3:17492045-17492064 Msa0802840:CDS 35.0%
AGTCTTCTGAGTACTACATT+TGG + chr5_3:17492446-17492465 Msa0802840:intron 35.0%
TTTCTAATAACCCTCATGGA+CGG + chr5_3:17492527-17492546 Msa0802840:intron 35.0%
TGGACGGTAATTTAGACAAT+AGG + chr5_3:17492543-17492562 Msa0802840:intron 35.0%
TAGACATGAACATTTATCCG+AGG + chr5_3:17493026-17493045 Msa0802840:CDS 35.0%
TCTTGAAAATGTGAAGGTTC+AGG - chr5_3:17493106-17493125 None:intergenic 35.0%
!! TGAACCTTCACATTTTCAAG+AGG + chr5_3:17493105-17493124 Msa0802840:CDS 35.0%
!! GAACCTTCACATTTTCAAGA+GGG + chr5_3:17493106-17493125 Msa0802840:CDS 35.0%
! AGATGAGAAATCACTTGCTA+TGG + chr5_3:17493147-17493166 Msa0802840:CDS 35.0%
TTAAGCAAAGGAATGAGTTG+AGG + chr5_3:17493308-17493327 Msa0802840:CDS 35.0%
TGTTTCCAACTATTGTTGCT+AGG + chr5_3:17493540-17493559 Msa0802840:CDS 35.0%
GTTTCCAACTATTGTTGCTA+GGG + chr5_3:17493541-17493560 Msa0802840:CDS 35.0%
TGATAGTTCAGATTAAGGAC+AGG + chr5_3:17493748-17493767 Msa0802840:intron 35.0%
GATAGTTCAGATTAAGGACA+GGG + chr5_3:17493749-17493768 Msa0802840:intron 35.0%
ATAGTTCAGATTAAGGACAG+GGG + chr5_3:17493750-17493769 Msa0802840:intron 35.0%
ATTCCAAGTTCTTTCTCCAT+TGG + chr5_3:17494000-17494019 Msa0802840:CDS 35.0%
ATACCAATGGAGAAAGAACT+TGG - chr5_3:17494006-17494025 None:intergenic 35.0%
GCTAGAAACATATCAGATCT+TGG + chr5_3:17494440-17494459 Msa0802840:CDS 35.0%
AGAAACATATCAGATCTTGG+AGG + chr5_3:17494443-17494462 Msa0802840:CDS 35.0%
! ACAATCATGGACTGCTATAT+CGG + chr5_3:17494636-17494655 Msa0802840:CDS 35.0%
AAGACTTTGGTATGAGGATA+AGG - chr5_3:17494760-17494779 None:intergenic 35.0%
AGATCAAAGACTTTGGTATG+AGG - chr5_3:17494766-17494785 None:intergenic 35.0%
!! CTGTGATTTTAAGAATGGTG+AGG - chr5_3:17494837-17494856 None:intergenic 35.0%
CTCACCATTCTTAAAATCAC+AGG + chr5_3:17494835-17494854 Msa0802840:intron 35.0%
TCAAGATATTGAACTCACAC+CGG - chr5_3:17494880-17494899 None:intergenic 35.0%
AGTTCAATATCTTGATGTCG+CGG + chr5_3:17494885-17494904 Msa0802840:intron 35.0%
AGATGGATGCACTTTCTAAT+GGG + chr5_3:17494989-17495008 Msa0802840:intron 35.0%
TGGGAACTCATTAAATGAAG+TGG + chr5_3:17495008-17495027 Msa0802840:CDS 35.0%
TCAGCATTTGATGAAACCAT+TGG - chr5_3:17495351-17495370 None:intergenic 35.0%
! TCAGGTTGTCTTCTTATCAT+GGG + chr5_3:17495435-17495454 Msa0802840:CDS 35.0%
AATACCCTGCATCAAATTGA+AGG + chr5_3:17495537-17495556 Msa0802840:CDS 35.0%
ACTAACAGCAATTGCTTTGT+TGG + chr5_3:17495576-17495595 Msa0802840:CDS 35.0%
! CTAACAGCAATTGCTTTGTT+GGG + chr5_3:17495577-17495596 Msa0802840:CDS 35.0%
ACAATTTCAATGACTGGACA+AGG - chr5_3:17495650-17495669 None:intergenic 35.0%
GAAGGAACAATTTCAATGAC+TGG - chr5_3:17495656-17495675 None:intergenic 35.0%
! AATTGTTCCTTCCTCTCTTT+TGG + chr5_3:17495664-17495683 Msa0802840:three_prime_UTR 35.0%
ACAATTCATGTTCCCATAGT+TGG - chr5_3:17495866-17495885 None:intergenic 35.0%
ACTATGGGAACATGAATTGT+AGG + chr5_3:17495866-17495885 Msa0802840:three_prime_UTR 35.0%
TTAACTAGAGTAGTAAGGGA+AGG + chr5_3:17495892-17495911 Msa0802840:three_prime_UTR 35.0%
!! TAAAAGATGGATTTTGAGCG+GGG + chr5_3:17495939-17495958 Msa0802840:three_prime_UTR 35.0%
TGGTATTTATGTATGTGAGG+AGG + chr5_3:17496062-17496081 Msa0802840:three_prime_UTR 35.0%
GGTATTTATGTATGTGAGGA+GGG + chr5_3:17496063-17496082 Msa0802840:three_prime_UTR 35.0%
!! CATGAAGAAGGTTCTGAAAC+TGG - chr5_3:17490085-17490104 None:intergenic 40.0%
CAGTTTCAGAACCTTCTTCA+TGG + chr5_3:17490083-17490102 Msa0802840:five_prime_UTR 40.0%
TAGATTCTTCTACACCTCTC+AGG + chr5_3:17490196-17490215 Msa0802840:intron 40.0%
CAAGTAATGTCAACAATGGG+AGG + chr5_3:17490408-17490427 Msa0802840:CDS 40.0%
GAAGAAGGAAAGGGTTGAAA+AGG - chr5_3:17490510-17490529 None:intergenic 40.0%
AGAGATACGCTTCCATTTCT+TGG - chr5_3:17490798-17490817 None:intergenic 40.0%
! GCAACCGCAATTTAAAACCT+TGG - chr5_3:17490883-17490902 None:intergenic 40.0%
AGCAAGGTCAACCATATGTT+AGG - chr5_3:17490945-17490964 None:intergenic 40.0%
! CGAGACCCATATTTAAAGCA+AGG - chr5_3:17490961-17490980 None:intergenic 40.0%
! CTTTGTTTATCATCTGGGTG+TGG - chr5_3:17491132-17491151 None:intergenic 40.0%
! TCTGAAACCAGAACTTAACC+TGG - chr5_3:17491191-17491210 None:intergenic 40.0%
TTAACCTTACCTGTCACATG+TGG + chr5_3:17491599-17491618 Msa0802840:intron 40.0%
ACTAGGGTTACACTTCAAAC+GGG + chr5_3:17491663-17491682 Msa0802840:intron 40.0%
TGATCATCAAAGCCCATATC+AGG - chr5_3:17492023-17492042 None:intergenic 40.0%
AAATGCCCGGTTAAAAGAAG+AGG + chr5_3:17492058-17492077 Msa0802840:CDS 40.0%
GTCTAAATTACCGTCCATGA+GGG - chr5_3:17492540-17492559 None:intergenic 40.0%
TGTCTAAATTACCGTCCATG+AGG - chr5_3:17492541-17492560 None:intergenic 40.0%
!!! GTCGTAGAATTTTTTTCCCG+TGG - chr5_3:17492844-17492863 None:intergenic 40.0%
TTCATGTCTAAGTCCAGTGA+TGG - chr5_3:17493016-17493035 None:intergenic 40.0%
ACAGGAATCATTTCTGTGCA+TGG - chr5_3:17493070-17493089 None:intergenic 40.0%
AAGGTTCAGGTGGTAACATA+GGG - chr5_3:17493093-17493112 None:intergenic 40.0%
TGAAAATGTGAAGGTTCAGG+TGG - chr5_3:17493103-17493122 None:intergenic 40.0%
AGAGGGTGGTCTCTTATTAA+TGG + chr5_3:17493123-17493142 Msa0802840:CDS 40.0%
!! AGCATGCTAGGGTTTTTCAA+TGG + chr5_3:17493275-17493294 Msa0802840:CDS 40.0%
GGCCTTTGAATCTTAAGCAA+AGG + chr5_3:17493296-17493315 Msa0802840:CDS 40.0%
ATTATAGCTTCAGGTGCTTC+TGG + chr5_3:17493578-17493597 Msa0802840:CDS 40.0%
GGTAAGTATCCAACATGTGT+CGG + chr5_3:17493771-17493790 Msa0802840:intron 40.0%
AAGAAAATGAGTCTCTCTGG+TGG - chr5_3:17494029-17494048 None:intergenic 40.0%
! CCAGAGAGACTCATTTTCTT+CGG + chr5_3:17494029-17494048 Msa0802840:CDS 40.0%
! TTTTGGTGGAAGCTATCAAC+AGG - chr5_3:17494103-17494122 None:intergenic 40.0%
ATTCTTGTCCCAAATACTGC+AGG + chr5_3:17494131-17494150 Msa0802840:CDS 40.0%
GTGATTCAAGACATGCCAAA+TGG + chr5_3:17494169-17494188 Msa0802840:CDS 40.0%
ACATGCCAAATGGCTATTCA+AGG + chr5_3:17494179-17494198 Msa0802840:CDS 40.0%
CATGCCAAATGGCTATTCAA+GGG + chr5_3:17494180-17494199 Msa0802840:CDS 40.0%
TGTACCCTTGAATAGCCATT+TGG - chr5_3:17494187-17494206 None:intergenic 40.0%
! GTGTATAGTGGAATGGCATT+TGG + chr5_3:17494359-17494378 Msa0802840:CDS 40.0%
! TTTTGCAGAGGCAATGTGAA+AGG + chr5_3:17494402-17494421 Msa0802840:CDS 40.0%
TTTGCAGAGGCAATGTGAAA+GGG + chr5_3:17494403-17494422 Msa0802840:CDS 40.0%
!! CTGATATGTTTCTAGCCATG+AGG - chr5_3:17494436-17494455 None:intergenic 40.0%
AGCCTTAATATGACCACTTG+TGG + chr5_3:17494610-17494629 Msa0802840:CDS 40.0%
CACCACAAGTGGTCATATTA+AGG - chr5_3:17494615-17494634 None:intergenic 40.0%
CTTAATATGACCACTTGTGG+TGG + chr5_3:17494613-17494632 Msa0802840:CDS 40.0%
ACACCGTTAGAATCACAACT+AGG + chr5_3:17494671-17494690 Msa0802840:CDS 40.0%
ACGAAGGAGATCAAAGACTT+TGG - chr5_3:17494773-17494792 None:intergenic 40.0%
GTGAGGTGATGAATATTCTG+TGG - chr5_3:17494820-17494839 None:intergenic 40.0%
CAGATGGATGCACTTTCTAA+TGG + chr5_3:17494988-17495007 Msa0802840:intron 40.0%
GAAGTGGCTCATATTGCTAA+CGG + chr5_3:17495024-17495043 Msa0802840:CDS 40.0%
TATTGCTAACGGTTCACATC+CGG + chr5_3:17495035-17495054 Msa0802840:CDS 40.0%
GCTGATACATCATCTGAACA+AGG + chr5_3:17495366-17495385 Msa0802840:CDS 40.0%
TTGGCACTAGTAGTAGATGA+TGG - chr5_3:17495405-17495424 None:intergenic 40.0%
! CTCAGGTTGTCTTCTTATCA+TGG + chr5_3:17495434-17495453 Msa0802840:CDS 40.0%
GAAAGGTTAAGCTTTGCAGA+AGG - chr5_3:17495486-17495505 None:intergenic 40.0%
TGATTGCTGTGACACTTGAA+AGG - chr5_3:17495503-17495522 None:intergenic 40.0%
!! TTTGATGCAGGGTATTGCAA+AGG - chr5_3:17495533-17495552 None:intergenic 40.0%
AGCACCTTCAATTTGATGCA+GGG - chr5_3:17495544-17495563 None:intergenic 40.0%
!! CAAATTGAAGGTGCTCTTTG+TGG + chr5_3:17495549-17495568 Msa0802840:CDS 40.0%
CCATAATCCAAAAGAGAGGA+AGG - chr5_3:17495674-17495693 None:intergenic 40.0%
! CCTTCCTCTCTTTTGGATTA+TGG + chr5_3:17495671-17495690 Msa0802840:three_prime_UTR 40.0%
AGTAGTAAGGGAAGGAACAA+GGG + chr5_3:17495900-17495919 Msa0802840:three_prime_UTR 40.0%
TTTGTATGGGAGTTAGAGTG+TGG + chr5_3:17496022-17496041 Msa0802840:three_prime_UTR 40.0%
CGACCTTACTAGAAAACCAA+AGG - chr5_3:17496127-17496146 None:intergenic 40.0%
TCTCGTATGATTCGTGATGA+TGG + chr5_3:17496150-17496169 Msa0802840:three_prime_UTR 40.0%
ATGGCCTCATTAGTTAGTCA+GGG + chr5_3:17496169-17496188 Msa0802840:three_prime_UTR 40.0%
CATCACACTGTCTCTTTGTG+TGG + chr5_3:17489998-17490017 Msa0802840:five_prime_UTR 45.0%
ACAAGCAAGGACCATGAAGA+AGG - chr5_3:17490097-17490116 None:intergenic 45.0%
AGGAAAGGGTTGAAAAGGCA+TGG - chr5_3:17490505-17490524 None:intergenic 45.0%
TCAACCCTTTCCTTCTTCCA+TGG + chr5_3:17490512-17490531 Msa0802840:CDS 45.0%
TGCTCGTCAGATCCAAGAAA+TGG + chr5_3:17490783-17490802 Msa0802840:CDS 45.0%
AATATGGGTCTCGTTGCAGT+TGG + chr5_3:17490968-17490987 Msa0802840:intron 45.0%
GTGGTTTCAGTCCCAAATCA+TGG - chr5_3:17491167-17491186 None:intergenic 45.0%
GAATCGTCGAACTCAGATGA+AGG + chr5_3:17491209-17491228 Msa0802840:CDS 45.0%
ATACATGGCCCACCACAATT+AGG - chr5_3:17491993-17492012 None:intergenic 45.0%
!! TTGTGGTGGGCCATGTATAA+TGG + chr5_3:17491995-17492014 Msa0802840:CDS 45.0%
!! TGTGGTGGGCCATGTATAAT+GGG + chr5_3:17491996-17492015 Msa0802840:CDS 45.0%
!! AGTGATGGTGGCATAAGAGA+TGG - chr5_3:17493001-17493020 None:intergenic 45.0%
ATCTCTTATGCCACCATCAC+TGG + chr5_3:17493000-17493019 Msa0802840:CDS 45.0%
ATGTCTAAGTCCAGTGATGG+TGG - chr5_3:17493013-17493032 None:intergenic 45.0%
ATTTCTGTGCATGGTGGCAT+TGG - chr5_3:17493061-17493080 None:intergenic 45.0%
GGAATCATTTCTGTGCATGG+TGG - chr5_3:17493067-17493086 None:intergenic 45.0%
GAAGGTTCAGGTGGTAACAT+AGG - chr5_3:17493094-17493113 None:intergenic 45.0%
CCACCCTCTTGAAAATGTGA+AGG - chr5_3:17493112-17493131 None:intergenic 45.0%
!! CCTTCACATTTTCAAGAGGG+TGG + chr5_3:17493109-17493128 Msa0802840:CDS 45.0%
GGAACTTGCAGCTTCTTCTA+TGG + chr5_3:17493168-17493187 Msa0802840:CDS 45.0%
TTCGTAGCGGTGAGAATGAT+AGG + chr5_3:17493233-17493252 Msa0802840:CDS 45.0%
TCGTAGCGGTGAGAATGATA+GGG + chr5_3:17493234-17493253 Msa0802840:CDS 45.0%
CTTGCCCTAGCAACAATAGT+TGG - chr5_3:17493548-17493567 None:intergenic 45.0%
TGTCTCATACCGACACATGT+TGG - chr5_3:17493783-17493802 None:intergenic 45.0%
CCGAAGAAAATGAGTCTCTC+TGG - chr5_3:17494032-17494051 None:intergenic 45.0%
GTATTGTCAGCAAAATGCCG+AGG + chr5_3:17494051-17494070 Msa0802840:CDS 45.0%
AGGAAAATCAACAATGGCCC+AGG - chr5_3:17494083-17494102 None:intergenic 45.0%
! TTTGGTGCACAACGTTGGTT+AGG + chr5_3:17494377-17494396 Msa0802840:CDS 45.0%
! GTTGGTTAGGAGTTTTGCAG+AGG + chr5_3:17494390-17494409 Msa0802840:CDS 45.0%
GATTGCAGTGATACCTTCTC+CGG + chr5_3:17494537-17494556 Msa0802840:intron 45.0%
GTGATTCTAACGGTGTCTTC+TGG - chr5_3:17494667-17494686 None:intergenic 45.0%
ACTAGGAAAATCACTGAGCC+TGG + chr5_3:17494688-17494707 Msa0802840:CDS 45.0%
AAGCCAAGTGGTTGAAACTG+CGG - chr5_3:17494737-17494756 None:intergenic 45.0%
ATGAGGATAAGGAAGCCAAG+TGG - chr5_3:17494749-17494768 None:intergenic 45.0%
TGATGTCGCGGTCTAGATTA+AGG + chr5_3:17494897-17494916 Msa0802840:intron 45.0%
ATTGCTAACGGTTCACATCC+GGG + chr5_3:17495036-17495055 Msa0802840:CDS 45.0%
AGAAGGGAAATGCAGTTTCC+CGG - chr5_3:17495057-17495076 None:intergenic 45.0%
GAGAGTTGCACAGATCAATC+TGG + chr5_3:17495219-17495238 Msa0802840:CDS 45.0%
! CACGACAGTCGATGTTGATT+CGG + chr5_3:17495257-17495276 Msa0802840:CDS 45.0%
CTTGTCCACTCATAGCTAGT+TGG - chr5_3:17495284-17495303 None:intergenic 45.0%
! GGAAGAAGTGCAATGCATGA+AGG - chr5_3:17495309-17495328 None:intergenic 45.0%
TGCATTGCACTTCTTCCACA+AGG + chr5_3:17495312-17495331 Msa0802840:CDS 45.0%
GCATTGCACTTCTTCCACAA+GGG + chr5_3:17495313-17495332 Msa0802840:CDS 45.0%
! AGGGTTCATGATAGTGCCAA+TGG + chr5_3:17495332-17495351 Msa0802840:CDS 45.0%
! TCATCTGAACAAGGTGTCAC+AGG + chr5_3:17495375-17495394 Msa0802840:CDS 45.0%
ACAACCTGAGTTAGCAGCAT+TGG - chr5_3:17495424-17495443 None:intergenic 45.0%
GAGCACCTTCAATTTGATGC+AGG - chr5_3:17495545-17495564 None:intergenic 45.0%
!! ATTGAAGGTGCTCTTTGTGG+CGG + chr5_3:17495552-17495571 Msa0802840:CDS 45.0%
GAGTAGTAAGGGAAGGAACA+AGG + chr5_3:17495899-17495918 Msa0802840:three_prime_UTR 45.0%
GCGGGGAATTTAAGTATGTG+AGG + chr5_3:17495956-17495975 Msa0802840:three_prime_UTR 45.0%
TATGTATGTGAGGAGGGTAG+AGG + chr5_3:17496069-17496088 Msa0802840:three_prime_UTR 45.0%
ATGTATGTGAGGAGGGTAGA+GGG + chr5_3:17496070-17496089 Msa0802840:three_prime_UTR 45.0%
AGCGCACCAGATAATACCTT+TGG + chr5_3:17496108-17496127 Msa0802840:three_prime_UTR 45.0%
GATGGCCTCATTAGTTAGTC+AGG + chr5_3:17496168-17496187 Msa0802840:three_prime_UTR 45.0%
ACCACCCTGACTAACTAATG+AGG - chr5_3:17496176-17496195 None:intergenic 45.0%
ATTAGTTAGTCAGGGTGGTG+TGG + chr5_3:17496177-17496196 Msa0802840:three_prime_UTR 45.0%
AACCACGCCAGGTTAAGTTC+TGG + chr5_3:17491181-17491200 Msa0802840:CDS 50.0%
AACCAGAACTTAACCTGGCG+TGG - chr5_3:17491186-17491205 None:intergenic 50.0%
GAGACCACATGTGACAGGTA+AGG - chr5_3:17491606-17491625 None:intergenic 50.0%
GTTTGGAGACCACATGTGAC+AGG - chr5_3:17491611-17491630 None:intergenic 50.0%
TGGTCGTCCACTCCAAACAA+TGG + chr5_3:17492967-17492986 Msa0802840:CDS 50.0%
!! ATGGTGGTGGTGCCATTGTT+TGG - chr5_3:17492982-17493001 None:intergenic 50.0%
! GATGGTGGCATAAGAGATGG+TGG - chr5_3:17492998-17493017 None:intergenic 50.0%
TCAGGTGGTAACATAGGGAC+AGG - chr5_3:17493088-17493107 None:intergenic 50.0%
GTCAAATGAACGGACCGCTT+TGG + chr5_3:17493209-17493228 Msa0802840:CDS 50.0%
TCACCGCTACGAATCCAAAG+CGG - chr5_3:17493226-17493245 None:intergenic 50.0%
! GTCTCTCTGGTGGATACCAA+TGG - chr5_3:17494019-17494038 None:intergenic 50.0%
TGTCAGCAAAATGCCGAGGA+AGG + chr5_3:17494055-17494074 Msa0802840:CDS 50.0%
AAAATGCCGAGGAAGGAACC+TGG + chr5_3:17494062-17494081 Msa0802840:CDS 50.0%
AAATGCCGAGGAAGGAACCT+GGG + chr5_3:17494063-17494082 Msa0802840:CDS 50.0%
CTTGTCCCAAATACTGCAGG+AGG + chr5_3:17494134-17494153 Msa0802840:CDS 50.0%
GAGGACCTCCTGCAGTATTT+GGG - chr5_3:17494142-17494161 None:intergenic 50.0%
AGAGGACCTCCTGCAGTATT+TGG - chr5_3:17494143-17494162 None:intergenic 50.0%
AAATACTGCAGGAGGTCCTC+TGG + chr5_3:17494142-17494161 Msa0802840:CDS 50.0%
GTCTTGAATCACACAGCCAG+AGG - chr5_3:17494161-17494180 None:intergenic 50.0%
!! TGGCATTTGGTGCACAACGT+TGG + chr5_3:17494372-17494391 Msa0802840:CDS 50.0%
TGAAAGGGTTGCAAGCCTCA+TGG + chr5_3:17494418-17494437 Msa0802840:CDS 50.0%
ATCAAGCTCTTTCGCGCTTC+CGG - chr5_3:17494559-17494578 None:intergenic 50.0%
CCATGATTGTCCACCACAAG+TGG - chr5_3:17494626-17494645 None:intergenic 50.0%
!! CCACTTGTGGTGGACAATCA+TGG + chr5_3:17494623-17494642 Msa0802840:CDS 50.0%
TCTGTGGTACCTGAGATCTG+TGG - chr5_3:17494804-17494823 None:intergenic 50.0%
TCGGTCCAACTAGCTATGAG+TGG + chr5_3:17495276-17495295 Msa0802840:CDS 50.0%
GGCACTATCATGAACCCTTG+TGG - chr5_3:17495330-17495349 None:intergenic 50.0%
AGTGCCAATGCTGCTAACTC+AGG + chr5_3:17495417-17495436 Msa0802840:CDS 50.0%
! AGGAGTGCACACTACTTGGA+GGG - chr5_3:17495630-17495649 None:intergenic 50.0%
! AAGGAGTGCACACTACTTGG+AGG - chr5_3:17495631-17495650 None:intergenic 50.0%
! GACAAGGAGTGCACACTACT+TGG - chr5_3:17495634-17495653 None:intergenic 50.0%
GCCTCATTAGTTAGTCAGGG+TGG + chr5_3:17496172-17496191 Msa0802840:three_prime_UTR 50.0%
TTAGTCAGGGTGGTGTGGTT+CGG + chr5_3:17496182-17496201 Msa0802840:three_prime_UTR 50.0%
! TTTGGGACTGAAACCACGCC+AGG + chr5_3:17491170-17491189 Msa0802840:CDS 55.0%
!! GGTGGTGCCATTGTTTGGAG+TGG - chr5_3:17492977-17492996 None:intergenic 55.0%
! GGTGGCATAAGAGATGGTGG+TGG - chr5_3:17492995-17493014 None:intergenic 55.0%
! GGCATTGGATCGAAGTGCCT+CGG - chr5_3:17493046-17493065 None:intergenic 55.0%
! GGACCGCTTTGGATTCGTAG+CGG + chr5_3:17493220-17493239 Msa0802840:CDS 55.0%
GTGCTTCTGGCCATGCAAGT+GGG + chr5_3:17493591-17493610 Msa0802840:CDS 55.0%
GCTGAAGAGTCCCACTTGCA+TGG - chr5_3:17493604-17493623 None:intergenic 55.0%
TGCAAGTGGGACTCTTCAGC+TGG + chr5_3:17493604-17493623 Msa0802840:CDS 55.0%
AGTGGGACTCTTCAGCTGGT+AGG + chr5_3:17493608-17493627 Msa0802840:intron 55.0%
AATGGCCCAGGTTCCTTCCT+CGG - chr5_3:17494071-17494090 None:intergenic 55.0%
CGAGAATCACTCCACTGGGT+TGG - chr5_3:17494714-17494733 None:intergenic 55.0%
TCGCCGCAGTTTCAACCACT+TGG + chr5_3:17494731-17494750 Msa0802840:CDS 55.0%
ATCTGTGGCGTTCGTCACGA+AGG - chr5_3:17494789-17494808 None:intergenic 55.0%
TGACGAACGCCACAGATCTC+AGG + chr5_3:17494792-17494811 Msa0802840:CDS 55.0%
! TTGGAGGGTGCACTAGTGGT+TGG - chr5_3:17495615-17495634 None:intergenic 55.0%
! CTACTTGGAGGGTGCACTAG+TGG - chr5_3:17495619-17495638 None:intergenic 55.0%
TAGTCAGGGTGGTGTGGTTC+GGG + chr5_3:17496183-17496202 Msa0802840:three_prime_UTR 55.0%
GGTGCTTCTGGCCATGCAAG+TGG + chr5_3:17493590-17493609 Msa0802840:CDS 60.0%
CTCTTTCGCGCTTCCGGAGA+AGG - chr5_3:17494553-17494572 None:intergenic 60.0%
!! ATCACTCCACTGGGTTGGCC+AGG - chr5_3:17494709-17494728 None:intergenic 60.0%
GCGGCGAGAATCACTCCACT+GGG - chr5_3:17494718-17494737 None:intergenic 60.0%
TGCGGCGAGAATCACTCCAC+TGG - chr5_3:17494719-17494738 None:intergenic 60.0%
TGGTGCGCTCTTGACTCCCT+CGG - chr5_3:17496097-17496116 None:intergenic 60.0%
ACTGAGCCTGGCCAACCCAG+TGG + chr5_3:17494700-17494719 Msa0802840:CDS 65.0%
TGAGGAGGGTAGAGGGACCG+AGG + chr5_3:17496077-17496096 Msa0802840:three_prime_UTR 65.0%
GAGGAGGGTAGAGGGACCGA+GGG + chr5_3:17496078-17496097 Msa0802840:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 17489976 17496218 17489976 ID=Msa0802840;Name=Msa0802840
chr5_3 mRNA 17489976 17496218 17489976 ID=Msa0802840-mRNA-1;Parent=Msa0802840;Name=Msa0802840-mRNA-1;_AED=0.09;_eAED=0.09;_QI=214|1|0.83|1|0.90|0.83|12|580|802
chr5_3 exon 17489976 17490114 17489976 ID=Msa0802840-mRNA-1:exon:7279;Parent=Msa0802840-mRNA-1
chr5_3 exon 17490318 17490533 17490318 ID=Msa0802840-mRNA-1:exon:7280;Parent=Msa0802840-mRNA-1
chr5_3 exon 17490634 17490809 17490634 ID=Msa0802840-mRNA-1:exon:7281;Parent=Msa0802840-mRNA-1
chr5_3 exon 17491113 17491230 17491113 ID=Msa0802840-mRNA-1:exon:7282;Parent=Msa0802840-mRNA-1
chr5_3 exon 17491888 17492079 17491888 ID=Msa0802840-mRNA-1:exon:7283;Parent=Msa0802840-mRNA-1
chr5_3 exon 17492932 17493402 17492932 ID=Msa0802840-mRNA-1:exon:7284;Parent=Msa0802840-mRNA-1
chr5_3 exon 17493524 17493625 17493524 ID=Msa0802840-mRNA-1:exon:7285;Parent=Msa0802840-mRNA-1
chr5_3 exon 17493989 17494201 17493989 ID=Msa0802840-mRNA-1:exon:7286;Parent=Msa0802840-mRNA-1
chr5_3 exon 17494296 17494464 17494296 ID=Msa0802840-mRNA-1:exon:7287;Parent=Msa0802840-mRNA-1
chr5_3 exon 17494545 17494813 17494545 ID=Msa0802840-mRNA-1:exon:7288;Parent=Msa0802840-mRNA-1
chr5_3 exon 17494991 17495086 17494991 ID=Msa0802840-mRNA-1:exon:7289;Parent=Msa0802840-mRNA-1
chr5_3 exon 17495177 17496218 17495177 ID=Msa0802840-mRNA-1:exon:7290;Parent=Msa0802840-mRNA-1
chr5_3 five_prime_UTR 17489976 17490114 17489976 ID=Msa0802840-mRNA-1:five_prime_utr;Parent=Msa0802840-mRNA-1
chr5_3 five_prime_UTR 17490318 17490392 17490318 ID=Msa0802840-mRNA-1:five_prime_utr;Parent=Msa0802840-mRNA-1
chr5_3 CDS 17490393 17490533 17490393 ID=Msa0802840-mRNA-1:cds;Parent=Msa0802840-mRNA-1
chr5_3 CDS 17490634 17490809 17490634 ID=Msa0802840-mRNA-1:cds;Parent=Msa0802840-mRNA-1
chr5_3 CDS 17491113 17491230 17491113 ID=Msa0802840-mRNA-1:cds;Parent=Msa0802840-mRNA-1
chr5_3 CDS 17491888 17492079 17491888 ID=Msa0802840-mRNA-1:cds;Parent=Msa0802840-mRNA-1
chr5_3 CDS 17492932 17493402 17492932 ID=Msa0802840-mRNA-1:cds;Parent=Msa0802840-mRNA-1
chr5_3 CDS 17493524 17493625 17493524 ID=Msa0802840-mRNA-1:cds;Parent=Msa0802840-mRNA-1
chr5_3 CDS 17493989 17494201 17493989 ID=Msa0802840-mRNA-1:cds;Parent=Msa0802840-mRNA-1
chr5_3 CDS 17494296 17494464 17494296 ID=Msa0802840-mRNA-1:cds;Parent=Msa0802840-mRNA-1
chr5_3 CDS 17494545 17494813 17494545 ID=Msa0802840-mRNA-1:cds;Parent=Msa0802840-mRNA-1
chr5_3 CDS 17494991 17495086 17494991 ID=Msa0802840-mRNA-1:cds;Parent=Msa0802840-mRNA-1
chr5_3 CDS 17495177 17495638 17495177 ID=Msa0802840-mRNA-1:cds;Parent=Msa0802840-mRNA-1
chr5_3 three_prime_UTR 17495639 17496218 17495639 ID=Msa0802840-mRNA-1:three_prime_utr;Parent=Msa0802840-mRNA-1
Gene Sequence

>Msa0802840

ATGTATGGTGATTGTCAAGTAATGTCAACAATGGGAGGGAATGTAGTAGTAAACTCAGAATCTCTCTTCTCTTCTCCGATCCATAACTCTAGCTTCAACTTCATGTCAACCATGCCTTTTCAACCCTTTCCTTCTTCCATGAAAGAAGAAGAAGGAATATTGAGAGGTAAAGAAGAGATAATGGATCAAAGTGGTTCAGGAAGTGAACAAGTTGAAGATAAGTCAGGAAATGAACAAGAGATTAATAATGAGCAACAAGCTACAAAGAAGAAACGTTATCATAGACACACTGCTCGTCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCACACCCAGATGATAAACAAAGACTGAAACTAAGCCATGATTTGGGACTGAAACCACGCCAGGTTAAGTTCTGGTTTCAGAATCGTCGAACTCAGATGAAGGCACAACAAGATCGTTCTGATAACGTGATACTGAGAGCAGAGAATGAGAGTTTGAAGAATGAGAACTATAGGCTACAATCGGCGTTACGTAATATTTTATGTCCTAATTGTGGTGGGCCATGTATAATGGGACCTGATATGGGCTTTGATGATCATCAACTTCGATTTGAAAATGCCCGGTTAAAAGAAGAGCTAGAACGTGTGTGTTGTATAACATCAAGATACACTGGTCGTCCACTCCAAACAATGGCACCACCACCATCTCTTATGCCACCATCACTGGACTTAGACATGAACATTTATCCGAGGCACTTCGATCCAATGCCACCATGCACAGAAATGATTCCTGTCCCTATGTTACCACCTGAACCTTCACATTTTCAAGAGGGTGGTCTCTTATTAATGGAAGATGAGAAATCACTTGCTATGGAACTTGCAGCTTCTTCTATGGCTGAGCTTGTTAAGATGTGTCAAATGAACGGACCGCTTTGGATTCGTAGCGGTGAGAATGATAGGGAAGTTCTTAATTTTGATGAGCATGCTAGGGTTTTTCAATGGCCTTTGAATCTTAAGCAAAGGAATGAGTTGAGGAATGAAGCTACACGTGATTCTGCTGTTGTTATCATGAATAGTGTTACTCTTGTTGATGCTTTTCTTGATGCTCAAAAATGGATGGAATTGTTTCCAACTATTGTTGCTAGGGCAAGAACTGTTCAAATTATAGCTTCAGGTGCTTCTGGCCATGCAAGTGGGACTCTTCAGCTGATGCACGCAGAATTCCAAGTTCTTTCTCCATTGGTATCCACCAGAGAGACTCATTTTCTTCGGTATTGTCAGCAAAATGCCGAGGAAGGAACCTGGGCCATTGTTGATTTTCCTGTTGATAGCTTCCACCAAAACTTTCAAAATTCTTGTCCCAAATACTGCAGGAGGTCCTCTGGCTGTGTGATTCAAGACATGCCAAATGGCTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTTGTAGAGAAACCAGTCCATCAAATATTTAGTAACTATGTGTATAGTGGAATGGCATTTGGTGCACAACGTTGGTTAGGAGTTTTGCAGAGGCAATGTGAAAGGGTTGCAAGCCTCATGGCTAGAAACATATCAGATCTTGGAGTGATACCTTCTCCGGAAGCGCGAAAGAGCTTGATGAAATTAGCAAATAGGATGATAAAAACTTTTAGCCTTAATATGACCACTTGTGGTGGACAATCATGGACTGCTATATCGGATTCACCAGAAGACACCGTTAGAATCACAACTAGGAAAATCACTGAGCCTGGCCAACCCAGTGGAGTGATTCTCGCCGCAGTTTCAACCACTTGGCTTCCTTATCCTCATACCAAAGTCTTTGATCTCCTTCGTGACGAACGCCACAGATCTCAGATGGATGCACTTTCTAATGGGAACTCATTAAATGAAGTGGCTCATATTGCTAACGGTTCACATCCGGGAAACTGCATTTCCCTTCTTCGCATAAATGTAGCAAGTAACTCATCTCAAAATGTAGAGCTAATGCTGCAAGAGAGTTGCACAGATCAATCTGGAAGCTTAGTAGTCTACACGACAGTCGATGTTGATTCGGTCCAACTAGCTATGAGTGGACAAGATCCTTCATGCATTGCACTTCTTCCACAAGGGTTCATGATAGTGCCAATGGTTTCATCAAATGCTGATACATCATCTGAACAAGGTGTCACAGGAACACCATCATCTACTACTAGTGCCAATGCTGCTAACTCAGGTTGTCTTCTTATCATGGGAATGCAAGTTCTAGCAAGCACAATTCCTTCTGCAAAGCTTAACCTTTCAAGTGTCACAGCAATCAATAATCACCTTTGCAATACCCTGCATCAAATTGAAGGTGCTCTTTGTGGCGGCACTAACAGCAATTGCTTTGTTGGGTCTTGCAATGAACCAACCACTAGTGCACCCTCCAAGTAG
Protein sequence

>Msa0802840

MYGDCQVMSTMGGNVVVNSESLFSSPIHNSSFNFMSTMPFQPFPSSMKEEEGILRGKEEIMDQSGSGSEQVEDKSGNEQEINNEQQATKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENESLKNENYRLQSALRNILCPNCGGPCIMGPDMGFDDHQLRFENARLKEELERVCCITSRYTGRPLQTMAPPPSLMPPSLDLDMNIYPRHFDPMPPCTEMIPVPMLPPEPSHFQEGGLLLMEDEKSLAMELAASSMAELVKMCQMNGPLWIRSGENDREVLNFDEHARVFQWPLNLKQRNELRNEATRDSAVVIMNSVTLVDAFLDAQKWMELFPTIVARARTVQIIASGASGHASGTLQLMHAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFHQNFQNSCPKYCRRSSGCVIQDMPNGYSRVTWVEHAKVVEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKSLMKLANRMIKTFSLNMTTCGGQSWTAISDSPEDTVRITTRKITEPGQPSGVILAAVSTTWLPYPHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTVDVDSVQLAMSGQDPSCIALLPQGFMIVPMVSSNADTSSEQGVTGTPSSTTSANAANSGCLLIMGMQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEGALCGGTNSNCFVGSCNEPTTSAPSK*