Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848990 | ABN08053.1 | 44.737 | 114 | 63 | 0 | 397 | 510 | 4 | 117 | 6.26e-20 | 97.1 |
| Msa0848990 | ABN08053.1 | 53.333 | 120 | 53 | 2 | 178 | 295 | 4 | 122 | 2.16e-28 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848990 | A2Q353 | 44.737 | 114 | 63 | 0 | 397 | 510 | 4 | 117 | 2.99e-20 | 97.1 |
| Msa0848990 | A2Q353 | 53.333 | 120 | 53 | 2 | 178 | 295 | 4 | 122 | 1.03e-28 | 120 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031520 | Msa0848990 | 0.801549 | 8.543687e-49 | -8.615850e-47 |
| Msa0602980 | Msa0848990 | 0.801429 | 9.041943e-49 | -8.615850e-47 |
| Msa0615010 | Msa0848990 | 0.805955 | 1.039899e-49 | -8.615850e-47 |
| Msa0645300 | Msa0848990 | 0.825910 | 3.623120e-54 | -8.615850e-47 |
| Msa0703780 | Msa0848990 | 0.802438 | 5.610593e-49 | -8.615850e-47 |
| Msa0731940 | Msa0848990 | 0.803510 | 3.368872e-49 | -8.615850e-47 |
| Msa0768370 | Msa0848990 | 0.832498 | 9.132322e-56 | -8.615850e-47 |
| Msa0824590 | Msa0848990 | 0.812491 | 4.127540e-51 | -8.615850e-47 |
| Msa0131770 | Msa0848990 | 0.808496 | 3.009703e-50 | -8.615850e-47 |
| Msa0195100 | Msa0848990 | 0.825168 | 5.430434e-54 | -8.615850e-47 |
| Msa0389770 | Msa0848990 | 0.803397 | 3.555326e-49 | -8.615850e-47 |
| Msa0413410 | Msa0848990 | 0.800127 | 1.667177e-48 | -8.615850e-47 |
| Msa0453580 | Msa0848990 | 0.807746 | 4.348395e-50 | -8.615850e-47 |
| Msa0251640 | Msa0848990 | 0.817650 | 2.954458e-52 | -8.615850e-47 |
| Msa0259210 | Msa0848990 | 0.800641 | 1.310133e-48 | -8.615850e-47 |
| Msa0308630 | Msa0848990 | 0.807494 | 4.917957e-50 | -8.615850e-47 |
| Msa0322360 | Msa0848990 | 0.823939 | 1.057391e-53 | -8.615850e-47 |
| Msa0336320 | Msa0848990 | 0.813380 | 2.635611e-51 | -8.615850e-47 |
| Msa0343850 | Msa0848990 | 0.801910 | 7.205827e-49 | -8.615850e-47 |
| Msa0514320 | Msa0848990 | 0.807231 | 5.592093e-50 | -8.615850e-47 |
| Msa0523940 | Msa0848990 | 0.803611 | 3.209426e-49 | -8.615850e-47 |
| Msa0545700 | Msa0848990 | 0.821502 | 3.901816e-53 | -8.615850e-47 |
| Msa0844420 | Msa0848990 | 0.806189 | 9.280858e-50 | -8.615850e-47 |
| Msa0844490 | Msa0848990 | 0.857918 | 1.176645e-62 | -8.615850e-47 |
| Msa0848990 | Msa0864070 | 0.806642 | 7.451441e-50 | -8.615850e-47 |
| Msa0848990 | Msa0873870 | 0.813869 | 2.056842e-51 | -8.615850e-47 |
| Msa0848990 | Msa0877250 | 0.812721 | 3.675821e-51 | -8.615850e-47 |
| Msa0848990 | Msa0899430 | 0.857400 | 1.674563e-62 | -8.615850e-47 |
| Msa0848990 | Msa0899450 | 0.838085 | 3.544959e-57 | -8.615850e-47 |
| Msa0848990 | Msa0927380 | 0.849749 | 2.648588e-60 | -8.615850e-47 |
| Msa0848990 | Msa0939110 | 0.822840 | 1.910276e-53 | -8.615850e-47 |
| Msa0848990 | Msa0948320 | 0.804847 | 1.775056e-49 | -8.615850e-47 |
| Msa0848990 | Msa0958550 | 0.843339 | 1.489517e-58 | -8.615850e-47 |
| Msa0848990 | Msa0964900 | 0.837420 | 5.254228e-57 | -8.615850e-47 |
| Msa0848990 | Msa0974080 | 0.825410 | 4.760339e-54 | -8.615850e-47 |
| Msa0848990 | Msa0997370 | 0.819038 | 1.432735e-52 | -8.615850e-47 |
| Msa0848990 | Msa0999220 | 0.804345 | 2.258966e-49 | -8.615850e-47 |
| Msa0848990 | Msa1002850 | 0.814785 | 1.290772e-51 | -8.615850e-47 |
| Msa0848990 | Msa1121490 | 0.834882 | 2.318375e-56 | -8.615850e-47 |
| Msa0848990 | Msa1137570 | 0.810473 | 1.133002e-50 | -8.615850e-47 |
| Msa0848990 | Msa1144450 | 0.806286 | 8.854362e-50 | -8.615850e-47 |
| Msa0848990 | Msa1185110 | 0.813170 | 2.931215e-51 | -8.615850e-47 |
| Msa0848990 | Msa1205020 | 0.812483 | 4.144068e-51 | -8.615850e-47 |
| Msa0848990 | Msa1227730 | 0.811033 | 8.570599e-51 | -8.615850e-47 |
| Msa0848990 | Msa1276890 | 0.804158 | 2.470874e-49 | -8.615850e-47 |
| Msa0848990 | Msa1284680 | 0.805378 | 1.374356e-49 | -8.615850e-47 |
| Msa0848990 | Msa1285550 | 0.813700 | 2.241486e-51 | -8.615850e-47 |
| Msa0848990 | Msa1390700 | 0.815351 | 9.665244e-52 | -8.615850e-47 |
| Msa0848990 | Msa1392910 | 0.805853 | 1.092404e-49 | -8.615850e-47 |
| Msa0848990 | Msa1423780 | 0.802772 | 4.787016e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848990 | MtrunA17_Chr2g0303471 | 53.333 | 120 | 53 | 2 | 178 | 295 | 4 | 122 | 1.99e-32 | 120 |
| Msa0848990 | MtrunA17_Chr2g0303471 | 44.737 | 114 | 63 | 0 | 397 | 510 | 4 | 117 | 5.76e-24 | 97.1 |
| Msa0848990 | MtrunA17_Chr2g0303471 | 33.913 | 115 | 70 | 3 | 44 | 157 | 12 | 121 | 3.14e-13 | 66.6 |
| Msa0848990 | MtrunA17_Chr4g0075551 | 38.686 | 137 | 71 | 3 | 171 | 294 | 45 | 181 | 1.57e-22 | 95.1 |
| Msa0848990 | MtrunA17_Chr4g0075551 | 41.045 | 134 | 65 | 4 | 390 | 510 | 45 | 177 | 8.14e-21 | 90.1 |
| Msa0848990 | MtrunA17_Chr4g0075551 | 31.852 | 135 | 84 | 4 | 31 | 157 | 47 | 181 | 9.79e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 113 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGCGCAAATTTCAGTTAA+AGG | 0.184922 | 5_4:+35205665 | Msa0848990:CDS |
| TTGCAACATCCACAAGAATT+TGG | 0.231971 | 5_4:-35207783 | None:intergenic |
| GAATCATCTTCCTTCTTTAT+TGG | 0.237202 | 5_4:+35205129 | Msa0848990:CDS |
| AAATCCGAGCCTTCTCTTCT+TGG | 0.278935 | 5_4:-35205718 | None:intergenic |
| CAGTTACCGCTCAGCCTTCC+AGG | 0.297764 | 5_4:+35206802 | Msa0848990:intron |
| TTAAGACGAGCACAAATATC+TGG | 0.303599 | 5_4:-35205357 | None:intergenic |
| CCCTAGTATGTTGGATCAAA+TGG | 0.315421 | 5_4:+35206500 | Msa0848990:CDS |
| CAGTTACGGCGCAGCCTTCC+AGG | 0.323995 | 5_4:+35207483 | Msa0848990:intron |
| ACAATGCCATTGGCCCCTAT+TGG | 0.339774 | 5_4:+35206451 | Msa0848990:CDS |
| CCTGGGCGGTGATCGGGTCT+TGG | 0.355875 | 5_4:-35207967 | None:intergenic |
| ATCGGTCCTGGGCGGTGATC+GGG | 0.364383 | 5_4:-35207973 | None:intergenic |
| GACTCATATCGGATAATTGC+TGG | 0.372336 | 5_4:+35206522 | Msa0848990:CDS |
| AGGACTTTACCTTCTCTTCC+TGG | 0.387202 | 5_4:-35206820 | None:intergenic |
| AGGACTTTACCTTCTCTTCC+TGG | 0.387202 | 5_4:-35207501 | None:intergenic |
| TTAATTGATCGCTCTCTAGA+AGG | 0.389672 | 5_4:+35207238 | Msa0848990:CDS |
| GATCGGTCCTGGGCGGTGAT+CGG | 0.395774 | 5_4:-35207974 | None:intergenic |
| GATAGGTCCCTGGCAGTGAT+TGG | 0.406728 | 5_4:-35205523 | None:intergenic |
| TCCATTTGATCCAACATACT+AGG | 0.414437 | 5_4:-35206501 | None:intergenic |
| GTTATCTAAACAGAGGCGTT+TGG | 0.416034 | 5_4:-35207269 | None:intergenic |
| ACAAGAAGAAGAAGCCTATC+AGG | 0.420566 | 5_4:+35205155 | Msa0848990:CDS |
| CTTCTCTTCTTGGACGGCTG+AGG | 0.422372 | 5_4:-35205708 | None:intergenic |
| CTCGAAATGGACTCGTCTCC+AGG | 0.429450 | 5_4:+35204624 | None:intergenic |
| CCCTGGCAGTGATTGGGTCT+TGG | 0.430320 | 5_4:-35205516 | None:intergenic |
| ACAAGGCTATTGGTCGTTGT+TGG | 0.431985 | 5_4:+35208034 | Msa0848990:CDS |
| TTCTCTTCTTGGACGGCTGA+GGG | 0.433369 | 5_4:-35205707 | None:intergenic |
| CTAAAAGTGACGCAAAATCT+TGG | 0.433433 | 5_4:-35208130 | None:intergenic |
| TTGGATACATTGAAAGAGAT+TGG | 0.434993 | 5_4:-35207856 | None:intergenic |
| TGCAAGTAGTGATTGGATCT+TGG | 0.435512 | 5_4:-35206384 | None:intergenic |
| AGAAGATTAAGAAGCCGTCC+AGG | 0.441996 | 5_4:+35206958 | Msa0848990:CDS |
| AGAAGATTAAGAAGCCGTCC+AGG | 0.441996 | 5_4:+35207626 | Msa0848990:CDS |
| GATAACTTCTTATACTCTCC+AGG | 0.446077 | 5_4:+35207286 | Msa0848990:CDS |
| CTCTGGAGCAACTCATTGTC+AGG | 0.453704 | 5_4:+35205471 | Msa0848990:CDS |
| ATCTGTCATAATAGAATAGT+AGG | 0.454817 | 5_4:-35206313 | None:intergenic |
| TCACTGCCAGGTTGTACAAA+TGG | 0.456407 | 5_4:+35207599 | Msa0848990:intron |
| TTGCAAGACTGCGAGACTAT+TGG | 0.460455 | 5_4:+35205638 | Msa0848990:CDS |
| AGGCTATTGGTCGTTGTTGG+AGG | 0.460720 | 5_4:+35208037 | Msa0848990:CDS |
| TGGATCAAATGGACTCATAT+CGG | 0.461338 | 5_4:+35206511 | Msa0848990:CDS |
| TTTCAATGTATCCAACAAGT+TGG | 0.461619 | 5_4:+35207864 | Msa0848990:CDS |
| TCACTGCCAGGTTGTACAAA+TGG | 0.474076 | 5_4:+35206931 | Msa0848990:intron |
| GTACACTTCATGCAAGGATT+CGG | 0.481226 | 5_4:-35205424 | None:intergenic |
| ATGTCTCCACGACTAGAATA+CGG | 0.481624 | 5_4:+35205612 | Msa0848990:CDS |
| TTGCTAGTCCAGCTTAATAG+TGG | 0.485561 | 5_4:-35206567 | None:intergenic |
| GGATTCTGTGTTCACTGCGT+TGG | 0.488203 | 5_4:-35206292 | None:intergenic |
| AAGTTGGATTTAAAATCCTA+TGG | 0.493291 | 5_4:+35207880 | Msa0848990:CDS |
| GTACATTGAATGATCGGTCC+TGG | 0.496779 | 5_4:-35207985 | None:intergenic |
| TTCTTGTCAACCAATAAAGA+AGG | 0.497287 | 5_4:-35205139 | None:intergenic |
| CAAGTTTCAACTTGAGAACA+AGG | 0.501169 | 5_4:+35206248 | Msa0848990:CDS |
| ATAGGTCCCTGGCAGTGATT+GGG | 0.502253 | 5_4:-35205522 | None:intergenic |
| TCCAAGACCCAATCACTGCC+AGG | 0.509954 | 5_4:+35205515 | Msa0848990:CDS |
| CTTTACCTTCTCTTCCTGGA+AGG | 0.515903 | 5_4:-35206816 | None:intergenic |
| CTTTACCTTCTCTTCCTGGA+AGG | 0.515903 | 5_4:-35207497 | None:intergenic |
| TAACTGAAATTTGCGCATCT+CGG | 0.518603 | 5_4:-35205661 | None:intergenic |
| TTAGAGCCGCCTCACTCTCC+AGG | 0.523260 | 5_4:+35206600 | Msa0848990:CDS |
| ACAACACTGCGACATAAGAT+AGG | 0.525355 | 5_4:-35205540 | None:intergenic |
| GACTCTCCAATAGGGGCCAA+TGG | 0.525366 | 5_4:-35206457 | None:intergenic |
| TTTCAGTTAAAGGCTCGGAT+TGG | 0.528273 | 5_4:+35205675 | Msa0848990:CDS |
| TGTCTCCACGACTAGAATAC+GGG | 0.528366 | 5_4:+35205613 | Msa0848990:CDS |
| CCGAGCCTTCTCTTCTTGGA+CGG | 0.529562 | 5_4:-35205714 | None:intergenic |
| CCAAGACCCGATCACCGCCC+AGG | 0.533298 | 5_4:+35207967 | Msa0848990:CDS |
| GGCTATTGGTCGTTGTTGGA+GGG | 0.539292 | 5_4:+35208038 | Msa0848990:CDS |
| TAATTGATCGCTCTCTAGAA+GGG | 0.540454 | 5_4:+35207239 | Msa0848990:CDS |
| AAAATCCTATGGTCAAATTG+TGG | 0.542866 | 5_4:+35207891 | Msa0848990:CDS |
| GCAAATTTCAGTTAAAGGCT+CGG | 0.548210 | 5_4:+35205670 | Msa0848990:CDS |
| GAGGACTTACACACTCTCCC+TGG | 0.551842 | 5_4:-35206976 | None:intergenic |
| GAGGACTTACACACTCTCCC+TGG | 0.551842 | 5_4:-35207644 | None:intergenic |
| TACATTGAATGATCGGTCCT+GGG | 0.551903 | 5_4:-35207984 | None:intergenic |
| ACAGTGATCCACTATTAAGC+TGG | 0.553971 | 5_4:+35206559 | Msa0848990:CDS |
| AACGAGACGACTTACCTGAT+AGG | 0.554755 | 5_4:-35205169 | None:intergenic |
| TAGTTTCTAGCAACTTAACG+TGG | 0.556708 | 5_4:+35206337 | Msa0848990:CDS |
| TCGGATACTCTGAAATAGAC+TGG | 0.557080 | 5_4:-35205405 | None:intergenic |
| GAGGGCCAACATTTGTGATG+AGG | 0.561335 | 5_4:+35208056 | Msa0848990:CDS |
| CCATTTGATCCAACATACTA+GGG | 0.562578 | 5_4:-35206500 | None:intergenic |
| TCCTATGGTCAAATTGTGGA+TGG | 0.562683 | 5_4:+35207895 | Msa0848990:CDS |
| AGGGTAGTACATTGAATGAT+CGG | 0.566119 | 5_4:-35207991 | None:intergenic |
| CGCAGCCTTCCAGGAAGAGA+AGG | 0.567362 | 5_4:+35207492 | Msa0848990:CDS |
| AGAGAAGGCTCGGATTTCCC+AGG | 0.567377 | 5_4:+35205724 | Msa0848990:CDS |
| CCGTCCAAGAAGAGAAGGCT+CGG | 0.569243 | 5_4:+35205714 | Msa0848990:CDS |
| TTTGCTTCAAAAGTATACTC+AGG | 0.572249 | 5_4:+35207825 | Msa0848990:CDS |
| GTAAGCCTCATCACAAATGT+TGG | 0.574113 | 5_4:-35208061 | None:intergenic |
| AGATTGTAACCCTAGTATGT+TGG | 0.577522 | 5_4:+35206491 | Msa0848990:CDS |
| CTCAGCCGTCCAAGAAGAGA+AGG | 0.577940 | 5_4:+35205709 | Msa0848990:CDS |
| TAAGACGAGCACAAATATCT+GGG | 0.581550 | 5_4:-35205356 | None:intergenic |
| ACCGTAGTACACTTCATGCA+AGG | 0.586845 | 5_4:-35205430 | None:intergenic |
| CTCAGCCTTCCAGGAAGAGA+AGG | 0.587411 | 5_4:+35206811 | Msa0848990:CDS |
| ACTCATATCGGATAATTGCT+GGG | 0.588016 | 5_4:+35206523 | Msa0848990:CDS |
| GGAGGTGCACCAAATTCTTG+TGG | 0.588115 | 5_4:+35207774 | Msa0848990:CDS |
| ACATGATGACCTTCCAATGA+CGG | 0.590396 | 5_4:-35205593 | None:intergenic |
| CAATCCCCGTATTCTAGTCG+TGG | 0.590728 | 5_4:-35205618 | None:intergenic |
| ACCATCCACAATTTGACCAT+AGG | 0.596248 | 5_4:-35207896 | None:intergenic |
| AGTTTCTAGCAACTTAACGT+GGG | 0.605785 | 5_4:+35206338 | Msa0848990:CDS |
| GAAGATTAAGAAGCCGTCCA+GGG | 0.618843 | 5_4:+35206959 | Msa0848990:CDS |
| GAAGATTAAGAAGCCGTCCA+GGG | 0.618843 | 5_4:+35207627 | Msa0848990:CDS |
| TCCTTGCATGAAGTGTACTA+CGG | 0.619787 | 5_4:+35205429 | Msa0848990:CDS |
| TCTCTTCTTGGACGGCTGAG+GGG | 0.625166 | 5_4:-35205706 | None:intergenic |
| TGATCGCTCTCTAGAAGGGG+AGG | 0.633094 | 5_4:+35207243 | Msa0848990:CDS |
| ACTTACACACTCTCCCTGGA+CGG | 0.635749 | 5_4:-35206972 | None:intergenic |
| ACTTACACACTCTCCCTGGA+CGG | 0.635749 | 5_4:-35207640 | None:intergenic |
| CCAAGACCCAATCACTGCCA+GGG | 0.637709 | 5_4:+35205516 | Msa0848990:CDS |
| GATACTCTGAAATAGACTGG+TGG | 0.641242 | 5_4:-35205402 | None:intergenic |
| TGCGACATAAGATAGGTCCC+TGG | 0.642036 | 5_4:-35205533 | None:intergenic |
| AATTGATCGCTCTCTAGAAG+GGG | 0.647748 | 5_4:+35207240 | Msa0848990:CDS |
| AAATATATACCTGGAGAGTG+AGG | 0.648464 | 5_4:-35206609 | None:intergenic |
| AAGTTTCAACTTGAGAACAA+GGG | 0.650258 | 5_4:+35206249 | Msa0848990:CDS |
| AGTCTTCAACATCACACAGA+CGG | 0.657617 | 5_4:-35205332 | None:intergenic |
| CATTCAATGTACTACCCTAG+AGG | 0.660587 | 5_4:+35207996 | Msa0848990:CDS |
| GTTTCTAGCAACTTAACGTG+GGG | 0.663290 | 5_4:+35206339 | Msa0848990:CDS |
| GCAAAGATTTAAAATCGTCG+AGG | 0.672808 | 5_4:-35206221 | None:intergenic |
| ATAAGAAGTTATCTAAACAG+AGG | 0.674336 | 5_4:-35207276 | None:intergenic |
| TCTCTTCCTGGAAGGCTGAG+CGG | 0.680436 | 5_4:-35206808 | None:intergenic |
| GCAAACTACAAAATTCTGTG+TGG | 0.688012 | 5_4:-35207807 | None:intergenic |
| TATATACCTGGAGAGTGAGG+CGG | 0.703848 | 5_4:-35206606 | None:intergenic |
| GTCTCCACGACTAGAATACG+GGG | 0.705382 | 5_4:+35205614 | Msa0848990:CDS |
| ATTGAATGATCGGTCCTGGG+CGG | 0.719931 | 5_4:-35207981 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATGTTAGAAATATA+TGG | - | chr5_4:35206908-35206927 | None:intergenic | 10.0% |
| !!! | ATAATAAAGAAATTTTGAAG+AGG | - | chr5_4:35204828-35204847 | None:intergenic | 15.0% |
| !! | TAAGAATGTAAAGTAATATA+TGG | - | chr5_4:35204870-35204889 | None:intergenic | 15.0% |
| !!! | AATTTTTTTCCTTTGATTAT+TGG | + | chr5_4:35205084-35205103 | Msa0848990:intron | 15.0% |
| !! | ACTACAAAAAACAAAAAATT+CGG | - | chr5_4:35205211-35205230 | None:intergenic | 15.0% |
| !! | ACATAAATTATGAAAAAGAA+GGG | - | chr5_4:35205304-35205323 | None:intergenic | 15.0% |
| !! | TACATAAATTATGAAAAAGA+AGG | - | chr5_4:35205305-35205324 | None:intergenic | 15.0% |
| !!! | TTCTTTTTCATAATTTATGT+AGG | + | chr5_4:35205304-35205323 | Msa0848990:intron | 15.0% |
| !!! | TCTTTTTCATAATTTATGTA+GGG | + | chr5_4:35205305-35205324 | Msa0848990:intron | 15.0% |
| !! | AATAATAAAGAAAGAATTTC+AGG | - | chr5_4:35205757-35205776 | None:intergenic | 15.0% |
| !!! | ATTTTCATGGTTTTAAATAT+TGG | + | chr5_4:35205813-35205832 | Msa0848990:intron | 15.0% |
| !! | AAAATAATAATAAACGAGAA+TGG | - | chr5_4:35205875-35205894 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTCCTTTGATTAT+TGG | + | chr5_4:35206739-35206758 | Msa0848990:intron | 15.0% |
| !!! | AACAAAAAAAAAGGTATTAA+TGG | - | chr5_4:35207705-35207724 | None:intergenic | 15.0% |
| !!! | TCATTTTTTCCTTTGATTAT+TGG | + | chr5_4:35204727-35204746 | Msa0848990:intron | 20.0% |
| !! | ACTGAAAAAATAGACATATA+TGG | - | chr5_4:35204765-35204784 | None:intergenic | 20.0% |
| !! | AATGATTGTAAAAATATACC+TGG | - | chr5_4:35205023-35205042 | None:intergenic | 20.0% |
| !! | TTTAATTGTGAAAATGAGTT+TGG | + | chr5_4:35205894-35205913 | Msa0848990:intron | 20.0% |
| !! | TGCATAAATTTGAAAACAAA+TGG | - | chr5_4:35206167-35206186 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTCAAATTTATGC+AGG | + | chr5_4:35206166-35206185 | Msa0848990:intron | 20.0% |
| !! | AAAAATATTTACAATGCCAT+TGG | + | chr5_4:35206441-35206460 | Msa0848990:CDS | 20.0% |
| !! | ATAGAGAAAGAAAACATATA+TGG | - | chr5_4:35206777-35206796 | None:intergenic | 20.0% |
| !!! | ACAAAGAAAAAGGTATTAAT+TGG | - | chr5_4:35207037-35207056 | None:intergenic | 20.0% |
| !! | AAAATAACACAATACATCTA+TGG | - | chr5_4:35206869-35206888 | None:intergenic | 20.0% |
| !! | AAAGAAGAATGTAAGTAATA+TGG | - | chr5_4:35207115-35207134 | None:intergenic | 20.0% |
| !! | CAATTATGTAATGAAATATC+AGG | - | chr5_4:35207536-35207555 | None:intergenic | 20.0% |
| !!! | TAATACCTTTTTTTTTGTTG+TGG | + | chr5_4:35207706-35207725 | Msa0848990:intron | 20.0% |
| !!! | TTCTTTTCATAATTTATGCA+GGG | + | chr5_4:35207753-35207772 | Msa0848990:intron | 20.0% |
| ! | TGAATGTATGTAAATATACC+TGG | - | chr5_4:35204645-35204664 | None:intergenic | 25.0% |
| !!! | TTTTTTCCTTTGATTATTGG+CGG | + | chr5_4:35204730-35204749 | Msa0848990:intron | 25.0% |
| !!! | TTTTTTCCTTTGATTATTGG+TGG | + | chr5_4:35204730-35204749 | Msa0848990:intron | 25.0% |
| !! | AAAGCTATTTGCAATGTTTT+TGG | + | chr5_4:35205570-35205589 | Msa0848990:CDS | 25.0% |
| !!! | ATTGCATGTATTTTGTTATG+CGG | + | chr5_4:35205782-35205801 | Msa0848990:intron | 25.0% |
| !! | ATTTTTAACAAGACATCATC+TGG | + | chr5_4:35205973-35205992 | Msa0848990:intron | 25.0% |
| !!! | CAGAAAAACTGTTTTAAACA+CGG | + | chr5_4:35206002-35206021 | Msa0848990:intron | 25.0% |
| ! | AAGAGTTTATAGTTTCAAAC+TGG | - | chr5_4:35206043-35206062 | None:intergenic | 25.0% |
| ! | ATCTGTCATAATAGAATAGT+AGG | - | chr5_4:35206316-35206335 | None:intergenic | 25.0% |
| !!! | TTTGTAGTTTTACAAGTCTT+GGG | - | chr5_4:35206414-35206433 | None:intergenic | 25.0% |
| !!! | TTTTGTAGTTTTACAAGTCT+TGG | - | chr5_4:35206415-35206434 | None:intergenic | 25.0% |
| !! | TGTTCAAAATGATGATGATT+AGG | + | chr5_4:35206695-35206714 | Msa0848990:intron | 25.0% |
| !!! | TTTTTTCCTTTGATTATTGG+TGG | + | chr5_4:35204730-35204749 | Msa0848990:intron | 25.0% |
| ! | CATCTATGTAATGAAATATC+AGG | - | chr5_4:35206855-35206874 | None:intergenic | 25.0% |
| ! | ATAAGAAGTTATCTAAACAG+AGG | - | chr5_4:35207279-35207298 | None:intergenic | 25.0% |
| ! | TGTATGTGTAAATATATACC+TGG | - | chr5_4:35207307-35207326 | None:intergenic | 25.0% |
| !! | TCAACTTTTCCTTTGATTAT+TGG | + | chr5_4:35207416-35207435 | Msa0848990:intron | 25.0% |
| !!! | TTTCACTCTTTTTTCAGTTA+CGG | + | chr5_4:35207469-35207488 | Msa0848990:intron | 25.0% |
| !! | GAAATATCAGGATTTTGAAT+AGG | - | chr5_4:35207524-35207543 | None:intergenic | 25.0% |
| !! | GTTCTTTTCATAATTTATGC+AGG | + | chr5_4:35207752-35207771 | Msa0848990:intron | 25.0% |
| !! | AAGTTGGATTTAAAATCCTA+TGG | + | chr5_4:35207880-35207899 | Msa0848990:CDS | 25.0% |
| ! | TACTTCTTAGCAACAAAAAT+GGG | + | chr5_4:35207920-35207939 | Msa0848990:CDS | 25.0% |
| ! | TTTTGTGCAAGATGATGATT+AGG | + | chr5_4:35205042-35205061 | Msa0848990:intron | 30.0% |
| AAACTACCACCAATAATCAA+AGG | - | chr5_4:35205096-35205115 | None:intergenic | 30.0% | |
| !! | TGATTATTGGTGGTAGTTTT+TGG | + | chr5_4:35205097-35205116 | Msa0848990:intron | 30.0% |
| GAATCATCTTCCTTCTTTAT+TGG | + | chr5_4:35205129-35205148 | Msa0848990:CDS | 30.0% | |
| TTCTTGTCAACCAATAAAGA+AGG | - | chr5_4:35205142-35205161 | None:intergenic | 30.0% | |
| CTTCAAACTTAATAAGCCTT+TGG | + | chr5_4:35205264-35205283 | Msa0848990:intron | 30.0% | |
| TTATGAAAAAGAAGGGTTTC+AGG | - | chr5_4:35205297-35205316 | None:intergenic | 30.0% | |
| AAATTGCGAAAAATCTACTC+TGG | + | chr5_4:35205454-35205473 | Msa0848990:CDS | 30.0% | |
| !!! | TAAGTGCTTATTTTGTAACG+TGG | + | chr5_4:35205844-35205863 | Msa0848990:intron | 30.0% |
| TAAACCTGTTTCGAACTTAA+TGG | + | chr5_4:35206065-35206084 | Msa0848990:intron | 30.0% | |
| AAGAAACAGAATCATACTAG+GGG | - | chr5_4:35206129-35206148 | None:intergenic | 30.0% | |
| GAAGAAACAGAATCATACTA+GGG | - | chr5_4:35206130-35206149 | None:intergenic | 30.0% | |
| AGAAGAAACAGAATCATACT+AGG | - | chr5_4:35206131-35206150 | None:intergenic | 30.0% | |
| ! | GACGATTTTAAATCTTTGCT+TGG | + | chr5_4:35206225-35206244 | Msa0848990:CDS | 30.0% |
| AAGTTTCAACTTGAGAACAA+GGG | + | chr5_4:35206249-35206268 | Msa0848990:CDS | 30.0% | |
| TGTGTGTGTAAATATATACC+TGG | - | chr5_4:35206621-35206640 | None:intergenic | 30.0% | |
| !! | GAAATATCAGGATTTTGAAG+AGG | - | chr5_4:35206843-35206862 | None:intergenic | 30.0% |
| AGAGAGACAAACAAAGAAAA+AGG | - | chr5_4:35207047-35207066 | None:intergenic | 30.0% | |
| ! | TGTGCAAAATGATGATGATT+GGG | + | chr5_4:35207374-35207393 | Msa0848990:intron | 30.0% |
| ! | ACTTTTCCTTTGATTATTGG+TGG | + | chr5_4:35207419-35207438 | Msa0848990:intron | 30.0% |
| AGAGTGAAAGAAAACATGTA+TGG | - | chr5_4:35207458-35207477 | None:intergenic | 30.0% | |
| GAGTTCCACAACAAAAAAAA+AGG | - | chr5_4:35207714-35207733 | None:intergenic | 30.0% | |
| ATGAAAAGAACCGAAAACAA+GGG | - | chr5_4:35207743-35207762 | None:intergenic | 30.0% | |
| TATGAAAAGAACCGAAAACA+AGG | - | chr5_4:35207744-35207763 | None:intergenic | 30.0% | |
| ! | TTTTCATAATTTATGCAGGG+AGG | + | chr5_4:35207756-35207775 | Msa0848990:intron | 30.0% |
| ! | TTTGCTTCAAAAGTATACTC+AGG | + | chr5_4:35207825-35207844 | Msa0848990:CDS | 30.0% |
| TTGGATACATTGAAAGAGAT+TGG | - | chr5_4:35207859-35207878 | None:intergenic | 30.0% | |
| TTTCAATGTATCCAACAAGT+TGG | + | chr5_4:35207864-35207883 | Msa0848990:CDS | 30.0% | |
| ! | GGATTTTAAATCCAACTTGT+TGG | - | chr5_4:35207878-35207897 | None:intergenic | 30.0% |
| AAAATCCTATGGTCAAATTG+TGG | + | chr5_4:35207891-35207910 | Msa0848990:CDS | 30.0% | |
| CTACTTCTTAGCAACAAAAA+TGG | + | chr5_4:35207919-35207938 | Msa0848990:CDS | 30.0% | |
| !!! | AGCATTTTTTATCTCCTCTA+GGG | - | chr5_4:35208013-35208032 | None:intergenic | 30.0% |
| !!! | AAGCATTTTTTATCTCCTCT+AGG | - | chr5_4:35208014-35208033 | None:intergenic | 30.0% |
| GGAGATAAAAAATGCTTACA+AGG | + | chr5_4:35208017-35208036 | Msa0848990:CDS | 30.0% | |
| AAAAATGCTTACAAGGCTAT+TGG | + | chr5_4:35208024-35208043 | Msa0848990:CDS | 30.0% | |
| ! | ACGAGTTGAATCTGATGATT+AGG | + | chr5_4:35204685-35204704 | Msa0848990:intron | 35.0% |
| ! | CGAGTTGAATCTGATGATTA+GGG | + | chr5_4:35204686-35204705 | Msa0848990:intron | 35.0% |
| TACCTGGAGACCTATATAAA+CGG | - | chr5_4:35205007-35205026 | None:intergenic | 35.0% | |
| TAAGACGAGCACAAATATCT+GGG | - | chr5_4:35205359-35205378 | None:intergenic | 35.0% | |
| TTAAGACGAGCACAAATATC+TGG | - | chr5_4:35205360-35205379 | None:intergenic | 35.0% | |
| TAACTGAAATTTGCGCATCT+CGG | - | chr5_4:35205664-35205683 | None:intergenic | 35.0% | |
| GATGCGCAAATTTCAGTTAA+AGG | + | chr5_4:35205665-35205684 | Msa0848990:CDS | 35.0% | |
| GCAAATTTCAGTTAAAGGCT+CGG | + | chr5_4:35205670-35205689 | Msa0848990:CDS | 35.0% | |
| GAATTTCAGGAAACTTACCT+GGG | - | chr5_4:35205744-35205763 | None:intergenic | 35.0% | |
| AGAATTTCAGGAAACTTACC+TGG | - | chr5_4:35205745-35205764 | None:intergenic | 35.0% | |
| ! | TGCGGATACAAACATTTTCA+TGG | + | chr5_4:35205800-35205819 | Msa0848990:intron | 35.0% |
| CAAACCATTAAGTTCGAAAC+AGG | - | chr5_4:35206072-35206091 | None:intergenic | 35.0% | |
| ! | GCAAAGATTTAAAATCGTCG+AGG | - | chr5_4:35206224-35206243 | None:intergenic | 35.0% |
| CAAGTTTCAACTTGAGAACA+AGG | + | chr5_4:35206248-35206267 | Msa0848990:CDS | 35.0% | |
| !! | TAGTTTCTAGCAACTTAACG+TGG | + | chr5_4:35206337-35206356 | Msa0848990:CDS | 35.0% |
| !! | AGTTTCTAGCAACTTAACGT+GGG | + | chr5_4:35206338-35206357 | Msa0848990:CDS | 35.0% |
| AGATTGTAACCCTAGTATGT+TGG | + | chr5_4:35206491-35206510 | Msa0848990:CDS | 35.0% | |
| CCATTTGATCCAACATACTA+GGG | - | chr5_4:35206503-35206522 | None:intergenic | 35.0% | |
| TCCATTTGATCCAACATACT+AGG | - | chr5_4:35206504-35206523 | None:intergenic | 35.0% | |
| ! | TGGATCAAATGGACTCATAT+CGG | + | chr5_4:35206511-35206530 | Msa0848990:CDS | 35.0% |
| ACTCATATCGGATAATTGCT+GGG | + | chr5_4:35206523-35206542 | Msa0848990:CDS | 35.0% | |
| AAATATATACCTGGAGAGTG+AGG | - | chr5_4:35206612-35206631 | None:intergenic | 35.0% | |
| CAACTACCACCAATAATCAA+AGG | - | chr5_4:35206751-35206770 | None:intergenic | 35.0% | |
| ACAAAGCAAGAAAGTAAGAG+AGG | - | chr5_4:35206998-35207017 | None:intergenic | 35.0% | |
| TTAATTGATCGCTCTCTAGA+AGG | + | chr5_4:35207238-35207257 | Msa0848990:CDS | 35.0% | |
| ! | TAATTGATCGCTCTCTAGAA+GGG | + | chr5_4:35207239-35207258 | Msa0848990:CDS | 35.0% |
| GATAACTTCTTATACTCTCC+AGG | + | chr5_4:35207286-35207305 | Msa0848990:CDS | 35.0% | |
| ! | CTGTGCAAAATGATGATGAT+TGG | + | chr5_4:35207373-35207392 | Msa0848990:intron | 35.0% |
| ! | GTGCAAAATGATGATGATTG+GGG | + | chr5_4:35207375-35207394 | Msa0848990:intron | 35.0% |
| TACGTACCACCAATAATCAA+AGG | - | chr5_4:35207428-35207447 | None:intergenic | 35.0% | |
| !!! | CTTTTTTTTTTCTCACTGCC+AGG | + | chr5_4:35207587-35207606 | Msa0848990:intron | 35.0% |
| ACAAAGCAAGAAAGTAAGAG+AGG | - | chr5_4:35206998-35207017 | None:intergenic | 35.0% | |
| TTGCAACATCCACAAGAATT+TGG | - | chr5_4:35207786-35207805 | None:intergenic | 35.0% | |
| GCAAACTACAAAATTCTGTG+TGG | - | chr5_4:35207810-35207829 | None:intergenic | 35.0% | |
| TTCTTAGCAACAAAAATGGG+AGG | + | chr5_4:35207923-35207942 | Msa0848990:CDS | 35.0% | |
| AGGGTAGTACATTGAATGAT+CGG | - | chr5_4:35207994-35208013 | None:intergenic | 35.0% | |
| CTAAAAGTGACGCAAAATCT+TGG | - | chr5_4:35208133-35208152 | None:intergenic | 35.0% | |
| CAACTACCGCCAATAATCAA+AGG | - | chr5_4:35204739-35204758 | None:intergenic | 40.0% | |
| TTACGTTCTCTTTCTCTTCC+TGG | - | chr5_4:35204802-35204821 | None:intergenic | 40.0% | |
| ! | GTTCTTTTGCTGGACAAACT+AGG | - | chr5_4:35204960-35204979 | None:intergenic | 40.0% |
| ACAAGAAGAAGAAGCCTATC+AGG | + | chr5_4:35205155-35205174 | Msa0848990:CDS | 40.0% | |
| TGAAAAAGAAGGGTTTCAGG+TGG | - | chr5_4:35205294-35205313 | None:intergenic | 40.0% | |
| AGTCTTCAACATCACACAGA+CGG | - | chr5_4:35205335-35205354 | None:intergenic | 40.0% | |
| !! | GATACTCTGAAATAGACTGG+TGG | - | chr5_4:35205405-35205424 | None:intergenic | 40.0% |
| !! | TCGGATACTCTGAAATAGAC+TGG | - | chr5_4:35205408-35205427 | None:intergenic | 40.0% |
| GTACACTTCATGCAAGGATT+CGG | - | chr5_4:35205427-35205446 | None:intergenic | 40.0% | |
| TCCTTGCATGAAGTGTACTA+CGG | + | chr5_4:35205429-35205448 | Msa0848990:CDS | 40.0% | |
| ACAACACTGCGACATAAGAT+AGG | - | chr5_4:35205543-35205562 | None:intergenic | 40.0% | |
| ACATGATGACCTTCCAATGA+CGG | - | chr5_4:35205596-35205615 | None:intergenic | 40.0% | |
| ATGTCTCCACGACTAGAATA+CGG | + | chr5_4:35205612-35205631 | Msa0848990:CDS | 40.0% | |
| TTTCAGTTAAAGGCTCGGAT+TGG | + | chr5_4:35205675-35205694 | Msa0848990:CDS | 40.0% | |
| TTCGTGGTTCATAATTCGTC+TGG | - | chr5_4:35206104-35206123 | None:intergenic | 40.0% | |
| !! | GTTTCTAGCAACTTAACGTG+GGG | + | chr5_4:35206339-35206358 | Msa0848990:CDS | 40.0% |
| TGCAAGTAGTGATTGGATCT+TGG | - | chr5_4:35206387-35206406 | None:intergenic | 40.0% | |
| !!! | GCATTTTGACTCTCCAATAG+GGG | - | chr5_4:35206467-35206486 | None:intergenic | 40.0% |
| !!! | CGCATTTTGACTCTCCAATA+GGG | - | chr5_4:35206468-35206487 | None:intergenic | 40.0% |
| !!! | ACGCATTTTGACTCTCCAAT+AGG | - | chr5_4:35206469-35206488 | None:intergenic | 40.0% |
| CCCTAGTATGTTGGATCAAA+TGG | + | chr5_4:35206500-35206519 | Msa0848990:CDS | 40.0% | |
| GACTCATATCGGATAATTGC+TGG | + | chr5_4:35206522-35206541 | Msa0848990:CDS | 40.0% | |
| ACAGTGATCCACTATTAAGC+TGG | + | chr5_4:35206559-35206578 | Msa0848990:CDS | 40.0% | |
| TTGCTAGTCCAGCTTAATAG+TGG | - | chr5_4:35206570-35206589 | None:intergenic | 40.0% | |
| !!! | CATTTTTTTCTCTCACTGCC+AGG | + | chr5_4:35206919-35206938 | Msa0848990:intron | 40.0% |
| CTTCTTCCATTTGTACAACC+TGG | - | chr5_4:35206940-35206959 | None:intergenic | 40.0% | |
| AGAGCGATCAATTAACCTAG+GGG | - | chr5_4:35207233-35207252 | None:intergenic | 40.0% | |
| GAGAGCGATCAATTAACCTA+GGG | - | chr5_4:35207234-35207253 | None:intergenic | 40.0% | |
| AGAGAGCGATCAATTAACCT+AGG | - | chr5_4:35207235-35207254 | None:intergenic | 40.0% | |
| ! | AATTGATCGCTCTCTAGAAG+GGG | + | chr5_4:35207240-35207259 | Msa0848990:CDS | 40.0% |
| !! | GTTATCTAAACAGAGGCGTT+TGG | - | chr5_4:35207272-35207291 | None:intergenic | 40.0% |
| GATGATGATTGGGGTTTAAG+TGG | + | chr5_4:35207384-35207403 | Msa0848990:intron | 40.0% | |
| CTTCTTCCATTTGTACAACC+TGG | - | chr5_4:35206940-35206959 | None:intergenic | 40.0% | |
| !!! | ACTCCTCAAACCCTTGTTTT+CGG | + | chr5_4:35207730-35207749 | Msa0848990:intron | 40.0% |
| TCCTATGGTCAAATTGTGGA+TGG | + | chr5_4:35207895-35207914 | Msa0848990:CDS | 40.0% | |
| ACCATCCACAATTTGACCAT+AGG | - | chr5_4:35207899-35207918 | None:intergenic | 40.0% | |
| TACATTGAATGATCGGTCCT+GGG | - | chr5_4:35207987-35208006 | None:intergenic | 40.0% | |
| CATTCAATGTACTACCCTAG+AGG | + | chr5_4:35207996-35208015 | Msa0848990:CDS | 40.0% | |
| GTAAGCCTCATCACAAATGT+TGG | - | chr5_4:35208064-35208083 | None:intergenic | 40.0% | |
| GTTCTCTTTCTCTTCCTGGA+AGG | - | chr5_4:35204798-35204817 | None:intergenic | 45.0% | |
| ! | TTTTGCTGGACAAACTAGGC+AGG | - | chr5_4:35204956-35204975 | None:intergenic | 45.0% |
| !!! | AGAGGGTTTGGTTCTTTTGC+TGG | - | chr5_4:35204970-35204989 | None:intergenic | 45.0% |
| ACACTCACCGCCGTTTATAT+AGG | + | chr5_4:35204994-35205013 | Msa0848990:intron | 45.0% | |
| CTGGAGACCTATATAAACGG+CGG | - | chr5_4:35205004-35205023 | None:intergenic | 45.0% | |
| !!! | GGTGGTAGTTTTTGGCTTGA+AGG | + | chr5_4:35205105-35205124 | Msa0848990:intron | 45.0% |
| AACGAGACGACTTACCTGAT+AGG | - | chr5_4:35205172-35205191 | None:intergenic | 45.0% | |
| ACCGTAGTACACTTCATGCA+AGG | - | chr5_4:35205433-35205452 | None:intergenic | 45.0% | |
| !!! | GCAATGTTTTTGGCCGTCAT+TGG | + | chr5_4:35205580-35205599 | Msa0848990:CDS | 45.0% |
| !!! | TGTTTTTGGCCGTCATTGGA+AGG | + | chr5_4:35205584-35205603 | Msa0848990:CDS | 45.0% |
| TGTCTCCACGACTAGAATAC+GGG | + | chr5_4:35205613-35205632 | Msa0848990:CDS | 45.0% | |
| TTGCAAGACTGCGAGACTAT+TGG | + | chr5_4:35205638-35205657 | Msa0848990:CDS | 45.0% | |
| AAATCCGAGCCTTCTCTTCT+TGG | - | chr5_4:35205721-35205740 | None:intergenic | 45.0% | |
| TGAAAAGATGCGAGCTCTGT+TGG | + | chr5_4:35205927-35205946 | Msa0848990:intron | 45.0% | |
| GAAAAGATGCGAGCTCTGTT+GGG | + | chr5_4:35205928-35205947 | Msa0848990:intron | 45.0% | |
| AAAAGATGCGAGCTCTGTTG+GGG | + | chr5_4:35205929-35205948 | Msa0848990:intron | 45.0% | |
| !! | AATCATACTAGGGGTGTTCG+TGG | - | chr5_4:35206120-35206139 | None:intergenic | 45.0% |
| GAAAACAAATGGACGCAGTG+AGG | - | chr5_4:35206156-35206175 | None:intergenic | 45.0% | |
| ! | GGGCTTTTGCAAGTAGTGAT+TGG | - | chr5_4:35206394-35206413 | None:intergenic | 45.0% |
| TATATACCTGGAGAGTGAGG+CGG | - | chr5_4:35206609-35206628 | None:intergenic | 45.0% | |
| CTTTACCTTCTCTTCCTGGA+AGG | - | chr5_4:35206819-35206838 | None:intergenic | 45.0% | |
| AGGACTTTACCTTCTCTTCC+TGG | - | chr5_4:35206823-35206842 | None:intergenic | 45.0% | |
| TCACTGCCAGGTTGTACAAA+TGG | + | chr5_4:35206931-35206950 | Msa0848990:intron | 45.0% | |
| AGAAGATTAAGAAGCCGTCC+AGG | + | chr5_4:35206958-35206977 | Msa0848990:CDS | 45.0% | |
| GAAGATTAAGAAGCCGTCCA+GGG | + | chr5_4:35206959-35206978 | Msa0848990:CDS | 45.0% | |
| AATTAACCTAGGGGGAGAGA+GGG | - | chr5_4:35207224-35207243 | None:intergenic | 45.0% | |
| GAGCGATCAATTAACCTAGG+GGG | - | chr5_4:35207232-35207251 | None:intergenic | 45.0% | |
| CTTTACCTTCTCTTCCTGGA+AGG | - | chr5_4:35206819-35206838 | None:intergenic | 45.0% | |
| AGGACTTTACCTTCTCTTCC+TGG | - | chr5_4:35206823-35206842 | None:intergenic | 45.0% | |
| TCACTGCCAGGTTGTACAAA+TGG | + | chr5_4:35206931-35206950 | Msa0848990:intron | 45.0% | |
| AGAAGATTAAGAAGCCGTCC+AGG | + | chr5_4:35206958-35206977 | Msa0848990:CDS | 45.0% | |
| GAAGATTAAGAAGCCGTCCA+GGG | + | chr5_4:35206959-35206978 | Msa0848990:CDS | 45.0% | |
| GAACCGAAAACAAGGGTTTG+AGG | - | chr5_4:35207736-35207755 | None:intergenic | 45.0% | |
| GTACATTGAATGATCGGTCC+TGG | - | chr5_4:35207988-35208007 | None:intergenic | 45.0% | |
| ACAAGGCTATTGGTCGTTGT+TGG | + | chr5_4:35208034-35208053 | Msa0848990:CDS | 45.0% | |
| ACAAACTAGGCAGGCAGAGA+GGG | - | chr5_4:35204947-35204966 | None:intergenic | 50.0% | |
| GTGAGTGTGAGAAGAGGGTT+TGG | - | chr5_4:35204982-35205001 | None:intergenic | 50.0% | |
| CGCCGTTTATATAGGTCTCC+AGG | + | chr5_4:35205002-35205021 | Msa0848990:intron | 50.0% | |
| ! | GGTTTCAGGTGGTGTTCCAA+AGG | - | chr5_4:35205283-35205302 | None:intergenic | 50.0% |
| !! | CTCTGGAGCAACTCATTGTC+AGG | + | chr5_4:35205471-35205490 | Msa0848990:CDS | 50.0% |
| ATAGGTCCCTGGCAGTGATT+GGG | - | chr5_4:35205525-35205544 | None:intergenic | 50.0% | |
| TGCGACATAAGATAGGTCCC+TGG | - | chr5_4:35205536-35205555 | None:intergenic | 50.0% | |
| GTCTCCACGACTAGAATACG+GGG | + | chr5_4:35205614-35205633 | Msa0848990:CDS | 50.0% | |
| CAATCCCCGTATTCTAGTCG+TGG | - | chr5_4:35205621-35205640 | None:intergenic | 50.0% | |
| TTCTCTTCTTGGACGGCTGA+GGG | - | chr5_4:35205710-35205729 | None:intergenic | 50.0% | |
| GGATTCTGTGTTCACTGCGT+TGG | - | chr5_4:35206295-35206314 | None:intergenic | 50.0% | |
| ACAATGCCATTGGCCCCTAT+TGG | + | chr5_4:35206451-35206470 | Msa0848990:CDS | 50.0% | |
| ACTTACACACTCTCCCTGGA+CGG | - | chr5_4:35206975-35206994 | None:intergenic | 50.0% | |
| CAATTAACCTAGGGGGAGAG+AGG | - | chr5_4:35207225-35207244 | None:intergenic | 50.0% | |
| ACTTACACACTCTCCCTGGA+CGG | - | chr5_4:35206975-35206994 | None:intergenic | 50.0% | |
| ! | GGAGGTGCACCAAATTCTTG+TGG | + | chr5_4:35207774-35207793 | Msa0848990:CDS | 50.0% |
| ATTGAATGATCGGTCCTGGG+CGG | - | chr5_4:35207984-35208003 | None:intergenic | 50.0% | |
| AGGCTATTGGTCGTTGTTGG+AGG | + | chr5_4:35208037-35208056 | Msa0848990:CDS | 50.0% | |
| GGCTATTGGTCGTTGTTGGA+GGG | + | chr5_4:35208038-35208057 | Msa0848990:CDS | 50.0% | |
| GAGGGCCAACATTTGTGATG+AGG | + | chr5_4:35208056-35208075 | Msa0848990:CDS | 50.0% | |
| TCTCTTCCTGGAAGGCTGAG+CGG | - | chr5_4:35204790-35204809 | None:intergenic | 55.0% | |
| GACAAACTAGGCAGGCAGAG+AGG | - | chr5_4:35204948-35204967 | None:intergenic | 55.0% | |
| TCCAAGACCCAATCACTGCC+AGG | + | chr5_4:35205515-35205534 | Msa0848990:CDS | 55.0% | |
| CCAAGACCCAATCACTGCCA+GGG | + | chr5_4:35205516-35205535 | Msa0848990:CDS | 55.0% | |
| GATAGGTCCCTGGCAGTGAT+TGG | - | chr5_4:35205526-35205545 | None:intergenic | 55.0% | |
| TCTCTTCTTGGACGGCTGAG+GGG | - | chr5_4:35205709-35205728 | None:intergenic | 55.0% | |
| CTTCTCTTCTTGGACGGCTG+AGG | - | chr5_4:35205711-35205730 | None:intergenic | 55.0% | |
| CTCAGCCGTCCAAGAAGAGA+AGG | + | chr5_4:35205709-35205728 | Msa0848990:CDS | 55.0% | |
| CCGAGCCTTCTCTTCTTGGA+CGG | - | chr5_4:35205717-35205736 | None:intergenic | 55.0% | |
| CCGTCCAAGAAGAGAAGGCT+CGG | + | chr5_4:35205714-35205733 | Msa0848990:CDS | 55.0% | |
| AGAGAAGGCTCGGATTTCCC+AGG | + | chr5_4:35205724-35205743 | Msa0848990:CDS | 55.0% | |
| GACTCTCCAATAGGGGCCAA+TGG | - | chr5_4:35206460-35206479 | None:intergenic | 55.0% | |
| TCTCTTCCTGGAAGGCTGAG+CGG | - | chr5_4:35204790-35204809 | None:intergenic | 55.0% | |
| CTCAGCCTTCCAGGAAGAGA+AGG | + | chr5_4:35204790-35204809 | Msa0848990:intron | 55.0% | |
| GAGGACTTACACACTCTCCC+TGG | - | chr5_4:35206979-35206998 | None:intergenic | 55.0% | |
| ! | TGATCGCTCTCTAGAAGGGG+AGG | + | chr5_4:35207243-35207262 | Msa0848990:CDS | 55.0% |
| GAGGACTTACACACTCTCCC+TGG | - | chr5_4:35206979-35206998 | None:intergenic | 55.0% | |
| CAGTTACCGCTCAGCCTTCC+AGG | + | chr5_4:35204781-35204800 | Msa0848990:intron | 60.0% | |
| ACTAGGCAGGCAGAGAGGGA+GGG | - | chr5_4:35204943-35204962 | None:intergenic | 60.0% | |
| AACTAGGCAGGCAGAGAGGG+AGG | - | chr5_4:35204944-35204963 | None:intergenic | 60.0% | |
| CGGCGGTGAGTGTGAGAAGA+GGG | - | chr5_4:35204987-35205006 | None:intergenic | 60.0% | |
| ACGGCGGTGAGTGTGAGAAG+AGG | - | chr5_4:35204988-35205007 | None:intergenic | 60.0% | |
| CCCTGGCAGTGATTGGGTCT+TGG | - | chr5_4:35205519-35205538 | None:intergenic | 60.0% | |
| TTAGAGCCGCCTCACTCTCC+AGG | + | chr5_4:35206600-35206619 | Msa0848990:CDS | 60.0% | |
| CAGTTACCGCTCAGCCTTCC+AGG | + | chr5_4:35204781-35204800 | Msa0848990:intron | 60.0% | |
| CGCAGCCTTCCAGGAAGAGA+AGG | + | chr5_4:35207492-35207511 | Msa0848990:CDS | 60.0% | |
| CTCTCTCCCTCTCTCCCCCT+AGG | + | chr5_4:35207215-35207234 | Msa0848990:intron | 65.0% | |
| CAGTTACGGCGCAGCCTTCC+AGG | + | chr5_4:35207483-35207502 | Msa0848990:intron | 65.0% | |
| ATCGGTCCTGGGCGGTGATC+GGG | - | chr5_4:35207976-35207995 | None:intergenic | 65.0% | |
| GATCGGTCCTGGGCGGTGAT+CGG | - | chr5_4:35207977-35207996 | None:intergenic | 65.0% | |
| GGCAGGCAGAGAGGGAGGGA+GGG | - | chr5_4:35204939-35204958 | None:intergenic | 70.0% | |
| AGGCAGGCAGAGAGGGAGGG+AGG | - | chr5_4:35204940-35204959 | None:intergenic | 70.0% | |
| CCTGGGCGGTGATCGGGTCT+TGG | - | chr5_4:35207970-35207989 | None:intergenic | 70.0% | |
| CCAAGACCCGATCACCGCCC+AGG | + | chr5_4:35207967-35207986 | Msa0848990:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 35204630 | 35208152 | 35204630 | ID=Msa0848990;Name=Msa0848990 |
| chr5_4 | mRNA | 35204630 | 35208152 | 35204630 | ID=Msa0848990-mRNA-1;Parent=Msa0848990;Name=Msa0848990-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.77|0.5|0.8|1|1|10|0|511 |
| chr5_4 | exon | 35204630 | 35204645 | 35204630 | ID=Msa0848990-mRNA-1:exon:11797;Parent=Msa0848990-mRNA-1 |
| chr5_4 | exon | 35205113 | 35205176 | 35205113 | ID=Msa0848990-mRNA-1:exon:11798;Parent=Msa0848990-mRNA-1 |
| chr5_4 | exon | 35205326 | 35205745 | 35205326 | ID=Msa0848990-mRNA-1:exon:11799;Parent=Msa0848990-mRNA-1 |
| chr5_4 | exon | 35206188 | 35206621 | 35206188 | ID=Msa0848990-mRNA-1:exon:11800;Parent=Msa0848990-mRNA-1 |
| chr5_4 | exon | 35206805 | 35206832 | 35206805 | ID=Msa0848990-mRNA-1:exon:11801;Parent=Msa0848990-mRNA-1 |
| chr5_4 | exon | 35206941 | 35206988 | 35206941 | ID=Msa0848990-mRNA-1:exon:11802;Parent=Msa0848990-mRNA-1 |
| chr5_4 | exon | 35207237 | 35207307 | 35207237 | ID=Msa0848990-mRNA-1:exon:11803;Parent=Msa0848990-mRNA-1 |
| chr5_4 | exon | 35207486 | 35207513 | 35207486 | ID=Msa0848990-mRNA-1:exon:11804;Parent=Msa0848990-mRNA-1 |
| chr5_4 | exon | 35207609 | 35207656 | 35207609 | ID=Msa0848990-mRNA-1:exon:11805;Parent=Msa0848990-mRNA-1 |
| chr5_4 | exon | 35207774 | 35208152 | 35207774 | ID=Msa0848990-mRNA-1:exon:11806;Parent=Msa0848990-mRNA-1 |
| chr5_4 | CDS | 35204630 | 35204645 | 35204630 | ID=Msa0848990-mRNA-1:cds;Parent=Msa0848990-mRNA-1 |
| chr5_4 | CDS | 35205113 | 35205176 | 35205113 | ID=Msa0848990-mRNA-1:cds;Parent=Msa0848990-mRNA-1 |
| chr5_4 | CDS | 35205326 | 35205745 | 35205326 | ID=Msa0848990-mRNA-1:cds;Parent=Msa0848990-mRNA-1 |
| chr5_4 | CDS | 35206188 | 35206621 | 35206188 | ID=Msa0848990-mRNA-1:cds;Parent=Msa0848990-mRNA-1 |
| chr5_4 | CDS | 35206805 | 35206832 | 35206805 | ID=Msa0848990-mRNA-1:cds;Parent=Msa0848990-mRNA-1 |
| chr5_4 | CDS | 35206941 | 35206988 | 35206941 | ID=Msa0848990-mRNA-1:cds;Parent=Msa0848990-mRNA-1 |
| chr5_4 | CDS | 35207237 | 35207307 | 35207237 | ID=Msa0848990-mRNA-1:cds;Parent=Msa0848990-mRNA-1 |
| chr5_4 | CDS | 35207486 | 35207513 | 35207486 | ID=Msa0848990-mRNA-1:cds;Parent=Msa0848990-mRNA-1 |
| chr5_4 | CDS | 35207609 | 35207656 | 35207609 | ID=Msa0848990-mRNA-1:cds;Parent=Msa0848990-mRNA-1 |
| chr5_4 | CDS | 35207774 | 35208152 | 35207774 | ID=Msa0848990-mRNA-1:cds;Parent=Msa0848990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
