AlfalfaGEDB | Msa0842970

M. sativa cultivar zhongmu-4 / Msa0842970

KEGG: K11866
GO: GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016579 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070536 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:1901564
PFAM: PF01398.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0842970	XP_003613227.1	96.596	235	8	0	1	235	1	235	1.42e-169	476

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0842970	sp\|Q6NKP9\|AMSH2_ARATH	71.556	225	60	3	12	235	2	223	1.97e-110	319

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0842970	G7K1D2	96.596	235	8	0	1	235	1	235	6.81e-170	476

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0071550	Msa0842970	0.811415	7.081145e-51	-8.615850e-47
Msa0111310	Msa0842970	0.866565	2.598486e-65	-8.615850e-47
Msa0178350	Msa0842970	0.873939	9.963621e-68	-8.615850e-47
Msa0223290	Msa0842970	0.803811	2.917573e-49	-8.615850e-47
Msa0223380	Msa0842970	0.827197	1.786489e-54	-8.615850e-47
Msa0282170	Msa0842970	0.807163	5.780355e-50	-8.615850e-47
Msa0288240	Msa0842970	0.826477	2.655246e-54	-8.615850e-47
Msa0288330	Msa0842970	0.821505	3.896817e-53	-8.615850e-47
Msa0326670	Msa0842970	0.830051	3.649902e-55	-8.615850e-47
Msa0366470	Msa0842970	0.835920	1.266824e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0842970	MtrunA17_Chr5g0413531	96.596	235	8	0	1	235	1	235	1.31e-173	476
Msa0842970	MtrunA17_Chr6g0484221	60.000	175	70	0	61	235	339	513	4.44e-81	251
Msa0842970	MtrunA17_Chr4g0068071	50.893	224	109	1	12	235	285	507	4.71e-80	248
Msa0842970	MtrunA17_Chr8g0391111	60.000	175	70	0	61	235	338	512	8.33e-72	227

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0842970	AT1G10600.4	71.556	225	60	3	12	235	2	223	2.00e-111	319
Msa0842970	AT1G10600.1	71.556	225	60	3	12	235	2	223	2.00e-111	319
Msa0842970	AT1G10600.3	71.111	225	60	4	12	235	2	222	1.45e-108	312
Msa0842970	AT1G48790.1	56.989	186	80	0	50	235	322	507	1.52e-78	245
Msa0842970	AT1G10600.2	79.339	121	25	0	115	235	46	166	5.67e-73	219
Msa0842970	AT4G16144.1	50.000	68	34	0	55	122	327	394	4.98e-17	79.7

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Find 92 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTTCAAACCTTAAAT+TGG	0.208091	5_4:+20471348	None:intergenic
AACATTTGATTTAATGTAAT+TGG	0.155597	5_4:-20471070	Msa0842970:three_prime_UTR
AAGTTGTTTCATGTCATCGG+TGG	0.601407	5_4:-20472113	Msa0842970:CDS
AATAAAATCAGTTTATATTA+TGG	0.188868	5_4:-20473755	Msa0842970:exon
AATACAATCGCAAATGCCTC+AGG	0.530998	5_4:+20471790	None:intergenic
AATCATACCAAAGCAGGAAT+CGG	0.516666	5_4:-20472529	Msa0842970:CDS
AATGACACGATCCTTAAGGC+AGG	0.631578	5_4:-20475434	Msa0842970:five_prime_UTR
AATGTGTGCTATATCCATTG+TGG	0.706127	5_4:+20471286	None:intergenic
ACACAACACAGTGCAGGGGA+AGG	0.620815	5_4:+20473688	None:intergenic
ACACAGTGCAGGGGAAGGCG+AGG	0.635341	5_4:+20473693	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTATTCCAAGTCTATCTTAT+AGG	-	chr5_4:20471220-20471239	Msa0842970:three_prime_UTR	30.0%
ATACTCCTATAAGATAGACT+TGG	+	chr5_4:20471228-20471247	None:intergenic	30.0%
TTGAATTCTGTTGTTCATGA+AGG	-	chr5_4:20471342-20471361	Msa0842970:CDS	30.0%
AACATGAACATGTTCCTTAT+TGG	-	chr5_4:20471544-20471563	Msa0842970:intron	30.0%
TGTGTTTCATCTATGATTCA+CGG	-	chr5_4:20471580-20471599	Msa0842970:intron	30.0%
TGTTATCTACAGAGATCAAA+GGG	+	chr5_4:20471799-20471818	None:intergenic	30.0%
ATGTTATCTACAGAGATCAA+AGG	+	chr5_4:20471800-20471819	None:intergenic	30.0%
TTCAATGTAAGCATATGTGT+CGG	+	chr5_4:20471977-20471996	None:intergenic	30.0%
GCACATAGATATACATTGAT+TGG	+	chr5_4:20472320-20472339	None:intergenic	30.0%
ATTTCATAATTCCAATGACG+AGG	-	chr5_4:20472694-20472713	Msa0842970:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	20471004	20475529	20471004	ID=Msa0842970;Name=Msa0842970
chr5_4	mRNA	20471004	20475529	20471004	ID=Msa0842970-mRNA-1;Parent=Msa0842970;Name=Msa0842970-mRNA-1;_AED=0.21;_eAED=0.21;_QI=288\|1\|1\|1\|0.71\|0.75\|8\|332\|235
chr5_4	exon	20471004	20471510	20471004	ID=Msa0842970-mRNA-1:exon:8470;Parent=Msa0842970-mRNA-1
chr5_4	exon	20471769	20471821	20471769	ID=Msa0842970-mRNA-1:exon:8469;Parent=Msa0842970-mRNA-1
chr5_4	exon	20472087	20472149	20472087	ID=Msa0842970-mRNA-1:exon:8468;Parent=Msa0842970-mRNA-1
chr5_4	exon	20472321	20472395	20472321	ID=Msa0842970-mRNA-1:exon:8467;Parent=Msa0842970-mRNA-1
chr5_4	exon	20472518	20472580	20472518	ID=Msa0842970-mRNA-1:exon:8466;Parent=Msa0842970-mRNA-1
chr5_4	exon	20473177	20473266	20473177	ID=Msa0842970-mRNA-1:exon:8465;Parent=Msa0842970-mRNA-1
chr5_4	exon	20473570	20473866	20473570	ID=Msa0842970-mRNA-1:exon:8464;Parent=Msa0842970-mRNA-1
chr5_4	exon	20475350	20475529	20475350	ID=Msa0842970-mRNA-1:exon:8463;Parent=Msa0842970-mRNA-1
chr5_4	five_prime_UTR	20475350	20475529	20475350	ID=Msa0842970-mRNA-1:five_prime_utr;Parent=Msa0842970-mRNA-1
chr5_4	five_prime_UTR	20473759	20473866	20473759	ID=Msa0842970-mRNA-1:five_prime_utr;Parent=Msa0842970-mRNA-1
chr5_4	CDS	20473570	20473758	20473570	ID=Msa0842970-mRNA-1:cds;Parent=Msa0842970-mRNA-1
chr5_4	CDS	20473177	20473266	20473177	ID=Msa0842970-mRNA-1:cds;Parent=Msa0842970-mRNA-1
chr5_4	CDS	20472518	20472580	20472518	ID=Msa0842970-mRNA-1:cds;Parent=Msa0842970-mRNA-1
chr5_4	CDS	20472321	20472395	20472321	ID=Msa0842970-mRNA-1:cds;Parent=Msa0842970-mRNA-1
chr5_4	CDS	20472087	20472149	20472087	ID=Msa0842970-mRNA-1:cds;Parent=Msa0842970-mRNA-1
chr5_4	CDS	20471769	20471821	20471769	ID=Msa0842970-mRNA-1:cds;Parent=Msa0842970-mRNA-1
chr5_4	CDS	20471336	20471510	20471336	ID=Msa0842970-mRNA-1:cds;Parent=Msa0842970-mRNA-1
chr5_4	three_prime_UTR	20471004	20471335	20471004	ID=Msa0842970-mRNA-1:three_prime_utr;Parent=Msa0842970-mRNA-1

Gene Sequence

>Msa0842970

ATGGAATGCCATAAATCCTTTTTAGATCATAAAGTAACCAAGTCCTCGCCTTCCCCTGCACTGTGTTGTGTGGAGCCAGTGGATCAAGATGAACAAAAATCTCATATTACAGCTTTTAATTCAGGAGATGGATCCACAAATTCAGATAACGAATCTTCTTCATCAAAGACCGTGCGTGATGTACATATCTCAATGCGGTTAATGGAGGACTTCCTTGATCTTGCTAAAGAAAATACAGAAAAGGATCTGGAAACATGTGGTATACTTGGTGCCTTTCTTGAGAAGGGAACCCTCTATATGACCACACTAATCATACCAAAGCAGGAATCGGCATCTAATTCATGTAATGCCACAAATGAGGAGGAAGTTTTCACAATTCTAAATGAAAGATCCCTTTATCCTGTTGGATGGATCCATACGCACCCTTCTCAAAGTTGTTTCATGTCATCGGTGGATCTGCACACTCAATATTCCTACCAGGCAATGATTCCTGAGGCATTTGCGATTGTATTGGCACCAACTGATACCTCAAGGAGCTGTGGTCTCTTTCGCCTAACTGAACCGGATGGTATGGATATTCTAAGAAGTTGTCCGGAGAGGGGATTTCATCCACACAAAGAACCAGATAATGGCAACCCTGTGTACGAGCACTGCTCCAATGTGTACAAAAACTCCAATTTAAGGTTTGAAATCTTTGATTTACGCTAA

Protein sequence

>Msa0842970

MECHKSFLDHKVTKSSPSPALCCVEPVDQDEQKSHITAFNSGDGSTNSDNESSSSKTVRDVHISMRLMEDFLDLAKENTEKDLETCGILGAFLEKGTLYMTTLIIPKQESASNSCNATNEEEVFTILNERSLYPVGWIHTHPSQSCFMSSVDLHTQYSYQAMIPEAFAIVLAPTDTSRSCGLFRLTEPDGMDILRSCPERGFHPHKEPDNGNPVYEHCSNVYKNSNLRFEIFDLR*