Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842970 | XP_003613227.1 | 96.596 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 1.42e-169 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842970 | sp|Q6NKP9|AMSH2_ARATH | 71.556 | 225 | 60 | 3 | 12 | 235 | 2 | 223 | 1.97e-110 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842970 | G7K1D2 | 96.596 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 6.81e-170 | 476 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071550 | Msa0842970 | 0.811415 | 7.081145e-51 | -8.615850e-47 |
| Msa0111310 | Msa0842970 | 0.866565 | 2.598486e-65 | -8.615850e-47 |
| Msa0617830 | Msa0842970 | 0.805564 | 1.255977e-49 | -8.615850e-47 |
| Msa0640380 | Msa0842970 | 0.803852 | 2.860672e-49 | -8.615850e-47 |
| Msa0656270 | Msa0842970 | 0.821587 | 3.728987e-53 | -8.615850e-47 |
| Msa0672120 | Msa0842970 | 0.813880 | 2.045922e-51 | -8.615850e-47 |
| Msa0678820 | Msa0842970 | 0.807491 | 4.925225e-50 | -8.615850e-47 |
| Msa0700070 | Msa0842970 | 0.814758 | 1.308869e-51 | -8.615850e-47 |
| Msa0723140 | Msa0842970 | 0.803156 | 3.988248e-49 | -8.615850e-47 |
| Msa0763470 | Msa0842970 | 0.885214 | 9.857686e-72 | -8.615850e-47 |
| Msa0782470 | Msa0842970 | 0.804524 | 2.072437e-49 | -8.615850e-47 |
| Msa0782490 | Msa0842970 | 0.817835 | 2.683647e-52 | -8.615850e-47 |
| Msa0789270 | Msa0842970 | 0.813503 | 2.477192e-51 | -8.615850e-47 |
| Msa0789280 | Msa0842970 | 0.811435 | 7.012973e-51 | -8.615850e-47 |
| Msa0789290 | Msa0842970 | 0.812901 | 3.358171e-51 | -8.615850e-47 |
| Msa0789300 | Msa0842970 | 0.814661 | 1.374902e-51 | -8.615850e-47 |
| Msa0178350 | Msa0842970 | 0.873939 | 9.963621e-68 | -8.615850e-47 |
| Msa0223290 | Msa0842970 | 0.803811 | 2.917573e-49 | -8.615850e-47 |
| Msa0223380 | Msa0842970 | 0.827197 | 1.786489e-54 | -8.615850e-47 |
| Msa0366470 | Msa0842970 | 0.835920 | 1.266824e-56 | -8.615850e-47 |
| Msa0389810 | Msa0842970 | 0.816734 | 4.746019e-52 | -8.615850e-47 |
| Msa0462590 | Msa0842970 | 0.817433 | 3.306319e-52 | -8.615850e-47 |
| Msa0468130 | Msa0842970 | 0.811552 | 6.612946e-51 | -8.615850e-47 |
| Msa0473240 | Msa0842970 | 0.807103 | 5.952632e-50 | -8.615850e-47 |
| Msa0482190 | Msa0842970 | -0.802794 | 4.736883e-49 | -8.615850e-47 |
| Msa0282170 | Msa0842970 | 0.807163 | 5.780355e-50 | -8.615850e-47 |
| Msa0288240 | Msa0842970 | 0.826477 | 2.655246e-54 | -8.615850e-47 |
| Msa0288330 | Msa0842970 | 0.821505 | 3.896817e-53 | -8.615850e-47 |
| Msa0326670 | Msa0842970 | 0.830051 | 3.649902e-55 | -8.615850e-47 |
| Msa0543900 | Msa0842970 | 0.807273 | 5.478464e-50 | -8.615850e-47 |
| Msa0581920 | Msa0842970 | 0.841519 | 4.524025e-58 | -8.615850e-47 |
| Msa0599770 | Msa0842970 | 0.804162 | 2.465670e-49 | -8.615850e-47 |
| Msa0842970 | Msa0982270 | 0.818275 | 2.134051e-52 | -8.615850e-47 |
| Msa0842970 | Msa1012920 | 0.827613 | 1.420189e-54 | -8.615850e-47 |
| Msa0842970 | Msa1021340 | 0.824444 | 8.046117e-54 | -8.615850e-47 |
| Msa0842970 | Msa1054410 | 0.811011 | 8.665471e-51 | -8.615850e-47 |
| Msa0842970 | Msa1141250 | -0.848327 | 6.576503e-60 | -8.615850e-47 |
| Msa0842970 | Msa1148720 | 0.810218 | 1.286078e-50 | -8.615850e-47 |
| Msa0842970 | Msa1148750 | 0.815637 | 8.347544e-52 | -8.615850e-47 |
| Msa0842970 | Msa1187520 | 0.807279 | 5.462054e-50 | -8.615850e-47 |
| Msa0842970 | Msa1211390 | 0.804592 | 2.005768e-49 | -8.615850e-47 |
| Msa0842970 | Msa1252070 | 0.835857 | 1.314424e-56 | -8.615850e-47 |
| Msa0842970 | Msa1258380 | -0.800952 | 1.132237e-48 | -8.615850e-47 |
| Msa0842970 | Msa1282920 | 0.800341 | 1.508209e-48 | -8.615850e-47 |
| Msa0842970 | Msa1307740 | 0.813162 | 2.943012e-51 | -8.615850e-47 |
| Msa0842970 | Msa1335970 | -0.801445 | 8.972772e-49 | -8.615850e-47 |
| Msa0842970 | Msa1397970 | 0.802538 | 5.350582e-49 | -8.615850e-47 |
| Msa0842970 | Msa1427830 | 0.802699 | 4.955957e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842970 | MtrunA17_Chr5g0413531 | 96.596 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 1.31e-173 | 476 |
| Msa0842970 | MtrunA17_Chr6g0484221 | 60.000 | 175 | 70 | 0 | 61 | 235 | 339 | 513 | 4.44e-81 | 251 |
| Msa0842970 | MtrunA17_Chr4g0068071 | 50.893 | 224 | 109 | 1 | 12 | 235 | 285 | 507 | 4.71e-80 | 248 |
| Msa0842970 | MtrunA17_Chr8g0391111 | 60.000 | 175 | 70 | 0 | 61 | 235 | 338 | 512 | 8.33e-72 | 227 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842970 | AT1G10600.4 | 71.556 | 225 | 60 | 3 | 12 | 235 | 2 | 223 | 2.00e-111 | 319 |
| Msa0842970 | AT1G10600.1 | 71.556 | 225 | 60 | 3 | 12 | 235 | 2 | 223 | 2.00e-111 | 319 |
| Msa0842970 | AT1G10600.3 | 71.111 | 225 | 60 | 4 | 12 | 235 | 2 | 222 | 1.45e-108 | 312 |
| Msa0842970 | AT1G48790.1 | 56.989 | 186 | 80 | 0 | 50 | 235 | 322 | 507 | 1.52e-78 | 245 |
| Msa0842970 | AT1G10600.2 | 79.339 | 121 | 25 | 0 | 115 | 235 | 46 | 166 | 5.67e-73 | 219 |
| Msa0842970 | AT4G16144.1 | 50.000 | 68 | 34 | 0 | 55 | 122 | 327 | 394 | 4.98e-17 | 79.7 |
Find 92 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATAAATTGAAAGTTTA+AGG | 0.034458 | 5_4:-20471035 | Msa0842970:three_prime_UTR |
| AACATTTGATTTAATGTAAT+TGG | 0.155597 | 5_4:-20471070 | Msa0842970:three_prime_UTR |
| AATAAAATCAGTTTATATTA+TGG | 0.188868 | 5_4:-20473755 | Msa0842970:exon |
| AAAGATTTCAAACCTTAAAT+TGG | 0.208091 | 5_4:+20471348 | None:intergenic |
| GGTTACTTTATGATCTAAAA+AGG | 0.243770 | 5_4:+20473720 | None:intergenic |
| TTTCCAGTCAATGCGGTTAA+TGG | 0.255071 | 5_4:-20473251 | Msa0842970:intron |
| TACACAGGGTTGCCATTATC+TGG | 0.318032 | 5_4:+20471400 | None:intergenic |
| GGATCCATCCAACAGGATAA+AGG | 0.336304 | 5_4:+20472323 | None:intergenic |
| TTAGATGCCGATTCCTGCTT+TGG | 0.347374 | 5_4:+20472522 | None:intergenic |
| GTCAAATGGCGAATACATAT+TGG | 0.359757 | 5_4:+20471187 | None:intergenic |
| ATGGAGTCCCGCATGTCTTT+CGG | 0.387733 | 5_4:-20475462 | Msa0842970:five_prime_UTR |
| GAAAACTTCCTCCTCATTTG+TGG | 0.403748 | 5_4:+20472366 | None:intergenic |
| CTTTGAATGAACCTGCCTTA+AGG | 0.408223 | 5_4:+20475423 | None:intergenic |
| AGATTCGTTATCTGAATTTG+TGG | 0.428102 | 5_4:+20473603 | None:intergenic |
| ACTTTATTTCTCACAACAAA+AGG | 0.428473 | 5_4:-20475365 | Msa0842970:five_prime_UTR |
| AGAAAATACAGAAAAGGATC+TGG | 0.430299 | 5_4:-20473206 | Msa0842970:CDS |
| GACTACTCAAACCTCGTCAT+TGG | 0.431880 | 5_4:+20473806 | None:intergenic |
| GATCCATCCAACAGGATAAA+GGG | 0.433194 | 5_4:+20472324 | None:intergenic |
| TAGTCGTTGCTGGTTACAAC+TGG | 0.433888 | 5_4:-20473788 | Msa0842970:five_prime_UTR |
| TGAGGCATTTGCGATTGTAT+TGG | 0.440709 | 5_4:-20471788 | Msa0842970:CDS |
| TGCAGGGGAAGGCGAGGACT+TGG | 0.440859 | 5_4:+20473699 | None:intergenic |
| GAGGTTTGAGTAGTCGTTGC+TGG | 0.442818 | 5_4:-20473798 | Msa0842970:five_prime_UTR |
| CCACACAAAGAACCAGATAA+TGG | 0.451587 | 5_4:-20471412 | Msa0842970:CDS |
| TAAAATGATTCTTACAAGAA+AGG | 0.457601 | 5_4:+20473162 | None:intergenic |
| TGATTAGTGTGGTCATATAG+AGG | 0.468432 | 5_4:+20472547 | None:intergenic |
| TCAAAGTTGTTTCATGTCAT+CGG | 0.468592 | 5_4:-20472116 | Msa0842970:CDS |
| CTGGAAACATGTGGTATACT+TGG | 0.475749 | 5_4:-20473187 | Msa0842970:CDS |
| GTCATTGATAAGGAAGCAGC+TGG | 0.476514 | 5_4:-20473841 | Msa0842970:five_prime_UTR |
| CCATACCATCCGGTTCAGTT+AGG | 0.480057 | 5_4:+20471470 | None:intergenic |
| CCATTATCTGGTTCTTTGTG+TGG | 0.489841 | 5_4:+20471412 | None:intergenic |
| GTGAAATGACACGATCCTTA+AGG | 0.490351 | 5_4:-20475438 | Msa0842970:five_prime_UTR |
| ATTTGACCGTGAAAACAAAC+AGG | 0.490696 | 5_4:-20471171 | Msa0842970:three_prime_UTR |
| CCTAACTGAACCGGATGGTA+TGG | 0.490716 | 5_4:-20471470 | Msa0842970:CDS |
| CAAAAGGCTTCTACATATCA+AGG | 0.490821 | 5_4:-20475349 | Msa0842970:intron |
| TCTCTTTCGCCTAACTGAAC+CGG | 0.490907 | 5_4:-20471479 | Msa0842970:CDS |
| TGCTAAAGAAAATACAGAAA+AGG | 0.496176 | 5_4:-20473212 | Msa0842970:CDS |
| GAAAGATCCCTTTATCCTGT+TGG | 0.497748 | 5_4:-20472331 | Msa0842970:CDS |
| GATCCCTTTATCCTGTTGGA+TGG | 0.503825 | 5_4:-20472327 | Msa0842970:CDS |
| GGCTCCACACAACACAGTGC+AGG | 0.506857 | 5_4:+20473682 | None:intergenic |
| GGATATTCTAAGAAGTTGTC+CGG | 0.509177 | 5_4:-20471449 | Msa0842970:CDS |
| TCTAAGAAGTTGTCCGGAGA+GGG | 0.513245 | 5_4:-20471443 | Msa0842970:CDS |
| TTGGAGCAGTGCTCGTACAC+AGG | 0.513599 | 5_4:+20471385 | None:intergenic |
| AATCATACCAAAGCAGGAAT+CGG | 0.516666 | 5_4:-20472529 | Msa0842970:CDS |
| AGATCTTCTATATCGACAAA+TGG | 0.520924 | 5_4:+20471238 | None:intergenic |
| CACACTAATCATACCAAAGC+AGG | 0.522849 | 5_4:-20472535 | Msa0842970:CDS |
| TTTGATTTAATGTAATTGGA+TGG | 0.525167 | 5_4:-20471066 | Msa0842970:three_prime_UTR |
| CTTTCAATTATCCAGGAGAA+GGG | 0.528394 | 5_4:-20472573 | Msa0842970:intron |
| ATCTTTGATTTACGCTAACA+AGG | 0.528433 | 5_4:-20471331 | Msa0842970:exon |
| AATACAATCGCAAATGCCTC+AGG | 0.530998 | 5_4:+20471790 | None:intergenic |
| GCTCCACACAACACAGTGCA+GGG | 0.532225 | 5_4:+20473683 | None:intergenic |
| CTTAAGGCAGGTTCATTCAA+AGG | 0.536756 | 5_4:-20475422 | Msa0842970:five_prime_UTR |
| TTTGTCGATATAGAAGATCT+AGG | 0.536954 | 5_4:-20471235 | Msa0842970:three_prime_UTR |
| TTCCCCTGCACTGTGTTGTG+TGG | 0.538955 | 5_4:-20473686 | Msa0842970:CDS |
| ATAGCACACATTTGTTTCCA+CGG | 0.543546 | 5_4:-20471275 | Msa0842970:three_prime_UTR |
| ATGTTCTTTCTCAGGAGCTG+TGG | 0.547637 | 5_4:-20471502 | Msa0842970:intron |
| CATACATGGATCCATCCAAC+AGG | 0.548997 | 5_4:+20472316 | None:intergenic |
| TGTGGATGAAATCCCCTCTC+CGG | 0.550246 | 5_4:+20471430 | None:intergenic |
| GCGAATACATATTGGACTCA+TGG | 0.555753 | 5_4:+20471195 | None:intergenic |
| CCAGTCAATGCGGTTAATGG+AGG | 0.564775 | 5_4:-20473248 | Msa0842970:intron |
| CTTAGAATATCCATACCATC+CGG | 0.565799 | 5_4:+20471460 | None:intergenic |
| TTATACCTTGAGGTATCAGT+TGG | 0.568198 | 5_4:+20471763 | None:intergenic |
| GACATGAAACAACTTTGAGA+AGG | 0.582373 | 5_4:+20472121 | None:intergenic |
| CTGCTTTGGTATGATTAGTG+TGG | 0.591645 | 5_4:+20472536 | None:intergenic |
| GTAACATCACTATCTCATCA+TGG | 0.593842 | 5_4:-20475481 | Msa0842970:five_prime_UTR |
| GATGCAGAGAGTCATTGATA+AGG | 0.594632 | 5_4:-20473851 | Msa0842970:intron |
| AGTTGGATCAATCACCTGGT+AGG | 0.599897 | 5_4:+20472072 | None:intergenic |
| AAGTTGTTTCATGTCATCGG+TGG | 0.601407 | 5_4:-20472113 | Msa0842970:CDS |
| ATGTGTGCTATATCCATTGT+GGG | 0.602293 | 5_4:+20471287 | None:intergenic |
| GATTAGTGTGGTCATATAGA+GGG | 0.602810 | 5_4:+20472548 | None:intergenic |
| ACAGTGTAATGCCACAAATG+AGG | 0.604494 | 5_4:-20472377 | Msa0842970:intron |
| TGGAGCAGTGCTCGTACACA+GGG | 0.605100 | 5_4:+20471386 | None:intergenic |
| TTTCACACCGAAAGACATGC+GGG | 0.612116 | 5_4:+20475455 | None:intergenic |
| TTCTAAGAAGTTGTCCGGAG+AGG | 0.617336 | 5_4:-20471444 | Msa0842970:CDS |
| ACACAACACAGTGCAGGGGA+AGG | 0.620815 | 5_4:+20473688 | None:intergenic |
| ATTTCATAATTCCAATGACG+AGG | 0.623794 | 5_4:-20473817 | Msa0842970:five_prime_UTR |
| CTAAGAAGTTGTCCGGAGAG+GGG | 0.631015 | 5_4:-20471442 | Msa0842970:CDS |
| AATGACACGATCCTTAAGGC+AGG | 0.631578 | 5_4:-20475434 | Msa0842970:five_prime_UTR |
| ACATGAAACAACTTTGAGAA+GGG | 0.633287 | 5_4:+20472122 | None:intergenic |
| ACACAGTGCAGGGGAAGGCG+AGG | 0.635341 | 5_4:+20473693 | None:intergenic |
| ATTTCACACCGAAAGACATG+CGG | 0.645210 | 5_4:+20475454 | None:intergenic |
| TGGCACCAACTGATACCTCA+AGG | 0.653936 | 5_4:-20471768 | Msa0842970:intron |
| GCACACTCAATATTCCTACC+AGG | 0.654009 | 5_4:-20472086 | Msa0842970:intron |
| TACGATATGTACATCACGCA+CGG | 0.658126 | 5_4:+20473567 | None:intergenic |
| ACTGTGTTGTGTGGAGCCAG+TGG | 0.659270 | 5_4:-20473677 | Msa0842970:CDS |
| GTGTAATGCCACAAATGAGG+AGG | 0.661724 | 5_4:-20472374 | Msa0842970:CDS |
| GAAAAGGATCTGGAAACATG+TGG | 0.667652 | 5_4:-20473196 | Msa0842970:CDS |
| CAGCGCATACTGTCCCACAA+TGG | 0.672814 | 5_4:-20471300 | Msa0842970:three_prime_UTR |
| CTCCACACAACACAGTGCAG+GGG | 0.680286 | 5_4:+20473684 | None:intergenic |
| TCATTGATAAGGAAGCAGCT+GGG | 0.685046 | 5_4:-20473840 | Msa0842970:five_prime_UTR |
| TTTCGCCTAACTGAACCGGA+TGG | 0.698888 | 5_4:-20471475 | Msa0842970:CDS |
| AATGTGTGCTATATCCATTG+TGG | 0.706127 | 5_4:+20471286 | None:intergenic |
| TGGTGAGAGTCATATCACCG+TGG | 0.792814 | 5_4:+20471258 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATCAGTTTATATTA+TGG | - | chr5_4:20472756-20472775 | Msa0842970:intron | 10.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | + | chr5_4:20471922-20471941 | None:intergenic | 15.0% |
| !! | TTGAATAAAGAATTAAAATG+AGG | - | chr5_4:20472171-20472190 | Msa0842970:intron | 15.0% |
| !! | TGAATAAAGAATTAAAATGA+GGG | - | chr5_4:20472172-20472191 | Msa0842970:intron | 15.0% |
| !!! | ACATTTTCTAAAATTATTAC+TGG | - | chr5_4:20473101-20473120 | Msa0842970:intron | 15.0% |
| !! | TGGAAAATATAAAATGAATA+CGG | + | chr5_4:20473246-20473265 | None:intergenic | 15.0% |
| !! | AAAAAATAACATAAAACTGT+TGG | + | chr5_4:20474689-20474708 | None:intergenic | 15.0% |
| !!! | AACATTTGATTTAATGTAAT+TGG | - | chr5_4:20475441-20475460 | Msa0842970:five_prime_UTR | 15.0% |
| !! | CAAAATAAATTGAAAGTTTA+AGG | - | chr5_4:20475476-20475495 | Msa0842970:five_prime_UTR | 15.0% |
| !!! | ACAAATCAGATAAATTTTAG+TGG | + | chr5_4:20471400-20471419 | None:intergenic | 20.0% |
| !!! | TTATCTGATTTGTTTAAAAG+AGG | - | chr5_4:20471407-20471426 | Msa0842970:CDS | 20.0% |
| !!! | TGAATTATGTCATTTATCAT+CGG | - | chr5_4:20471993-20472012 | Msa0842970:intron | 20.0% |
| !! | AAAAAACTGTCATATTTCAT+TGG | - | chr5_4:20472204-20472223 | Msa0842970:intron | 20.0% |
| !! | AAAATATTATATTCTTCGCA+TGG | + | chr5_4:20472608-20472627 | None:intergenic | 20.0% |
| !!! | ACACATTAATTTGTTTTGTT+TGG | - | chr5_4:20472633-20472652 | Msa0842970:intron | 20.0% |
| !!! | CACATTAATTTGTTTTGTTT+GGG | - | chr5_4:20472634-20472653 | Msa0842970:intron | 20.0% |
| !! | TATGATCTAAAAAGGATTTA+TGG | + | chr5_4:20472786-20472805 | None:intergenic | 20.0% |
| !! | TAAAATGATTCTTACAAGAA+AGG | + | chr5_4:20473352-20473371 | None:intergenic | 20.0% |
| !! | TGTCATGAAAATTGTTAAAT+TGG | - | chr5_4:20473373-20473392 | Msa0842970:intron | 20.0% |
| !! | GATAAAGTTAATATCTTTCA+TGG | + | chr5_4:20473419-20473438 | None:intergenic | 20.0% |
| !! | ATGGAAAGAAAAAAAAAACT+AGG | + | chr5_4:20474222-20474241 | None:intergenic | 20.0% |
| !! | AGATAAATGCTTTATAAAGT+TGG | + | chr5_4:20474459-20474478 | None:intergenic | 20.0% |
| !!! | CAGTTTTATGTTATTTTTTC+AGG | - | chr5_4:20474690-20474709 | Msa0842970:intron | 20.0% |
| !!! | TTTTGCACAATTATGAAAAT+TGG | + | chr5_4:20474810-20474829 | None:intergenic | 20.0% |
| !! | TTTCATAATTGTGCAAAAAA+TGG | - | chr5_4:20474812-20474831 | Msa0842970:intron | 20.0% |
| !! | AAAGATTTCAAACCTTAAAT+TGG | + | chr5_4:20475166-20475185 | None:intergenic | 20.0% |
| !!! | TTTGATTTAATGTAATTGGA+TGG | - | chr5_4:20475445-20475464 | Msa0842970:five_prime_UTR | 20.0% |
| !! | ACTTTATTTCTCACAACAAA+AGG | - | chr5_4:20471146-20471165 | Msa0842970:three_prime_UTR | 25.0% |
| !!! | CTTGGAATAGTATTTTTTGA+AGG | + | chr5_4:20471210-20471229 | None:intergenic | 25.0% |
| ! | AAGTTATCTTTCAACCAATA+AGG | + | chr5_4:20471561-20471580 | None:intergenic | 25.0% |
| ! | TTCAATGTAATCATATGTGT+TGG | - | chr5_4:20471653-20471672 | Msa0842970:intron | 25.0% |
| !! | TATCTTCTTTTTCCTTTAGA+GGG | + | chr5_4:20471768-20471787 | None:intergenic | 25.0% |
| !! | TTATCTTCTTTTTCCTTTAG+AGG | + | chr5_4:20471769-20471788 | None:intergenic | 25.0% |
| ! | TATAAGACACAAATACTCTT+TGG | - | chr5_4:20471819-20471838 | Msa0842970:intron | 25.0% |
| ! | ATAAGACACAAATACTCTTT+GGG | - | chr5_4:20471820-20471839 | Msa0842970:intron | 25.0% |
| ! | TTCAATGTAATCATATGTGT+CGG | + | chr5_4:20471653-20471672 | None:intergenic | 25.0% |
| !!! | GTGATTTTAAGTTGTTTTAG+TGG | - | chr5_4:20472076-20472095 | Msa0842970:intron | 25.0% |
| !!! | AGAAAGCAGATTTTTTCATT+TGG | - | chr5_4:20472122-20472141 | Msa0842970:CDS | 25.0% |
| ! | ATACTGAAGTCAAAGAATAA+TGG | - | chr5_4:20472236-20472255 | Msa0842970:intron | 25.0% |
| !! | CACATAGATATACATTGATT+GGG | + | chr5_4:20472319-20472338 | None:intergenic | 25.0% |
| !! | GTGAATCAGTATGTTTTATA+TGG | + | chr5_4:20472563-20472582 | None:intergenic | 25.0% |
| !!! | ATTAATTTGTTTTGTTTGGG+TGG | - | chr5_4:20472637-20472656 | Msa0842970:intron | 25.0% |
| !!! | TTAATTTGTTTTGTTTGGGT+GGG | - | chr5_4:20472638-20472657 | Msa0842970:intron | 25.0% |
| !! | GGTTACTTTATGATCTAAAA+AGG | + | chr5_4:20472794-20472813 | None:intergenic | 25.0% |
| !!! | CATATTACAGCTTTTAATTC+AGG | - | chr5_4:20472877-20472896 | Msa0842970:intron | 25.0% |
| !!! | GATTTCTATAATTAGCCTTA+TGG | - | chr5_4:20473192-20473211 | Msa0842970:CDS | 25.0% |
| !! | ACGGCATAAATAATTTTCAA+GGG | + | chr5_4:20473227-20473246 | None:intergenic | 25.0% |
| !! | TACGGCATAAATAATTTTCA+AGG | + | chr5_4:20473228-20473247 | None:intergenic | 25.0% |
| !! | TTTATATTTTCCAGTCAATG+CGG | - | chr5_4:20473253-20473272 | Msa0842970:intron | 25.0% |
| !! | TATTTTCTTTAGCAAGATCA+AGG | + | chr5_4:20473293-20473312 | None:intergenic | 25.0% |
| ! | TGCTAAAGAAAATACAGAAA+AGG | - | chr5_4:20473299-20473318 | Msa0842970:intron | 25.0% |
| ! | ATATTAACTTTATCCATCCA+TGG | - | chr5_4:20473425-20473444 | Msa0842970:intron | 25.0% |
| !! | TTTTTCCAAAAGCTAAACTT+TGG | + | chr5_4:20473773-20473792 | None:intergenic | 25.0% |
| !!! | TTTAGCTTTTGGAAAAATCA+TGG | - | chr5_4:20473776-20473795 | Msa0842970:five_prime_UTR | 25.0% |
| !! | TTGCAAACTTACATTCTTTT+TGG | - | chr5_4:20474029-20474048 | Msa0842970:intron | 25.0% |
| !! | AACTTACATTCTTTTTGGAT+TGG | - | chr5_4:20474034-20474053 | Msa0842970:intron | 25.0% |
| !!! | TTTTAGCACATGTTTTTAAC+AGG | - | chr5_4:20474067-20474086 | Msa0842970:intron | 25.0% |
| !!! | TTTAGCACATGTTTTTAACA+GGG | - | chr5_4:20474068-20474087 | Msa0842970:intron | 25.0% |
| ! | AAAAAAAACTAGGACATACA+TGG | + | chr5_4:20474212-20474231 | None:intergenic | 25.0% |
| ! | ACTACTAACTAATTTAACCA+TGG | + | chr5_4:20474565-20474584 | None:intergenic | 25.0% |
| !! | TAGTAGTTGATATCTTCAAA+GGG | - | chr5_4:20474581-20474600 | Msa0842970:intron | 25.0% |
| ! | TTCAAAGGGAATTCATAAAT+AGG | - | chr5_4:20474595-20474614 | Msa0842970:intron | 25.0% |
| !!! | TTACCATAGCATTTTGAAAT+AGG | + | chr5_4:20474936-20474955 | None:intergenic | 25.0% |
| ! | TGTACAAAAACTCCAATTTA+AGG | - | chr5_4:20475151-20475170 | Msa0842970:intron | 25.0% |
| !!! | GTATTTTTTGAAGGAAGACT+TGG | + | chr5_4:20471201-20471220 | None:intergenic | 30.0% |
| CTATTCCAAGTCTATCTTAT+AGG | - | chr5_4:20471220-20471239 | Msa0842970:three_prime_UTR | 30.0% | |
| ATACTCCTATAAGATAGACT+TGG | + | chr5_4:20471228-20471247 | None:intergenic | 30.0% | |
| TTGAATTCTGTTGTTCATGA+AGG | - | chr5_4:20471342-20471361 | Msa0842970:CDS | 30.0% | |
| !!! | CATTAGCCTTTTGAATATCA+GGG | + | chr5_4:20471494-20471513 | None:intergenic | 30.0% |
| !!! | TCATTAGCCTTTTGAATATC+AGG | + | chr5_4:20471495-20471514 | None:intergenic | 30.0% |
| AACATGAACATGTTCCTTAT+TGG | - | chr5_4:20471544-20471563 | Msa0842970:intron | 30.0% | |
| TGTGTTTCATCTATGATTCA+CGG | - | chr5_4:20471580-20471599 | Msa0842970:intron | 30.0% | |
| !! | ATCTTCTTTTTCCTTTAGAG+GGG | + | chr5_4:20471767-20471786 | None:intergenic | 30.0% |
| TGTTATCTACAGAGATCAAA+GGG | + | chr5_4:20471799-20471818 | None:intergenic | 30.0% | |
| ATGTTATCTACAGAGATCAA+AGG | + | chr5_4:20471800-20471819 | None:intergenic | 30.0% | |
| TTCAATGTAAGCATATGTGT+CGG | + | chr5_4:20471977-20471996 | None:intergenic | 30.0% | |
| !!! | TTTTAAGTTGTTTTAGTGGC+AGG | - | chr5_4:20472080-20472099 | Msa0842970:intron | 30.0% |
| !! | TTTGATTTTGTTCAGTATCG+AGG | + | chr5_4:20472296-20472315 | None:intergenic | 30.0% |
| GCACATAGATATACATTGAT+TGG | + | chr5_4:20472320-20472339 | None:intergenic | 30.0% | |
| ATTTCATAATTCCAATGACG+AGG | - | chr5_4:20472694-20472713 | Msa0842970:intron | 30.0% | |
| AGATTCGTTATCTGAATTTG+TGG | + | chr5_4:20472911-20472930 | None:intergenic | 30.0% | |
| ! | ATAGGTTTTACAACACTGTT+GGG | - | chr5_4:20473168-20473187 | Msa0842970:intron | 30.0% |
| !! | TTCTATAATTAGCCTTATGG+AGG | - | chr5_4:20473195-20473214 | Msa0842970:CDS | 30.0% |
| !! | TAAATAATTTTCAAGGGCAG+TGG | + | chr5_4:20473221-20473240 | None:intergenic | 30.0% |
| AGAAAATACAGAAAAGGATC+TGG | - | chr5_4:20473305-20473324 | Msa0842970:intron | 30.0% | |
| ! | AAGAGTACATACATAAGAGA+GGG | + | chr5_4:20473577-20473596 | None:intergenic | 30.0% |
| TGATGAGTTTAACGAAATCA+TGG | - | chr5_4:20473723-20473742 | Msa0842970:CDS | 30.0% | |
| TAGATATAAGTCAAACCAGT+AGG | + | chr5_4:20474337-20474356 | None:intergenic | 30.0% | |
| CAAATGTTTAGAAAAGCGAA+TGG | + | chr5_4:20474361-20474380 | None:intergenic | 30.0% | |
| ! | ACATGAAACAACTTTGAGAA+GGG | + | chr5_4:20474392-20474411 | None:intergenic | 30.0% |
| ! | TCAAAGTTGTTTCATGTCAT+CGG | - | chr5_4:20474395-20474414 | Msa0842970:intron | 30.0% |
| ! | GTAGTAGTTGATATCTTCAA+AGG | - | chr5_4:20474580-20474599 | Msa0842970:intron | 30.0% |
| ATCAACCTAACGATTAAAAC+TGG | - | chr5_4:20474651-20474670 | Msa0842970:intron | 30.0% | |
| !! | TTATGCCAGTTTTAATCGTT+AGG | + | chr5_4:20474659-20474678 | None:intergenic | 30.0% |
| AAGACAAGTATTATACCTTG+AGG | + | chr5_4:20474761-20474780 | None:intergenic | 30.0% | |
| ATCTAGAGGAAAATATAAGC+AGG | + | chr5_4:20474866-20474885 | None:intergenic | 30.0% | |
| ! | TTTGAAATAGGCTTAAACTG+TGG | + | chr5_4:20474924-20474943 | None:intergenic | 30.0% |
| AAGCCTATTTCAAAATGCTA+TGG | - | chr5_4:20474930-20474949 | Msa0842970:intron | 30.0% | |
| ! | ATTGGAGTTTTTGTACACAT+TGG | + | chr5_4:20475148-20475167 | None:intergenic | 30.0% |
| ! | ATCTTTGATTTACGCTAACA+AGG | - | chr5_4:20475180-20475199 | Msa0842970:intron | 30.0% |
| AGATCTTCTATATCGACAAA+TGG | + | chr5_4:20475276-20475295 | None:intergenic | 30.0% | |
| TTTGTCGATATAGAAGATCT+AGG | - | chr5_4:20475276-20475295 | Msa0842970:intron | 30.0% | |
| GTAACATCACTATCTCATCA+TGG | - | chr5_4:20471030-20471049 | Msa0842970:three_prime_UTR | 35.0% | |
| CAAAAGGCTTCTACATATCA+AGG | - | chr5_4:20471162-20471181 | Msa0842970:three_prime_UTR | 35.0% | |
| ! | CTTTTAGCAATACAACTTGG+GGG | + | chr5_4:20471267-20471286 | None:intergenic | 35.0% |
| ! | CCTTTTAGCAATACAACTTG+GGG | + | chr5_4:20471268-20471287 | None:intergenic | 35.0% |
| ! | CCCTTTTAGCAATACAACTT+GGG | + | chr5_4:20471269-20471288 | None:intergenic | 35.0% |
| CCCAAGTTGTATTGCTAAAA+GGG | - | chr5_4:20471266-20471285 | Msa0842970:three_prime_UTR | 35.0% | |
| ! | ACCCTTTTAGCAATACAACT+TGG | + | chr5_4:20471270-20471289 | None:intergenic | 35.0% |
| AAGTTGTATTGCTAAAAGGG+TGG | - | chr5_4:20471269-20471288 | Msa0842970:three_prime_UTR | 35.0% | |
| CTTGTAGCAAGCAATGAAAT+TGG | - | chr5_4:20471304-20471323 | Msa0842970:three_prime_UTR | 35.0% | |
| TGAAGGAATTATTCCTTGAC+TGG | - | chr5_4:20471359-20471378 | Msa0842970:CDS | 35.0% | |
| GAAGGAATTATTCCTTGACT+GGG | - | chr5_4:20471360-20471379 | Msa0842970:CDS | 35.0% | |
| GTTTAAAAGAGGTTTCTCTC+AGG | - | chr5_4:20471418-20471437 | Msa0842970:CDS | 35.0% | |
| TGATTGCCCTGATATTCAAA+AGG | - | chr5_4:20471485-20471504 | Msa0842970:CDS | 35.0% | |
| TATGAAACACAGACACTTCT+CGG | + | chr5_4:20471727-20471746 | None:intergenic | 35.0% | |
| ! | ACACAAATACTCTTTGGGTT+AGG | - | chr5_4:20471825-20471844 | Msa0842970:intron | 35.0% |
| ATGAAGCACAAACTAAGACA+CGG | + | chr5_4:20472043-20472062 | None:intergenic | 35.0% | |
| ! | TTTTGTTCATCTTGATCCAC+TGG | + | chr5_4:20472853-20472872 | None:intergenic | 35.0% |
| !! | ACAGCTTTTAATTCAGGAGA+TGG | - | chr5_4:20472883-20472902 | Msa0842970:intron | 35.0% |
| TTTAATGTAATCACACGTGC+CGG | + | chr5_4:20473076-20473095 | None:intergenic | 35.0% | |
| ! | CATAGGTTTTACAACACTGT+TGG | - | chr5_4:20473167-20473186 | Msa0842970:intron | 35.0% |
| ! | GTTTTGTGATCATAATGCCA+TGG | + | chr5_4:20473445-20473464 | None:intergenic | 35.0% |
| ! | ATTGCAACAAAGATTAGCTG+AGG | + | chr5_4:20473534-20473553 | None:intergenic | 35.0% |
| ! | CAAGAGTACATACATAAGAG+AGG | + | chr5_4:20473578-20473597 | None:intergenic | 35.0% |
| ATAGAGATTCAGCACATGTT+TGG | - | chr5_4:20473695-20473714 | Msa0842970:CDS | 35.0% | |
| TGAGTTTAACGAAATCATGG+TGG | - | chr5_4:20473726-20473745 | Msa0842970:CDS | 35.0% | |
| !!! | AAGCTCCAAAGTTTAGCTTT+TGG | - | chr5_4:20473765-20473784 | Msa0842970:five_prime_UTR | 35.0% |
| ! | TCTTTCGCTGTCTTCTTTTA+TGG | - | chr5_4:20473850-20473869 | Msa0842970:intron | 35.0% |
| GACTTGTCTTTCAATTATCC+AGG | - | chr5_4:20473931-20473950 | Msa0842970:intron | 35.0% | |
| TCTTTCAATTATCCAGGAGA+AGG | - | chr5_4:20473937-20473956 | Msa0842970:intron | 35.0% | |
| CTTTCAATTATCCAGGAGAA+GGG | - | chr5_4:20473938-20473957 | Msa0842970:intron | 35.0% | |
| GATTAGTGTGGTCATATAGA+GGG | + | chr5_4:20473966-20473985 | None:intergenic | 35.0% | |
| TGATTAGTGTGGTCATATAG+AGG | + | chr5_4:20473967-20473986 | None:intergenic | 35.0% | |
| AATCATACCAAAGCAGGAAT+CGG | - | chr5_4:20473982-20474001 | Msa0842970:intron | 35.0% | |
| CTTTCCATATTGCAAGTCTT+AGG | - | chr5_4:20474234-20474253 | Msa0842970:intron | 35.0% | |
| ! | AAGCTCACACTGATTAACAT+AGG | + | chr5_4:20474301-20474320 | None:intergenic | 35.0% |
| TTAGCAATAGTAGTTCCTAC+TGG | - | chr5_4:20474319-20474338 | Msa0842970:intron | 35.0% | |
| ! | GACATGAAACAACTTTGAGA+AGG | + | chr5_4:20474393-20474412 | None:intergenic | 35.0% |
| ATAAAGTTGGATCAATCACC+TGG | + | chr5_4:20474446-20474465 | None:intergenic | 35.0% | |
| !! | ACTGATGAAGTTGATGATAG+TGG | + | chr5_4:20474485-20474504 | None:intergenic | 35.0% |
| CAGAATTCTTATTGACACCA+TGG | - | chr5_4:20474545-20474564 | Msa0842970:intron | 35.0% | |
| ! | TTATACCTTGAGGTATCAGT+TGG | + | chr5_4:20474751-20474770 | None:intergenic | 35.0% |
| TACTTAGCATCTACATCTAG+AGG | + | chr5_4:20474880-20474899 | None:intergenic | 35.0% | |
| CTAGTTGTATGTTCTTTCTC+AGG | - | chr5_4:20475001-20475020 | Msa0842970:intron | 35.0% | |
| CTTAGAATATCCATACCATC+CGG | + | chr5_4:20475054-20475073 | None:intergenic | 35.0% | |
| ! | GGATATTCTAAGAAGTTGTC+CGG | - | chr5_4:20475062-20475081 | Msa0842970:intron | 35.0% |
| ATGTGTGCTATATCCATTGT+GGG | + | chr5_4:20475227-20475246 | None:intergenic | 35.0% | |
| AATGTGTGCTATATCCATTG+TGG | + | chr5_4:20475228-20475247 | None:intergenic | 35.0% | |
| ATAGCACACATTTGTTTCCA+CGG | - | chr5_4:20475236-20475255 | Msa0842970:intron | 35.0% | |
| GTCAAATGGCGAATACATAT+TGG | + | chr5_4:20475327-20475346 | None:intergenic | 35.0% | |
| !! | TGTTTGTTTTCACGGTCAAA+TGG | + | chr5_4:20475341-20475360 | None:intergenic | 35.0% |
| ATTTGACCGTGAAAACAAAC+AGG | - | chr5_4:20475340-20475359 | Msa0842970:intron | 35.0% | |
| !! | AACAAGCCTGTTTGTTTTCA+CGG | + | chr5_4:20475349-20475368 | None:intergenic | 35.0% |
| ATTTCACACCGAAAGACATG+CGG | + | chr5_4:20471060-20471079 | None:intergenic | 40.0% | |
| GTGAAATGACACGATCCTTA+AGG | - | chr5_4:20471073-20471092 | Msa0842970:three_prime_UTR | 40.0% | |
| CTTTGAATGAACCTGCCTTA+AGG | + | chr5_4:20471091-20471110 | None:intergenic | 40.0% | |
| CTTAAGGCAGGTTCATTCAA+AGG | - | chr5_4:20471089-20471108 | Msa0842970:three_prime_UTR | 40.0% | |
| CCCCAAGTTGTATTGCTAAA+AGG | - | chr5_4:20471265-20471284 | Msa0842970:three_prime_UTR | 40.0% | |
| ! | ATGAAATTGGTGCTCTTCTG+TGG | - | chr5_4:20471317-20471336 | Msa0842970:exon | 40.0% |
| ! | TGAAATTGGTGCTCTTCTGT+GGG | - | chr5_4:20471318-20471337 | Msa0842970:exon | 40.0% |
| ATTCTCGTTTAACCCAGTCA+AGG | + | chr5_4:20471375-20471394 | None:intergenic | 40.0% | |
| TCATCTATGATTCACGGACA+CGG | - | chr5_4:20471586-20471605 | Msa0842970:intron | 40.0% | |
| !! | TCTTTTTCCTTTAGAGGGGT+GGG | + | chr5_4:20471763-20471782 | None:intergenic | 40.0% |
| !! | TTCTTTTTCCTTTAGAGGGG+TGG | + | chr5_4:20471764-20471783 | None:intergenic | 40.0% |
| !! | CATATGTGTCGGTGTTGTAT+TGG | + | chr5_4:20471886-20471905 | None:intergenic | 40.0% |
| TGAAGCACAAACTAAGACAC+GGG | + | chr5_4:20472042-20472061 | None:intergenic | 40.0% | |
| TTCACGCGACTCATCATAAA+TGG | + | chr5_4:20472370-20472389 | None:intergenic | 40.0% | |
| CAGTTAGCTGCACAAAGTTT+AGG | + | chr5_4:20472405-20472424 | None:intergenic | 40.0% | |
| GATGCAGAGAGTCATTGATA+AGG | - | chr5_4:20472660-20472679 | Msa0842970:intron | 40.0% | |
| TCATTGATAAGGAAGCAGCT+GGG | - | chr5_4:20472671-20472690 | Msa0842970:intron | 40.0% | |
| TACGATATGTACATCACGCA+CGG | + | chr5_4:20472947-20472966 | None:intergenic | 40.0% | |
| TGTGTTCAGACATGCAATAG+TGG | + | chr5_4:20472974-20472993 | None:intergenic | 40.0% | |
| ! | GCACTGACAATTGAGATTGA+AGG | - | chr5_4:20473039-20473058 | Msa0842970:intron | 40.0% |
| TTTCCAGTCAATGCGGTTAA+TGG | - | chr5_4:20473260-20473279 | Msa0842970:intron | 40.0% | |
| GAAAAGGATCTGGAAACATG+TGG | - | chr5_4:20473315-20473334 | Msa0842970:intron | 40.0% | |
| CTGGAAACATGTGGTATACT+TGG | - | chr5_4:20473324-20473343 | Msa0842970:intron | 40.0% | |
| !! | TAAATTGGCTTGTGTGCTGA+AGG | - | chr5_4:20473388-20473407 | Msa0842970:intron | 40.0% |
| TGTGATCATAATGCCATGGA+TGG | + | chr5_4:20473441-20473460 | None:intergenic | 40.0% | |
| CTACTTCATTTGATGCTGCT+AGG | - | chr5_4:20473613-20473632 | Msa0842970:CDS | 40.0% | |
| !! | GTTTTGATCGATGGCAAGAT+TGG | + | chr5_4:20473819-20473838 | None:intergenic | 40.0% |
| !!! | TGAGTGCATGTTTTGATCGA+TGG | + | chr5_4:20473828-20473847 | None:intergenic | 40.0% |
| TGGATGCGAATCAAAGAACT+TGG | - | chr5_4:20473870-20473889 | Msa0842970:intron | 40.0% | |
| CTGCTTTGGTATGATTAGTG+TGG | + | chr5_4:20473978-20473997 | None:intergenic | 40.0% | |
| CACACTAATCATACCAAAGC+AGG | - | chr5_4:20473976-20473995 | Msa0842970:intron | 40.0% | |
| !! | CACATGTTTTTAACAGGGCT+TGG | - | chr5_4:20474073-20474092 | Msa0842970:intron | 40.0% |
| ACAGTGTAATGCCACAAATG+AGG | - | chr5_4:20474134-20474153 | Msa0842970:intron | 40.0% | |
| GAAAACTTCCTCCTCATTTG+TGG | + | chr5_4:20474148-20474167 | None:intergenic | 40.0% | |
| GAAAGATCCCTTTATCCTGT+TGG | - | chr5_4:20474180-20474199 | Msa0842970:intron | 40.0% | |
| GATCCATCCAACAGGATAAA+GGG | + | chr5_4:20474190-20474209 | None:intergenic | 40.0% | |
| GTTGCCTAAGACTTGCAATA+TGG | + | chr5_4:20474241-20474260 | None:intergenic | 40.0% | |
| ! | AAGTTGTTTCATGTCATCGG+TGG | - | chr5_4:20474398-20474417 | Msa0842970:intron | 40.0% |
| !! | TTTTCAGGCAATGATTCCTG+AGG | - | chr5_4:20474705-20474724 | Msa0842970:intron | 40.0% |
| AATACAATCGCAAATGCCTC+AGG | + | chr5_4:20474724-20474743 | None:intergenic | 40.0% | |
| ! | TGAGGCATTTGCGATTGTAT+TGG | - | chr5_4:20474723-20474742 | Msa0842970:intron | 40.0% |
| GAAAATTGGCTGCAACTACA+AGG | + | chr5_4:20474796-20474815 | None:intergenic | 40.0% | |
| !! | CCATTATCTGGTTCTTTGTG+TGG | + | chr5_4:20475102-20475121 | None:intergenic | 40.0% |
| CCACACAAAGAACCAGATAA+TGG | - | chr5_4:20475099-20475118 | Msa0842970:intron | 40.0% | |
| GCGAATACATATTGGACTCA+TGG | + | chr5_4:20475319-20475338 | None:intergenic | 40.0% | |
| TTTCACACCGAAAGACATGC+GGG | + | chr5_4:20471059-20471078 | None:intergenic | 45.0% | |
| AATGACACGATCCTTAAGGC+AGG | - | chr5_4:20471077-20471096 | Msa0842970:three_prime_UTR | 45.0% | |
| CATCTATGATTCACGGACAC+GGG | - | chr5_4:20471587-20471606 | Msa0842970:intron | 45.0% | |
| !! | CATATGTGTTGGTGCTGTGT+TGG | - | chr5_4:20471664-20471683 | Msa0842970:intron | 45.0% |
| ACACAGACACTTCTCGGATT+AGG | + | chr5_4:20471721-20471740 | None:intergenic | 45.0% | |
| CACGATAAGTATCCGACACT+GGG | + | chr5_4:20471856-20471875 | None:intergenic | 45.0% | |
| ACACGATAAGTATCCGACAC+TGG | + | chr5_4:20471857-20471876 | None:intergenic | 45.0% | |
| GTCATTGATAAGGAAGCAGC+TGG | - | chr5_4:20472670-20472689 | Msa0842970:intron | 45.0% | |
| GACTACTCAAACCTCGTCAT+TGG | + | chr5_4:20472708-20472727 | None:intergenic | 45.0% | |
| ! | TAGTCGTTGCTGGTTACAAC+TGG | - | chr5_4:20472723-20472742 | Msa0842970:intron | 45.0% |
| !! | TGAAGCACCGTCATAGACAT+CGG | + | chr5_4:20473149-20473168 | None:intergenic | 45.0% |
| TGTCTATGACGGTGCTTCAT+AGG | - | chr5_4:20473150-20473169 | Msa0842970:intron | 45.0% | |
| !! | TTAGATGCCGATTCCTGCTT+TGG | + | chr5_4:20473992-20474011 | None:intergenic | 45.0% |
| GTGTAATGCCACAAATGAGG+AGG | - | chr5_4:20474137-20474156 | Msa0842970:intron | 45.0% | |
| GATCCCTTTATCCTGTTGGA+TGG | - | chr5_4:20474184-20474203 | Msa0842970:intron | 45.0% | |
| GGATCCATCCAACAGGATAA+AGG | + | chr5_4:20474191-20474210 | None:intergenic | 45.0% | |
| CATACATGGATCCATCCAAC+AGG | + | chr5_4:20474198-20474217 | None:intergenic | 45.0% | |
| GCACACTCAATATTCCTACC+AGG | - | chr5_4:20474425-20474444 | Msa0842970:intron | 45.0% | |
| AGTTGGATCAATCACCTGGT+AGG | + | chr5_4:20474442-20474461 | None:intergenic | 45.0% | |
| ATGTTCTTTCTCAGGAGCTG+TGG | - | chr5_4:20475009-20475028 | Msa0842970:intron | 45.0% | |
| TCTCTTTCGCCTAACTGAAC+CGG | - | chr5_4:20475032-20475051 | Msa0842970:intron | 45.0% | |
| ! | TTCTAAGAAGTTGTCCGGAG+AGG | - | chr5_4:20475067-20475086 | Msa0842970:intron | 45.0% |
| TCTAAGAAGTTGTCCGGAGA+GGG | - | chr5_4:20475068-20475087 | Msa0842970:intron | 45.0% | |
| TACACAGGGTTGCCATTATC+TGG | + | chr5_4:20475114-20475133 | None:intergenic | 45.0% | |
| ATGGAGTCCCGCATGTCTTT+CGG | - | chr5_4:20471049-20471068 | Msa0842970:three_prime_UTR | 50.0% | |
| CATTGTTCCCACCCCTCTAA+AGG | - | chr5_4:20471753-20471772 | Msa0842970:intron | 50.0% | |
| ACAAACTAAGACACGGGCAC+CGG | + | chr5_4:20472036-20472055 | None:intergenic | 50.0% | |
| GAGGTTTGAGTAGTCGTTGC+TGG | - | chr5_4:20472713-20472732 | Msa0842970:intron | 50.0% | |
| ! | ATTGAAGGTGCATCCGACAC+CGG | - | chr5_4:20473054-20473073 | Msa0842970:intron | 50.0% |
| ACCGTCATAGACATCGGACA+CGG | + | chr5_4:20473143-20473162 | None:intergenic | 50.0% | |
| ! | CCTCCATTAACCGCATTGAC+TGG | + | chr5_4:20473266-20473285 | None:intergenic | 50.0% |
| CCAGTCAATGCGGTTAATGG+AGG | - | chr5_4:20473263-20473282 | Msa0842970:intron | 50.0% | |
| TATAGAGGGTTCCCTTCTCC+TGG | + | chr5_4:20473952-20473971 | None:intergenic | 50.0% | |
| TGGCACCAACTGATACCTCA+AGG | - | chr5_4:20474743-20474762 | Msa0842970:intron | 50.0% | |
| TTTCGCCTAACTGAACCGGA+TGG | - | chr5_4:20475036-20475055 | Msa0842970:intron | 50.0% | |
| CCATACCATCCGGTTCAGTT+AGG | + | chr5_4:20475044-20475063 | None:intergenic | 50.0% | |
| CCTAACTGAACCGGATGGTA+TGG | - | chr5_4:20475041-20475060 | Msa0842970:intron | 50.0% | |
| CTAAGAAGTTGTCCGGAGAG+GGG | - | chr5_4:20475069-20475088 | Msa0842970:intron | 50.0% | |
| TGTGGATGAAATCCCCTCTC+CGG | + | chr5_4:20475084-20475103 | None:intergenic | 50.0% | |
| TGGTGAGAGTCATATCACCG+TGG | + | chr5_4:20475256-20475275 | None:intergenic | 50.0% | |
| TGTCCTGGAAGCCAGACACA+CGG | + | chr5_4:20471696-20471715 | None:intergenic | 55.0% | |
| ! | TTCTCGGATTAGGCGTGTCC+TGG | + | chr5_4:20471711-20471730 | None:intergenic | 55.0% |
| GGTTAGGTGTGTCCCAGTGT+CGG | - | chr5_4:20471841-20471860 | Msa0842970:intron | 55.0% | |
| ACACAACACAGTGCAGGGGA+AGG | + | chr5_4:20472826-20472845 | None:intergenic | 55.0% | |
| TTCCCCTGCACTGTGTTGTG+TGG | - | chr5_4:20472825-20472844 | Msa0842970:intron | 55.0% | |
| CTCCACACAACACAGTGCAG+GGG | + | chr5_4:20472830-20472849 | None:intergenic | 55.0% | |
| GCTCCACACAACACAGTGCA+GGG | + | chr5_4:20472831-20472850 | None:intergenic | 55.0% | |
| ACTGTGTTGTGTGGAGCCAG+TGG | - | chr5_4:20472834-20472853 | Msa0842970:intron | 55.0% | |
| ! | GTAATCACACGTGCCGGTGT+CGG | + | chr5_4:20473070-20473089 | None:intergenic | 55.0% |
| GCCGTGTCCGATGTCTATGA+CGG | - | chr5_4:20473139-20473158 | Msa0842970:intron | 55.0% | |
| TGGAGCAGTGCTCGTACACA+GGG | + | chr5_4:20475128-20475147 | None:intergenic | 55.0% | |
| TTGGAGCAGTGCTCGTACAC+AGG | + | chr5_4:20475129-20475148 | None:intergenic | 55.0% | |
| CAGCGCATACTGTCCCACAA+TGG | - | chr5_4:20475211-20475230 | Msa0842970:intron | 55.0% | |
| GTTGGACACACCCGTGTGTC+TGG | - | chr5_4:20471682-20471701 | Msa0842970:intron | 60.0% | |
| GTCCTGGAAGCCAGACACAC+GGG | + | chr5_4:20471695-20471714 | None:intergenic | 60.0% | |
| GGTGTCAACGTGTCCGTGTC+CGG | - | chr5_4:20472014-20472033 | Msa0842970:intron | 60.0% | |
| !! | TAAGACACGGGCACCGGACA+CGG | + | chr5_4:20472030-20472049 | None:intergenic | 60.0% |
| GGCTCCACACAACACAGTGC+AGG | + | chr5_4:20472832-20472851 | None:intergenic | 60.0% | |
| CAAGGGCAGTGGCCTCCATA+AGG | + | chr5_4:20473210-20473229 | None:intergenic | 60.0% | |
| ! | CACCCGTGTGTCTGGCTTCC+AGG | - | chr5_4:20471690-20471709 | Msa0842970:intron | 65.0% |
| TGCAGGGGAAGGCGAGGACT+TGG | + | chr5_4:20472815-20472834 | None:intergenic | 65.0% | |
| ACACAGTGCAGGGGAAGGCG+AGG | + | chr5_4:20472821-20472840 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 20471004 | 20475529 | 20471004 | ID=Msa0842970;Name=Msa0842970 |
| chr5_4 | mRNA | 20471004 | 20475529 | 20471004 | ID=Msa0842970-mRNA-1;Parent=Msa0842970;Name=Msa0842970-mRNA-1;_AED=0.21;_eAED=0.21;_QI=288|1|1|1|0.71|0.75|8|332|235 |
| chr5_4 | exon | 20471004 | 20471510 | 20471004 | ID=Msa0842970-mRNA-1:exon:8470;Parent=Msa0842970-mRNA-1 |
| chr5_4 | exon | 20471769 | 20471821 | 20471769 | ID=Msa0842970-mRNA-1:exon:8469;Parent=Msa0842970-mRNA-1 |
| chr5_4 | exon | 20472087 | 20472149 | 20472087 | ID=Msa0842970-mRNA-1:exon:8468;Parent=Msa0842970-mRNA-1 |
| chr5_4 | exon | 20472321 | 20472395 | 20472321 | ID=Msa0842970-mRNA-1:exon:8467;Parent=Msa0842970-mRNA-1 |
| chr5_4 | exon | 20472518 | 20472580 | 20472518 | ID=Msa0842970-mRNA-1:exon:8466;Parent=Msa0842970-mRNA-1 |
| chr5_4 | exon | 20473177 | 20473266 | 20473177 | ID=Msa0842970-mRNA-1:exon:8465;Parent=Msa0842970-mRNA-1 |
| chr5_4 | exon | 20473570 | 20473866 | 20473570 | ID=Msa0842970-mRNA-1:exon:8464;Parent=Msa0842970-mRNA-1 |
| chr5_4 | exon | 20475350 | 20475529 | 20475350 | ID=Msa0842970-mRNA-1:exon:8463;Parent=Msa0842970-mRNA-1 |
| chr5_4 | five_prime_UTR | 20475350 | 20475529 | 20475350 | ID=Msa0842970-mRNA-1:five_prime_utr;Parent=Msa0842970-mRNA-1 |
| chr5_4 | five_prime_UTR | 20473759 | 20473866 | 20473759 | ID=Msa0842970-mRNA-1:five_prime_utr;Parent=Msa0842970-mRNA-1 |
| chr5_4 | CDS | 20473570 | 20473758 | 20473570 | ID=Msa0842970-mRNA-1:cds;Parent=Msa0842970-mRNA-1 |
| chr5_4 | CDS | 20473177 | 20473266 | 20473177 | ID=Msa0842970-mRNA-1:cds;Parent=Msa0842970-mRNA-1 |
| chr5_4 | CDS | 20472518 | 20472580 | 20472518 | ID=Msa0842970-mRNA-1:cds;Parent=Msa0842970-mRNA-1 |
| chr5_4 | CDS | 20472321 | 20472395 | 20472321 | ID=Msa0842970-mRNA-1:cds;Parent=Msa0842970-mRNA-1 |
| chr5_4 | CDS | 20472087 | 20472149 | 20472087 | ID=Msa0842970-mRNA-1:cds;Parent=Msa0842970-mRNA-1 |
| chr5_4 | CDS | 20471769 | 20471821 | 20471769 | ID=Msa0842970-mRNA-1:cds;Parent=Msa0842970-mRNA-1 |
| chr5_4 | CDS | 20471336 | 20471510 | 20471336 | ID=Msa0842970-mRNA-1:cds;Parent=Msa0842970-mRNA-1 |
| chr5_4 | three_prime_UTR | 20471004 | 20471335 | 20471004 | ID=Msa0842970-mRNA-1:three_prime_utr;Parent=Msa0842970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
