Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857270 | ACZ37071.1 | 100.000 | 127 | 0 | 0 | 1 | 127 | 1 | 127 | 2.43e-87 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857270 | sp|Q38879|TRXH2_ARATH | 52.252 | 111 | 53 | 0 | 16 | 126 | 22 | 132 | 1.83e-43 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857270 | D8L5E2 | 100.000 | 127 | 0 | 0 | 1 | 127 | 1 | 127 | 1.16e-87 | 259 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa0857270 | 0.810121 | 1.349361e-50 | -8.615850e-47 |
| Msa0017710 | Msa0857270 | 0.801554 | 8.524353e-49 | -8.615850e-47 |
| Msa0025570 | Msa0857270 | 0.817890 | 2.608366e-52 | -8.615850e-47 |
| Msa0060410 | Msa0857270 | 0.800047 | 1.730564e-48 | -8.615850e-47 |
| Msa0062190 | Msa0857270 | 0.800936 | 1.140810e-48 | -8.615850e-47 |
| Msa0072180 | Msa0857270 | 0.808672 | 2.760540e-50 | -8.615850e-47 |
| Msa0073110 | Msa0857270 | 0.829650 | 4.570997e-55 | -8.615850e-47 |
| Msa0106540 | Msa0857270 | 0.821144 | 4.720681e-53 | -8.615850e-47 |
| Msa0120450 | Msa0857270 | 0.822354 | 2.477097e-53 | -8.615850e-47 |
| Msa0604190 | Msa0857270 | 0.833367 | 5.556375e-56 | -8.615850e-47 |
| Msa0606150 | Msa0857270 | 0.806761 | 7.030937e-50 | -8.615850e-47 |
| Msa0614960 | Msa0857270 | 0.800273 | 1.556933e-48 | -8.615850e-47 |
| Msa0629160 | Msa0857270 | 0.807195 | 5.689908e-50 | -8.615850e-47 |
| Msa0645390 | Msa0857270 | 0.829508 | 4.948908e-55 | -8.615850e-47 |
| Msa0682110 | Msa0857270 | 0.809325 | 2.000911e-50 | -8.615850e-47 |
| Msa0682160 | Msa0857270 | 0.818574 | 1.825699e-52 | -8.615850e-47 |
| Msa0685020 | Msa0857270 | 0.814096 | 1.833113e-51 | -8.615850e-47 |
| Msa0686040 | Msa0857270 | 0.803125 | 4.046790e-49 | -8.615850e-47 |
| Msa0695760 | Msa0857270 | 0.805627 | 1.218263e-49 | -8.615850e-47 |
| Msa0699170 | Msa0857270 | 0.808621 | 2.830826e-50 | -8.615850e-47 |
| Msa0707330 | Msa0857270 | 0.828170 | 1.043502e-54 | -8.615850e-47 |
| Msa0725580 | Msa0857270 | 0.803230 | 3.849574e-49 | -8.615850e-47 |
| Msa0732970 | Msa0857270 | 0.804934 | 1.701949e-49 | -8.615850e-47 |
| Msa0733560 | Msa0857270 | 0.821811 | 3.310135e-53 | -8.615850e-47 |
| Msa0758990 | Msa0857270 | 0.801484 | 8.808832e-49 | -8.615850e-47 |
| Msa0765060 | Msa0857270 | 0.864775 | 9.535708e-65 | -8.615850e-47 |
| Msa0765090 | Msa0857270 | 0.835731 | 1.414645e-56 | -8.615850e-47 |
| Msa0773960 | Msa0857270 | 0.821306 | 4.329919e-53 | -8.615850e-47 |
| Msa0804170 | Msa0857270 | 0.807649 | 4.558700e-50 | -8.615850e-47 |
| Msa0833200 | Msa0857270 | -0.803653 | 3.146203e-49 | -8.615850e-47 |
| Msa0838210 | Msa0857270 | 0.813270 | 2.785910e-51 | -8.615850e-47 |
| Msa0841520 | Msa0857270 | 0.820903 | 5.363778e-53 | -8.615850e-47 |
| Msa0121320 | Msa0857270 | 0.801066 | 1.073158e-48 | -8.615850e-47 |
| Msa0132080 | Msa0857270 | -0.806975 | 6.333762e-50 | -8.615850e-47 |
| Msa0148670 | Msa0857270 | 0.804569 | 2.028391e-49 | -8.615850e-47 |
| Msa0166180 | Msa0857270 | 0.800248 | 1.575205e-48 | -8.615850e-47 |
| Msa0198990 | Msa0857270 | 0.810823 | 9.516487e-51 | -8.615850e-47 |
| Msa0211460 | Msa0857270 | 0.814820 | 1.268114e-51 | -8.615850e-47 |
| Msa0234170 | Msa0857270 | 0.802929 | 4.442939e-49 | -8.615850e-47 |
| Msa0386880 | Msa0857270 | 0.819371 | 1.202661e-52 | -8.615850e-47 |
| Msa0386910 | Msa0857270 | 0.800620 | 1.323219e-48 | -8.615850e-47 |
| Msa0388210 | Msa0857270 | 0.800972 | 1.121288e-48 | -8.615850e-47 |
| Msa0401500 | Msa0857270 | 0.800526 | 1.382669e-48 | -8.615850e-47 |
| Msa0403740 | Msa0857270 | -0.809344 | 1.981963e-50 | -8.615850e-47 |
| Msa0419570 | Msa0857270 | 0.822206 | 2.680988e-53 | -8.615850e-47 |
| Msa0456450 | Msa0857270 | -0.804028 | 2.628759e-49 | -8.615850e-47 |
| Msa0457070 | Msa0857270 | -0.805810 | 1.115217e-49 | -8.615850e-47 |
| Msa0467170 | Msa0857270 | 0.805405 | 1.356198e-49 | -8.615850e-47 |
| Msa0467330 | Msa0857270 | 0.808631 | 2.817253e-50 | -8.615850e-47 |
| Msa0240590 | Msa0857270 | -0.800510 | 1.393368e-48 | -8.615850e-47 |
| Msa0241750 | Msa0857270 | 0.809206 | 2.121922e-50 | -8.615850e-47 |
| Msa0279810 | Msa0857270 | 0.815637 | 8.350119e-52 | -8.615850e-47 |
| Msa0298690 | Msa0857270 | 0.811933 | 5.464322e-51 | -8.615850e-47 |
| Msa0318490 | Msa0857270 | 0.819434 | 1.163847e-52 | -8.615850e-47 |
| Msa0319220 | Msa0857270 | 0.822234 | 2.642326e-53 | -8.615850e-47 |
| Msa0328870 | Msa0857270 | 0.803423 | 3.510707e-49 | -8.615850e-47 |
| Msa0354600 | Msa0857270 | 0.831790 | 1.367295e-55 | -8.615850e-47 |
| Msa0364030 | Msa0857270 | -0.808231 | 3.428061e-50 | -8.615850e-47 |
| Msa0540640 | Msa0857270 | 0.800204 | 1.608082e-48 | -8.615850e-47 |
| Msa0567330 | Msa0857270 | 0.835100 | 2.041886e-56 | -8.615850e-47 |
| Msa0567570 | Msa0857270 | 0.830033 | 3.686887e-55 | -8.615850e-47 |
| Msa0576320 | Msa0857270 | 0.838128 | 3.456796e-57 | -8.615850e-47 |
| Msa0844360 | Msa0857270 | 0.803853 | 2.859112e-49 | -8.615850e-47 |
| Msa0857270 | Msa0930770 | 0.805920 | 1.057426e-49 | -8.615850e-47 |
| Msa0857270 | Msa0935840 | -0.812590 | 3.926761e-51 | -8.615850e-47 |
| Msa0857270 | Msa0964400 | -0.802345 | 5.863809e-49 | -8.615850e-47 |
| Msa0857270 | Msa0973010 | -0.817541 | 3.125801e-52 | -8.615850e-47 |
| Msa0857270 | Msa0981670 | 0.800585 | 1.345428e-48 | -8.615850e-47 |
| Msa0857270 | Msa1001120 | 0.817745 | 2.812341e-52 | -8.615850e-47 |
| Msa0857270 | Msa1002820 | 0.802297 | 5.997395e-49 | -8.615850e-47 |
| Msa0857270 | Msa1036260 | -0.804632 | 1.968460e-49 | -8.615850e-47 |
| Msa0857270 | Msa1041250 | 0.807248 | 5.545117e-50 | -8.615850e-47 |
| Msa0857270 | Msa1048400 | 0.806578 | 7.683539e-50 | -8.615850e-47 |
| Msa0857270 | Msa1056890 | 0.824056 | 9.927188e-54 | -8.615850e-47 |
| Msa0857270 | Msa1062060 | 0.808626 | 2.823502e-50 | -8.615850e-47 |
| Msa0857270 | Msa1068730 | 0.831261 | 1.845185e-55 | -8.615850e-47 |
| Msa0857270 | Msa1108560 | 0.814919 | 1.205630e-51 | -8.615850e-47 |
| Msa0857270 | Msa1115980 | 0.806602 | 7.596894e-50 | -8.615850e-47 |
| Msa0857270 | Msa1122710 | -0.804151 | 2.478326e-49 | -8.615850e-47 |
| Msa0857270 | Msa1164450 | 0.806930 | 6.475713e-50 | -8.615850e-47 |
| Msa0857270 | Msa1181090 | 0.800840 | 1.193225e-48 | -8.615850e-47 |
| Msa0857270 | Msa1184680 | 0.821086 | 4.867746e-53 | -8.615850e-47 |
| Msa0857270 | Msa1191530 | -0.817572 | 3.076128e-52 | -8.615850e-47 |
| Msa0857270 | Msa1192360 | 0.810896 | 9.177765e-51 | -8.615850e-47 |
| Msa0857270 | Msa1201760 | 0.821220 | 4.534375e-53 | -8.615850e-47 |
| Msa0857270 | Msa1202800 | 0.820872 | 5.452035e-53 | -8.615850e-47 |
| Msa0857270 | Msa1217890 | 0.826169 | 3.143073e-54 | -8.615850e-47 |
| Msa0857270 | Msa1223960 | 0.803682 | 3.102042e-49 | -8.615850e-47 |
| Msa0857270 | Msa1223990 | 0.807549 | 4.788243e-50 | -8.615850e-47 |
| Msa0857270 | Msa1254670 | 0.802348 | 5.854627e-49 | -8.615850e-47 |
| Msa0857270 | Msa1263110 | 0.815647 | 8.306192e-52 | -8.615850e-47 |
| Msa0857270 | Msa1284020 | 0.814591 | 1.425417e-51 | -8.615850e-47 |
| Msa0857270 | Msa1288070 | 0.818018 | 2.439488e-52 | -8.615850e-47 |
| Msa0857270 | Msa1295650 | 0.804632 | 1.967783e-49 | -8.615850e-47 |
| Msa0857270 | Msa1311370 | 0.812177 | 4.832945e-51 | -8.615850e-47 |
| Msa0857270 | Msa1322980 | 0.802583 | 5.237924e-49 | -8.615850e-47 |
| Msa0857270 | Msa1328280 | 0.825043 | 5.810852e-54 | -8.615850e-47 |
| Msa0857270 | Msa1342360 | -0.803820 | 2.904753e-49 | -8.615850e-47 |
| Msa0857270 | Msa1361980 | 0.819131 | 1.364064e-52 | -8.615850e-47 |
| Msa0857270 | Msa1365820 | 0.800143 | 1.655219e-48 | -8.615850e-47 |
| Msa0857270 | Msa1366480 | 0.802530 | 5.369363e-49 | -8.615850e-47 |
| Msa0857270 | Msa1368390 | 0.803505 | 3.375533e-49 | -8.615850e-47 |
| Msa0857270 | Msa1368420 | 0.800830 | 1.198763e-48 | -8.615850e-47 |
| Msa0857270 | Msa1383220 | 0.802321 | 5.928861e-49 | -8.615850e-47 |
| Msa0857270 | Msa1405830 | 0.819666 | 1.030445e-52 | -8.615850e-47 |
| Msa0857270 | Msa1407810 | 0.831333 | 1.771384e-55 | -8.615850e-47 |
| Msa0857270 | Msa1412330 | -0.802550 | 5.319409e-49 | -8.615850e-47 |
| Msa0857270 | Msa1413020 | 0.802898 | 4.508973e-49 | -8.615850e-47 |
| Msa0857270 | Msa1431030 | 0.800317 | 1.525099e-48 | -8.615850e-47 |
| Msa0857270 | Msa1433360 | 0.832716 | 8.063051e-56 | -8.615850e-47 |
| Msa0857270 | Msa1437780 | 0.831491 | 1.619527e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857270 | MtrunA17_Chr5g0415771 | 99.213 | 127 | 1 | 0 | 1 | 127 | 1 | 127 | 7.55e-91 | 258 |
| Msa0857270 | MtrunA17_Chr5g0415761 | 72.441 | 127 | 34 | 1 | 1 | 126 | 1 | 127 | 1.14e-54 | 167 |
| Msa0857270 | MtrunA17_Chr5g0415741 | 66.667 | 126 | 41 | 1 | 1 | 126 | 1 | 125 | 5.13e-53 | 162 |
| Msa0857270 | MtrunA17_Chr7g0216481 | 60.577 | 104 | 41 | 0 | 23 | 126 | 30 | 133 | 5.72e-45 | 142 |
| Msa0857270 | MtrunA17_Chr3g0142051 | 49.550 | 111 | 56 | 0 | 15 | 125 | 2 | 112 | 3.78e-38 | 125 |
| Msa0857270 | MtrunA17_Chr1g0155721 | 43.750 | 112 | 63 | 0 | 15 | 126 | 2 | 113 | 1.08e-34 | 116 |
| Msa0857270 | MtrunA17_Chr5g0404831 | 44.144 | 111 | 62 | 0 | 15 | 125 | 4 | 114 | 5.43e-34 | 114 |
| Msa0857270 | MtrunA17_Chr8g0393201 | 43.137 | 102 | 58 | 0 | 21 | 122 | 229 | 330 | 1.59e-27 | 103 |
| Msa0857270 | MtrunA17_Chr4g0042051 | 44.340 | 106 | 57 | 2 | 19 | 123 | 10 | 114 | 6.27e-26 | 94.4 |
| Msa0857270 | MtrunA17_Chr2g0280411 | 40.952 | 105 | 62 | 0 | 19 | 123 | 9 | 113 | 1.88e-25 | 93.2 |
| Msa0857270 | MtrunA17_Chr2g0319291 | 35.238 | 105 | 68 | 0 | 19 | 123 | 10 | 114 | 2.64e-23 | 87.4 |
| Msa0857270 | MtrunA17_Chr8g0334481 | 38.710 | 93 | 57 | 0 | 30 | 122 | 37 | 129 | 3.66e-23 | 87.8 |
| Msa0857270 | MtrunA17_Chr7g0245141 | 39.560 | 91 | 55 | 0 | 30 | 120 | 35 | 125 | 3.78e-23 | 87.8 |
| Msa0857270 | MtrunA17_Chr1g0201781 | 38.372 | 86 | 50 | 2 | 40 | 124 | 77 | 160 | 2.02e-19 | 79.0 |
| Msa0857270 | MtrunA17_Chr4g0052481 | 39.024 | 82 | 48 | 1 | 45 | 124 | 85 | 166 | 7.81e-19 | 77.4 |
| Msa0857270 | MtrunA17_Chr7g0249461 | 41.379 | 87 | 50 | 1 | 41 | 126 | 98 | 184 | 5.60e-16 | 70.5 |
| Msa0857270 | MtrunA17_Chr3g0125821 | 37.349 | 83 | 50 | 2 | 44 | 124 | 89 | 171 | 3.52e-15 | 68.2 |
| Msa0857270 | MtrunA17_Chr2g0317731 | 38.554 | 83 | 49 | 2 | 44 | 124 | 89 | 171 | 3.14e-14 | 65.5 |
| Msa0857270 | MtrunA17_Chr8g0360031 | 36.145 | 83 | 51 | 2 | 44 | 124 | 92 | 174 | 1.60e-13 | 63.5 |
| Msa0857270 | MtrunA17_Chr1g0211871 | 34.615 | 78 | 47 | 2 | 40 | 116 | 85 | 159 | 5.53e-13 | 62.4 |
| Msa0857270 | MtrunA17_Chr4g0047431 | 32.500 | 80 | 54 | 0 | 45 | 124 | 25 | 104 | 9.53e-12 | 60.8 |
| Msa0857270 | MtrunA17_Chr4g0044731 | 31.579 | 76 | 51 | 1 | 44 | 118 | 84 | 159 | 5.29e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857270 | AT5G39950.1 | 52.252 | 111 | 53 | 0 | 16 | 126 | 22 | 132 | 1.86e-44 | 142 |
| Msa0857270 | AT1G59730.1 | 43.077 | 130 | 70 | 2 | 1 | 127 | 1 | 129 | 1.21e-37 | 124 |
| Msa0857270 | AT3G51030.1 | 44.144 | 111 | 62 | 0 | 15 | 125 | 2 | 112 | 6.28e-34 | 114 |
| Msa0857270 | AT5G42980.1 | 48.113 | 106 | 55 | 0 | 21 | 126 | 7 | 112 | 3.26e-33 | 112 |
| Msa0857270 | AT1G69880.1 | 48.077 | 104 | 54 | 0 | 21 | 124 | 39 | 142 | 2.82e-32 | 111 |
| Msa0857270 | AT1G19730.1 | 45.536 | 112 | 60 | 1 | 15 | 125 | 2 | 113 | 4.31e-31 | 107 |
| Msa0857270 | AT1G45145.1 | 41.905 | 105 | 61 | 0 | 21 | 125 | 7 | 111 | 2.10e-30 | 105 |
| Msa0857270 | AT3G17880.2 | 39.474 | 114 | 65 | 1 | 13 | 122 | 253 | 366 | 1.60e-25 | 99.0 |
| Msa0857270 | AT3G17880.1 | 39.474 | 114 | 65 | 1 | 13 | 122 | 260 | 373 | 1.67e-25 | 99.4 |
| Msa0857270 | AT1G11530.1 | 39.806 | 103 | 62 | 0 | 21 | 123 | 4 | 106 | 7.71e-24 | 89.4 |
| Msa0857270 | AT3G08710.2 | 41.758 | 91 | 53 | 0 | 30 | 120 | 34 | 124 | 2.54e-23 | 88.6 |
| Msa0857270 | AT3G08710.3 | 41.758 | 91 | 53 | 0 | 30 | 120 | 34 | 124 | 2.54e-23 | 88.6 |
| Msa0857270 | AT3G08710.1 | 41.758 | 91 | 53 | 0 | 30 | 120 | 34 | 124 | 2.54e-23 | 88.6 |
| Msa0857270 | AT3G56420.1 | 38.043 | 92 | 57 | 0 | 29 | 120 | 50 | 141 | 4.60e-23 | 88.2 |
| Msa0857270 | AT3G56420.2 | 38.043 | 92 | 57 | 0 | 29 | 120 | 50 | 141 | 4.60e-23 | 88.2 |
| Msa0857270 | AT3G56420.3 | 38.043 | 92 | 57 | 0 | 29 | 120 | 50 | 141 | 4.60e-23 | 88.2 |
| Msa0857270 | AT2G40790.2 | 39.130 | 92 | 56 | 0 | 29 | 120 | 50 | 141 | 1.78e-19 | 79.0 |
| Msa0857270 | AT2G40790.1 | 39.130 | 92 | 56 | 0 | 29 | 120 | 50 | 141 | 1.78e-19 | 79.0 |
| Msa0857270 | AT1G43560.1 | 41.379 | 87 | 49 | 2 | 40 | 124 | 75 | 161 | 4.92e-19 | 78.2 |
| Msa0857270 | AT1G76760.1 | 38.372 | 86 | 51 | 2 | 40 | 123 | 80 | 165 | 2.36e-18 | 76.6 |
| Msa0857270 | AT5G16400.1 | 42.529 | 87 | 49 | 1 | 41 | 126 | 97 | 183 | 1.77e-17 | 74.7 |
| Msa0857270 | AT2G35010.2 | 40.244 | 82 | 47 | 1 | 45 | 124 | 110 | 191 | 6.90e-17 | 73.2 |
| Msa0857270 | AT2G35010.1 | 40.244 | 82 | 47 | 1 | 45 | 124 | 110 | 191 | 6.90e-17 | 73.2 |
| Msa0857270 | AT3G02730.1 | 43.023 | 86 | 48 | 1 | 42 | 126 | 88 | 173 | 9.21e-17 | 72.4 |
| Msa0857270 | AT3G15360.1 | 32.673 | 101 | 63 | 3 | 26 | 124 | 92 | 189 | 6.24e-15 | 68.2 |
| Msa0857270 | AT1G31020.1 | 39.024 | 82 | 48 | 1 | 45 | 124 | 75 | 156 | 8.24e-15 | 67.0 |
| Msa0857270 | AT1G03680.1 | 38.272 | 81 | 48 | 2 | 46 | 124 | 97 | 177 | 1.48e-14 | 67.0 |
| Msa0857270 | AT4G03520.1 | 33.735 | 83 | 53 | 2 | 44 | 124 | 101 | 183 | 1.16e-13 | 64.7 |
| Msa0857270 | AT1G52990.1 | 34.066 | 91 | 58 | 2 | 35 | 124 | 222 | 311 | 1.78e-13 | 65.9 |
| Msa0857270 | AT1G50320.1 | 39.189 | 74 | 41 | 2 | 44 | 116 | 90 | 160 | 3.92e-13 | 63.2 |
| Msa0857270 | AT4G04950.1 | 29.787 | 94 | 66 | 0 | 31 | 124 | 11 | 104 | 9.73e-12 | 61.2 |
| Msa0857270 | AT4G32580.1 | 30.864 | 81 | 56 | 0 | 44 | 124 | 24 | 104 | 1.02e-11 | 58.9 |
| Msa0857270 | AT1G07700.1 | 36.364 | 99 | 55 | 2 | 34 | 124 | 100 | 198 | 1.78e-11 | 59.3 |
| Msa0857270 | AT1G07700.4 | 36.364 | 99 | 55 | 2 | 34 | 124 | 100 | 198 | 1.78e-11 | 59.3 |
| Msa0857270 | AT1G07700.2 | 36.364 | 99 | 55 | 2 | 34 | 124 | 100 | 198 | 1.78e-11 | 59.3 |
| Msa0857270 | AT1G07700.3 | 36.364 | 99 | 55 | 2 | 34 | 124 | 113 | 211 | 3.72e-11 | 58.5 |
Find 42 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGCTAATTCTTTGATAAT+TGG | 0.122091 | 5_4:-52696872 | None:intergenic |
| GGAGGTGGCAAGTGCATTTC+AGG | 0.225705 | 5_4:+52697041 | Msa0857270:intron |
| CTCAACAACAGACTCTAAAT+TGG | 0.230357 | 5_4:-52696176 | None:intergenic |
| TTGCTTAAGAATCAACATTA+TGG | 0.250959 | 5_4:+52696141 | Msa0857270:exon |
| GATTGACGTGGATGAGTTAA+TGG | 0.268688 | 5_4:+52696922 | Msa0857270:CDS |
| CCTTCCACTCAACTGCTAAA+TGG | 0.287365 | 5_4:+52696227 | Msa0857270:CDS |
| CAGCTAATTCTTTGATAATT+GGG | 0.312442 | 5_4:-52696871 | None:intergenic |
| TGTTGTGTAGGACCTTATAT+AGG | 0.360903 | 5_4:-52696065 | None:intergenic |
| TGCTTAAGAATCAACATTAT+GGG | 0.362358 | 5_4:+52696142 | Msa0857270:exon |
| TACCAGCTTGTTTGTTACTT+TGG | 0.383274 | 5_4:-52696269 | None:intergenic |
| CATGCATGCATGTGTACTAT+AGG | 0.400266 | 5_4:+52697361 | Msa0857270:three_prime_UTR |
| AGACTCTAAATTGGAAAAGT+TGG | 0.412160 | 5_4:-52696167 | None:intergenic |
| AAAGATGGTCATTGATTTCA+CGG | 0.422756 | 5_4:+52696817 | Msa0857270:intron |
| ACTTAATTAGTACTTGGTAT+TGG | 0.435688 | 5_4:-52697263 | None:intergenic |
| ATACGTAGTCACCCTATATA+AGG | 0.437300 | 5_4:+52696053 | None:intergenic |
| TTTCTCTATACCGTCGTACT+TGG | 0.474961 | 5_4:-52697234 | None:intergenic |
| TAATTATATATCACATTGAT+CGG | 0.479538 | 5_4:-52697399 | None:intergenic |
| TAAATGGAAGGCTCACTTTG+AGG | 0.488391 | 5_4:+52696243 | Msa0857270:CDS |
| TCATTGATTTCACGGCTACT+TGG | 0.488401 | 5_4:+52696825 | Msa0857270:CDS |
| CCATTTAGCAGTTGAGTGGA+AGG | 0.494217 | 5_4:-52696227 | None:intergenic |
| TTCTTCAATAGTATAAATGT+TGG | 0.495545 | 5_4:-52697075 | None:intergenic |
| ACACCAACTTAATTAGTACT+TGG | 0.511925 | 5_4:-52697269 | None:intergenic |
| GATTTCACGGCTACTTGGTG+TGG | 0.515795 | 5_4:+52696830 | Msa0857270:CDS |
| TTATTAAAATATATTGCAAG+TGG | 0.519713 | 5_4:-52697186 | None:intergenic |
| GTTGTGTAGGACCTTATATA+GGG | 0.529533 | 5_4:-52696064 | None:intergenic |
| ACATTTATACTATTGAAGAA+AGG | 0.532669 | 5_4:+52697078 | Msa0857270:CDS |
| CTATAGTACACATGCATGCA+TGG | 0.538601 | 5_4:-52697360 | None:intergenic |
| GTGTGGACCTTGCAAATACA+TGG | 0.544731 | 5_4:+52696847 | Msa0857270:CDS |
| ATACCAAGTACTAATTAAGT+TGG | 0.555978 | 5_4:+52697266 | Msa0857270:three_prime_UTR |
| TTCCAAAGTAACAAACAAGC+TGG | 0.568571 | 5_4:+52696267 | Msa0857270:CDS |
| GAAACTGATTGAGAAACGTA+GGG | 0.577131 | 5_4:+52697146 | Msa0857270:CDS |
| CCTTCCATTTAGCAGTTGAG+TGG | 0.582577 | 5_4:-52696231 | None:intergenic |
| GTTATGTGTAAATGTTGTGT+AGG | 0.583191 | 5_4:-52696077 | None:intergenic |
| AGAAACTGATTGAGAAACGT+AGG | 0.583938 | 5_4:+52697145 | Msa0857270:CDS |
| ATTGGGTCCATGTATTTGCA+AGG | 0.586486 | 5_4:-52696854 | None:intergenic |
| TACAATTAATTTATTTACCT+AGG | 0.588803 | 5_4:+52697444 | Msa0857270:three_prime_UTR |
| CCACTCAACTGCTAAATGGA+AGG | 0.588835 | 5_4:+52696231 | Msa0857270:CDS |
| AATTGTATACTAACGTACCT+AGG | 0.619537 | 5_4:-52697461 | None:intergenic |
| TAGCAGTTGAGTGGAAGGTG+AGG | 0.659322 | 5_4:-52696222 | None:intergenic |
| TGAGTTCATTAAGATTGACG+TGG | 0.684888 | 5_4:+52696910 | Msa0857270:CDS |
| TGGAAGGTGAGGATGAGCGA+TGG | 0.701264 | 5_4:-52696211 | None:intergenic |
| TCAAGAGATACCAAGTACGA+CGG | 0.717440 | 5_4:+52697224 | Msa0857270:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTAATTATTTTTAAAGA+TGG | + | chr5_4:52696802-52696821 | Msa0857270:intron | 10.0% |
| !!! | TTCTTAATTATTTTTAAAGA+TGG | + | chr5_4:52696802-52696821 | Msa0857270:intron | 10.0% |
| !!! | TGTTAAATAATTTTTCTTAG+AGG | + | chr5_4:52696405-52696424 | Msa0857270:intron | 15.0% |
| !!! | GTTAAATAATTTTTCTTAGA+GGG | + | chr5_4:52696406-52696425 | Msa0857270:intron | 15.0% |
| !!! | TTGTTGGTAAATTAATTATA+TGG | - | chr5_4:52696472-52696491 | None:intergenic | 15.0% |
| !!! | AGTTTTCATTTTTTTTTTGT+TGG | - | chr5_4:52696488-52696507 | None:intergenic | 15.0% |
| !! | TAATCAAATATATGTCATAT+AGG | - | chr5_4:52696665-52696684 | None:intergenic | 15.0% |
| !!! | GCTAAAATTTTCTTATTATT+TGG | + | chr5_4:52696742-52696761 | Msa0857270:intron | 15.0% |
| !! | TATAGATATAAGATATCAAA+AGG | - | chr5_4:52696979-52696998 | None:intergenic | 15.0% |
| !! | TTATTAAAATATATTGCAAG+TGG | - | chr5_4:52697189-52697208 | None:intergenic | 15.0% |
| !!! | CAATATATTTTAATAAAGTC+AGG | + | chr5_4:52697193-52697212 | Msa0857270:three_prime_UTR | 15.0% |
| !! | TAATTATATATCACATTGAT+CGG | - | chr5_4:52697402-52697421 | None:intergenic | 15.0% |
| !! | TACAATTAATTTATTTACCT+AGG | + | chr5_4:52697444-52697463 | Msa0857270:three_prime_UTR | 15.0% |
| !!! | TGTTAAATAATTTTTCTTAG+AGG | + | chr5_4:52696405-52696424 | Msa0857270:intron | 15.0% |
| !!! | GTTAAATAATTTTTCTTAGA+GGG | + | chr5_4:52696406-52696425 | Msa0857270:intron | 15.0% |
| !!! | TTGTTGGTAAATTAATTATA+TGG | - | chr5_4:52696472-52696491 | None:intergenic | 15.0% |
| !!! | AGTTTTCATTTTTTTTTTGT+TGG | - | chr5_4:52696488-52696507 | None:intergenic | 15.0% |
| !! | TAATCAAATATATGTCATAT+AGG | - | chr5_4:52696665-52696684 | None:intergenic | 15.0% |
| !!! | GCTAAAATTTTCTTATTATT+TGG | + | chr5_4:52696742-52696761 | Msa0857270:intron | 15.0% |
| !! | TATAGATATAAGATATCAAA+AGG | - | chr5_4:52696979-52696998 | None:intergenic | 15.0% |
| !! | TTATTAAAATATATTGCAAG+TGG | - | chr5_4:52697189-52697208 | None:intergenic | 15.0% |
| !!! | CAATATATTTTAATAAAGTC+AGG | + | chr5_4:52697193-52697212 | Msa0857270:three_prime_UTR | 15.0% |
| !! | TAATTATATATCACATTGAT+CGG | - | chr5_4:52697402-52697421 | None:intergenic | 15.0% |
| !! | TACAATTAATTTATTTACCT+AGG | + | chr5_4:52697444-52697463 | Msa0857270:three_prime_UTR | 15.0% |
| !!! | TTTTTAGATACTTTGAAGTT+TGG | - | chr5_4:52696445-52696464 | None:intergenic | 20.0% |
| !!! | TAATAAGAAAATTTTAGCCA+AGG | - | chr5_4:52696740-52696759 | None:intergenic | 20.0% |
| !!! | TTAAAATCGTTTGTTTTATG+AGG | + | chr5_4:52696766-52696785 | Msa0857270:intron | 20.0% |
| !! | GATATCAAAAGGTAATTAAA+AGG | - | chr5_4:52696968-52696987 | None:intergenic | 20.0% |
| !! | TTCTTCAATAGTATAAATGT+TGG | - | chr5_4:52697078-52697097 | None:intergenic | 20.0% |
| !! | ACATTTATACTATTGAAGAA+AGG | + | chr5_4:52697078-52697097 | Msa0857270:CDS | 20.0% |
| !!! | TTTTTAGATACTTTGAAGTT+TGG | - | chr5_4:52696445-52696464 | None:intergenic | 20.0% |
| !!! | TAATAAGAAAATTTTAGCCA+AGG | - | chr5_4:52696740-52696759 | None:intergenic | 20.0% |
| !!! | TTAAAATCGTTTGTTTTATG+AGG | + | chr5_4:52696766-52696785 | Msa0857270:intron | 20.0% |
| !! | GATATCAAAAGGTAATTAAA+AGG | - | chr5_4:52696968-52696987 | None:intergenic | 20.0% |
| !! | TTCTTCAATAGTATAAATGT+TGG | - | chr5_4:52697078-52697097 | None:intergenic | 20.0% |
| !! | ACATTTATACTATTGAAGAA+AGG | + | chr5_4:52697078-52697097 | Msa0857270:CDS | 20.0% |
| ! | TTGCTTAAGAATCAACATTA+TGG | + | chr5_4:52696141-52696160 | Msa0857270:exon | 25.0% |
| ! | TGCTTAAGAATCAACATTAT+GGG | + | chr5_4:52696142-52696161 | Msa0857270:exon | 25.0% |
| !! | AAATTTTGTGACGAGAAAAA+CGG | - | chr5_4:52696515-52696534 | None:intergenic | 25.0% |
| !!! | TTTTTCATCGGTTAAAATCT+TGG | - | chr5_4:52696552-52696571 | None:intergenic | 25.0% |
| ! | AAAACCAAGGTTTCAAAAAA+CGG | + | chr5_4:52696569-52696588 | Msa0857270:intron | 25.0% |
| ! | ATGACAACAATAACAATCAT+GGG | - | chr5_4:52696595-52696614 | None:intergenic | 25.0% |
| !! | CAGCTAATTCTTTGATAATT+GGG | - | chr5_4:52696874-52696893 | None:intergenic | 25.0% |
| ! | ACTTAATTAGTACTTGGTAT+TGG | - | chr5_4:52697266-52697285 | None:intergenic | 25.0% |
| ! | ATACCAAGTACTAATTAAGT+TGG | + | chr5_4:52697266-52697285 | Msa0857270:three_prime_UTR | 25.0% |
| ! | TTGCTTAAGAATCAACATTA+TGG | + | chr5_4:52696141-52696160 | Msa0857270:exon | 25.0% |
| ! | TGCTTAAGAATCAACATTAT+GGG | + | chr5_4:52696142-52696161 | Msa0857270:exon | 25.0% |
| !! | AAATTTTGTGACGAGAAAAA+CGG | - | chr5_4:52696515-52696534 | None:intergenic | 25.0% |
| !!! | TTTTTCATCGGTTAAAATCT+TGG | - | chr5_4:52696552-52696571 | None:intergenic | 25.0% |
| ! | AAAACCAAGGTTTCAAAAAA+CGG | + | chr5_4:52696569-52696588 | Msa0857270:intron | 25.0% |
| ! | ATGACAACAATAACAATCAT+GGG | - | chr5_4:52696595-52696614 | None:intergenic | 25.0% |
| !! | CAGCTAATTCTTTGATAATT+GGG | - | chr5_4:52696874-52696893 | None:intergenic | 25.0% |
| ! | ACTTAATTAGTACTTGGTAT+TGG | - | chr5_4:52697266-52697285 | None:intergenic | 25.0% |
| ! | ATACCAAGTACTAATTAAGT+TGG | + | chr5_4:52697266-52697285 | Msa0857270:three_prime_UTR | 25.0% |
| GTTATGTGTAAATGTTGTGT+AGG | - | chr5_4:52696080-52696099 | None:intergenic | 30.0% | |
| AGACTCTAAATTGGAAAAGT+TGG | - | chr5_4:52696170-52696189 | None:intergenic | 30.0% | |
| ATTAGATCAACACAACGATT+TGG | + | chr5_4:52696309-52696328 | Msa0857270:intron | 30.0% | |
| TAACATTGAATGATTCGATG+AGG | - | chr5_4:52696348-52696367 | None:intergenic | 30.0% | |
| TTTAACCGATGAAAAAACCA+AGG | + | chr5_4:52696556-52696575 | Msa0857270:intron | 30.0% | |
| !!! | TGAAACCTTGGTTTTTTCAT+CGG | - | chr5_4:52696564-52696583 | None:intergenic | 30.0% |
| CATGACAACAATAACAATCA+TGG | - | chr5_4:52696596-52696615 | None:intergenic | 30.0% | |
| ! | CTTAACATTTTCTTTGCACT+CGG | + | chr5_4:52696627-52696646 | Msa0857270:intron | 30.0% |
| !!! | TTAGCCAAGGTTTTAAATCA+CGG | - | chr5_4:52696727-52696746 | None:intergenic | 30.0% |
| !! | AAAGATGGTCATTGATTTCA+CGG | + | chr5_4:52696817-52696836 | Msa0857270:intron | 30.0% |
| ! | GCAGCTAATTCTTTGATAAT+TGG | - | chr5_4:52696875-52696894 | None:intergenic | 30.0% |
| GATAATGCAAAATGTACCAA+TGG | + | chr5_4:52697013-52697032 | Msa0857270:intron | 30.0% | |
| AGGAAAAGTAGTTGAAAAAG+TGG | + | chr5_4:52697098-52697117 | Msa0857270:CDS | 30.0% | |
| AAAAGTAGTTGAAAAAGTGG+TGG | + | chr5_4:52697101-52697120 | Msa0857270:CDS | 30.0% | |
| AAAGTAGTTGAAAAAGTGGT+GGG | + | chr5_4:52697102-52697121 | Msa0857270:CDS | 30.0% | |
| ACACCAACTTAATTAGTACT+TGG | - | chr5_4:52697272-52697291 | None:intergenic | 30.0% | |
| GTTATGTGTAAATGTTGTGT+AGG | - | chr5_4:52696080-52696099 | None:intergenic | 30.0% | |
| AGACTCTAAATTGGAAAAGT+TGG | - | chr5_4:52696170-52696189 | None:intergenic | 30.0% | |
| ATTAGATCAACACAACGATT+TGG | + | chr5_4:52696309-52696328 | Msa0857270:intron | 30.0% | |
| TAACATTGAATGATTCGATG+AGG | - | chr5_4:52696348-52696367 | None:intergenic | 30.0% | |
| TTTAACCGATGAAAAAACCA+AGG | + | chr5_4:52696556-52696575 | Msa0857270:intron | 30.0% | |
| !!! | TGAAACCTTGGTTTTTTCAT+CGG | - | chr5_4:52696564-52696583 | None:intergenic | 30.0% |
| CATGACAACAATAACAATCA+TGG | - | chr5_4:52696596-52696615 | None:intergenic | 30.0% | |
| ! | CTTAACATTTTCTTTGCACT+CGG | + | chr5_4:52696627-52696646 | Msa0857270:intron | 30.0% |
| !!! | TTAGCCAAGGTTTTAAATCA+CGG | - | chr5_4:52696727-52696746 | None:intergenic | 30.0% |
| !! | AAAGATGGTCATTGATTTCA+CGG | + | chr5_4:52696817-52696836 | Msa0857270:intron | 30.0% |
| ! | GCAGCTAATTCTTTGATAAT+TGG | - | chr5_4:52696875-52696894 | None:intergenic | 30.0% |
| GATAATGCAAAATGTACCAA+TGG | + | chr5_4:52697013-52697032 | Msa0857270:intron | 30.0% | |
| AGGAAAAGTAGTTGAAAAAG+TGG | + | chr5_4:52697098-52697117 | Msa0857270:CDS | 30.0% | |
| AAAAGTAGTTGAAAAAGTGG+TGG | + | chr5_4:52697101-52697120 | Msa0857270:CDS | 30.0% | |
| AAAGTAGTTGAAAAAGTGGT+GGG | + | chr5_4:52697102-52697121 | Msa0857270:CDS | 30.0% | |
| ACACCAACTTAATTAGTACT+TGG | - | chr5_4:52697272-52697291 | None:intergenic | 30.0% | |
| GTTGTGTAGGACCTTATATA+GGG | - | chr5_4:52696067-52696086 | None:intergenic | 35.0% | |
| TGTTGTGTAGGACCTTATAT+AGG | - | chr5_4:52696068-52696087 | None:intergenic | 35.0% | |
| CTCAACAACAGACTCTAAAT+TGG | - | chr5_4:52696179-52696198 | None:intergenic | 35.0% | |
| TTCCAAAGTAACAAACAAGC+TGG | + | chr5_4:52696267-52696286 | Msa0857270:CDS | 35.0% | |
| ! | TACCAGCTTGTTTGTTACTT+TGG | - | chr5_4:52696272-52696291 | None:intergenic | 35.0% |
| TGAGTTCATTAAGATTGACG+TGG | + | chr5_4:52696910-52696929 | Msa0857270:CDS | 35.0% | |
| CAAAATGTACCAATGGAAAC+AGG | + | chr5_4:52697020-52697039 | Msa0857270:intron | 35.0% | |
| AGAAACTGATTGAGAAACGT+AGG | + | chr5_4:52697145-52697164 | Msa0857270:CDS | 35.0% | |
| GAAACTGATTGAGAAACGTA+GGG | + | chr5_4:52697146-52697165 | Msa0857270:CDS | 35.0% | |
| GTTGTGTAGGACCTTATATA+GGG | - | chr5_4:52696067-52696086 | None:intergenic | 35.0% | |
| TGTTGTGTAGGACCTTATAT+AGG | - | chr5_4:52696068-52696087 | None:intergenic | 35.0% | |
| CTCAACAACAGACTCTAAAT+TGG | - | chr5_4:52696179-52696198 | None:intergenic | 35.0% | |
| TTCCAAAGTAACAAACAAGC+TGG | + | chr5_4:52696267-52696286 | Msa0857270:CDS | 35.0% | |
| ! | TACCAGCTTGTTTGTTACTT+TGG | - | chr5_4:52696272-52696291 | None:intergenic | 35.0% |
| TGAGTTCATTAAGATTGACG+TGG | + | chr5_4:52696910-52696929 | Msa0857270:CDS | 35.0% | |
| CAAAATGTACCAATGGAAAC+AGG | + | chr5_4:52697020-52697039 | Msa0857270:intron | 35.0% | |
| AGAAACTGATTGAGAAACGT+AGG | + | chr5_4:52697145-52697164 | Msa0857270:CDS | 35.0% | |
| GAAACTGATTGAGAAACGTA+GGG | + | chr5_4:52697146-52697165 | Msa0857270:CDS | 35.0% | |
| TAAATGGAAGGCTCACTTTG+AGG | + | chr5_4:52696243-52696262 | Msa0857270:CDS | 40.0% | |
| !!! | AAGGTTTTAAATCACGGTCG+TGG | - | chr5_4:52696721-52696740 | None:intergenic | 40.0% |
| ! | ACGACCGTGATTTAAAACCT+TGG | + | chr5_4:52696720-52696739 | Msa0857270:intron | 40.0% |
| !! | TCATTGATTTCACGGCTACT+TGG | + | chr5_4:52696825-52696844 | Msa0857270:CDS | 40.0% |
| ATTGGGTCCATGTATTTGCA+AGG | - | chr5_4:52696857-52696876 | None:intergenic | 40.0% | |
| GATTGACGTGGATGAGTTAA+TGG | + | chr5_4:52696922-52696941 | Msa0857270:CDS | 40.0% | |
| AATGTACCAATGGAAACAGG+AGG | + | chr5_4:52697023-52697042 | Msa0857270:intron | 40.0% | |
| ! | AAAAGTGGTGGGAGCAAAAA+AGG | + | chr5_4:52697113-52697132 | Msa0857270:CDS | 40.0% |
| TCAAGAGATACCAAGTACGA+CGG | + | chr5_4:52697224-52697243 | Msa0857270:three_prime_UTR | 40.0% | |
| TTTCTCTATACCGTCGTACT+TGG | - | chr5_4:52697237-52697256 | None:intergenic | 40.0% | |
| CTATAGTACACATGCATGCA+TGG | - | chr5_4:52697363-52697382 | None:intergenic | 40.0% | |
| CATGCATGCATGTGTACTAT+AGG | + | chr5_4:52697361-52697380 | Msa0857270:three_prime_UTR | 40.0% | |
| TAAATGGAAGGCTCACTTTG+AGG | + | chr5_4:52696243-52696262 | Msa0857270:CDS | 40.0% | |
| !!! | AAGGTTTTAAATCACGGTCG+TGG | - | chr5_4:52696721-52696740 | None:intergenic | 40.0% |
| ! | ACGACCGTGATTTAAAACCT+TGG | + | chr5_4:52696720-52696739 | Msa0857270:intron | 40.0% |
| !! | TCATTGATTTCACGGCTACT+TGG | + | chr5_4:52696825-52696844 | Msa0857270:CDS | 40.0% |
| ATTGGGTCCATGTATTTGCA+AGG | - | chr5_4:52696857-52696876 | None:intergenic | 40.0% | |
| GATTGACGTGGATGAGTTAA+TGG | + | chr5_4:52696922-52696941 | Msa0857270:CDS | 40.0% | |
| AATGTACCAATGGAAACAGG+AGG | + | chr5_4:52697023-52697042 | Msa0857270:intron | 40.0% | |
| ! | AAAAGTGGTGGGAGCAAAAA+AGG | + | chr5_4:52697113-52697132 | Msa0857270:CDS | 40.0% |
| TCAAGAGATACCAAGTACGA+CGG | + | chr5_4:52697224-52697243 | Msa0857270:three_prime_UTR | 40.0% | |
| TTTCTCTATACCGTCGTACT+TGG | - | chr5_4:52697237-52697256 | None:intergenic | 40.0% | |
| CTATAGTACACATGCATGCA+TGG | - | chr5_4:52697363-52697382 | None:intergenic | 40.0% | |
| CATGCATGCATGTGTACTAT+AGG | + | chr5_4:52697361-52697380 | Msa0857270:three_prime_UTR | 40.0% | |
| CCATTTAGCAGTTGAGTGGA+AGG | - | chr5_4:52696230-52696249 | None:intergenic | 45.0% | |
| CCTTCCACTCAACTGCTAAA+TGG | + | chr5_4:52696227-52696246 | Msa0857270:CDS | 45.0% | |
| CCTTCCATTTAGCAGTTGAG+TGG | - | chr5_4:52696234-52696253 | None:intergenic | 45.0% | |
| CCACTCAACTGCTAAATGGA+AGG | + | chr5_4:52696231-52696250 | Msa0857270:CDS | 45.0% | |
| !!! | TGGGCCGTTTTTTGAAACCT+TGG | - | chr5_4:52696576-52696595 | None:intergenic | 45.0% |
| GTGTGGACCTTGCAAATACA+TGG | + | chr5_4:52696847-52696866 | Msa0857270:CDS | 45.0% | |
| CCATTTAGCAGTTGAGTGGA+AGG | - | chr5_4:52696230-52696249 | None:intergenic | 45.0% | |
| CCTTCCACTCAACTGCTAAA+TGG | + | chr5_4:52696227-52696246 | Msa0857270:CDS | 45.0% | |
| CCTTCCATTTAGCAGTTGAG+TGG | - | chr5_4:52696234-52696253 | None:intergenic | 45.0% | |
| CCACTCAACTGCTAAATGGA+AGG | + | chr5_4:52696231-52696250 | Msa0857270:CDS | 45.0% | |
| !!! | TGGGCCGTTTTTTGAAACCT+TGG | - | chr5_4:52696576-52696595 | None:intergenic | 45.0% |
| GTGTGGACCTTGCAAATACA+TGG | + | chr5_4:52696847-52696866 | Msa0857270:CDS | 45.0% | |
| TAGCAGTTGAGTGGAAGGTG+AGG | - | chr5_4:52696225-52696244 | None:intergenic | 50.0% | |
| ! | GATTTCACGGCTACTTGGTG+TGG | + | chr5_4:52696830-52696849 | Msa0857270:CDS | 50.0% |
| GTACCAATGGAAACAGGAGG+TGG | + | chr5_4:52697026-52697045 | Msa0857270:intron | 50.0% | |
| TTGCCACCTCCTGTTTCCAT+TGG | - | chr5_4:52697032-52697051 | None:intergenic | 50.0% | |
| TAGCAGTTGAGTGGAAGGTG+AGG | - | chr5_4:52696225-52696244 | None:intergenic | 50.0% | |
| ! | GATTTCACGGCTACTTGGTG+TGG | + | chr5_4:52696830-52696849 | Msa0857270:CDS | 50.0% |
| GTACCAATGGAAACAGGAGG+TGG | + | chr5_4:52697026-52697045 | Msa0857270:intron | 50.0% | |
| TTGCCACCTCCTGTTTCCAT+TGG | - | chr5_4:52697032-52697051 | None:intergenic | 50.0% | |
| TGGAAGGTGAGGATGAGCGA+TGG | - | chr5_4:52696214-52696233 | None:intergenic | 55.0% | |
| GGAGGTGGCAAGTGCATTTC+AGG | + | chr5_4:52697041-52697060 | Msa0857270:intron | 55.0% | |
| TGGAAGGTGAGGATGAGCGA+TGG | - | chr5_4:52696214-52696233 | None:intergenic | 55.0% | |
| GGAGGTGGCAAGTGCATTTC+AGG | + | chr5_4:52697041-52697060 | Msa0857270:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 52696063 | 52697482 | 52696063 | ID=Msa0857270;Name=Msa0857270 |
| chr5_4 | mRNA | 52696063 | 52697482 | 52696063 | ID=Msa0857270-mRNA-1;Parent=Msa0857270;Name=Msa0857270-mRNA-1;_AED=0.04;_eAED=0.04;_QI=97|1|1|1|1|1|3|309|127 |
| chr5_4 | exon | 52696063 | 52696288 | 52696063 | ID=Msa0857270-mRNA-1:exon:16469;Parent=Msa0857270-mRNA-1 |
| chr5_4 | exon | 52696821 | 52696943 | 52696821 | ID=Msa0857270-mRNA-1:exon:16470;Parent=Msa0857270-mRNA-1 |
| chr5_4 | exon | 52697042 | 52697482 | 52697042 | ID=Msa0857270-mRNA-1:exon:16471;Parent=Msa0857270-mRNA-1 |
| chr5_4 | five_prime_UTR | 52696063 | 52696159 | 52696063 | ID=Msa0857270-mRNA-1:five_prime_utr;Parent=Msa0857270-mRNA-1 |
| chr5_4 | CDS | 52696160 | 52696288 | 52696160 | ID=Msa0857270-mRNA-1:cds;Parent=Msa0857270-mRNA-1 |
| chr5_4 | CDS | 52696821 | 52696943 | 52696821 | ID=Msa0857270-mRNA-1:cds;Parent=Msa0857270-mRNA-1 |
| chr5_4 | CDS | 52697042 | 52697173 | 52697042 | ID=Msa0857270-mRNA-1:cds;Parent=Msa0857270-mRNA-1 |
| chr5_4 | three_prime_UTR | 52697174 | 52697482 | 52697174 | ID=Msa0857270-mRNA-1:three_prime_utr;Parent=Msa0857270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
