Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663590 | XP_003604258.1 | 94.681 | 376 | 20 | 0 | 1 | 376 | 1 | 376 | 0.0 | 700 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663590 | sp|P49243|FABH_ARATH | 65.979 | 388 | 112 | 4 | 6 | 375 | 18 | 403 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663590 | G7JEG5 | 94.681 | 376 | 20 | 0 | 1 | 376 | 1 | 376 | 0.0 | 700 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005050 | Msa0663590 | 0.814228 | 1.713973e-51 | -8.615850e-47 |
| Msa0018220 | Msa0663590 | 0.806490 | 8.022398e-50 | -8.615850e-47 |
| Msa0036430 | Msa0663590 | 0.818825 | 1.600973e-52 | -8.615850e-47 |
| Msa0048200 | Msa0663590 | 0.801764 | 7.718460e-49 | -8.615850e-47 |
| Msa0050040 | Msa0663590 | 0.823230 | 1.549435e-53 | -8.615850e-47 |
| Msa0052020 | Msa0663590 | 0.801697 | 7.965918e-49 | -8.615850e-47 |
| Msa0053110 | Msa0663590 | 0.813725 | 2.213684e-51 | -8.615850e-47 |
| Msa0084500 | Msa0663590 | 0.806900 | 6.570823e-50 | -8.615850e-47 |
| Msa0097050 | Msa0663590 | 0.804504 | 2.092616e-49 | -8.615850e-47 |
| Msa0098440 | Msa0663590 | 0.816813 | 4.557582e-52 | -8.615850e-47 |
| Msa0102990 | Msa0663590 | 0.823833 | 1.119548e-53 | -8.615850e-47 |
| Msa0105420 | Msa0663590 | 0.802614 | 5.159696e-49 | -8.615850e-47 |
| Msa0118400 | Msa0663590 | 0.802782 | 4.763523e-49 | -8.615850e-47 |
| Msa0619980 | Msa0663590 | 0.804903 | 1.727806e-49 | -8.615850e-47 |
| Msa0625890 | Msa0663590 | 0.920299 | 1.524763e-87 | -8.615850e-47 |
| Msa0634270 | Msa0663590 | 0.820444 | 6.837837e-53 | -8.615850e-47 |
| Msa0642910 | Msa0663590 | 0.812677 | 3.759811e-51 | -8.615850e-47 |
| Msa0645050 | Msa0663590 | 0.823624 | 1.252962e-53 | -8.615850e-47 |
| Msa0652980 | Msa0663590 | 0.804008 | 2.655075e-49 | -8.615850e-47 |
| Msa0663590 | Msa0663680 | 0.913755 | 4.260440e-84 | -8.615850e-47 |
| Msa0663590 | Msa0678890 | 0.849370 | 3.377767e-60 | -8.615850e-47 |
| Msa0663590 | Msa0680150 | 0.825614 | 4.257680e-54 | -8.615850e-47 |
| Msa0663590 | Msa0691160 | 0.847780 | 9.311305e-60 | -8.615850e-47 |
| Msa0663590 | Msa0707220 | 0.819772 | 9.744015e-53 | -8.615850e-47 |
| Msa0663590 | Msa0720040 | 0.816576 | 5.149510e-52 | -8.615850e-47 |
| Msa0663590 | Msa0722940 | 0.827220 | 1.764434e-54 | -8.615850e-47 |
| Msa0663590 | Msa0723150 | 0.822367 | 2.459851e-53 | -8.615850e-47 |
| Msa0663590 | Msa0737190 | 0.816274 | 6.018356e-52 | -8.615850e-47 |
| Msa0663590 | Msa0741900 | 0.820154 | 7.969887e-53 | -8.615850e-47 |
| Msa0663590 | Msa0747780 | 0.819749 | 9.863325e-53 | -8.615850e-47 |
| Msa0663590 | Msa0754030 | 0.820200 | 7.779107e-53 | -8.615850e-47 |
| Msa0663590 | Msa0761580 | 0.835700 | 1.440838e-56 | -8.615850e-47 |
| Msa0663590 | Msa0778930 | 0.811575 | 6.537167e-51 | -8.615850e-47 |
| Msa0663590 | Msa0802840 | 0.800175 | 1.629958e-48 | -8.615850e-47 |
| Msa0663590 | Msa0807110 | 0.812546 | 4.015298e-51 | -8.615850e-47 |
| Msa0663590 | Msa0810020 | 0.818086 | 2.354273e-52 | -8.615850e-47 |
| Msa0663590 | Msa0816450 | 0.836522 | 8.907474e-57 | -8.615850e-47 |
| Msa0663590 | Msa0820670 | 0.805606 | 1.231030e-49 | -8.615850e-47 |
| Msa0663590 | Msa0822990 | 0.801365 | 9.321424e-49 | -8.615850e-47 |
| Msa0663590 | Msa0833040 | 0.811536 | 6.666005e-51 | -8.615850e-47 |
| Msa0663590 | Msa0841320 | 0.812734 | 3.653209e-51 | -8.615850e-47 |
| Msa0663590 | Msa0850500 | 0.817715 | 2.855346e-52 | -8.615850e-47 |
| Msa0663590 | Msa0862100 | 0.838264 | 3.188793e-57 | -8.615850e-47 |
| Msa0663590 | Msa0867350 | 0.803096 | 4.103495e-49 | -8.615850e-47 |
| Msa0663590 | Msa0872310 | 0.852669 | 3.967600e-61 | -8.615850e-47 |
| Msa0663590 | Msa0873190 | 0.835758 | 1.392358e-56 | -8.615850e-47 |
| Msa0663590 | Msa0885060 | 0.830875 | 2.295568e-55 | -8.615850e-47 |
| Msa0663590 | Msa0886980 | 0.818122 | 2.311366e-52 | -8.615850e-47 |
| Msa0663590 | Msa0896970 | 0.807503 | 4.895871e-50 | -8.615850e-47 |
| Msa0663590 | Msa0905550 | 0.855911 | 4.591063e-62 | -8.615850e-47 |
| Msa0663590 | Msa0931480 | 0.808089 | 3.675168e-50 | -8.615850e-47 |
| Msa0663590 | Msa0937550 | 0.846000 | 2.859082e-59 | -8.615850e-47 |
| Msa0663590 | Msa0938430 | 0.822202 | 2.687811e-53 | -8.615850e-47 |
| Msa0663590 | Msa0951460 | 0.809080 | 2.257439e-50 | -8.615850e-47 |
| Msa0663590 | Msa0951710 | 0.828086 | 1.092896e-54 | -8.615850e-47 |
| Msa0663590 | Msa0951960 | 0.800953 | 1.131407e-48 | -8.615850e-47 |
| Msa0663590 | Msa0973250 | 0.803063 | 4.167998e-49 | -8.615850e-47 |
| Msa0663590 | Msa0974750 | 0.836867 | 7.274380e-57 | -8.615850e-47 |
| Msa0663590 | Msa0975580 | 0.801176 | 1.018736e-48 | -8.615850e-47 |
| Msa0663590 | Msa0988480 | 0.811370 | 7.242665e-51 | -8.615850e-47 |
| Msa0663590 | Msa1004500 | 0.806441 | 8.215195e-50 | -8.615850e-47 |
| Msa0663590 | Msa1009000 | 0.827688 | 1.362457e-54 | -8.615850e-47 |
| Msa0663590 | Msa1014270 | 0.858524 | 7.765789e-63 | -8.615850e-47 |
| Msa0663590 | Msa1022650 | 0.809785 | 1.593806e-50 | -8.615850e-47 |
| Msa0663590 | Msa1032450 | 0.826989 | 2.004433e-54 | -8.615850e-47 |
| Msa0663590 | Msa1033560 | 0.822749 | 2.005346e-53 | -8.615850e-47 |
| Msa0663590 | Msa1037910 | 0.816311 | 5.903190e-52 | -8.615850e-47 |
| Msa0663590 | Msa1041530 | 0.855392 | 6.506801e-62 | -8.615850e-47 |
| Msa0663590 | Msa1042670 | 0.831439 | 1.668724e-55 | -8.615850e-47 |
| Msa0663590 | Msa1045970 | 0.803352 | 3.631155e-49 | -8.615850e-47 |
| Msa0663590 | Msa1055260 | 0.839834 | 1.250354e-57 | -8.615850e-47 |
| Msa0663590 | Msa1055280 | 0.840956 | 6.360856e-58 | -8.615850e-47 |
| Msa0663590 | Msa1061500 | 0.823735 | 1.180037e-53 | -8.615850e-47 |
| Msa0663590 | Msa1081570 | 0.856331 | 3.459166e-62 | -8.615850e-47 |
| Msa0663590 | Msa1098560 | 0.818423 | 1.975562e-52 | -8.615850e-47 |
| Msa0663590 | Msa1106810 | 0.827518 | 1.496968e-54 | -8.615850e-47 |
| Msa0663590 | Msa1113850 | 0.814022 | 1.903291e-51 | -8.615850e-47 |
| Msa0663590 | Msa1123880 | 0.807819 | 4.194615e-50 | -8.615850e-47 |
| Msa0663590 | Msa1127140 | 0.859150 | 5.046092e-63 | -8.615850e-47 |
| Msa0663590 | Msa1129960 | 0.814549 | 1.456233e-51 | -8.615850e-47 |
| Msa0663590 | Msa1129970 | 0.810616 | 1.055177e-50 | -8.615850e-47 |
| Msa0663590 | Msa1145020 | 0.824247 | 8.950141e-54 | -8.615850e-47 |
| Msa0663590 | Msa1160400 | 0.811777 | 5.908456e-51 | -8.615850e-47 |
| Msa0663590 | Msa1166400 | 0.854128 | 1.512532e-61 | -8.615850e-47 |
| Msa0663590 | Msa1169990 | 0.848674 | 5.273672e-60 | -8.615850e-47 |
| Msa0663590 | Msa1176160 | 0.817873 | 2.630830e-52 | -8.615850e-47 |
| Msa0663590 | Msa1201990 | 0.800598 | 1.337125e-48 | -8.615850e-47 |
| Msa0663590 | Msa1221560 | 0.807976 | 3.885876e-50 | -8.615850e-47 |
| Msa0663590 | Msa1227950 | 0.811194 | 7.908746e-51 | -8.615850e-47 |
| Msa0663590 | Msa1227970 | 0.803964 | 2.711380e-49 | -8.615850e-47 |
| Msa0663590 | Msa1228610 | 0.937177 | 5.287638e-98 | -8.615850e-47 |
| Msa0663590 | Msa1307190 | 0.816599 | 5.089073e-52 | -8.615850e-47 |
| Msa0663590 | Msa1350670 | 0.802969 | 4.359112e-49 | -8.615850e-47 |
| Msa0663590 | Msa1355400 | 0.815595 | 8.530742e-52 | -8.615850e-47 |
| Msa0663590 | Msa1379990 | 0.800918 | 1.150277e-48 | -8.615850e-47 |
| Msa0663590 | Msa1382720 | 0.816559 | 5.196337e-52 | -8.615850e-47 |
| Msa0663590 | Msa1408870 | 0.812381 | 4.363680e-51 | -8.615850e-47 |
| Msa0663590 | Msa1420060 | 0.865411 | 6.023874e-65 | -8.615850e-47 |
| Msa0663590 | Msa1421550 | 0.820865 | 5.473690e-53 | -8.615850e-47 |
| Msa0663590 | Msa1445790 | 0.805233 | 1.474006e-49 | -8.615850e-47 |
| Msa0130010 | Msa0663590 | 0.809556 | 1.785012e-50 | -8.615850e-47 |
| Msa0134130 | Msa0663590 | 0.823458 | 1.370216e-53 | -8.615850e-47 |
| Msa0139900 | Msa0663590 | 0.800172 | 1.632385e-48 | -8.615850e-47 |
| Msa0141600 | Msa0663590 | 0.800458 | 1.427569e-48 | -8.615850e-47 |
| Msa0161100 | Msa0663590 | 0.805569 | 1.253234e-49 | -8.615850e-47 |
| Msa0184990 | Msa0663590 | 0.804933 | 1.702567e-49 | -8.615850e-47 |
| Msa0203030 | Msa0663590 | 0.801712 | 7.912485e-49 | -8.615850e-47 |
| Msa0203160 | Msa0663590 | 0.821534 | 3.836338e-53 | -8.615850e-47 |
| Msa0207180 | Msa0663590 | 0.808241 | 3.412387e-50 | -8.615850e-47 |
| Msa0219190 | Msa0663590 | 0.855789 | 4.982899e-62 | -8.615850e-47 |
| Msa0235890 | Msa0663590 | 0.804285 | 2.325153e-49 | -8.615850e-47 |
| Msa0370600 | Msa0663590 | 0.808434 | 3.103508e-50 | -8.615850e-47 |
| Msa0371540 | Msa0663590 | 0.813367 | 2.653601e-51 | -8.615850e-47 |
| Msa0378340 | Msa0663590 | 0.823181 | 1.590711e-53 | -8.615850e-47 |
| Msa0413930 | Msa0663590 | 0.815284 | 1.000442e-51 | -8.615850e-47 |
| Msa0418200 | Msa0663590 | 0.822996 | 1.756158e-53 | -8.615850e-47 |
| Msa0419970 | Msa0663590 | 0.805414 | 1.350418e-49 | -8.615850e-47 |
| Msa0427690 | Msa0663590 | 0.822988 | 1.763670e-53 | -8.615850e-47 |
| Msa0430820 | Msa0663590 | 0.813929 | 1.995780e-51 | -8.615850e-47 |
| Msa0436500 | Msa0663590 | 0.835679 | 1.457926e-56 | -8.615850e-47 |
| Msa0444010 | Msa0663590 | 0.813096 | 3.042307e-51 | -8.615850e-47 |
| Msa0464540 | Msa0663590 | 0.827080 | 1.905928e-54 | -8.615850e-47 |
| Msa0238890 | Msa0663590 | 0.816000 | 6.927699e-52 | -8.615850e-47 |
| Msa0260970 | Msa0663590 | 0.806871 | 6.663947e-50 | -8.615850e-47 |
| Msa0289890 | Msa0663590 | 0.807836 | 4.160687e-50 | -8.615850e-47 |
| Msa0298240 | Msa0663590 | 0.852765 | 3.723039e-61 | -8.615850e-47 |
| Msa0308830 | Msa0663590 | 0.820588 | 6.337294e-53 | -8.615850e-47 |
| Msa0315480 | Msa0663590 | 0.810065 | 1.387362e-50 | -8.615850e-47 |
| Msa0326540 | Msa0663590 | 0.801515 | 8.684369e-49 | -8.615850e-47 |
| Msa0331780 | Msa0663590 | 0.810792 | 9.662440e-51 | -8.615850e-47 |
| Msa0337850 | Msa0663590 | 0.802609 | 5.171850e-49 | -8.615850e-47 |
| Msa0517340 | Msa0663590 | 0.805494 | 1.298967e-49 | -8.615850e-47 |
| Msa0518520 | Msa0663590 | 0.822103 | 2.833663e-53 | -8.615850e-47 |
| Msa0535040 | Msa0663590 | 0.801368 | 9.307534e-49 | -8.615850e-47 |
| Msa0538060 | Msa0663590 | 0.900637 | 6.004093e-78 | -8.615850e-47 |
| Msa0538220 | Msa0663590 | 0.801172 | 1.020774e-48 | -8.615850e-47 |
| Msa0538570 | Msa0663590 | 0.812676 | 3.761144e-51 | -8.615850e-47 |
| Msa0543850 | Msa0663590 | 0.839369 | 1.651580e-57 | -8.615850e-47 |
| Msa0557630 | Msa0663590 | 0.802678 | 5.005598e-49 | -8.615850e-47 |
| Msa0575250 | Msa0663590 | 0.803378 | 3.586798e-49 | -8.615850e-47 |
| Msa0585730 | Msa0663590 | 0.935232 | 1.172078e-96 | -8.615850e-47 |
| Msa0594390 | Msa0663590 | 0.820446 | 6.828319e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663590 | MtrunA17_Chr4g0001461 | 82.398 | 392 | 19 | 1 | 35 | 376 | 1 | 392 | 0.0 | 635 |
| Msa0663590 | MtrunA17_Chr2g0333881 | 72.832 | 346 | 94 | 0 | 31 | 376 | 51 | 396 | 0.0 | 528 |
| Msa0663590 | MtrunA17_Chr5g0396921 | 65.700 | 207 | 52 | 1 | 170 | 376 | 22 | 209 | 4.15e-91 | 272 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663590 | AT1G62640.2 | 65.979 | 388 | 112 | 4 | 6 | 375 | 18 | 403 | 0.0 | 521 |
| Msa0663590 | AT1G62640.1 | 65.979 | 388 | 112 | 4 | 6 | 375 | 18 | 403 | 0.0 | 521 |
Find 80 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTAAACGTCGAGTTCTTTC+AGG | 0.225004 | 4_4:+2490273 | Msa0663590:CDS |
| CATGAATATGAATACTTCTT+TGG | 0.249673 | 4_4:-2492247 | None:intergenic |
| CCACTACATCAATAATTCTT+TGG | 0.266849 | 4_4:-2492558 | None:intergenic |
| ATTATTGCTGCTTCTGGCTT+TGG | 0.274041 | 4_4:+2492709 | Msa0663590:CDS |
| TAATGCATCAGACTCAATTA+AGG | 0.282247 | 4_4:+2492207 | Msa0663590:CDS |
| AGTTAGAAGTGGAAAGATTA+AGG | 0.293816 | 4_4:+2492678 | Msa0663590:CDS |
| GGACAAATTATTGCTGCTTC+TGG | 0.294045 | 4_4:+2492703 | Msa0663590:CDS |
| GCTTTGGTGCTGGTCTTACT+TGG | 0.297418 | 4_4:+2492725 | Msa0663590:CDS |
| TTTCAAAATGTTCTTGTAAT+CGG | 0.300523 | 4_4:+2491584 | Msa0663590:CDS |
| GCATGTAGTGGATTTATCTT+TGG | 0.313034 | 4_4:+2491441 | Msa0663590:CDS |
| TATCAGCTGCTAGTCACATT+AGG | 0.325626 | 4_4:+2491469 | Msa0663590:CDS |
| TGTTGGACTAATTAACAAAA+AGG | 0.327242 | 4_4:-2488333 | None:intergenic |
| ATCAGCTGCTAGTCACATTA+GGG | 0.332459 | 4_4:+2491470 | Msa0663590:CDS |
| ATATCAAATGTGGCTGATTA+TGG | 0.349357 | 4_4:+2492613 | Msa0663590:CDS |
| AGAAGTTCATGTATTCTGTT+TGG | 0.357805 | 4_4:+2491644 | Msa0663590:CDS |
| AGGAAATGGAAGGTGATAAG+AGG | 0.375453 | 4_4:-2488402 | None:intergenic |
| GCTGCTTCTGGCTTTGGTGC+TGG | 0.385323 | 4_4:+2492715 | Msa0663590:CDS |
| GGAAGATGAAGGAGTGAAGT+TGG | 0.386428 | 4_4:-2488379 | None:intergenic |
| CTTTGGTGCTGGTCTTACTT+GGG | 0.392366 | 4_4:+2492726 | Msa0663590:CDS |
| GCAAAGGAGGTTGGGAATCA+TGG | 0.411841 | 4_4:-2488453 | None:intergenic |
| GGGGATAAGGTCTTACTTTG+AGG | 0.412976 | 4_4:+2492767 | Msa0663590:exon |
| TGATTGGTTACTTCTCCATC+AGG | 0.428078 | 4_4:+2492372 | Msa0663590:CDS |
| TACCTGCATCCAGCATTGAT+TGG | 0.433675 | 4_4:+2492356 | Msa0663590:CDS |
| CTCTTTCAAGATATATCGAT+TGG | 0.434773 | 4_4:+2491615 | Msa0663590:CDS |
| GGGATAAGGTCTTACTTTGA+GGG | 0.460615 | 4_4:+2492768 | Msa0663590:exon |
| ATACCTTGGCAAAGGAGGTT+GGG | 0.472067 | 4_4:-2488461 | None:intergenic |
| GAATATGAATACTTCTTTGG+AGG | 0.473078 | 4_4:-2492244 | None:intergenic |
| TAGTTGATACTTCTGATGAA+TGG | 0.482232 | 4_4:+2490229 | Msa0663590:CDS |
| GTATATCACTTGAAAACATA+AGG | 0.488538 | 4_4:-2492817 | None:intergenic |
| TGCTGCCTCTACTGATAAAG+TGG | 0.490848 | 4_4:-2491023 | None:intergenic |
| AGACTCAATTAAGGGTGAGT+TGG | 0.492476 | 4_4:+2492216 | Msa0663590:CDS |
| AATGCATCAGACTCAATTAA+GGG | 0.492850 | 4_4:+2492208 | Msa0663590:CDS |
| GTGATAAGAGGGGAAGATGA+AGG | 0.493811 | 4_4:-2488390 | None:intergenic |
| GCTGTAATGTTATAAGCTGC+TGG | 0.494699 | 4_4:-2491417 | None:intergenic |
| TAGATGAACACACCAAGATT+AGG | 0.495759 | 4_4:-2491090 | None:intergenic |
| CATAGTTTAGCATAACACTT+TGG | 0.499298 | 4_4:+2488278 | Msa0663590:five_prime_UTR |
| AGTGCTGACTCAATTGACTT+TGG | 0.500820 | 4_4:-2492319 | None:intergenic |
| AGAAGTGGAAAGATTAAGGA+AGG | 0.501824 | 4_4:+2492682 | Msa0663590:CDS |
| AAGATTAGGTCAACATCAGC+TGG | 0.502133 | 4_4:-2491076 | None:intergenic |
| CCAAAGAATTATTGATGTAG+TGG | 0.502244 | 4_4:+2492558 | Msa0663590:CDS |
| TTTCAGATTTCAAAACAGCT+TGG | 0.504851 | 4_4:+2491381 | Msa0663590:intron |
| AATTGAGTCAGCACTTCAAA+AGG | 0.505835 | 4_4:+2492327 | Msa0663590:CDS |
| CATACCTTGGCAAAGGAGGT+TGG | 0.506757 | 4_4:-2488462 | None:intergenic |
| AATGCAGCATATAAAGAAGA+AGG | 0.507598 | 4_4:+2492178 | Msa0663590:CDS |
| TTTGGTGCTGGTCTTACTTG+GGG | 0.514017 | 4_4:+2492727 | Msa0663590:CDS |
| GGAAATGGAAGGTGATAAGA+GGG | 0.514373 | 4_4:-2488401 | None:intergenic |
| AGCTGATGTTGACCTAATCT+TGG | 0.514969 | 4_4:+2491078 | Msa0663590:CDS |
| AACCAATCAATGCTGGATGC+AGG | 0.515256 | 4_4:-2492358 | None:intergenic |
| GAGAAGTAACCAATCAATGC+TGG | 0.517393 | 4_4:-2492365 | None:intergenic |
| TATTCATGCATACATATGAA+TGG | 0.524043 | 4_4:+2492262 | Msa0663590:CDS |
| AAGTGCAGCTTCCATTCCAT+TGG | 0.525636 | 4_4:+2492642 | Msa0663590:CDS |
| GGCTGCAAGCTGGTAGGATG+TGG | 0.526765 | 4_4:+2490159 | Msa0663590:CDS |
| AACTCGACGTTTACGAATCC+CGG | 0.530634 | 4_4:-2490265 | None:intergenic |
| AACATTACAGCTGCATGTAG+TGG | 0.532984 | 4_4:+2491429 | Msa0663590:CDS |
| ATTCTGTTTGGAGATGCTGC+TGG | 0.537982 | 4_4:+2491656 | Msa0663590:CDS |
| TGCTGGTGCTGTTCTAGTAC+AGG | 0.539004 | 4_4:+2491673 | Msa0663590:CDS |
| TCATTAGTAATCTCAAGAGT+TGG | 0.547090 | 4_4:-2490192 | None:intergenic |
| GAGTCAGCACTTCAAAAGGC+TGG | 0.548884 | 4_4:+2492331 | Msa0663590:CDS |
| TTAGATGAATCAGTTAGAAG+TGG | 0.549460 | 4_4:+2492667 | Msa0663590:CDS |
| ACTGATTCATCTAAAGCCAA+TGG | 0.554412 | 4_4:-2492658 | None:intergenic |
| TTCATCTAAAGCCAATGGAA+TGG | 0.563272 | 4_4:-2492653 | None:intergenic |
| CTTGACCACTTTATCAGTAG+AGG | 0.564880 | 4_4:+2491018 | Msa0663590:CDS |
| AATGGATAAGTGTTCGCACC+GGG | 0.577062 | 4_4:+2490247 | Msa0663590:CDS |
| GAATGGATAAGTGTTCGCAC+CGG | 0.581811 | 4_4:+2490246 | Msa0663590:CDS |
| AAGACATACCTTGGCAAAGG+AGG | 0.582045 | 4_4:-2488466 | None:intergenic |
| ATGCAGCATATAAAGAAGAA+GGG | 0.586575 | 4_4:+2492179 | Msa0663590:CDS |
| CTTTATCAGTAGAGGCAGCA+AGG | 0.593587 | 4_4:+2491026 | Msa0663590:CDS |
| TGTTAGTCAAGGCTGCAAGC+TGG | 0.594953 | 4_4:+2490149 | Msa0663590:CDS |
| TCTAAGACATACCTTGGCAA+AGG | 0.596664 | 4_4:-2488469 | None:intergenic |
| AGTCAAGGCTGCAAGCTGGT+AGG | 0.597236 | 4_4:+2490153 | Msa0663590:CDS |
| TGCAGCATATAAAGAAGAAG+GGG | 0.606045 | 4_4:+2492180 | Msa0663590:CDS |
| ATTCCCAACCTCCTTTGCCA+AGG | 0.606866 | 4_4:+2488458 | Msa0663590:CDS |
| CAGAATACATGAACTTCTGT+CGG | 0.609245 | 4_4:-2491639 | None:intergenic |
| AGCAAGGAAAGCTCTTGAGA+TGG | 0.614431 | 4_4:+2491042 | Msa0663590:CDS |
| GATTTGAATAGTGATGGTGA+TGG | 0.616422 | 4_4:+2491921 | Msa0663590:CDS |
| TCAGCTGCTAGTCACATTAG+GGG | 0.630404 | 4_4:+2491471 | Msa0663590:CDS |
| GAAAGCTCTTGAGATGGCAA+AGG | 0.633878 | 4_4:+2491048 | Msa0663590:CDS |
| GTTGGTAGATACATTGACCA+TGG | 0.637541 | 4_4:-2488361 | None:intergenic |
| GAAATGGAAGGTGATAAGAG+GGG | 0.692819 | 4_4:-2488400 | None:intergenic |
| ATTGCAGGCGTGCAACTACG+AGG | 0.723991 | 4_4:+2491878 | Msa0663590:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAAATATATATTTTAT+CGG | + | chr4_4:2489431-2489450 | Msa0663590:intron | 0.0% |
| !! | TATATTGATAAAAGATTAAT+AGG | + | chr4_4:2488917-2488936 | Msa0663590:intron | 10.0% |
| !!! | CAAATTAAATATTATGATTT+TGG | + | chr4_4:2489597-2489616 | Msa0663590:intron | 10.0% |
| !! | CAAAAAAAAAAAAAATACAT+AGG | - | chr4_4:2489774-2489793 | None:intergenic | 10.0% |
| !!! | CTTTTTACTTATATAAAAAT+TGG | - | chr4_4:2491199-2491218 | None:intergenic | 10.0% |
| !! | AAAAATTATTTACAACATTT+AGG | - | chr4_4:2491539-2491558 | None:intergenic | 10.0% |
| !!! | ATAATCATAAAAAAAAGTTT+TGG | - | chr4_4:2492434-2492453 | None:intergenic | 10.0% |
| !! | TAATCAAATATATTACTATA+TGG | - | chr4_4:2492474-2492493 | None:intergenic | 10.0% |
| !! | ATATAGTAATATATTTGATT+AGG | + | chr4_4:2492473-2492492 | Msa0663590:intron | 10.0% |
| !! | TATAGTAATATATTTGATTA+GGG | + | chr4_4:2492474-2492493 | Msa0663590:intron | 10.0% |
| !!! | ATTATTTGTTATAAGATGTA+AGG | - | chr4_4:2488676-2488695 | None:intergenic | 15.0% |
| !!! | TTTATACACTTCATTTTTTT+TGG | - | chr4_4:2489519-2489538 | None:intergenic | 15.0% |
| !!! | AAATTGTTTTGAAATATTGT+TGG | + | chr4_4:2490421-2490440 | Msa0663590:intron | 15.0% |
| !!! | TATTTTCATTGAGATTTAAA+TGG | + | chr4_4:2491804-2491823 | Msa0663590:intron | 15.0% |
| !!! | AATTTAGGGAAATTTATTTT+TGG | - | chr4_4:2492404-2492423 | None:intergenic | 15.0% |
| !!! | TTCATTTTATATCATACACT+AGG | + | chr4_4:2488521-2488540 | Msa0663590:intron | 20.0% |
| !! | CTATTCATTATAAACAAATG+TGG | + | chr4_4:2489057-2489076 | Msa0663590:intron | 20.0% |
| !!! | TCTATTTTCATTCATATGTT+AGG | - | chr4_4:2489712-2489731 | None:intergenic | 20.0% |
| !! | AAATTAAAATCAAACCATGA+TGG | + | chr4_4:2490011-2490030 | Msa0663590:intron | 20.0% |
| !! | TATACAAATTATAACCATCA+TGG | - | chr4_4:2490028-2490047 | None:intergenic | 20.0% |
| !!! | TAAGTTTAATTTGGCTTTTA+TGG | + | chr4_4:2490348-2490367 | Msa0663590:intron | 20.0% |
| !! | GAAGAAAAAAAAATGTAGTT+TGG | - | chr4_4:2490609-2490628 | None:intergenic | 20.0% |
| !!! | ATCAGTTGATAATATAAGTT+TGG | - | chr4_4:2490665-2490684 | None:intergenic | 20.0% |
| !!! | TAATAGTTCAGTTTAGTTTT+CGG | + | chr4_4:2490750-2490769 | Msa0663590:intron | 20.0% |
| !!! | TTCACATTTTCATCTAATAT+GGG | - | chr4_4:2490816-2490835 | None:intergenic | 20.0% |
| !!! | ATTCACATTTTCATCTAATA+TGG | - | chr4_4:2490817-2490836 | None:intergenic | 20.0% |
| !! | TATATATCCAATGTCTTATA+TGG | + | chr4_4:2490864-2490883 | Msa0663590:intron | 20.0% |
| !!! | AAGTAAAAAGTACATATATC+TGG | + | chr4_4:2491209-2491228 | Msa0663590:intron | 20.0% |
| !!! | GGTTTTTTATATAAGCAAAA+AGG | - | chr4_4:2491244-2491263 | None:intergenic | 20.0% |
| !!! | TTTTGCTTATATAAAAAACC+AGG | + | chr4_4:2491244-2491263 | Msa0663590:intron | 20.0% |
| !!! | AGTTACTTTTTGTTGAATTA+AGG | + | chr4_4:2491502-2491521 | Msa0663590:intron | 20.0% |
| !!! | TTTTTTCATTTTATGAATGC+AGG | + | chr4_4:2491554-2491573 | Msa0663590:intron | 20.0% |
| !! | TTTCAAAATGTTCTTGTAAT+CGG | + | chr4_4:2491584-2491603 | Msa0663590:CDS | 20.0% |
| !! | ATATATTTGATTAGGGAAAA+AGG | + | chr4_4:2492481-2492500 | Msa0663590:intron | 20.0% |
| !! | TAAATACTGAATTATTAGCA+TGG | - | chr4_4:2492516-2492535 | None:intergenic | 20.0% |
| !!! | ATTTACTTGTTGATAAATGT+AGG | + | chr4_4:2492531-2492550 | Msa0663590:intron | 20.0% |
| ! | TGTTGGACTAATTAACAAAA+AGG | - | chr4_4:2488336-2488355 | None:intergenic | 25.0% |
| !!! | CACTAGGTTTTAATAAGTTA+TGG | + | chr4_4:2488537-2488556 | Msa0663590:intron | 25.0% |
| !! | TTGATAACTGTTACAAATCA+TGG | + | chr4_4:2488799-2488818 | Msa0663590:intron | 25.0% |
| ! | ACTTTACTATGAGTCTTTAT+GGG | - | chr4_4:2488892-2488911 | None:intergenic | 25.0% |
| !! | AAGATTAATAGGAAGTACAA+TGG | + | chr4_4:2488928-2488947 | Msa0663590:intron | 25.0% |
| !!! | GTTAGTTGATAACTAAACTA+TGG | - | chr4_4:2489017-2489036 | None:intergenic | 25.0% |
| ! | GTTTAGTTATCAACTAACTA+TGG | + | chr4_4:2489019-2489038 | Msa0663590:intron | 25.0% |
| ! | ATGCATGTAAATGAAATTGT+TGG | + | chr4_4:2489083-2489102 | Msa0663590:intron | 25.0% |
| ! | TAATAAAAAAATTGCACAGG+AGG | - | chr4_4:2489248-2489267 | None:intergenic | 25.0% |
| ! | GTGTAATAAAAAAATTGCAC+AGG | - | chr4_4:2489251-2489270 | None:intergenic | 25.0% |
| ! | TAATTAATTCCGATACTTCT+GGG | - | chr4_4:2489406-2489425 | None:intergenic | 25.0% |
| ! | ATAATTAATTCCGATACTTC+TGG | - | chr4_4:2489407-2489426 | None:intergenic | 25.0% |
| ! | GATACTTAAAAGATACTTGA+CGG | + | chr4_4:2489453-2489472 | Msa0663590:intron | 25.0% |
| !!! | ACGCGAAATTTTTAGAATTT+AGG | - | chr4_4:2489912-2489931 | None:intergenic | 25.0% |
| ! | TAAAATATGGTTCCAAGTTA+TGG | - | chr4_4:2490095-2490114 | None:intergenic | 25.0% |
| !!! | CTGTAACAAACTCTAAAATA+TGG | - | chr4_4:2490108-2490127 | None:intergenic | 25.0% |
| ! | CGTAAACATCATAAATAGAA+TGG | + | chr4_4:2490318-2490337 | Msa0663590:intron | 25.0% |
| ! | CAATTTCTTCTACATACTTA+TGG | - | chr4_4:2490407-2490426 | None:intergenic | 25.0% |
| !! | ATTCTGTTTTCAATTGTTGA+TGG | + | chr4_4:2490451-2490470 | Msa0663590:intron | 25.0% |
| !! | TTCTGTTTTCAATTGTTGAT+GGG | + | chr4_4:2490452-2490471 | Msa0663590:intron | 25.0% |
| ! | ATCCTCATTATTACACTAAT+AGG | - | chr4_4:2490478-2490497 | None:intergenic | 25.0% |
| ! | AAATTGAACCAAATCGTTAA+TGG | + | chr4_4:2490550-2490569 | Msa0663590:intron | 25.0% |
| !! | GTTTTCTCTAAATATAGTTC+TGG | - | chr4_4:2490587-2490606 | None:intergenic | 25.0% |
| !!! | AATAGTTCAGTTTAGTTTTC+GGG | + | chr4_4:2490751-2490770 | Msa0663590:intron | 25.0% |
| ! | TCTTACTCACATTTATTACT+AGG | - | chr4_4:2490790-2490809 | None:intergenic | 25.0% |
| !! | TTGATTTTGCTTGATGTTTA+TGG | + | chr4_4:2490979-2490998 | Msa0663590:intron | 25.0% |
| ! | TATGATGAAAACCATAAACA+TGG | - | chr4_4:2491747-2491766 | None:intergenic | 25.0% |
| !! | TGGTTTTCATCATAGTAAAT+AGG | + | chr4_4:2491753-2491772 | Msa0663590:intron | 25.0% |
| !! | GGTTTTCATCATAGTAAATA+GGG | + | chr4_4:2491754-2491773 | Msa0663590:intron | 25.0% |
| ! | GTTATATATGTTTACATTGC+AGG | + | chr4_4:2491863-2491882 | Msa0663590:intron | 25.0% |
| !!! | AGTTTTGATTTGAATAGTGA+TGG | + | chr4_4:2491915-2491934 | Msa0663590:CDS | 25.0% |
| ! | AATGTAATCACATATATCAC+CGG | - | chr4_4:2492003-2492022 | None:intergenic | 25.0% |
| ! | CATGAATATGAATACTTCTT+TGG | - | chr4_4:2492250-2492269 | None:intergenic | 25.0% |
| ! | TATTCATGCATACATATGAA+TGG | + | chr4_4:2492262-2492281 | Msa0663590:CDS | 25.0% |
| !!! | GTTTTGGTCACTTAAATTTA+GGG | - | chr4_4:2492418-2492437 | None:intergenic | 25.0% |
| !!! | AGTTTTGGTCACTTAAATTT+AGG | - | chr4_4:2492419-2492438 | None:intergenic | 25.0% |
| !!! | CTATATGGTATATCACTTTT+AGG | - | chr4_4:2492459-2492478 | None:intergenic | 25.0% |
| !!! | ACATTTGATATCACTTTTTC+TGG | - | chr4_4:2492604-2492623 | None:intergenic | 25.0% |
| ! | AGAAAAAGTGATATCAAATG+TGG | + | chr4_4:2492603-2492622 | Msa0663590:CDS | 25.0% |
| ! | GTATATCACTTGAAAACATA+AGG | - | chr4_4:2492820-2492839 | None:intergenic | 25.0% |
| CATAGTTTAGCATAACACTT+TGG | + | chr4_4:2488278-2488297 | Msa0663590:five_prime_UTR | 30.0% | |
| ! | ATTAGTCCAACATTTTTCCA+TGG | + | chr4_4:2488344-2488363 | Msa0663590:five_prime_UTR | 30.0% |
| ! | ACTAAAGCAAACAAGTTTTG+AGG | - | chr4_4:2488425-2488444 | None:intergenic | 30.0% |
| !! | AGAAATTCTAAGACATACCT+TGG | - | chr4_4:2488478-2488497 | None:intergenic | 30.0% |
| TGTTATAAGATGTAAGGTGT+GGG | - | chr4_4:2488670-2488689 | None:intergenic | 30.0% | |
| TTGTTATAAGATGTAAGGTG+TGG | - | chr4_4:2488671-2488690 | None:intergenic | 30.0% | |
| TCATTATGACCTTTATCTCT+GGG | - | chr4_4:2488828-2488847 | None:intergenic | 30.0% | |
| ATCATTATGACCTTTATCTC+TGG | - | chr4_4:2488829-2488848 | None:intergenic | 30.0% | |
| CACTTTACTATGAGTCTTTA+TGG | - | chr4_4:2488893-2488912 | None:intergenic | 30.0% | |
| CAATGGTGAGAGTTATTTAT+AGG | + | chr4_4:2488945-2488964 | Msa0663590:intron | 30.0% | |
| ! | CTAAACTATGGTTAGTTGAT+AGG | - | chr4_4:2489005-2489024 | None:intergenic | 30.0% |
| ! | CCTCAATATTAAGGTTTTTG+AGG | - | chr4_4:2489125-2489144 | None:intergenic | 30.0% |
| CCTCAAAAACCTTAATATTG+AGG | + | chr4_4:2489122-2489141 | Msa0663590:intron | 30.0% | |
| ATTTAACATAATAGTCGCCT+TGG | - | chr4_4:2489181-2489200 | None:intergenic | 30.0% | |
| TCATTAGTAATCTCAAGAGT+TGG | - | chr4_4:2490195-2490214 | None:intergenic | 30.0% | |
| ! | TAGTTGATACTTCTGATGAA+TGG | + | chr4_4:2490229-2490248 | Msa0663590:CDS | 30.0% |
| GGTTACAGCTAAGTTTAATT+TGG | + | chr4_4:2490339-2490358 | Msa0663590:intron | 30.0% | |
| !!! | TTAATTTGGCTTTTATGGAG+TGG | + | chr4_4:2490353-2490372 | Msa0663590:intron | 30.0% |
| TCTACATACTTATGGAAACA+TGG | - | chr4_4:2490399-2490418 | None:intergenic | 30.0% | |
| AATGAGGATTGTTCATGATT+CGG | + | chr4_4:2490489-2490508 | Msa0663590:intron | 30.0% | |
| !! | CTAAATATAGTTCTGGTTCA+GGG | - | chr4_4:2490580-2490599 | None:intergenic | 30.0% |
| !! | TCTAAATATAGTTCTGGTTC+AGG | - | chr4_4:2490581-2490600 | None:intergenic | 30.0% |
| CTGAAATGATTCTATGTGAA+CGG | + | chr4_4:2490632-2490651 | Msa0663590:intron | 30.0% | |
| ! | TATGGTTTCAGGTAAAAATG+TGG | + | chr4_4:2490882-2490901 | Msa0663590:intron | 30.0% |
| AATCAAGTCAAACCTTGTTA+GGG | - | chr4_4:2490965-2490984 | None:intergenic | 30.0% | |
| AAATCAAGTCAAACCTTGTT+AGG | - | chr4_4:2490966-2490985 | None:intergenic | 30.0% | |
| ! | TCTACTTCAGATGATCTTTT+TGG | + | chr4_4:2491109-2491128 | Msa0663590:CDS | 30.0% |
| ! | ATATAAGCAAAAAGGTGCAT+TGG | - | chr4_4:2491236-2491255 | None:intergenic | 30.0% |
| TTTCAGATTTCAAAACAGCT+TGG | + | chr4_4:2491381-2491400 | Msa0663590:intron | 30.0% | |
| CTCTTTCAAGATATATCGAT+TGG | + | chr4_4:2491615-2491634 | Msa0663590:CDS | 30.0% | |
| AGAAGTTCATGTATTCTGTT+TGG | + | chr4_4:2491644-2491663 | Msa0663590:CDS | 30.0% | |
| AATGCAGCATATAAAGAAGA+AGG | + | chr4_4:2492178-2492197 | Msa0663590:CDS | 30.0% | |
| ATGCAGCATATAAAGAAGAA+GGG | + | chr4_4:2492179-2492198 | Msa0663590:CDS | 30.0% | |
| TAATGCATCAGACTCAATTA+AGG | + | chr4_4:2492207-2492226 | Msa0663590:CDS | 30.0% | |
| AATGCATCAGACTCAATTAA+GGG | + | chr4_4:2492208-2492227 | Msa0663590:CDS | 30.0% | |
| GAATATGAATACTTCTTTGG+AGG | - | chr4_4:2492247-2492266 | None:intergenic | 30.0% | |
| ATTTGATTAGGGAAAAAGGT+TGG | + | chr4_4:2492485-2492504 | Msa0663590:intron | 30.0% | |
| CCACTACATCAATAATTCTT+TGG | - | chr4_4:2492561-2492580 | None:intergenic | 30.0% | |
| CCAAAGAATTATTGATGTAG+TGG | + | chr4_4:2492558-2492577 | Msa0663590:CDS | 30.0% | |
| !!! | TTGATATCACTTTTTCTGGA+GGG | - | chr4_4:2492600-2492619 | None:intergenic | 30.0% |
| !!! | TTTGATATCACTTTTTCTGG+AGG | - | chr4_4:2492601-2492620 | None:intergenic | 30.0% |
| ATATCAAATGTGGCTGATTA+TGG | + | chr4_4:2492613-2492632 | Msa0663590:CDS | 30.0% | |
| TTAGATGAATCAGTTAGAAG+TGG | + | chr4_4:2492667-2492686 | Msa0663590:CDS | 30.0% | |
| AGTTAGAAGTGGAAAGATTA+AGG | + | chr4_4:2492678-2492697 | Msa0663590:CDS | 30.0% | |
| CATTGACCATGGAAAAATGT+TGG | - | chr4_4:2488353-2488372 | None:intergenic | 35.0% | |
| !!! | ACAAGTTTTGAGGAAATGGA+AGG | - | chr4_4:2488415-2488434 | None:intergenic | 35.0% |
| !!! | GCAAACAAGTTTTGAGGAAA+TGG | - | chr4_4:2488419-2488438 | None:intergenic | 35.0% |
| !! | GTGTGGGTTGATTACATATT+CGG | - | chr4_4:2488654-2488673 | None:intergenic | 35.0% |
| TGATAGAGAAAACTCATTCG+AGG | - | chr4_4:2488707-2488726 | None:intergenic | 35.0% | |
| GAGATGAAAATTCGTCTCAT+AGG | - | chr4_4:2488741-2488760 | None:intergenic | 35.0% | |
| AGTGCATAAGAGTCTTCATA+TGG | + | chr4_4:2488860-2488879 | Msa0663590:intron | 35.0% | |
| GTGCATAAGAGTCTTCATAT+GGG | + | chr4_4:2488861-2488880 | Msa0663590:intron | 35.0% | |
| !! | CTATGGTTAGTTGATAGGTT+AGG | - | chr4_4:2489000-2489019 | None:intergenic | 35.0% |
| CAAATGCGACCTCAATATTA+AGG | - | chr4_4:2489134-2489153 | None:intergenic | 35.0% | |
| ! | TTGACGACAATTTAAAGCCA+AGG | + | chr4_4:2489161-2489180 | Msa0663590:intron | 35.0% |
| AAAAAAATTGCACAGGAGGA+AGG | - | chr4_4:2489244-2489263 | None:intergenic | 35.0% | |
| TAGACAAATACTATGAAGCC+CGG | + | chr4_4:2489303-2489322 | Msa0663590:intron | 35.0% | |
| AATATTTGTCCTATGAAGCC+CGG | - | chr4_4:2489979-2489998 | None:intergenic | 35.0% | |
| GTAAGAGTCCAAATTCAACA+AGG | - | chr4_4:2490064-2490083 | None:intergenic | 35.0% | |
| TTACTCTCAGTACCATAACT+TGG | + | chr4_4:2490080-2490099 | Msa0663590:intron | 35.0% | |
| !!! | TTTTGCAGACTTGTTAGTCA+AGG | + | chr4_4:2490138-2490157 | Msa0663590:intron | 35.0% |
| GGCCTATTAGTGTAATAATG+AGG | + | chr4_4:2490473-2490492 | Msa0663590:intron | 35.0% | |
| ! | AACAGTTCGGTTTTCTTTCT+TGG | - | chr4_4:2490516-2490535 | None:intergenic | 35.0% |
| AGAAAACCGAACTGTTACAA+TGG | + | chr4_4:2490520-2490539 | Msa0663590:intron | 35.0% | |
| ACCAAACCATTGTAACAGTT+CGG | - | chr4_4:2490529-2490548 | None:intergenic | 35.0% | |
| TTGATCAGTTCGTGAACTAT+CGG | + | chr4_4:2490691-2490710 | Msa0663590:intron | 35.0% | |
| CCTGAAACCATATAAGACAT+TGG | - | chr4_4:2490874-2490893 | None:intergenic | 35.0% | |
| CCAATGTCTTATATGGTTTC+AGG | + | chr4_4:2490871-2490890 | Msa0663590:intron | 35.0% | |
| ACCAAAGAATCATAACACTG+GGG | - | chr4_4:2490925-2490944 | None:intergenic | 35.0% | |
| CACCAAAGAATCATAACACT+GGG | - | chr4_4:2490926-2490945 | None:intergenic | 35.0% | |
| ACACCAAAGAATCATAACAC+TGG | - | chr4_4:2490927-2490946 | None:intergenic | 35.0% | |
| TAGATGAACACACCAAGATT+AGG | - | chr4_4:2491093-2491112 | None:intergenic | 35.0% | |
| CTATAACCAATACTAACCTG+AGG | - | chr4_4:2491142-2491161 | None:intergenic | 35.0% | |
| !! | CTCAGGTTAGTATTGGTTAT+AGG | + | chr4_4:2491140-2491159 | Msa0663590:intron | 35.0% |
| !! | GCATGTAGTGGATTTATCTT+TGG | + | chr4_4:2491441-2491460 | Msa0663590:CDS | 35.0% |
| CAGAATACATGAACTTCTGT+CGG | - | chr4_4:2491642-2491661 | None:intergenic | 35.0% | |
| !! | ACTTTTGTTTGTCAACACTG+AGG | - | chr4_4:2491713-2491732 | None:intergenic | 35.0% |
| !! | TCAGTGTTGACAAACAAAAG+TGG | + | chr4_4:2491712-2491731 | Msa0663590:intron | 35.0% |
| GGCTAACTATACCATGTTTA+TGG | + | chr4_4:2491733-2491752 | Msa0663590:intron | 35.0% | |
| ! | GATTTGAATAGTGATGGTGA+TGG | + | chr4_4:2491921-2491940 | Msa0663590:CDS | 35.0% |
| TAGAAATGTCGATACTGCAA+AGG | - | chr4_4:2491967-2491986 | None:intergenic | 35.0% | |
| ! | GTATCGACATTTCTAATCGA+AGG | + | chr4_4:2491972-2491991 | Msa0663590:intron | 35.0% |
| !! | AAGCACTGACACATATACAT+TGG | - | chr4_4:2492082-2492101 | None:intergenic | 35.0% |
| TGCAGCATATAAAGAAGAAG+GGG | + | chr4_4:2492180-2492199 | Msa0663590:CDS | 35.0% | |
| AATTGAGTCAGCACTTCAAA+AGG | + | chr4_4:2492327-2492346 | Msa0663590:CDS | 35.0% | |
| !!! | TATTTTTGGTCCTTACCTGA+TGG | - | chr4_4:2492390-2492409 | None:intergenic | 35.0% |
| ! | TTCATCTAAAGCCAATGGAA+TGG | - | chr4_4:2492656-2492675 | None:intergenic | 35.0% |
| ! | ACTGATTCATCTAAAGCCAA+TGG | - | chr4_4:2492661-2492680 | None:intergenic | 35.0% |
| AGAAGTGGAAAGATTAAGGA+AGG | + | chr4_4:2492682-2492701 | Msa0663590:CDS | 35.0% | |
| !!! | GGGATCAGCTATTTTTCAAT+GGG | + | chr4_4:2492747-2492766 | Msa0663590:CDS | 35.0% |
| !!! | GGATCAGCTATTTTTCAATG+GGG | + | chr4_4:2492748-2492767 | Msa0663590:CDS | 35.0% |
| !!! | GCTATTTTTCAATGGGGATA+AGG | + | chr4_4:2492754-2492773 | Msa0663590:CDS | 35.0% |
| ! | GTTGGTAGATACATTGACCA+TGG | - | chr4_4:2488364-2488383 | None:intergenic | 40.0% |
| GAAATGGAAGGTGATAAGAG+GGG | - | chr4_4:2488403-2488422 | None:intergenic | 40.0% | |
| GGAAATGGAAGGTGATAAGA+GGG | - | chr4_4:2488404-2488423 | None:intergenic | 40.0% | |
| AGGAAATGGAAGGTGATAAG+AGG | - | chr4_4:2488405-2488424 | None:intergenic | 40.0% | |
| ! | TCTAAGACATACCTTGGCAA+AGG | - | chr4_4:2488472-2488491 | None:intergenic | 40.0% |
| CAATCACAATCGTCATCACT+AGG | + | chr4_4:2488617-2488636 | Msa0663590:intron | 40.0% | |
| TCATGGAATCCCAGAGATAA+AGG | + | chr4_4:2488816-2488835 | Msa0663590:intron | 40.0% | |
| !! | AGTTGATAGGTTAGGTGGTT+AGG | - | chr4_4:2488992-2489011 | None:intergenic | 40.0% |
| !! | TGGTTAGTTGATAGGTTAGG+TGG | - | chr4_4:2488997-2489016 | None:intergenic | 40.0% |
| ! | ATACCGTATCCCAGAAGTAT+CGG | + | chr4_4:2489394-2489413 | Msa0663590:intron | 40.0% |
| !! | ATTCCGATACTTCTGGGATA+CGG | - | chr4_4:2489400-2489419 | None:intergenic | 40.0% |
| GTGATGAAAGTAACGAGAGA+GGG | + | chr4_4:2489619-2489638 | Msa0663590:intron | 40.0% | |
| TGATGAAAGTAACGAGAGAG+GGG | + | chr4_4:2489620-2489639 | Msa0663590:intron | 40.0% | |
| TCCTGCATCCTTGTTGAATT+TGG | + | chr4_4:2490053-2490072 | Msa0663590:intron | 40.0% | |
| TCCAAATTCAACAAGGATGC+AGG | - | chr4_4:2490057-2490076 | None:intergenic | 40.0% | |
| ACCGAACTGTTACAATGGTT+TGG | + | chr4_4:2490525-2490544 | Msa0663590:intron | 40.0% | |
| TGAACCAAATCGTTAATGGC+CGG | + | chr4_4:2490554-2490573 | Msa0663590:intron | 40.0% | |
| GTGAACTATCGGTCATAGTT+TGG | + | chr4_4:2490702-2490721 | Msa0663590:intron | 40.0% | |
| AGTTTCTCTCTTCCCTAACA+AGG | + | chr4_4:2490950-2490969 | Msa0663590:intron | 40.0% | |
| TGCTTGATGTTTATGGTTGC+AGG | + | chr4_4:2490986-2491005 | Msa0663590:intron | 40.0% | |
| TTGATGTTTATGGTTGCAGG+TGG | + | chr4_4:2490989-2491008 | Msa0663590:intron | 40.0% | |
| CTTGACCACTTTATCAGTAG+AGG | + | chr4_4:2491018-2491037 | Msa0663590:CDS | 40.0% | |
| AAGATTAGGTCAACATCAGC+TGG | - | chr4_4:2491079-2491098 | None:intergenic | 40.0% | |
| AGCTGATGTTGACCTAATCT+TGG | + | chr4_4:2491078-2491097 | Msa0663590:CDS | 40.0% | |
| !! | TCAGATGATCTTTTTGGCAC+TGG | + | chr4_4:2491115-2491134 | Msa0663590:CDS | 40.0% |
| AGTTTCTGCAATGTACTTCC+TGG | - | chr4_4:2491265-2491284 | None:intergenic | 40.0% | |
| GCTGTAATGTTATAAGCTGC+TGG | - | chr4_4:2491420-2491439 | None:intergenic | 40.0% | |
| AACATTACAGCTGCATGTAG+TGG | + | chr4_4:2491429-2491448 | Msa0663590:CDS | 40.0% | |
| TATCAGCTGCTAGTCACATT+AGG | + | chr4_4:2491469-2491488 | Msa0663590:CDS | 40.0% | |
| ATCAGCTGCTAGTCACATTA+GGG | + | chr4_4:2491470-2491489 | Msa0663590:CDS | 40.0% | |
| TTGTTTGTCAACACTGAGGA+AGG | - | chr4_4:2491709-2491728 | None:intergenic | 40.0% | |
| ATGTCGATACTGCAAAGGTA+AGG | - | chr4_4:2491962-2491981 | None:intergenic | 40.0% | |
| ACCATAGTTTCACTTCATGC+AGG | + | chr4_4:2492149-2492168 | Msa0663590:intron | 40.0% | |
| AGACTCAATTAAGGGTGAGT+TGG | + | chr4_4:2492216-2492235 | Msa0663590:CDS | 40.0% | |
| !! | AGTGCTGACTCAATTGACTT+TGG | - | chr4_4:2492322-2492341 | None:intergenic | 40.0% |
| GAGAAGTAACCAATCAATGC+TGG | - | chr4_4:2492368-2492387 | None:intergenic | 40.0% | |
| ! | TGATTGGTTACTTCTCCATC+AGG | + | chr4_4:2492372-2492391 | Msa0663590:CDS | 40.0% |
| ! | GGACAAATTATTGCTGCTTC+TGG | + | chr4_4:2492703-2492722 | Msa0663590:CDS | 40.0% |
| !! | ATTATTGCTGCTTCTGGCTT+TGG | + | chr4_4:2492709-2492728 | Msa0663590:CDS | 40.0% |
| !!! | GGGGATCAGCTATTTTTCAA+TGG | + | chr4_4:2492746-2492765 | Msa0663590:CDS | 40.0% |
| GGGATAAGGTCTTACTTTGA+GGG | + | chr4_4:2492768-2492787 | Msa0663590:exon | 40.0% | |
| GGAAGATGAAGGAGTGAAGT+TGG | - | chr4_4:2488382-2488401 | None:intergenic | 45.0% | |
| GTGATAAGAGGGGAAGATGA+AGG | - | chr4_4:2488393-2488412 | None:intergenic | 45.0% | |
| ATACCTTGGCAAAGGAGGTT+GGG | - | chr4_4:2488464-2488483 | None:intergenic | 45.0% | |
| AAGACATACCTTGGCAAAGG+AGG | - | chr4_4:2488469-2488488 | None:intergenic | 45.0% | |
| TATCCGATACGTATCCGACA+CGG | - | chr4_4:2489351-2489370 | None:intergenic | 45.0% | |
| !! | TACTTCTGGGATACGGTATC+CGG | - | chr4_4:2489393-2489412 | None:intergenic | 45.0% |
| GGTGATGAAAGTAACGAGAG+AGG | + | chr4_4:2489618-2489637 | Msa0663590:intron | 45.0% | |
| ATACGGGTACGATACGATAC+GGG | - | chr4_4:2489944-2489963 | None:intergenic | 45.0% | |
| GATACGGGTACGATACGATA+CGG | - | chr4_4:2489945-2489964 | None:intergenic | 45.0% | |
| GAATGGATAAGTGTTCGCAC+CGG | + | chr4_4:2490246-2490265 | Msa0663590:CDS | 45.0% | |
| AATGGATAAGTGTTCGCACC+GGG | + | chr4_4:2490247-2490266 | Msa0663590:CDS | 45.0% | |
| AACTCGACGTTTACGAATCC+CGG | - | chr4_4:2490268-2490287 | None:intergenic | 45.0% | |
| CGTAAACGTCGAGTTCTTTC+AGG | + | chr4_4:2490273-2490292 | Msa0663590:CDS | 45.0% | |
| !! | ATATAGTTCTGGTTCAGGGC+CGG | - | chr4_4:2490576-2490595 | None:intergenic | 45.0% |
| !! | TTTGGCTCTTTCGTGCGATT+TGG | + | chr4_4:2490720-2490739 | Msa0663590:intron | 45.0% |
| !! | CTCTTTCGTGCGATTTGGTT+CGG | + | chr4_4:2490725-2490744 | Msa0663590:intron | 45.0% |
| GCCCCAGTGTTATGATTCTT+TGG | + | chr4_4:2490921-2490940 | Msa0663590:intron | 45.0% | |
| TGCTGCCTCTACTGATAAAG+TGG | - | chr4_4:2491026-2491045 | None:intergenic | 45.0% | |
| CTTTATCAGTAGAGGCAGCA+AGG | + | chr4_4:2491026-2491045 | Msa0663590:CDS | 45.0% | |
| AGCAAGGAAAGCTCTTGAGA+TGG | + | chr4_4:2491042-2491061 | Msa0663590:CDS | 45.0% | |
| GAAAGCTCTTGAGATGGCAA+AGG | + | chr4_4:2491048-2491067 | Msa0663590:CDS | 45.0% | |
| ACTGGTCCTCAGGTTAGTAT+TGG | + | chr4_4:2491133-2491152 | Msa0663590:intron | 45.0% | |
| TCAGCTGCTAGTCACATTAG+GGG | + | chr4_4:2491471-2491490 | Msa0663590:CDS | 45.0% | |
| ATTCTGTTTGGAGATGCTGC+TGG | + | chr4_4:2491656-2491675 | Msa0663590:CDS | 45.0% | |
| ! | TTTCTAATCGAAGGCGTGTC+CGG | + | chr4_4:2491981-2492000 | Msa0663590:intron | 45.0% |
| GCCTGCATGAAGTGAAACTA+TGG | - | chr4_4:2492153-2492172 | None:intergenic | 45.0% | |
| !! | TACCTGCATCCAGCATTGAT+TGG | + | chr4_4:2492356-2492375 | Msa0663590:CDS | 45.0% |
| AACCAATCAATGCTGGATGC+AGG | - | chr4_4:2492361-2492380 | None:intergenic | 45.0% | |
| GGTTACTTCTCCATCAGGTA+AGG | + | chr4_4:2492377-2492396 | Msa0663590:intron | 45.0% | |
| AAGTGCAGCTTCCATTCCAT+TGG | + | chr4_4:2492642-2492661 | Msa0663590:CDS | 45.0% | |
| !! | CTTTGGTGCTGGTCTTACTT+GGG | + | chr4_4:2492726-2492745 | Msa0663590:CDS | 45.0% |
| !! | TTTGGTGCTGGTCTTACTTG+GGG | + | chr4_4:2492727-2492746 | Msa0663590:CDS | 45.0% |
| GGGGATAAGGTCTTACTTTG+AGG | + | chr4_4:2492767-2492786 | Msa0663590:exon | 45.0% | |
| GCAAAGGAGGTTGGGAATCA+TGG | - | chr4_4:2488456-2488475 | None:intergenic | 50.0% | |
| ATTCCCAACCTCCTTTGCCA+AGG | + | chr4_4:2488458-2488477 | Msa0663590:CDS | 50.0% | |
| CATACCTTGGCAAAGGAGGT+TGG | - | chr4_4:2488465-2488484 | None:intergenic | 50.0% | |
| GAAGCCCGGATACTCCAAAA+TGG | + | chr4_4:2489317-2489336 | Msa0663590:intron | 50.0% | |
| !!! | GGCACCATTTTGGAGTATCC+GGG | - | chr4_4:2489324-2489343 | None:intergenic | 50.0% |
| !!! | CGGCACCATTTTGGAGTATC+CGG | - | chr4_4:2489325-2489344 | None:intergenic | 50.0% |
| ATACGTATCCGACACGGGTA+CGG | - | chr4_4:2489345-2489364 | None:intergenic | 50.0% | |
| TACCCGTGTCGGATACGTAT+CGG | + | chr4_4:2489345-2489364 | Msa0663590:intron | 50.0% | |
| ATCCGATACGTATCCGACAC+GGG | - | chr4_4:2489350-2489369 | None:intergenic | 50.0% | |
| TATCGGATACCGATACTCCG+CGG | + | chr4_4:2489362-2489381 | Msa0663590:intron | 50.0% | |
| ACTACGTATCCGGGCTTCAT+AGG | + | chr4_4:2489967-2489986 | Msa0663590:intron | 50.0% | |
| TGTTAGTCAAGGCTGCAAGC+TGG | + | chr4_4:2490149-2490168 | Msa0663590:CDS | 50.0% | |
| !!! | TCTTTTTGGCACTGGTCCTC+AGG | + | chr4_4:2491123-2491142 | Msa0663590:CDS | 50.0% |
| !! | TGCTGGTGCTGTTCTAGTAC+AGG | + | chr4_4:2491673-2491692 | Msa0663590:CDS | 50.0% |
| GAGTCAGCACTTCAAAAGGC+TGG | + | chr4_4:2492331-2492350 | Msa0663590:CDS | 50.0% | |
| !! | GCTTTGGTGCTGGTCTTACT+TGG | + | chr4_4:2492725-2492744 | Msa0663590:CDS | 50.0% |
| TTGCACAGGAGGAAGGCAAG+CGG | - | chr4_4:2489237-2489256 | None:intergenic | 55.0% | |
| ! | ACACGGGTACGGCACCATTT+TGG | - | chr4_4:2489334-2489353 | None:intergenic | 55.0% |
| !! | AAATGGTGCCGTACCCGTGT+CGG | + | chr4_4:2489334-2489353 | Msa0663590:intron | 55.0% |
| ! | TACGGTATCCGGAGTATCCG+CGG | - | chr4_4:2489382-2489401 | None:intergenic | 55.0% |
| CCGGATACGTAGTGCGATAC+GGG | - | chr4_4:2489960-2489979 | None:intergenic | 55.0% | |
| CCCGTATCGCACTACGTATC+CGG | + | chr4_4:2489957-2489976 | Msa0663590:intron | 55.0% | |
| CCCGGATACGTAGTGCGATA+CGG | - | chr4_4:2489961-2489980 | None:intergenic | 55.0% | |
| CCGTATCGCACTACGTATCC+GGG | + | chr4_4:2489958-2489977 | Msa0663590:intron | 55.0% | |
| AGTCAAGGCTGCAAGCTGGT+AGG | + | chr4_4:2490153-2490172 | Msa0663590:CDS | 55.0% | |
| AGGGCCGGCCATTAACGATT+TGG | - | chr4_4:2490561-2490580 | None:intergenic | 55.0% | |
| ATTGCAGGCGTGCAACTACG+AGG | + | chr4_4:2491878-2491897 | Msa0663590:intron | 55.0% | |
| TGCACAGGAGGAAGGCAAGC+GGG | - | chr4_4:2489236-2489255 | None:intergenic | 60.0% | |
| ! | CCGGAGTATCCGCGGAGTAT+CGG | - | chr4_4:2489374-2489393 | None:intergenic | 60.0% |
| CCGATACTCCGCGGATACTC+CGG | + | chr4_4:2489371-2489390 | Msa0663590:intron | 60.0% | |
| GGCTGCAAGCTGGTAGGATG+TGG | + | chr4_4:2490159-2490178 | Msa0663590:CDS | 60.0% | |
| !! | GCTGCTTCTGGCTTTGGTGC+TGG | + | chr4_4:2492715-2492734 | Msa0663590:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 2488255 | 2492906 | 2488255 | ID=Msa0663590;Name=Msa0663590 |
| chr4_4 | mRNA | 2488255 | 2492906 | 2488255 | ID=Msa0663590-mRNA-1;Parent=Msa0663590;Name=Msa0663590-mRNA-1;_AED=0.11;_eAED=0.11;_QI=115|1|1|1|1|1|8|132|376 |
| chr4_4 | exon | 2488255 | 2488479 | 2488255 | ID=Msa0663590-mRNA-1:exon:690;Parent=Msa0663590-mRNA-1 |
| chr4_4 | exon | 2490146 | 2490294 | 2490146 | ID=Msa0663590-mRNA-1:exon:691;Parent=Msa0663590-mRNA-1 |
| chr4_4 | exon | 2491008 | 2491144 | 2491008 | ID=Msa0663590-mRNA-1:exon:692;Parent=Msa0663590-mRNA-1 |
| chr4_4 | exon | 2491387 | 2491492 | 2491387 | ID=Msa0663590-mRNA-1:exon:693;Parent=Msa0663590-mRNA-1 |
| chr4_4 | exon | 2491576 | 2491694 | 2491576 | ID=Msa0663590-mRNA-1:exon:694;Parent=Msa0663590-mRNA-1 |
| chr4_4 | exon | 2491885 | 2491949 | 2491885 | ID=Msa0663590-mRNA-1:exon:695;Parent=Msa0663590-mRNA-1 |
| chr4_4 | exon | 2492171 | 2492393 | 2492171 | ID=Msa0663590-mRNA-1:exon:696;Parent=Msa0663590-mRNA-1 |
| chr4_4 | exon | 2492553 | 2492906 | 2492553 | ID=Msa0663590-mRNA-1:exon:697;Parent=Msa0663590-mRNA-1 |
| chr4_4 | five_prime_UTR | 2488255 | 2488369 | 2488255 | ID=Msa0663590-mRNA-1:five_prime_utr;Parent=Msa0663590-mRNA-1 |
| chr4_4 | CDS | 2488370 | 2488479 | 2488370 | ID=Msa0663590-mRNA-1:cds;Parent=Msa0663590-mRNA-1 |
| chr4_4 | CDS | 2490146 | 2490294 | 2490146 | ID=Msa0663590-mRNA-1:cds;Parent=Msa0663590-mRNA-1 |
| chr4_4 | CDS | 2491008 | 2491144 | 2491008 | ID=Msa0663590-mRNA-1:cds;Parent=Msa0663590-mRNA-1 |
| chr4_4 | CDS | 2491387 | 2491492 | 2491387 | ID=Msa0663590-mRNA-1:cds;Parent=Msa0663590-mRNA-1 |
| chr4_4 | CDS | 2491576 | 2491694 | 2491576 | ID=Msa0663590-mRNA-1:cds;Parent=Msa0663590-mRNA-1 |
| chr4_4 | CDS | 2491885 | 2491949 | 2491885 | ID=Msa0663590-mRNA-1:cds;Parent=Msa0663590-mRNA-1 |
| chr4_4 | CDS | 2492171 | 2492393 | 2492171 | ID=Msa0663590-mRNA-1:cds;Parent=Msa0663590-mRNA-1 |
| chr4_4 | CDS | 2492553 | 2492774 | 2492553 | ID=Msa0663590-mRNA-1:cds;Parent=Msa0663590-mRNA-1 |
| chr4_4 | three_prime_UTR | 2492775 | 2492906 | 2492775 | ID=Msa0663590-mRNA-1:three_prime_utr;Parent=Msa0663590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
