Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882310 | XP_024641798.1 | 98.471 | 785 | 11 | 1 | 1 | 784 | 1 | 785 | 0.0 | 1586 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882310 | sp|Q9LD18|POT4_ARATH | 76.172 | 789 | 183 | 4 | 1 | 784 | 1 | 789 | 0.0 | 1204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882310 | A0A396HDZ9 | 98.471 | 785 | 11 | 1 | 1 | 784 | 1 | 785 | 0.0 | 1586 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044440 | Msa0882310 | -0.825499 | 4.534497e-54 | -8.615850e-47 |
| Msa0044530 | Msa0882310 | 0.845024 | 5.255993e-59 | -8.615850e-47 |
| Msa0066890 | Msa0882310 | 0.811241 | 7.723734e-51 | -8.615850e-47 |
| Msa0091220 | Msa0882310 | 0.841696 | 4.062212e-58 | -8.615850e-47 |
| Msa0091240 | Msa0882310 | 0.848082 | 7.688446e-60 | -8.615850e-47 |
| Msa0619320 | Msa0882310 | 0.806294 | 8.820188e-50 | -8.615850e-47 |
| Msa0755480 | Msa0882310 | 0.800939 | 1.138965e-48 | -8.615850e-47 |
| Msa0823480 | Msa0882310 | 0.824656 | 7.172319e-54 | -8.615850e-47 |
| Msa0129930 | Msa0882310 | 0.802443 | 5.597215e-49 | -8.615850e-47 |
| Msa0133140 | Msa0882310 | 0.832782 | 7.767097e-56 | -8.615850e-47 |
| Msa0154880 | Msa0882310 | 0.822366 | 2.461540e-53 | -8.615850e-47 |
| Msa0154890 | Msa0882310 | 0.806830 | 6.800189e-50 | -8.615850e-47 |
| Msa0183310 | Msa0882310 | 0.838559 | 2.676145e-57 | -8.615850e-47 |
| Msa0421220 | Msa0882310 | 0.806943 | 6.435101e-50 | -8.615850e-47 |
| Msa0438150 | Msa0882310 | 0.986724 | 9.383068e-168 | -8.615850e-47 |
| Msa0463820 | Msa0882310 | 0.810148 | 1.331105e-50 | -8.615850e-47 |
| Msa0513580 | Msa0882310 | 0.803972 | 2.701003e-49 | -8.615850e-47 |
| Msa0882270 | Msa0882310 | 0.982344 | 7.521481e-155 | -8.615850e-47 |
| Msa0882310 | Msa0904590 | -0.801313 | 9.551000e-49 | -8.615850e-47 |
| Msa0882310 | Msa1011140 | 0.832389 | 9.721117e-56 | -8.615850e-47 |
| Msa0882310 | Msa1039440 | 0.828535 | 8.518023e-55 | -8.615850e-47 |
| Msa0882310 | Msa1098070 | 0.804718 | 1.888228e-49 | -8.615850e-47 |
| Msa0882310 | Msa1128520 | 0.822123 | 2.802907e-53 | -8.615850e-47 |
| Msa0882310 | Msa1219530 | 0.831777 | 1.377280e-55 | -8.615850e-47 |
| Msa0882310 | Msa1333220 | 0.813964 | 1.960138e-51 | -8.615850e-47 |
| Msa0882310 | Msa1338810 | 0.802398 | 5.718914e-49 | -8.615850e-47 |
| Msa0882310 | Msa1347040 | -0.800080 | 1.704356e-48 | -8.615850e-47 |
| Msa0882310 | Msa1352600 | 0.812624 | 3.860022e-51 | -8.615850e-47 |
| Msa0882310 | Msa1409360 | 0.831962 | 1.239713e-55 | -8.615850e-47 |
| Msa0882310 | Msa1425630 | 0.808940 | 2.418819e-50 | -8.615850e-47 |
| Msa0882310 | Msa1428230 | 0.842805 | 2.066555e-58 | -8.615850e-47 |
| Msa0882310 | Msa1430460 | 0.810428 | 1.158512e-50 | -8.615850e-47 |
| Msa0882310 | Msa1448410 | 0.814343 | 1.616582e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882310 | MtrunA17_Chr6g0461871 | 98.471 | 785 | 11 | 1 | 1 | 784 | 1 | 785 | 0.0 | 1586 |
| Msa0882310 | MtrunA17_Chr6g0451081 | 56.818 | 792 | 318 | 11 | 1 | 784 | 1 | 776 | 0.0 | 901 |
| Msa0882310 | MtrunA17_Chr8g0387661 | 57.347 | 769 | 316 | 6 | 25 | 784 | 27 | 792 | 0.0 | 886 |
| Msa0882310 | MtrunA17_Chr3g0128831 | 54.286 | 805 | 322 | 12 | 12 | 784 | 4 | 794 | 0.0 | 849 |
| Msa0882310 | MtrunA17_Chr5g0430731 | 53.411 | 777 | 326 | 6 | 9 | 784 | 13 | 754 | 0.0 | 847 |
| Msa0882310 | MtrunA17_Chr2g0297291 | 50.458 | 765 | 349 | 6 | 25 | 784 | 50 | 789 | 0.0 | 735 |
| Msa0882310 | MtrunA17_Chr4g0052401 | 49.084 | 764 | 359 | 4 | 25 | 784 | 50 | 787 | 0.0 | 715 |
| Msa0882310 | MtrunA17_Chr8g0393241 | 45.501 | 789 | 391 | 11 | 22 | 781 | 18 | 796 | 0.0 | 682 |
| Msa0882310 | MtrunA17_Chr8g0365001 | 46.094 | 768 | 399 | 5 | 19 | 784 | 86 | 840 | 0.0 | 682 |
| Msa0882310 | MtrunA17_Chr4g0055471 | 43.038 | 790 | 426 | 7 | 1 | 784 | 44 | 815 | 0.0 | 664 |
| Msa0882310 | MtrunA17_Chr7g0268981 | 42.632 | 760 | 379 | 6 | 25 | 782 | 67 | 771 | 0.0 | 635 |
| Msa0882310 | MtrunA17_Chr2g0279131 | 42.765 | 774 | 416 | 7 | 19 | 784 | 95 | 849 | 0.0 | 622 |
| Msa0882310 | MtrunA17_Chr5g0429991 | 41.720 | 779 | 409 | 7 | 23 | 784 | 99 | 849 | 0.0 | 593 |
| Msa0882310 | MtrunA17_Chr8g0380281 | 39.218 | 793 | 435 | 7 | 7 | 784 | 22 | 782 | 0.0 | 578 |
| Msa0882310 | MtrunA17_Chr5g0430571 | 46.599 | 588 | 243 | 7 | 197 | 784 | 19 | 535 | 1.00e-178 | 523 |
| Msa0882310 | MtrunA17_Chr8g0375411 | 42.613 | 643 | 345 | 7 | 24 | 656 | 28 | 656 | 1.29e-175 | 521 |
| Msa0882310 | MtrunA17_Chr5g0413721 | 58.275 | 429 | 166 | 5 | 7 | 425 | 5 | 430 | 1.37e-160 | 488 |
| Msa0882310 | MtrunA17_Chr5g0413721 | 49.589 | 365 | 173 | 4 | 422 | 784 | 516 | 871 | 1.32e-113 | 365 |
| Msa0882310 | MtrunA17_Chr8g0344561 | 40.954 | 608 | 311 | 8 | 177 | 784 | 13 | 572 | 2.20e-154 | 462 |
| Msa0882310 | MtrunA17_Chr2g0297311 | 54.987 | 391 | 173 | 1 | 33 | 423 | 58 | 445 | 4.66e-141 | 423 |
| Msa0882310 | MtrunA17_Chr8g0365031 | 43.619 | 431 | 237 | 2 | 197 | 623 | 40 | 468 | 1.10e-128 | 395 |
| Msa0882310 | MtrunA17_Chr8g0344591 | 42.058 | 447 | 236 | 3 | 177 | 623 | 13 | 436 | 7.27e-120 | 369 |
| Msa0882310 | MtrunA17_Chr2g0297321 | 43.052 | 367 | 182 | 6 | 423 | 784 | 3 | 347 | 1.28e-96 | 304 |
| Msa0882310 | MtrunA17_Chr5g0413751 | 57.386 | 176 | 75 | 0 | 423 | 598 | 133 | 308 | 1.17e-70 | 234 |
| Msa0882310 | MtrunA17_Chr5g0413751 | 57.609 | 92 | 34 | 1 | 87 | 173 | 47 | 138 | 6.10e-21 | 94.4 |
| Msa0882310 | MtrunA17_Chr5g0430551 | 66.013 | 153 | 52 | 0 | 25 | 177 | 11 | 163 | 2.12e-62 | 207 |
| Msa0882310 | MtrunA17_Chr8g0365041 | 49.505 | 202 | 83 | 5 | 1 | 192 | 42 | 234 | 1.50e-51 | 180 |
| Msa0882310 | MtrunA17_Chr8g0344581 | 55.844 | 154 | 60 | 4 | 25 | 177 | 4 | 150 | 1.88e-44 | 157 |
| Msa0882310 | MtrunA17_Chr8g0344551 | 55.195 | 154 | 61 | 4 | 25 | 177 | 4 | 150 | 2.97e-44 | 156 |
| Msa0882310 | MtrunA17_Chr1g0159401 | 40.517 | 116 | 62 | 2 | 175 | 290 | 12 | 120 | 1.77e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882310 | AT3G02050.1 | 76.172 | 789 | 183 | 4 | 1 | 784 | 1 | 789 | 0.0 | 1204 |
| Msa0882310 | AT4G23640.1 | 57.532 | 770 | 311 | 8 | 25 | 784 | 12 | 775 | 0.0 | 895 |
| Msa0882310 | AT1G70300.1 | 55.359 | 793 | 334 | 10 | 1 | 784 | 1 | 782 | 0.0 | 867 |
| Msa0882310 | AT2G40540.1 | 54.000 | 800 | 327 | 7 | 10 | 784 | 11 | 794 | 0.0 | 855 |
| Msa0882310 | AT2G40540.5 | 54.000 | 800 | 327 | 7 | 10 | 784 | 11 | 794 | 0.0 | 855 |
| Msa0882310 | AT2G40540.4 | 54.000 | 800 | 327 | 7 | 10 | 784 | 11 | 794 | 0.0 | 855 |
| Msa0882310 | AT2G40540.2 | 54.000 | 800 | 327 | 7 | 10 | 784 | 11 | 794 | 0.0 | 855 |
| Msa0882310 | AT2G40540.3 | 54.000 | 800 | 327 | 7 | 10 | 784 | 11 | 794 | 0.0 | 855 |
| Msa0882310 | AT5G14880.1 | 56.203 | 790 | 317 | 12 | 9 | 784 | 7 | 781 | 0.0 | 849 |
| Msa0882310 | AT2G30070.1 | 58.132 | 621 | 260 | 0 | 2 | 622 | 3 | 623 | 0.0 | 781 |
| Msa0882310 | AT2G30070.1 | 61.111 | 72 | 28 | 0 | 713 | 784 | 641 | 712 | 1.22e-22 | 103 |
| Msa0882310 | AT2G35060.4 | 48.276 | 754 | 361 | 6 | 33 | 784 | 66 | 792 | 0.0 | 706 |
| Msa0882310 | AT2G35060.1 | 48.276 | 754 | 361 | 6 | 33 | 784 | 66 | 792 | 0.0 | 706 |
| Msa0882310 | AT2G35060.3 | 48.276 | 754 | 361 | 6 | 33 | 784 | 66 | 792 | 0.0 | 706 |
| Msa0882310 | AT2G35060.2 | 48.212 | 755 | 361 | 7 | 33 | 784 | 66 | 793 | 0.0 | 702 |
| Msa0882310 | AT1G60160.1 | 45.038 | 786 | 407 | 7 | 1 | 784 | 65 | 827 | 0.0 | 702 |
| Msa0882310 | AT1G31120.1 | 48.404 | 752 | 368 | 4 | 33 | 784 | 65 | 796 | 0.0 | 697 |
| Msa0882310 | AT4G19960.2 | 47.694 | 759 | 381 | 6 | 29 | 784 | 62 | 807 | 0.0 | 674 |
| Msa0882310 | AT4G19960.1 | 46.710 | 775 | 381 | 7 | 29 | 784 | 62 | 823 | 0.0 | 665 |
| Msa0882310 | AT4G19960.3 | 46.115 | 785 | 381 | 7 | 29 | 784 | 62 | 833 | 0.0 | 661 |
| Msa0882310 | AT4G13420.1 | 42.746 | 772 | 407 | 9 | 12 | 782 | 46 | 783 | 0.0 | 637 |
| Msa0882310 | AT2G30070.2 | 56.773 | 502 | 217 | 0 | 121 | 622 | 2 | 503 | 0.0 | 625 |
| Msa0882310 | AT2G30070.2 | 61.111 | 72 | 28 | 0 | 713 | 784 | 521 | 592 | 9.10e-23 | 103 |
| Msa0882310 | AT4G33530.1 | 40.736 | 788 | 423 | 8 | 14 | 784 | 95 | 855 | 0.0 | 607 |
| Msa0882310 | AT5G09400.1 | 41.244 | 788 | 413 | 7 | 19 | 784 | 99 | 858 | 0.0 | 592 |
| Msa0882310 | AT4G19960.4 | 46.870 | 591 | 301 | 5 | 197 | 784 | 6 | 586 | 2.18e-177 | 522 |
| Msa0882310 | AT4G33530.2 | 40.063 | 639 | 342 | 6 | 162 | 784 | 14 | 627 | 7.30e-169 | 501 |
Find 193 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGTAACCATTGGATTTC+AGG | 0.110674 | 6_1:-31342270 | Msa0882310:CDS |
| TTTCAGGACATAACCTTAAT+TGG | 0.151323 | 6_1:-31342254 | Msa0882310:CDS |
| CTCTTTATTCGCTGCTTTGC+AGG | 0.205975 | 6_1:-31344222 | Msa0882310:CDS |
| ACCATAAGCATTTCCAATTA+AGG | 0.215797 | 6_1:+31342241 | None:intergenic |
| GTACTTTCTCCAGCTATTTC+AGG | 0.226069 | 6_1:-31344010 | Msa0882310:intron |
| GTGTTGCAGGACCTGTATTT+TGG | 0.244964 | 6_1:-31342484 | Msa0882310:intron |
| ATTGGGAAGCAAGTTAAATT+TGG | 0.262524 | 6_1:+31344195 | None:intergenic |
| CACACCTCGAAACACATATT+TGG | 0.267140 | 6_1:-31342341 | Msa0882310:CDS |
| ACGGGTACAAGGACATTAAA+AGG | 0.272084 | 6_1:-31340993 | Msa0882310:CDS |
| ATTGAAATGGTTACTAGGTT+TGG | 0.295346 | 6_1:-31341250 | Msa0882310:CDS |
| CTAGGAAAATCTAACCTAAA+TGG | 0.297810 | 6_1:+31340416 | None:intergenic |
| ACCTTAATTGGAAATGCTTA+TGG | 0.301902 | 6_1:-31342242 | Msa0882310:intron |
| TCATTCAAGTATGGTGAAAA+AGG | 0.303717 | 6_1:+31340292 | None:intergenic |
| TCTGAAGCTTCTTCATTTGA+TGG | 0.310126 | 6_1:-31340886 | Msa0882310:CDS |
| CAAAGCTTCGGTGTTGTATA+TGG | 0.317218 | 6_1:-31344533 | Msa0882310:CDS |
| TGGAGTTGATTCGAAGCTTC+TGG | 0.317444 | 6_1:+31340843 | None:intergenic |
| ACAGTTCTGGCATCGGTATC+AGG | 0.318446 | 6_1:-31343408 | Msa0882310:intron |
| AGGATGTAAAATTTACAAAA+TGG | 0.320235 | 6_1:+31340312 | None:intergenic |
| GAAGATGAAGCTATGGATTC+TGG | 0.325547 | 6_1:+31345898 | None:intergenic |
| GGCTGGAGTTGCGTATATAA+TGG | 0.328115 | 6_1:-31340614 | Msa0882310:CDS |
| TTGAAATGGTTACTAGGTTT+GGG | 0.329362 | 6_1:-31341249 | Msa0882310:CDS |
| GATGGAAGGATGGCTGTTAT+AGG | 0.329614 | 6_1:-31340868 | Msa0882310:CDS |
| ATAAGTATCCAGTTAATTTC+TGG | 0.335195 | 6_1:+31342305 | None:intergenic |
| TGATATATGATACAATATTA+TGG | 0.335543 | 6_1:-31340223 | Msa0882310:three_prime_UTR |
| TATACATCCCAGAAATTAAC+TGG | 0.342006 | 6_1:-31342313 | Msa0882310:CDS |
| ACAACAAAGTTTCATTGAAA+TGG | 0.345551 | 6_1:-31341263 | Msa0882310:CDS |
| ATCAACTCCAAGCTTGATTT+CGG | 0.358230 | 6_1:-31340830 | Msa0882310:CDS |
| AGAAATTAACTGGATACTTA+TGG | 0.362899 | 6_1:-31342303 | Msa0882310:CDS |
| GCTACCTTGGCCGCTATTGT+TGG | 0.373549 | 6_1:-31342446 | Msa0882310:CDS |
| CTCATCGGCAGCTTGTTGAT+TGG | 0.374737 | 6_1:+31344177 | None:intergenic |
| CGTTTCTGCGAAAGAATTGC+AGG | 0.376232 | 6_1:-31340522 | Msa0882310:CDS |
| CTCGACGCCTTCTTACTTGC+GGG | 0.386663 | 6_1:+31340716 | None:intergenic |
| TCATCTCATACAAAGTATAA+TGG | 0.387176 | 6_1:-31340950 | Msa0882310:CDS |
| CATGATGAAGAAACTATCTT+TGG | 0.391665 | 6_1:-31344446 | Msa0882310:CDS |
| GAAGCCATGTTTGCAGATCT+TGG | 0.393510 | 6_1:-31342819 | Msa0882310:CDS |
| TCATCGGCAGCTTGTTGATT+GGG | 0.394227 | 6_1:+31344178 | None:intergenic |
| CTTCTTGTTGTCGTACTGTT+TGG | 0.394514 | 6_1:-31344058 | Msa0882310:CDS |
| ACGGAAACAAAATTCAATAA+TGG | 0.397484 | 6_1:-31343375 | Msa0882310:intron |
| TTGCACCAATTGTAATCATC+TGG | 0.398378 | 6_1:-31343181 | Msa0882310:CDS |
| AAAAGGAATATTGTAGCAAT+CGG | 0.405929 | 6_1:+31341438 | None:intergenic |
| TTGACTCTTGCTGTAACCAT+TGG | 0.407207 | 6_1:-31342278 | Msa0882310:CDS |
| TGATCCAATCCAGGGTTGTT+AGG | 0.412649 | 6_1:+31340679 | None:intergenic |
| TAAGTATCCAGTTAATTTCT+GGG | 0.413836 | 6_1:+31342306 | None:intergenic |
| CTACCTTGGCCGCTATTGTT+GGG | 0.413857 | 6_1:-31342445 | Msa0882310:CDS |
| CAATGACCATCATTCAAGTA+TGG | 0.415193 | 6_1:+31340283 | None:intergenic |
| GGTCTTTGTTTGCGTAAAAT+CGG | 0.416825 | 6_1:-31341106 | Msa0882310:CDS |
| TTTGGTGCTTGCATGGTCAT+AGG | 0.421597 | 6_1:-31344040 | Msa0882310:CDS |
| CACATCAGTCTTATCGAAGT+TGG | 0.424667 | 6_1:-31340472 | Msa0882310:CDS |
| CTGTTAGCATATCAAAGCTT+CGG | 0.428880 | 6_1:-31344545 | Msa0882310:CDS |
| AAGTTGATTGCAAGCGGCGC+AGG | 0.430238 | 6_1:+31340752 | None:intergenic |
| CTAGGAATTGTCCGTGTCCC+AGG | 0.433982 | 6_1:-31341219 | Msa0882310:CDS |
| CCAATCAGAAAACGTTCTTC+AGG | 0.435007 | 6_1:+31341063 | None:intergenic |
| GTTTATAAAAGTACATTTGA+AGG | 0.435121 | 6_1:-31344485 | Msa0882310:CDS |
| CTTCATCAAGACTAGTACTC+AGG | 0.438904 | 6_1:-31343066 | Msa0882310:CDS |
| CGCAATGTTGGAGAGCAAAT+AGG | 0.439763 | 6_1:+31343228 | None:intergenic |
| ATCTACTCGGAACTTGCAAC+TGG | 0.441741 | 6_1:-31341186 | Msa0882310:CDS |
| AAGTAAGAAGGCGTCGAGTA+AGG | 0.442966 | 6_1:-31340711 | Msa0882310:CDS |
| CAACTCCAGCCTCCTTGGCT+TGG | 0.448016 | 6_1:+31340626 | None:intergenic |
| GTTTCATTGAAATGGTTACT+AGG | 0.450379 | 6_1:-31341255 | Msa0882310:CDS |
| CCTGCTAGCATGTCTCATAC+TGG | 0.452739 | 6_1:-31343255 | Msa0882310:CDS |
| TGCTCGGCCGAAATCAAGCT+TGG | 0.452895 | 6_1:+31340823 | None:intergenic |
| ATTGTCCGTGTCCCAGGGAT+TGG | 0.453671 | 6_1:-31341213 | Msa0882310:CDS |
| GCGGTTCCACTGCCTCCATC+TGG | 0.454956 | 6_1:+31340920 | None:intergenic |
| GTTATGTATGTGTGGCATTA+CGG | 0.456184 | 6_1:-31341315 | Msa0882310:CDS |
| CGACAATCCAAAAGAACAAA+AGG | 0.456707 | 6_1:+31341421 | None:intergenic |
| GCTGGAGTTGCGTATATAAT+GGG | 0.459552 | 6_1:-31340613 | Msa0882310:CDS |
| ATGGTTCTCTGCAGTTGTCA+TGG | 0.466926 | 6_1:-31344589 | Msa0882310:intron |
| CAAAGATAGTTTCTTCATCA+TGG | 0.471376 | 6_1:+31344447 | None:intergenic |
| GGGTTATAGATCTGCTACTA+GGG | 0.472351 | 6_1:+31340773 | None:intergenic |
| CACTAGTCATAATCTTTGTC+TGG | 0.474410 | 6_1:-31341473 | Msa0882310:CDS |
| GAGGCTCCAGTCTGCGATGA+AGG | 0.475101 | 6_1:+31344130 | None:intergenic |
| ATGAAAACCCGCAAGTAAGA+AGG | 0.476574 | 6_1:-31340723 | Msa0882310:CDS |
| ATCTTCTCGAAATCCTTCTC+AGG | 0.477411 | 6_1:-31345881 | Msa0882310:intron |
| CTAGGTTTGGGCCCTAGTCT+AGG | 0.478706 | 6_1:-31341237 | Msa0882310:CDS |
| ATACGCAACTCCAGCCTCCT+TGG | 0.478895 | 6_1:+31340621 | None:intergenic |
| CTCTGTGTGTTCCGCAATGT+TGG | 0.480499 | 6_1:+31343216 | None:intergenic |
| TTAACAGCATGATCCAATCC+AGG | 0.482648 | 6_1:+31340670 | None:intergenic |
| TCCTGCATTTCACAAGGTGT+TGG | 0.483278 | 6_1:-31341127 | Msa0882310:CDS |
| TTAATCCAAGCCAAGGAGGC+TGG | 0.483772 | 6_1:-31340631 | Msa0882310:CDS |
| AAGATCTGCAAACATGGCTT+CGG | 0.484207 | 6_1:+31342821 | None:intergenic |
| ATGCACCTATACATTCGATA+TGG | 0.486036 | 6_1:+31341024 | None:intergenic |
| CACGACCATATCGAATGTAT+AGG | 0.487235 | 6_1:-31341029 | Msa0882310:CDS |
| TATAGGTGCATTGTTAGATA+CGG | 0.488450 | 6_1:-31341012 | Msa0882310:CDS |
| TAAAAGTGCACCAGGGAGGA+TGG | 0.489671 | 6_1:-31341371 | Msa0882310:CDS |
| CGTTCTTCAGGTGAGACATA+TGG | 0.492867 | 6_1:+31341075 | None:intergenic |
| TTCTTCATTTGATGGAAGGA+TGG | 0.493112 | 6_1:-31340878 | Msa0882310:CDS |
| AGAAGCCAGATGATTACAAT+TGG | 0.494086 | 6_1:+31343176 | None:intergenic |
| ACTGCCTAACAACCCTGGAT+TGG | 0.494344 | 6_1:-31340683 | Msa0882310:CDS |
| AGGGTTATAGATCTGCTACT+AGG | 0.501190 | 6_1:+31340772 | None:intergenic |
| CTATTGAGCGCCGATGATAA+CGG | 0.504444 | 6_1:-31344362 | Msa0882310:CDS |
| AAGCTTCTTCATTTGATGGA+AGG | 0.505745 | 6_1:-31340882 | Msa0882310:CDS |
| AAGGACATTAAAAGGGATGA+TGG | 0.507864 | 6_1:-31340985 | Msa0882310:CDS |
| GTGTTTGGTAATGCAATACA+TGG | 0.510091 | 6_1:-31342667 | Msa0882310:CDS |
| GGTATCAGGATTAAAAGTTA+CGG | 0.511408 | 6_1:-31343394 | Msa0882310:CDS |
| CTGTCCAAATATGTGTTTCG+AGG | 0.511421 | 6_1:+31342337 | None:intergenic |
| GATATATTATGTCTAGATTG+TGG | 0.513129 | 6_1:-31340446 | Msa0882310:exon |
| TACGGTCCTTCATCGCAGAC+TGG | 0.516475 | 6_1:-31344136 | Msa0882310:CDS |
| ATCAAGCAGTGTCATGCACT+TGG | 0.517666 | 6_1:-31342389 | Msa0882310:CDS |
| ATTTCGAGAAGATGAAGCTA+TGG | 0.518729 | 6_1:+31345891 | None:intergenic |
| ACCAACACCTTGTGAAATGC+AGG | 0.521396 | 6_1:+31341126 | None:intergenic |
| CGTACTGTTTGGTGCTTGCA+TGG | 0.524544 | 6_1:-31344047 | Msa0882310:CDS |
| TGTCATGGATTAACTTGTCT+AGG | 0.526123 | 6_1:-31344574 | Msa0882310:CDS |
| GGCGTTCCTAAAAGTGCACC+AGG | 0.530505 | 6_1:-31341379 | Msa0882310:CDS |
| AAAGGAATATTGTAGCAATC+GGG | 0.530724 | 6_1:+31341439 | None:intergenic |
| CGGGTACAAGGACATTAAAA+GGG | 0.532081 | 6_1:-31340992 | Msa0882310:CDS |
| GATATCAACATCTTCTTGCT+CGG | 0.532591 | 6_1:+31340807 | None:intergenic |
| TTTAGATTTAATCCAAGCCA+AGG | 0.535244 | 6_1:-31340638 | Msa0882310:CDS |
| CATTGTTAGATACGGGTACA+AGG | 0.540496 | 6_1:-31341004 | Msa0882310:CDS |
| ACTCAGGGTTGGATTTCTCT+CGG | 0.541690 | 6_1:-31343050 | Msa0882310:CDS |
| GAGCTGTCGTCGTACAAATA+CGG | 0.542689 | 6_1:-31344154 | Msa0882310:CDS |
| GTTTATCCAGATGGAGGCAG+TGG | 0.542753 | 6_1:-31340926 | Msa0882310:CDS |
| CTAGCATGTCTCATACTGGT+TGG | 0.543181 | 6_1:-31343251 | Msa0882310:CDS |
| ACTCCCAACAATAGCGGCCA+AGG | 0.543271 | 6_1:+31342442 | None:intergenic |
| TTACCCTACAGTTCTGGCAT+CGG | 0.546800 | 6_1:-31343415 | Msa0882310:intron |
| ACTACCTTACCTGAAATAGC+TGG | 0.548887 | 6_1:+31344001 | None:intergenic |
| TGCATGACACTGCTTGATGA+TGG | 0.549256 | 6_1:+31342394 | None:intergenic |
| ACACGGACAATTCCTAGACT+AGG | 0.553888 | 6_1:+31341225 | None:intergenic |
| TCAAGACTAGTACTCAGGGT+TGG | 0.554454 | 6_1:-31343061 | Msa0882310:CDS |
| TCTTGATTGTTATGTATGTG+TGG | 0.554494 | 6_1:-31341323 | Msa0882310:CDS |
| GTTCATAACCACATTTCTGA+TGG | 0.556704 | 6_1:-31341496 | Msa0882310:CDS |
| CATAACAATCAAGAAGAAGA+AGG | 0.558991 | 6_1:+31341332 | None:intergenic |
| ATGACCAAGATCTGCAAACA+TGG | 0.559044 | 6_1:+31342815 | None:intergenic |
| CAAGAGGAACCCATCCTCCC+TGG | 0.559228 | 6_1:+31341361 | None:intergenic |
| TATAATGGAGTTTATCCAGA+TGG | 0.560256 | 6_1:-31340935 | Msa0882310:CDS |
| GGAATGTTGAGAGCCACAGC+TGG | 0.564106 | 6_1:+31340496 | None:intergenic |
| AAAAGTGCACCAGGGAGGAT+GGG | 0.564191 | 6_1:-31341370 | Msa0882310:CDS |
| CGTCAAAAGTTGATTGCAAG+CGG | 0.565019 | 6_1:+31340746 | None:intergenic |
| AATACCTTCACCGTTATCAT+CGG | 0.565220 | 6_1:+31344352 | None:intergenic |
| AGGAAGGTTTGTTACGAAGT+GGG | 0.566294 | 6_1:+31341146 | None:intergenic |
| ACTCGACGCCTTCTTACTTG+CGG | 0.568178 | 6_1:+31340715 | None:intergenic |
| CAGGAAGGTTTGTTACGAAG+TGG | 0.569332 | 6_1:+31341145 | None:intergenic |
| TTTCAACTGCCTAACAACCC+TGG | 0.571708 | 6_1:-31340688 | Msa0882310:CDS |
| CCAGTATGAGACATGCTAGC+AGG | 0.572488 | 6_1:+31343255 | None:intergenic |
| GGATCTATAATACGATACAC+TGG | 0.573433 | 6_1:-31343136 | Msa0882310:CDS |
| AGAACTTGATGATATAATGT+GGG | 0.574528 | 6_1:+31343087 | None:intergenic |
| CAATGATAAAATCAAGAATG+AGG | 0.575181 | 6_1:+31340352 | None:intergenic |
| AGGGTTGGATTTCTCTCGGA+GGG | 0.577288 | 6_1:-31343046 | Msa0882310:CDS |
| GGTTATGTCCTGAAATCCAA+TGG | 0.581083 | 6_1:+31342262 | None:intergenic |
| GTACGACGACAGCTCCTCAT+CGG | 0.584229 | 6_1:+31344162 | None:intergenic |
| AAGAAGAAGGACAAGACAAG+AGG | 0.585159 | 6_1:+31341345 | None:intergenic |
| TCAGGTGAGACATATGGTAC+AGG | 0.585971 | 6_1:+31341081 | None:intergenic |
| TTCATCAAGACTAGTACTCA+GGG | 0.586587 | 6_1:-31343065 | Msa0882310:CDS |
| CACGGACAATTCCTAGACTA+GGG | 0.586686 | 6_1:+31341226 | None:intergenic |
| GGTGTGTACGACTTTGACGC+GGG | 0.588179 | 6_1:+31342358 | None:intergenic |
| GGGATACTTCTCTGCATCAC+CGG | 0.588408 | 6_1:-31343026 | Msa0882310:intron |
| GCTTGCATGGTCATAGGTGA+TGG | 0.589102 | 6_1:-31344034 | Msa0882310:CDS |
| ATAGGTGCATTGTTAGATAC+GGG | 0.589766 | 6_1:-31341011 | Msa0882310:CDS |
| TAGGAATTGTCCGTGTCCCA+GGG | 0.591674 | 6_1:-31341218 | Msa0882310:CDS |
| AAGAACTTGATGATATAATG+TGG | 0.595238 | 6_1:+31343086 | None:intergenic |
| CGGGTATATAACAAAAGCAA+AGG | 0.595997 | 6_1:+31342689 | None:intergenic |
| AGTTGATTGCAAGCGGCGCA+GGG | 0.596111 | 6_1:+31340753 | None:intergenic |
| GATATGGTCGTGGACAAGCT+CGG | 0.598042 | 6_1:+31341040 | None:intergenic |
| CAATCAACAAGCTGCCGATG+AGG | 0.599619 | 6_1:-31344176 | Msa0882310:CDS |
| AGGGTCGGTTGTACCTGAGA+AGG | 0.600575 | 6_1:+31345868 | None:intergenic |
| AGTAGATGAGTCCAATCCCT+GGG | 0.601618 | 6_1:+31341202 | None:intergenic |
| ATGTATTGCATTACCAAACA+CGG | 0.601781 | 6_1:+31342669 | None:intergenic |
| GACACTCGTATGTGAAGGCA+AGG | 0.602824 | 6_1:-31340591 | Msa0882310:CDS |
| AAACGTCTTCAGCGGAGACG+AGG | 0.602875 | 6_1:+31344111 | None:intergenic |
| GAGTAGATGAGTCCAATCCC+TGG | 0.603429 | 6_1:+31341201 | None:intergenic |
| ATGAATACATATTTAAGCAA+CGG | 0.604438 | 6_1:+31344386 | None:intergenic |
| GTTTCTGCGAAAGAATTGCA+GGG | 0.607197 | 6_1:-31340521 | Msa0882310:CDS |
| AACTATTATGAACAGAGTCG+AGG | 0.607255 | 6_1:+31342619 | None:intergenic |
| ACGAAGTGGGTGAATATCGA+TGG | 0.607427 | 6_1:+31341159 | None:intergenic |
| CTATACATTCGATATGGTCG+TGG | 0.608299 | 6_1:+31341030 | None:intergenic |
| GCTTCAGAACTCGAGAATTG+CGG | 0.608404 | 6_1:+31340901 | None:intergenic |
| TAACAGCATGATCCAATCCA+GGG | 0.608772 | 6_1:+31340671 | None:intergenic |
| TGTGGCATTACGGTATTCGT+AGG | 0.609257 | 6_1:-31341305 | Msa0882310:CDS |
| GAATTGCAGGGGTCCAGCTG+TGG | 0.613283 | 6_1:-31340509 | Msa0882310:CDS |
| GACTAGTGCCATCAGAAATG+TGG | 0.617430 | 6_1:+31341488 | None:intergenic |
| AATGTCGATTTGTAACTACT+AGG | 0.618260 | 6_1:+31340398 | None:intergenic |
| TGCAGGACTTGCTTGTATGA+CGG | 0.622018 | 6_1:-31341523 | Msa0882310:intron |
| AGCGCCGATGATAACGGTGA+AGG | 0.624946 | 6_1:-31344356 | Msa0882310:intron |
| AATGGGACACTCGTATGTGA+AGG | 0.630197 | 6_1:-31340596 | Msa0882310:CDS |
| TGAGTCCAATCCCTGGGACA+CGG | 0.634316 | 6_1:+31341208 | None:intergenic |
| AGATAGTTTCTTCATCATGG+TGG | 0.637899 | 6_1:+31344450 | None:intergenic |
| AGGTGTGTACGACTTTGACG+CGG | 0.639117 | 6_1:+31342357 | None:intergenic |
| AAACCTTCCTGCATTTCACA+AGG | 0.643965 | 6_1:-31341133 | Msa0882310:CDS |
| AATGGAGTTTATCCAGATGG+AGG | 0.651775 | 6_1:-31340932 | Msa0882310:CDS |
| AGCTTGACTCCCAACAATAG+CGG | 0.652223 | 6_1:+31342436 | None:intergenic |
| CGAAGGCGTGTATCTATCAG+CGG | 0.653373 | 6_1:-31341400 | Msa0882310:CDS |
| TGTATTGCATTACCAAACAC+GGG | 0.653373 | 6_1:+31342670 | None:intergenic |
| AGGGATTGGACTCATCTACT+CGG | 0.657568 | 6_1:-31341199 | Msa0882310:CDS |
| CTATTTGCTCTCCAACATTG+CGG | 0.663991 | 6_1:-31343227 | Msa0882310:CDS |
| TTTCTGCGAAAGAATTGCAG+GGG | 0.665372 | 6_1:-31340520 | Msa0882310:CDS |
| ACACCTTGTGAAATGCAGGA+AGG | 0.668467 | 6_1:+31341130 | None:intergenic |
| CAGGGTTGGATTTCTCTCGG+AGG | 0.669872 | 6_1:-31343047 | Msa0882310:CDS |
| TTCCTAAAAGTGCACCAGGG+AGG | 0.703180 | 6_1:-31341375 | Msa0882310:CDS |
| TGTTTGGTAATGCAATACAT+GGG | 0.708247 | 6_1:-31342666 | Msa0882310:CDS |
| GAACTTGATGATATAATGTG+GGG | 0.708764 | 6_1:+31343088 | None:intergenic |
| AGATTTAATCCAAGCCAAGG+AGG | 0.711722 | 6_1:-31340635 | Msa0882310:CDS |
| ACTTCGATAAGACTGATGTG+AGG | 0.732857 | 6_1:+31340475 | None:intergenic |
| GTGTGTACGACTTTGACGCG+GGG | 0.733832 | 6_1:+31342359 | None:intergenic |
| GCGTTCCTAAAAGTGCACCA+GGG | 0.755406 | 6_1:-31341378 | Msa0882310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATGAATTATATGATT+TGG | - | chr6_1:31344095-31344114 | Msa0882310:CDS | 10.0% |
| !!! | AACTATAATTTAAGTTTTTT+CGG | + | chr6_1:31344417-31344436 | None:intergenic | 10.0% |
| !! | ATTTAACGAATAATAATACT+TGG | + | chr6_1:31341537-31341556 | None:intergenic | 15.0% |
| !!! | AAATGTATCGATTTTTTTTA+TGG | - | chr6_1:31341561-31341580 | Msa0882310:intron | 15.0% |
| !! | ACTTGAAACATAAATTTAAA+AGG | + | chr6_1:31341867-31341886 | None:intergenic | 15.0% |
| !!! | TTTTAAATTTATGTTTCAAG+TGG | - | chr6_1:31341866-31341885 | Msa0882310:intron | 15.0% |
| !!! | GCTTAAATTTAAAGTTATAA+GGG | + | chr6_1:31343243-31343262 | None:intergenic | 15.0% |
| !!! | AAAACAAATTGATTTCATTA+AGG | + | chr6_1:31343643-31343662 | None:intergenic | 15.0% |
| !! | AATTGCATATAAATAAGTTT+GGG | + | chr6_1:31344071-31344090 | None:intergenic | 15.0% |
| !! | TAATTGCATATAAATAAGTT+TGG | + | chr6_1:31344072-31344091 | None:intergenic | 15.0% |
| !! | TGATATATGATACAATATTA+TGG | - | chr6_1:31345946-31345965 | Msa0882310:five_prime_UTR | 15.0% |
| !! | AAAAAAACTAAACTCACATA+TGG | - | chr6_1:31340246-31340265 | Msa0882310:three_prime_UTR | 20.0% |
| !!! | TTTTGATTCAAATCTTCTAT+TGG | - | chr6_1:31340486-31340505 | Msa0882310:CDS | 20.0% |
| !!! | TTCTTTAGTGTATTTTTGAT+GGG | - | chr6_1:31340775-31340794 | Msa0882310:CDS | 20.0% |
| !!! | TTTTAAAAACTAAAATACCG+AGG | + | chr6_1:31340937-31340956 | None:intergenic | 20.0% |
| !! | AATAAAATAAACATCTGCAA+TGG | - | chr6_1:31341288-31341307 | Msa0882310:CDS | 20.0% |
| !!! | CTACTTTGAATAATTTTCTA+TGG | - | chr6_1:31341489-31341508 | Msa0882310:CDS | 20.0% |
| !!! | GTTTATAAAAGTACATTTGA+AGG | - | chr6_1:31341684-31341703 | Msa0882310:intron | 20.0% |
| !! | ATGAATACATATTTAAGCAA+CGG | + | chr6_1:31341786-31341805 | None:intergenic | 20.0% |
| !! | TCTTATCATATAAGTTCTTA+TGG | - | chr6_1:31342266-31342285 | Msa0882310:CDS | 20.0% |
| !!! | TTCTATCGATTTTTATTCTT+GGG | - | chr6_1:31343012-31343031 | Msa0882310:intron | 20.0% |
| !!! | CGCTTAAATTTAAAGTTATA+AGG | + | chr6_1:31343244-31343263 | None:intergenic | 20.0% |
| !! | CAAAACAATATGATAAACAT+TGG | + | chr6_1:31344476-31344495 | None:intergenic | 20.0% |
| !! | AGGATGTAAAATTTACAAAA+TGG | + | chr6_1:31345860-31345879 | None:intergenic | 20.0% |
| !! | TTTGAGATTGAGATAAGAAA+GGG | + | chr6_1:31340323-31340342 | None:intergenic | 25.0% |
| !!! | ATTTCATACTTTGAGATTTG+AGG | - | chr6_1:31340548-31340567 | Msa0882310:CDS | 25.0% |
| !!! | TTTCATACTTTGAGATTTGA+GGG | - | chr6_1:31340549-31340568 | Msa0882310:CDS | 25.0% |
| ! | ATGTGTGTATACTGAATTAT+TGG | + | chr6_1:31340578-31340597 | None:intergenic | 25.0% |
| ! | TATCTGTAGCAGTAAAATTT+AGG | - | chr6_1:31340597-31340616 | Msa0882310:CDS | 25.0% |
| ! | TGATAATTGATACAAGAAAG+TGG | - | chr6_1:31340661-31340680 | Msa0882310:CDS | 25.0% |
| !!! | CTTCTTTAGTGTATTTTTGA+TGG | - | chr6_1:31340774-31340793 | Msa0882310:CDS | 25.0% |
| !! | ATTTTTCGTAACCATGTTAT+TGG | + | chr6_1:31341421-31341440 | None:intergenic | 25.0% |
| !! | GTACTTTTATAAACATAGAG+CGG | + | chr6_1:31341678-31341697 | None:intergenic | 25.0% |
| ! | GAAAATAACTTACAGCTTAA+TGG | + | chr6_1:31342330-31342349 | None:intergenic | 25.0% |
| !!! | GTTATTTTCATAAGCTATCT+TGG | - | chr6_1:31342341-31342360 | Msa0882310:CDS | 25.0% |
| !! | AAACTTTTCATAAGCTATCT+TGG | - | chr6_1:31342389-31342408 | Msa0882310:CDS | 25.0% |
| ! | TAAGCTGAAAATAAACTTAC+AGG | - | chr6_1:31342425-31342444 | Msa0882310:CDS | 25.0% |
| ! | ATCTACTAAAAACTGTTGTA+TGG | + | chr6_1:31342665-31342684 | None:intergenic | 25.0% |
| ! | TGAGAATTTGAACAAGTTAA+AGG | + | chr6_1:31342705-31342724 | None:intergenic | 25.0% |
| ! | ACGGAAACAAAATTCAATAA+TGG | - | chr6_1:31342794-31342813 | Msa0882310:CDS | 25.0% |
| ! | TATCTCTAGCAAATGAAAAT+TGG | + | chr6_1:31342824-31342843 | None:intergenic | 25.0% |
| ! | GAAACAACGTGAAATTTATT+AGG | + | chr6_1:31342881-31342900 | None:intergenic | 25.0% |
| !!! | CTTCTATCGATTTTTATTCT+TGG | - | chr6_1:31343011-31343030 | Msa0882310:intron | 25.0% |
| !! | AGAACTTGATGATATAATGT+GGG | + | chr6_1:31343085-31343104 | None:intergenic | 25.0% |
| !! | AAGAACTTGATGATATAATG+TGG | + | chr6_1:31343086-31343105 | None:intergenic | 25.0% |
| !!! | AGGGTAAATTATTTCTGAAA+AGG | + | chr6_1:31343224-31343243 | None:intergenic | 25.0% |
| !! | AAATGAGTTACTAAGTTGAA+TGG | - | chr6_1:31343297-31343316 | Msa0882310:intron | 25.0% |
| ! | TAAGTATCCAGTTAATTTCT+GGG | + | chr6_1:31343866-31343885 | None:intergenic | 25.0% |
| ! | ATAAGTATCCAGTTAATTTC+TGG | + | chr6_1:31343867-31343886 | None:intergenic | 25.0% |
| ! | AGAAATTAACTGGATACTTA+TGG | - | chr6_1:31343866-31343885 | Msa0882310:intron | 25.0% |
| !!! | TTTAAGTTTTTTCGGTAAGA+GGG | + | chr6_1:31344409-31344428 | None:intergenic | 25.0% |
| !!! | ATTTAAGTTTTTTCGGTAAG+AGG | + | chr6_1:31344410-31344429 | None:intergenic | 25.0% |
| ! | TTTCAATTGAAAACATGCAT+AGG | + | chr6_1:31344598-31344617 | None:intergenic | 25.0% |
| ! | AATACTCGGAAAACTTATTA+CGG | + | chr6_1:31344622-31344641 | None:intergenic | 25.0% |
| !! | TAATAAGTTTTCCGAGTATT+TGG | - | chr6_1:31344622-31344641 | Msa0882310:intron | 25.0% |
| ! | AAAAGGAATATTGTAGCAAT+CGG | + | chr6_1:31344734-31344753 | None:intergenic | 25.0% |
| !! | CAATATTCCTTTTGTTCTTT+TGG | - | chr6_1:31344741-31344760 | Msa0882310:intron | 25.0% |
| ! | ACAACAAAGTTTCATTGAAA+TGG | - | chr6_1:31344906-31344925 | Msa0882310:intron | 25.0% |
| ! | TCATCTCATACAAAGTATAA+TGG | - | chr6_1:31345219-31345238 | Msa0882310:intron | 25.0% |
| ! | GATATATTATGTCTAGATTG+TGG | - | chr6_1:31345723-31345742 | Msa0882310:intron | 25.0% |
| !! | ATTGTGGAATTTTACCATTT+AGG | - | chr6_1:31345739-31345758 | Msa0882310:intron | 25.0% |
| !!! | TTAGAAACAAGTTTTCAAGA+TGG | - | chr6_1:31345792-31345811 | Msa0882310:intron | 25.0% |
| ! | CAATGATAAAATCAAGAATG+AGG | + | chr6_1:31345820-31345839 | None:intergenic | 25.0% |
| ! | GTTTGAGATTGAGATAAGAA+AGG | + | chr6_1:31340324-31340343 | None:intergenic | 30.0% |
| !! | TTCATACTTTGAGATTTGAG+GGG | - | chr6_1:31340550-31340569 | Msa0882310:CDS | 30.0% |
| ! | AAAGTACCTAGCTTGAAATA+TGG | + | chr6_1:31341258-31341277 | None:intergenic | 30.0% |
| TAAACATCTGCAATGGAATA+TGG | - | chr6_1:31341295-31341314 | Msa0882310:CDS | 30.0% | |
| AATACTTCACACCAATAACA+TGG | - | chr6_1:31341407-31341426 | Msa0882310:CDS | 30.0% | |
| CAAAGATAGTTTCTTCATCA+TGG | + | chr6_1:31341725-31341744 | None:intergenic | 30.0% | |
| CATGATGAAGAAACTATCTT+TGG | - | chr6_1:31341723-31341742 | Msa0882310:intron | 30.0% | |
| !!! | GTGTTTTTTCGTTGATTTTC+TGG | - | chr6_1:31341745-31341764 | Msa0882310:intron | 30.0% |
| ATCATGATGCAATTATTGTC+AGG | - | chr6_1:31341913-31341932 | Msa0882310:intron | 30.0% | |
| ATTGGGAAGCAAGTTAAATT+TGG | + | chr6_1:31341977-31341996 | None:intergenic | 30.0% | |
| AATAAGAAAATCCAGAGAGT+CGG | - | chr6_1:31342196-31342215 | Msa0882310:intron | 30.0% | |
| GAACTTAATTAAGCACTTCT+GGG | + | chr6_1:31342234-31342253 | None:intergenic | 30.0% | |
| AGAACTTAATTAAGCACTTC+TGG | + | chr6_1:31342235-31342254 | None:intergenic | 30.0% | |
| AAGCTTATGGAAACATCTAA+TGG | + | chr6_1:31342455-31342474 | None:intergenic | 30.0% | |
| AGACAGTTTATGAAAGCTTA+TGG | + | chr6_1:31342468-31342487 | None:intergenic | 30.0% | |
| GTTGTATGGAAATTTGAACA+CGG | + | chr6_1:31342651-31342670 | None:intergenic | 30.0% | |
| CTTGTTCAAATTCTCAGTTA+CGG | - | chr6_1:31342709-31342728 | Msa0882310:intron | 30.0% | |
| GGTATCAGGATTAAAAGTTA+CGG | - | chr6_1:31342775-31342794 | Msa0882310:intron | 30.0% | |
| ! | ATAAATTTCACGTTGTTTCC+AGG | - | chr6_1:31342882-31342901 | Msa0882310:intron | 30.0% |
| ! | GAGATAGCAAAGACTATTTT+TGG | + | chr6_1:31343062-31343081 | None:intergenic | 30.0% |
| ! | GAACTTGATGATATAATGTG+GGG | + | chr6_1:31343084-31343103 | None:intergenic | 30.0% |
| ! | ATTTTACTGCTTCGTCAATA+AGG | - | chr6_1:31343375-31343394 | Msa0882310:intron | 30.0% |
| ! | TTTTACTGCTTCGTCAATAA+GGG | - | chr6_1:31343376-31343395 | Msa0882310:CDS | 30.0% |
| !! | TTTTGTTATATACCCGTGTT+TGG | - | chr6_1:31343487-31343506 | Msa0882310:intron | 30.0% |
| ATGTATTGCATTACCAAACA+CGG | + | chr6_1:31343503-31343522 | None:intergenic | 30.0% | |
| !! | TGTTTGGTAATGCAATACAT+GGG | - | chr6_1:31343503-31343522 | Msa0882310:intron | 30.0% |
| ! | TTTTAGACAAAAAAGCTGCT+TGG | + | chr6_1:31343529-31343548 | None:intergenic | 30.0% |
| AAGGTAGCAATAACAAAAAC+AGG | + | chr6_1:31343711-31343730 | None:intergenic | 30.0% | |
| !!! | TGTTTTTGTTATTGCTACCT+TGG | - | chr6_1:31343710-31343729 | Msa0882310:intron | 30.0% |
| TATACATCCCAGAAATTAAC+TGG | - | chr6_1:31343856-31343875 | Msa0882310:intron | 30.0% | |
| TTTCAGGACATAACCTTAAT+TGG | - | chr6_1:31343915-31343934 | Msa0882310:intron | 30.0% | |
| ACCTTAATTGGAAATGCTTA+TGG | - | chr6_1:31343927-31343946 | Msa0882310:intron | 30.0% | |
| ACCATAAGCATTTCCAATTA+AGG | + | chr6_1:31343931-31343950 | None:intergenic | 30.0% | |
| CATATAAATAAGTTTGGGCT+AGG | + | chr6_1:31344066-31344085 | None:intergenic | 30.0% | |
| ! | AGTTACACTTTTCAGCTTAT+AGG | + | chr6_1:31344317-31344336 | None:intergenic | 30.0% |
| !!! | ATGTAATGCTTGTGCTATTT+TGG | - | chr6_1:31344445-31344464 | Msa0882310:CDS | 30.0% |
| ! | TTCTTTTCATAATCAGTAGC+AGG | + | chr6_1:31344499-31344518 | None:intergenic | 30.0% |
| AAAGGAATATTGTAGCAATC+GGG | + | chr6_1:31344733-31344752 | None:intergenic | 30.0% | |
| CATAACAATCAAGAAGAAGA+AGG | + | chr6_1:31344840-31344859 | None:intergenic | 30.0% | |
| TCTTGATTGTTATGTATGTG+TGG | - | chr6_1:31344846-31344865 | Msa0882310:intron | 30.0% | |
| GTTTCATTGAAATGGTTACT+AGG | - | chr6_1:31344914-31344933 | Msa0882310:intron | 30.0% | |
| ATTGAAATGGTTACTAGGTT+TGG | - | chr6_1:31344919-31344938 | Msa0882310:intron | 30.0% | |
| TTGAAATGGTTACTAGGTTT+GGG | - | chr6_1:31344920-31344939 | Msa0882310:intron | 30.0% | |
| TATAGGTGCATTGTTAGATA+CGG | - | chr6_1:31345157-31345176 | Msa0882310:intron | 30.0% | |
| ! | TATAATGGAGTTTATCCAGA+TGG | - | chr6_1:31345234-31345253 | Msa0882310:intron | 30.0% |
| TTTAGATTTAATCCAAGCCA+AGG | - | chr6_1:31345531-31345550 | Msa0882310:intron | 30.0% | |
| AAAAAGCTTGTGATCGATAT+GGG | - | chr6_1:31345619-31345638 | Msa0882310:intron | 30.0% | |
| CTAGGAAAATCTAACCTAAA+TGG | + | chr6_1:31345756-31345775 | None:intergenic | 30.0% | |
| !! | AATGTCGATTTGTAACTACT+AGG | + | chr6_1:31345774-31345793 | None:intergenic | 30.0% |
| TCATTCAAGTATGGTGAAAA+AGG | + | chr6_1:31345880-31345899 | None:intergenic | 30.0% | |
| ! | TTTTCACCATACTTGAATGA+TGG | - | chr6_1:31345880-31345899 | Msa0882310:intron | 30.0% |
| ATTTCGAGAAGATGAAGCTA+TGG | + | chr6_1:31340281-31340300 | None:intergenic | 35.0% | |
| AGATTGAGATAAGAAAGGGT+CGG | + | chr6_1:31340319-31340338 | None:intergenic | 35.0% | |
| TATAATATTCCGCATACACG+CGG | - | chr6_1:31340862-31340881 | Msa0882310:CDS | 35.0% | |
| ACTGTCAAATCTCAATCCAA+CGG | + | chr6_1:31340903-31340922 | None:intergenic | 35.0% | |
| TTCACATAGTCAGATATCAC+TGG | + | chr6_1:31341009-31341028 | None:intergenic | 35.0% | |
| TATCTGACTATGTGAATGCA+AGG | - | chr6_1:31341013-31341032 | Msa0882310:CDS | 35.0% | |
| TTGCGAGAAATCTGAATTTG+AGG | - | chr6_1:31341044-31341063 | Msa0882310:CDS | 35.0% | |
| TGCGAGAAATCTGAATTTGA+GGG | - | chr6_1:31341045-31341064 | Msa0882310:CDS | 35.0% | |
| CCCTAATGAAGTTTAGTCAT+CGG | + | chr6_1:31341142-31341161 | None:intergenic | 35.0% | |
| CCGATGACTAAACTTCATTA+GGG | - | chr6_1:31341139-31341158 | Msa0882310:CDS | 35.0% | |
| TCGAATTCAAATTGCGTTAG+TGG | + | chr6_1:31341344-31341363 | None:intergenic | 35.0% | |
| ACTAACGCAATTTGAATTCG+AGG | - | chr6_1:31341343-31341362 | Msa0882310:CDS | 35.0% | |
| CTAACGCAATTTGAATTCGA+GGG | - | chr6_1:31341344-31341363 | Msa0882310:CDS | 35.0% | |
| TAACGCAATTTGAATTCGAG+GGG | - | chr6_1:31341345-31341364 | Msa0882310:CDS | 35.0% | |
| AGTTTAGTTATTGGCAAAGC+CGG | - | chr6_1:31341382-31341401 | Msa0882310:CDS | 35.0% | |
| ! | TATTGGTGTGAAGTATTCAC+CGG | + | chr6_1:31341404-31341423 | None:intergenic | 35.0% |
| CATTTCAGTGTAGACTTCTT+TGG | - | chr6_1:31341445-31341464 | Msa0882310:CDS | 35.0% | |
| TAGACTTCTTTGGATTTCCA+CGG | - | chr6_1:31341455-31341474 | Msa0882310:CDS | 35.0% | |
| ! | TTTGGATTTCCACGGTTTTT+CGG | - | chr6_1:31341463-31341482 | Msa0882310:CDS | 35.0% |
| !! | TGTCATGGATTAACTTGTCT+AGG | - | chr6_1:31341595-31341614 | Msa0882310:intron | 35.0% |
| CTGTTAGCATATCAAAGCTT+CGG | - | chr6_1:31341624-31341643 | Msa0882310:intron | 35.0% | |
| AGATAGTTTCTTCATCATGG+TGG | + | chr6_1:31341722-31341741 | None:intergenic | 35.0% | |
| AATACCTTCACCGTTATCAT+CGG | + | chr6_1:31341820-31341839 | None:intergenic | 35.0% | |
| ATGATGCAATTATTGTCAGG+TGG | - | chr6_1:31341916-31341935 | Msa0882310:intron | 35.0% | |
| TCCAAGAATTGCACTTCTAA+GGG | + | chr6_1:31342541-31342560 | None:intergenic | 35.0% | |
| TTCCAAGAATTGCACTTCTA+AGG | + | chr6_1:31342542-31342561 | None:intergenic | 35.0% | |
| TTGCACCAATTGTAATCATC+TGG | - | chr6_1:31342988-31343007 | Msa0882310:intron | 35.0% | |
| AGAAGCCAGATGATTACAAT+TGG | + | chr6_1:31342996-31343015 | None:intergenic | 35.0% | |
| GGATCTATAATACGATACAC+TGG | - | chr6_1:31343033-31343052 | Msa0882310:CDS | 35.0% | |
| TTCATCAAGACTAGTACTCA+GGG | - | chr6_1:31343104-31343123 | Msa0882310:CDS | 35.0% | |
| CACGTAAGATAACTACTTGT+AGG | + | chr6_1:31343184-31343203 | None:intergenic | 35.0% | |
| CTACAAGTAGTTATCTTACG+TGG | - | chr6_1:31343182-31343201 | Msa0882310:CDS | 35.0% | |
| CGGGTATATAACAAAAGCAA+AGG | + | chr6_1:31343483-31343502 | None:intergenic | 35.0% | |
| TGTATTGCATTACCAAACAC+GGG | + | chr6_1:31343502-31343521 | None:intergenic | 35.0% | |
| !! | GTGTTTGGTAATGCAATACA+TGG | - | chr6_1:31343502-31343521 | Msa0882310:intron | 35.0% |
| AACTATTATGAACAGAGTCG+AGG | + | chr6_1:31343553-31343572 | None:intergenic | 35.0% | |
| ! | AGTTTTTACGACTCAATACC+TGG | - | chr6_1:31343569-31343588 | Msa0882310:intron | 35.0% |
| ACAAAAACAGGCCAAAATAC+AGG | + | chr6_1:31343699-31343718 | None:intergenic | 35.0% | |
| ! | AGCGTTGAAACCAAAACTAT+AGG | - | chr6_1:31343984-31344003 | Msa0882310:intron | 35.0% |
| GCGTTGAAACCAAAACTATA+GGG | - | chr6_1:31343985-31344004 | Msa0882310:intron | 35.0% | |
| ! | ATGCAATCTCCCTATAGTTT+TGG | + | chr6_1:31343997-31344016 | None:intergenic | 35.0% |
| TATGCAAAGTTCAACTCGTT+TGG | + | chr6_1:31344156-31344175 | None:intergenic | 35.0% | |
| ! | GAGCTCAAGTTTGACTTATT+TGG | - | chr6_1:31344202-31344221 | Msa0882310:CDS | 35.0% |
| !! | AAACTGCTTTCAAGTTGGTT+CGG | - | chr6_1:31344267-31344286 | Msa0882310:intron | 35.0% |
| ! | ACTTTTCAGCTTATAGGTTG+GGG | + | chr6_1:31344311-31344330 | None:intergenic | 35.0% |
| ! | CACTTTTCAGCTTATAGGTT+GGG | + | chr6_1:31344312-31344331 | None:intergenic | 35.0% |
| ! | ACACTTTTCAGCTTATAGGT+TGG | + | chr6_1:31344313-31344332 | None:intergenic | 35.0% |
| TGCATAGGCAAAATACAGAT+TGG | + | chr6_1:31344583-31344602 | None:intergenic | 35.0% | |
| GTTCATAACCACATTTCTGA+TGG | - | chr6_1:31344673-31344692 | Msa0882310:intron | 35.0% | |
| CACTAGTCATAATCTTTGTC+TGG | - | chr6_1:31344696-31344715 | Msa0882310:intron | 35.0% | |
| CGACAATCCAAAAGAACAAA+AGG | + | chr6_1:31344751-31344770 | None:intergenic | 35.0% | |
| ! | TTGTTCTTTTGGATTGTCGA+AGG | - | chr6_1:31344752-31344771 | Msa0882310:intron | 35.0% |
| GTTATGTATGTGTGGCATTA+CGG | - | chr6_1:31344854-31344873 | Msa0882310:intron | 35.0% | |
| ! | GGTCTTTGTTTGCGTAAAAT+CGG | - | chr6_1:31345063-31345082 | Msa0882310:intron | 35.0% |
| ATGCACCTATACATTCGATA+TGG | + | chr6_1:31345148-31345167 | None:intergenic | 35.0% | |
| ATAGGTGCATTGTTAGATAC+GGG | - | chr6_1:31345158-31345177 | Msa0882310:intron | 35.0% | |
| AAGGACATTAAAAGGGATGA+TGG | - | chr6_1:31345184-31345203 | Msa0882310:intron | 35.0% | |
| ! | TCTGAAGCTTCTTCATTTGA+TGG | - | chr6_1:31345283-31345302 | Msa0882310:intron | 35.0% |
| AAGCTTCTTCATTTGATGGA+AGG | - | chr6_1:31345287-31345306 | Msa0882310:intron | 35.0% | |
| TTCTTCATTTGATGGAAGGA+TGG | - | chr6_1:31345291-31345310 | Msa0882310:intron | 35.0% | |
| ATCAACTCCAAGCTTGATTT+CGG | - | chr6_1:31345339-31345358 | Msa0882310:intron | 35.0% | |
| GATATCAACATCTTCTTGCT+CGG | + | chr6_1:31345365-31345384 | None:intergenic | 35.0% | |
| GAAAAAGCTTGTGATCGATA+TGG | - | chr6_1:31345618-31345637 | Msa0882310:intron | 35.0% | |
| ! | GATTTTATCATTGCTTCTGC+TGG | - | chr6_1:31345827-31345846 | Msa0882310:intron | 35.0% |
| CAATGACCATCATTCAAGTA+TGG | + | chr6_1:31345889-31345908 | None:intergenic | 35.0% | |
| GAAGATGAAGCTATGGATTC+TGG | + | chr6_1:31340274-31340293 | None:intergenic | 40.0% | |
| ATCTTCTCGAAATCCTTCTC+AGG | - | chr6_1:31340288-31340307 | Msa0882310:three_prime_UTR | 40.0% | |
| CTTCACTTCAACACTGTCTT+TGG | - | chr6_1:31340413-31340432 | Msa0882310:three_prime_UTR | 40.0% | |
| !! | TTTGATGGGTTTGAGCTTTG+TGG | - | chr6_1:31340789-31340808 | Msa0882310:CDS | 40.0% |
| CTTTGTGGATGGAAAAACTG+TGG | - | chr6_1:31340804-31340823 | Msa0882310:CDS | 40.0% | |
| TGGATGGAAAAACTGTGGTT+GGG | - | chr6_1:31340809-31340828 | Msa0882310:CDS | 40.0% | |
| GACAGTCATGATTTCAACCT+CGG | - | chr6_1:31340917-31340936 | Msa0882310:CDS | 40.0% | |
| ACTGGTCGTTGTATTGAGAT+CGG | + | chr6_1:31340991-31341010 | None:intergenic | 40.0% | |
| GCGAGAAATCTGAATTTGAG+GGG | - | chr6_1:31341046-31341065 | Msa0882310:CDS | 40.0% | |
| CTAATCTCCGATGAGGAATT+TGG | + | chr6_1:31341094-31341113 | None:intergenic | 40.0% | |
| ACAATGACTAATCTCCGATG+AGG | + | chr6_1:31341101-31341120 | None:intergenic | 40.0% | |
| AGTTTAGTCATCGGCAAAGT+TGG | + | chr6_1:31341133-31341152 | None:intergenic | 40.0% | |
| GCCGATGACTAAACTTCATT+AGG | - | chr6_1:31341138-31341157 | Msa0882310:CDS | 40.0% | |
| TGAAGGCAAACCCAATTCAA+GGG | + | chr6_1:31341171-31341190 | None:intergenic | 40.0% | |
| AACGGTCCATATTTCAAGCT+AGG | - | chr6_1:31341249-31341268 | Msa0882310:CDS | 40.0% | |
| CCAATAACTAAACTCCGTCA+CGG | + | chr6_1:31341376-31341395 | None:intergenic | 40.0% | |
| AAGTAGAAACCGAAAAACCG+TGG | + | chr6_1:31341475-31341494 | None:intergenic | 40.0% | |
| !! | CAAAGCTTCGGTGTTGTATA+TGG | - | chr6_1:31341636-31341655 | Msa0882310:intron | 40.0% |
| TTCTCCAAAAACGTCTTCAG+CGG | + | chr6_1:31342069-31342088 | None:intergenic | 40.0% | |
| !! | CGTTTTTGGAGAAGCACAAA+CGG | - | chr6_1:31342076-31342095 | Msa0882310:intron | 40.0% |
| ! | CTTCTTGTTGTCGTACTGTT+TGG | - | chr6_1:31342111-31342130 | Msa0882310:intron | 40.0% |
| ! | GTACTTTCTCCAGCTATTTC+AGG | - | chr6_1:31342159-31342178 | Msa0882310:intron | 40.0% |
| ! | TTCTCCAGCTATTTCAGGTA+AGG | - | chr6_1:31342164-31342183 | Msa0882310:intron | 40.0% |
| ACTACCTTACCTGAAATAGC+TGG | + | chr6_1:31342171-31342190 | None:intergenic | 40.0% | |
| !! | AAAATCCAGAGAGTCGGTTT+TGG | - | chr6_1:31342202-31342221 | Msa0882310:intron | 40.0% |
| ! | TTATACCAAAACCGACTCTC+TGG | + | chr6_1:31342210-31342229 | None:intergenic | 40.0% |
| !! | TGTCTCAGAAGTGCTTATGT+TGG | - | chr6_1:31342483-31342502 | Msa0882310:intron | 40.0% |
| TTCTTCTTACCCTACAGTTC+TGG | - | chr6_1:31342748-31342767 | Msa0882310:intron | 40.0% | |
| CTATTTGCTCTCCAACATTG+CGG | - | chr6_1:31342942-31342961 | Msa0882310:intron | 40.0% | |
| CTTCATCAAGACTAGTACTC+AGG | - | chr6_1:31343103-31343122 | Msa0882310:CDS | 40.0% | |
| AAGATCTGCAAACATGGCTT+CGG | + | chr6_1:31343351-31343370 | None:intergenic | 40.0% | |
| ATGACCAAGATCTGCAAACA+TGG | + | chr6_1:31343357-31343376 | None:intergenic | 40.0% | |
| GAAAGTCGGAATTACTAACC+AGG | + | chr6_1:31343590-31343609 | None:intergenic | 40.0% | |
| ! | AATGTTTTGCCTTGTGTTGC+AGG | - | chr6_1:31343672-31343691 | Msa0882310:intron | 40.0% |
| CACACCTCGAAACACATATT+TGG | - | chr6_1:31343828-31343847 | Msa0882310:intron | 40.0% | |
| CTGTCCAAATATGTGTTTCG+AGG | + | chr6_1:31343835-31343854 | None:intergenic | 40.0% | |
| ! | TTGACTCTTGCTGTAACCAT+TGG | - | chr6_1:31343891-31343910 | Msa0882310:intron | 40.0% |
| TGCTGTAACCATTGGATTTC+AGG | - | chr6_1:31343899-31343918 | Msa0882310:intron | 40.0% | |
| GGTTATGTCCTGAAATCCAA+TGG | + | chr6_1:31343910-31343929 | None:intergenic | 40.0% | |
| CGGTAATTAACCGTTACACT+AGG | + | chr6_1:31344236-31344255 | None:intergenic | 40.0% | |
| AAGCAGTTTGAGTCTCGATT+CGG | + | chr6_1:31344256-31344275 | None:intergenic | 40.0% | |
| ! | GACTCAAACTGCTTTCAAGT+TGG | - | chr6_1:31344262-31344281 | Msa0882310:intron | 40.0% |
| !! | CTTTTCAGCTTATAGGTTGG+GGG | + | chr6_1:31344310-31344329 | None:intergenic | 40.0% |
| GTGAAACGTTTCCATCAAGA+GGG | + | chr6_1:31344349-31344368 | None:intergenic | 40.0% | |
| AGTGAAACGTTTCCATCAAG+AGG | + | chr6_1:31344350-31344369 | None:intergenic | 40.0% | |
| ! | TTTTCCGAGTATTTGGTTGC+AGG | - | chr6_1:31344629-31344648 | Msa0882310:intron | 40.0% |
| AAGTCCTGCAACCAAATACT+CGG | + | chr6_1:31344636-31344655 | None:intergenic | 40.0% | |
| AAGAAGAAGGACAAGACAAG+AGG | + | chr6_1:31344827-31344846 | None:intergenic | 40.0% | |
| !! | AGGAAGGTTTGTTACGAAGT+GGG | + | chr6_1:31345026-31345045 | None:intergenic | 40.0% |
| AAACCTTCCTGCATTTCACA+AGG | - | chr6_1:31345036-31345055 | Msa0882310:intron | 40.0% | |
| CCAATCAGAAAACGTTCTTC+AGG | + | chr6_1:31345109-31345128 | None:intergenic | 40.0% | |
| ! | CCTGAAGAACGTTTTCTGAT+TGG | - | chr6_1:31345106-31345125 | Msa0882310:intron | 40.0% |
| CTATACATTCGATATGGTCG+TGG | + | chr6_1:31345142-31345161 | None:intergenic | 40.0% | |
| CACGACCATATCGAATGTAT+AGG | - | chr6_1:31345140-31345159 | Msa0882310:intron | 40.0% | |
| CATTGTTAGATACGGGTACA+AGG | - | chr6_1:31345165-31345184 | Msa0882310:intron | 40.0% | |
| ACGGGTACAAGGACATTAAA+AGG | - | chr6_1:31345176-31345195 | Msa0882310:intron | 40.0% | |
| CGGGTACAAGGACATTAAAA+GGG | - | chr6_1:31345177-31345196 | Msa0882310:intron | 40.0% | |
| AATGGAGTTTATCCAGATGG+AGG | - | chr6_1:31345237-31345256 | Msa0882310:intron | 40.0% | |
| GGGTTATAGATCTGCTACTA+GGG | + | chr6_1:31345399-31345418 | None:intergenic | 40.0% | |
| AGGGTTATAGATCTGCTACT+AGG | + | chr6_1:31345400-31345419 | None:intergenic | 40.0% | |
| ! | CGTCAAAAGTTGATTGCAAG+CGG | + | chr6_1:31345426-31345445 | None:intergenic | 40.0% |
| ATGAAAACCCGCAAGTAAGA+AGG | - | chr6_1:31345446-31345465 | Msa0882310:intron | 40.0% | |
| TAACAGCATGATCCAATCCA+GGG | + | chr6_1:31345501-31345520 | None:intergenic | 40.0% | |
| TTAACAGCATGATCCAATCC+AGG | + | chr6_1:31345502-31345521 | None:intergenic | 40.0% | |
| AGATTTAATCCAAGCCAAGG+AGG | - | chr6_1:31345534-31345553 | Msa0882310:intron | 40.0% | |
| GCTGGAGTTGCGTATATAAT+GGG | - | chr6_1:31345556-31345575 | Msa0882310:intron | 40.0% | |
| GTTTCTGCGAAAGAATTGCA+GGG | - | chr6_1:31345648-31345667 | Msa0882310:intron | 40.0% | |
| TTTCTGCGAAAGAATTGCAG+GGG | - | chr6_1:31345649-31345668 | Msa0882310:intron | 40.0% | |
| ACTTCGATAAGACTGATGTG+AGG | + | chr6_1:31345697-31345716 | None:intergenic | 40.0% | |
| ! | CACATCAGTCTTATCGAAGT+TGG | - | chr6_1:31345697-31345716 | Msa0882310:intron | 40.0% |
| ! | ATGGGTTTGAGCTTTGTGGA+TGG | - | chr6_1:31340793-31340812 | Msa0882310:CDS | 45.0% |
| GTGGATGGAAAAACTGTGGT+TGG | - | chr6_1:31340808-31340827 | Msa0882310:CDS | 45.0% | |
| TGGAAAAACTGTGGTTGGGA+AGG | - | chr6_1:31340813-31340832 | Msa0882310:CDS | 45.0% | |
| GGAAAAACTGTGGTTGGGAA+GGG | - | chr6_1:31340814-31340833 | Msa0882310:CDS | 45.0% | |
| GTCGTTGTATTGAGATCGGA+TGG | + | chr6_1:31340987-31341006 | None:intergenic | 45.0% | |
| TGGCCAACCAAATTCCTCAT+CGG | - | chr6_1:31341084-31341103 | Msa0882310:CDS | 45.0% | |
| TCTCCGATGAGGAATTTGGT+TGG | + | chr6_1:31341090-31341109 | None:intergenic | 45.0% | |
| GAAGGCAAACCCAATTCAAG+GGG | + | chr6_1:31341170-31341189 | None:intergenic | 45.0% | |
| CTGAAGGCAAACCCAATTCA+AGG | + | chr6_1:31341172-31341191 | None:intergenic | 45.0% | |
| GAATTGGGTTTGCCTTCAGT+CGG | - | chr6_1:31341173-31341192 | Msa0882310:CDS | 45.0% | |
| ! | TGCTGGAAATTACCGACTGA+AGG | + | chr6_1:31341188-31341207 | None:intergenic | 45.0% |
| GTCGTTGGATCAAGATCGAA+CGG | - | chr6_1:31341231-31341250 | Msa0882310:CDS | 45.0% | |
| ! | CCGTGACGGAGTTTAGTTAT+TGG | - | chr6_1:31341373-31341392 | Msa0882310:CDS | 45.0% |
| ATGGTTCTCTGCAGTTGTCA+TGG | - | chr6_1:31341580-31341599 | Msa0882310:intron | 45.0% | |
| !! | CTATTGAGCGCCGATGATAA+CGG | - | chr6_1:31341807-31341826 | Msa0882310:intron | 45.0% |
| ! | CTCTTTATTCGCTGCTTTGC+AGG | - | chr6_1:31341947-31341966 | Msa0882310:intron | 45.0% |
| !! | TCATCGGCAGCTTGTTGATT+GGG | + | chr6_1:31341994-31342013 | None:intergenic | 45.0% |
| GAGCTGTCGTCGTACAAATA+CGG | - | chr6_1:31342015-31342034 | Msa0882310:intron | 45.0% | |
| !! | TTTGGTGCTTGCATGGTCAT+AGG | - | chr6_1:31342129-31342148 | Msa0882310:intron | 45.0% |
| ! | TGCACTTCTAAGGGCTTGTT+TGG | + | chr6_1:31342532-31342551 | None:intergenic | 45.0% |
| ! | GCCCTTAGAAGTGCAATTCT+TGG | - | chr6_1:31342537-31342556 | Msa0882310:intron | 45.0% |
| ! | TTACCCTACAGTTCTGGCAT+CGG | - | chr6_1:31342754-31342773 | Msa0882310:intron | 45.0% |
| ATACCGATGCCAGAACTGTA+GGG | + | chr6_1:31342760-31342779 | None:intergenic | 45.0% | |
| CTAGCATGTCTCATACTGGT+TGG | - | chr6_1:31342918-31342937 | Msa0882310:intron | 45.0% | |
| CGCAATGTTGGAGAGCAAAT+AGG | + | chr6_1:31342944-31342963 | None:intergenic | 45.0% | |
| TCAAGACTAGTACTCAGGGT+TGG | - | chr6_1:31343108-31343127 | Msa0882310:CDS | 45.0% | |
| ACTCAGGGTTGGATTTCTCT+CGG | - | chr6_1:31343119-31343138 | Msa0882310:CDS | 45.0% | |
| ! | ATCACCGGTACGTTAGTTCT+TGG | - | chr6_1:31343158-31343177 | Msa0882310:CDS | 45.0% |
| TAGGCCAAGAACTAACGTAC+CGG | + | chr6_1:31343165-31343184 | None:intergenic | 45.0% | |
| !!! | TGTCATTTTTGCGTCTCACC+AGG | - | chr6_1:31343323-31343342 | Msa0882310:intron | 45.0% |
| GAAGCCATGTTTGCAGATCT+TGG | - | chr6_1:31343350-31343369 | Msa0882310:intron | 45.0% | |
| TCGTGAACACGTCAGAAAGT+CGG | + | chr6_1:31343604-31343623 | None:intergenic | 45.0% | |
| AATACAGGTCCTGCAACACA+AGG | + | chr6_1:31343684-31343703 | None:intergenic | 45.0% | |
| ! | GTGTTGCAGGACCTGTATTT+TGG | - | chr6_1:31343685-31343704 | Msa0882310:intron | 45.0% |
| AGCTTGACTCCCAACAATAG+CGG | + | chr6_1:31343736-31343755 | None:intergenic | 45.0% | |
| TGCATGACACTGCTTGATGA+TGG | + | chr6_1:31343778-31343797 | None:intergenic | 45.0% | |
| ATCAAGCAGTGTCATGCACT+TGG | - | chr6_1:31343780-31343799 | Msa0882310:intron | 45.0% | |
| CACGCTCACACATATTGAGT+TGG | - | chr6_1:31344122-31344141 | Msa0882310:CDS | 45.0% | |
| GGTTCGTGAACCTAGTGTAA+CGG | - | chr6_1:31344223-31344242 | Msa0882310:CDS | 45.0% | |
| CTGATATAACGCCCTCTTGA+TGG | - | chr6_1:31344335-31344354 | Msa0882310:intron | 45.0% | |
| GTAAGAGGGCGAATTTGATG+TGG | + | chr6_1:31344395-31344414 | None:intergenic | 45.0% | |
| ! | TGCAGGACTTGCTTGTATGA+CGG | - | chr6_1:31344646-31344665 | Msa0882310:intron | 45.0% |
| GACTAGTGCCATCAGAAATG+TGG | + | chr6_1:31344684-31344703 | None:intergenic | 45.0% | |
| TGTGGCATTACGGTATTCGT+AGG | - | chr6_1:31344864-31344883 | Msa0882310:intron | 45.0% | |
| CACGGACAATTCCTAGACTA+GGG | + | chr6_1:31344946-31344965 | None:intergenic | 45.0% | |
| ACACGGACAATTCCTAGACT+AGG | + | chr6_1:31344947-31344966 | None:intergenic | 45.0% | |
| AGTAGATGAGTCCAATCCCT+GGG | + | chr6_1:31344970-31344989 | None:intergenic | 45.0% | |
| AGGGATTGGACTCATCTACT+CGG | - | chr6_1:31344970-31344989 | Msa0882310:intron | 45.0% | |
| ATCTACTCGGAACTTGCAAC+TGG | - | chr6_1:31344983-31345002 | Msa0882310:intron | 45.0% | |
| ACGAAGTGGGTGAATATCGA+TGG | + | chr6_1:31345013-31345032 | None:intergenic | 45.0% | |
| !! | CAGGAAGGTTTGTTACGAAG+TGG | + | chr6_1:31345027-31345046 | None:intergenic | 45.0% |
| ACACCTTGTGAAATGCAGGA+AGG | + | chr6_1:31345042-31345061 | None:intergenic | 45.0% | |
| TCCTGCATTTCACAAGGTGT+TGG | - | chr6_1:31345042-31345061 | Msa0882310:intron | 45.0% | |
| ACCAACACCTTGTGAAATGC+AGG | + | chr6_1:31345046-31345065 | None:intergenic | 45.0% | |
| TCAGGTGAGACATATGGTAC+AGG | + | chr6_1:31345091-31345110 | None:intergenic | 45.0% | |
| CGTTCTTCAGGTGAGACATA+TGG | + | chr6_1:31345097-31345116 | None:intergenic | 45.0% | |
| GCTTCAGAACTCGAGAATTG+CGG | + | chr6_1:31345271-31345290 | None:intergenic | 45.0% | |
| GATGGAAGGATGGCTGTTAT+AGG | - | chr6_1:31345301-31345320 | Msa0882310:intron | 45.0% | |
| !! | TGGAGTTGATTCGAAGCTTC+TGG | + | chr6_1:31345329-31345348 | None:intergenic | 45.0% |
| !! | AAGTAAGAAGGCGTCGAGTA+AGG | - | chr6_1:31345458-31345477 | Msa0882310:intron | 45.0% |
| TTTCAACTGCCTAACAACCC+TGG | - | chr6_1:31345481-31345500 | Msa0882310:intron | 45.0% | |
| TGATCCAATCCAGGGTTGTT+AGG | + | chr6_1:31345493-31345512 | None:intergenic | 45.0% | |
| GGCTGGAGTTGCGTATATAA+TGG | - | chr6_1:31345555-31345574 | Msa0882310:intron | 45.0% | |
| AATGGGACACTCGTATGTGA+AGG | - | chr6_1:31345573-31345592 | Msa0882310:intron | 45.0% | |
| CGTTTCTGCGAAAGAATTGC+AGG | - | chr6_1:31345647-31345666 | Msa0882310:intron | 45.0% | |
| !! | GGGCGTCGAATTTGGATTGT+CGG | - | chr6_1:31340834-31340853 | Msa0882310:CDS | 50.0% |
| ACACACTAACCGCGTGTATG+CGG | + | chr6_1:31340874-31340893 | None:intergenic | 50.0% | |
| TTGAGGGGAGACCACACTAA+AGG | - | chr6_1:31341061-31341080 | Msa0882310:CDS | 50.0% | |
| ! | TTGGTTGGCCACCTTTAGTG+TGG | + | chr6_1:31341075-31341094 | None:intergenic | 50.0% |
| TAGGGAGTCTCCCCTTGAAT+TGG | - | chr6_1:31341157-31341176 | Msa0882310:CDS | 50.0% | |
| AGGGAGTCTCCCCTTGAATT+GGG | - | chr6_1:31341158-31341177 | Msa0882310:CDS | 50.0% | |
| ACCATCCGATCTCGATGCAA+CGG | - | chr6_1:31341318-31341337 | Msa0882310:CDS | 50.0% | |
| !! | CTCATCGGCAGCTTGTTGAT+TGG | + | chr6_1:31341995-31342014 | None:intergenic | 50.0% |
| CAATCAACAAGCTGCCGATG+AGG | - | chr6_1:31341993-31342012 | Msa0882310:intron | 50.0% | |
| ! | GTCTCCGCTGAAGACGTTTT+TGG | - | chr6_1:31342062-31342081 | Msa0882310:intron | 50.0% |
| !! | CGTACTGTTTGGTGCTTGCA+TGG | - | chr6_1:31342122-31342141 | Msa0882310:intron | 50.0% |
| GCTTGCATGGTCATAGGTGA+TGG | - | chr6_1:31342135-31342154 | Msa0882310:intron | 50.0% | |
| GATACCGATGCCAGAACTGT+AGG | + | chr6_1:31342761-31342780 | None:intergenic | 50.0% | |
| !! | ACAGTTCTGGCATCGGTATC+AGG | - | chr6_1:31342761-31342780 | Msa0882310:intron | 50.0% |
| CCAGTATGAGACATGCTAGC+AGG | + | chr6_1:31342917-31342936 | None:intergenic | 50.0% | |
| CCTGCTAGCATGTCTCATAC+TGG | - | chr6_1:31342914-31342933 | Msa0882310:intron | 50.0% | |
| CTCTGTGTGTTCCGCAATGT+TGG | + | chr6_1:31342956-31342975 | None:intergenic | 50.0% | |
| AGGGTTGGATTTCTCTCGGA+GGG | - | chr6_1:31343123-31343142 | Msa0882310:CDS | 50.0% | |
| GGGATACTTCTCTGCATCAC+CGG | - | chr6_1:31343143-31343162 | Msa0882310:CDS | 50.0% | |
| TATCTTACGTGGACCGCACA+TGG | - | chr6_1:31343193-31343212 | Msa0882310:CDS | 50.0% | |
| TGAAAAGGTCCTGCCATGTG+CGG | + | chr6_1:31343209-31343228 | None:intergenic | 50.0% | |
| CTACCTTGGCCGCTATTGTT+GGG | - | chr6_1:31343724-31343743 | Msa0882310:intron | 50.0% | |
| AGGTGTGTACGACTTTGACG+CGG | + | chr6_1:31343815-31343834 | None:intergenic | 50.0% | |
| ! | TATAGGTTGGGGGCTAGTGT+TGG | + | chr6_1:31344300-31344319 | None:intergenic | 50.0% |
| ! | CGAAGGCGTGTATCTATCAG+CGG | - | chr6_1:31344769-31344788 | Msa0882310:intron | 50.0% |
| ! | GCGTTCCTAAAAGTGCACCA+GGG | - | chr6_1:31344791-31344810 | Msa0882310:intron | 50.0% |
| ! | TTCCTAAAAGTGCACCAGGG+AGG | - | chr6_1:31344794-31344813 | Msa0882310:intron | 50.0% |
| ! | ATCCTCCCTGGTGCACTTTT+AGG | + | chr6_1:31344799-31344818 | None:intergenic | 50.0% |
| ! | TAAAAGTGCACCAGGGAGGA+TGG | - | chr6_1:31344798-31344817 | Msa0882310:intron | 50.0% |
| ! | AAAAGTGCACCAGGGAGGAT+GGG | - | chr6_1:31344799-31344818 | Msa0882310:intron | 50.0% |
| TAGGAATTGTCCGTGTCCCA+GGG | - | chr6_1:31344951-31344970 | Msa0882310:intron | 50.0% | |
| GAGTAGATGAGTCCAATCCC+TGG | + | chr6_1:31344971-31344990 | None:intergenic | 50.0% | |
| GATATGGTCGTGGACAAGCT+CGG | + | chr6_1:31345132-31345151 | None:intergenic | 50.0% | |
| GTTTATCCAGATGGAGGCAG+TGG | - | chr6_1:31345243-31345262 | Msa0882310:intron | 50.0% | |
| ACTCGACGCCTTCTTACTTG+CGG | + | chr6_1:31345457-31345476 | None:intergenic | 50.0% | |
| ACTGCCTAACAACCCTGGAT+TGG | - | chr6_1:31345486-31345505 | Msa0882310:intron | 50.0% | |
| TTAATCCAAGCCAAGGAGGC+TGG | - | chr6_1:31345538-31345557 | Msa0882310:intron | 50.0% | |
| GACACTCGTATGTGAAGGCA+AGG | - | chr6_1:31345578-31345597 | Msa0882310:intron | 50.0% | |
| AGGGTCGGTTGTACCTGAGA+AGG | + | chr6_1:31340304-31340323 | None:intergenic | 55.0% | |
| !! | GTTGGGAAGGGCGTCGAATT+TGG | - | chr6_1:31340826-31340845 | Msa0882310:CDS | 55.0% |
| ACACGCGGTTAGTGTGTCAG+TGG | - | chr6_1:31340877-31340896 | Msa0882310:CDS | 55.0% | |
| GTTAGTGTGTCAGTGGCCGT+TGG | - | chr6_1:31340884-31340903 | Msa0882310:CDS | 55.0% | |
| AGGGGAGACCACACTAAAGG+TGG | - | chr6_1:31341064-31341083 | Msa0882310:CDS | 55.0% | |
| CACTCGCACAGTTGTCACGT+CGG | - | chr6_1:31341206-31341225 | Msa0882310:CDS | 55.0% | |
| AGTGGCCGTTGCATCGAGAT+CGG | + | chr6_1:31341326-31341345 | None:intergenic | 55.0% | |
| !! | AGCGCCGATGATAACGGTGA+AGG | - | chr6_1:31341813-31341832 | Msa0882310:intron | 55.0% |
| GTACGACGACAGCTCCTCAT+CGG | + | chr6_1:31342010-31342029 | None:intergenic | 55.0% | |
| TACGGTCCTTCATCGCAGAC+TGG | - | chr6_1:31342033-31342052 | Msa0882310:intron | 55.0% | |
| AAACGTCTTCAGCGGAGACG+AGG | + | chr6_1:31342061-31342080 | None:intergenic | 55.0% | |
| CAGGGTTGGATTTCTCTCGG+AGG | - | chr6_1:31343122-31343141 | Msa0882310:CDS | 55.0% | |
| GCTACCTTGGCCGCTATTGT+TGG | - | chr6_1:31343723-31343742 | Msa0882310:intron | 55.0% | |
| ACTCCCAACAATAGCGGCCA+AGG | + | chr6_1:31343730-31343749 | None:intergenic | 55.0% | |
| GTGTGTACGACTTTGACGCG+GGG | + | chr6_1:31343813-31343832 | None:intergenic | 55.0% | |
| GGTGTGTACGACTTTGACGC+GGG | + | chr6_1:31343814-31343833 | None:intergenic | 55.0% | |
| ! | GGCGTTCCTAAAAGTGCACC+AGG | - | chr6_1:31344790-31344809 | Msa0882310:intron | 55.0% |
| CTAGGTTTGGGCCCTAGTCT+AGG | - | chr6_1:31344932-31344951 | Msa0882310:intron | 55.0% | |
| CTAGGAATTGTCCGTGTCCC+AGG | - | chr6_1:31344950-31344969 | Msa0882310:intron | 55.0% | |
| ATTGTCCGTGTCCCAGGGAT+TGG | - | chr6_1:31344956-31344975 | Msa0882310:intron | 55.0% | |
| TGAGTCCAATCCCTGGGACA+CGG | + | chr6_1:31344964-31344983 | None:intergenic | 55.0% | |
| TGCTCGGCCGAAATCAAGCT+TGG | + | chr6_1:31345349-31345368 | None:intergenic | 55.0% | |
| AGTTGATTGCAAGCGGCGCA+GGG | + | chr6_1:31345419-31345438 | None:intergenic | 55.0% | |
| ! | AAGTTGATTGCAAGCGGCGC+AGG | + | chr6_1:31345420-31345439 | None:intergenic | 55.0% |
| CTCGACGCCTTCTTACTTGC+GGG | + | chr6_1:31345456-31345475 | None:intergenic | 55.0% | |
| ATACGCAACTCCAGCCTCCT+TGG | + | chr6_1:31345551-31345570 | None:intergenic | 55.0% | |
| GGAATGTTGAGAGCCACAGC+TGG | + | chr6_1:31345676-31345695 | None:intergenic | 55.0% | |
| CGTGACAACTGTGCGAGTGC+TGG | + | chr6_1:31341205-31341224 | None:intergenic | 60.0% | |
| TCGCACAGTTGTCACGTCGG+AGG | - | chr6_1:31341209-31341228 | Msa0882310:CDS | 60.0% | |
| GTTGTCACGTCGGAGGTCGT+TGG | - | chr6_1:31341216-31341235 | Msa0882310:CDS | 60.0% | |
| GCCGTTGCATCGAGATCGGA+TGG | + | chr6_1:31341322-31341341 | None:intergenic | 60.0% | |
| TTCGAGGGGAGACTCCGTGA+CGG | - | chr6_1:31341359-31341378 | Msa0882310:CDS | 60.0% | |
| GAGGCTCCAGTCTGCGATGA+AGG | + | chr6_1:31342042-31342061 | None:intergenic | 60.0% | |
| GCTAGCAGGACAAGTTCGCC+TGG | + | chr6_1:31342903-31342922 | None:intergenic | 60.0% | |
| TTACGTGGACCGCACATGGC+AGG | - | chr6_1:31343197-31343216 | Msa0882310:CDS | 60.0% | |
| GCAAACATGGCTTCGGCTCC+TGG | + | chr6_1:31343344-31343363 | None:intergenic | 60.0% | |
| CAAGAGGAACCCATCCTCCC+TGG | + | chr6_1:31344811-31344830 | None:intergenic | 60.0% | |
| CAACTCCAGCCTCCTTGGCT+TGG | + | chr6_1:31345546-31345565 | None:intergenic | 60.0% | |
| GAATTGCAGGGGTCCAGCTG+TGG | - | chr6_1:31345660-31345679 | Msa0882310:intron | 60.0% | |
| GCGGTTCCACTGCCTCCATC+TGG | + | chr6_1:31345252-31345271 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 31340217 | 31345974 | 31340217 | ID=Msa0882310;Name=Msa0882310 |
| chr6_1 | mRNA | 31340217 | 31345974 | 31340217 | ID=Msa0882310-mRNA-1;Parent=Msa0882310;Name=Msa0882310-mRNA-1;_AED=0.09;_eAED=0.09;_QI=48|1|1|1|1|1|9|236|784 |
| chr6_1 | exon | 31340217 | 31341540 | 31340217 | ID=Msa0882310-mRNA-1:exon:7772;Parent=Msa0882310-mRNA-1 |
| chr6_1 | exon | 31342243 | 31342497 | 31342243 | ID=Msa0882310-mRNA-1:exon:7771;Parent=Msa0882310-mRNA-1 |
| chr6_1 | exon | 31342601 | 31342715 | 31342601 | ID=Msa0882310-mRNA-1:exon:7770;Parent=Msa0882310-mRNA-1 |
| chr6_1 | exon | 31342794 | 31342846 | 31342794 | ID=Msa0882310-mRNA-1:exon:7769;Parent=Msa0882310-mRNA-1 |
| chr6_1 | exon | 31343027 | 31343287 | 31343027 | ID=Msa0882310-mRNA-1:exon:7768;Parent=Msa0882310-mRNA-1 |
| chr6_1 | exon | 31343376 | 31343426 | 31343376 | ID=Msa0882310-mRNA-1:exon:7767;Parent=Msa0882310-mRNA-1 |
| chr6_1 | exon | 31344011 | 31344256 | 31344011 | ID=Msa0882310-mRNA-1:exon:7766;Parent=Msa0882310-mRNA-1 |
| chr6_1 | exon | 31344357 | 31344597 | 31344357 | ID=Msa0882310-mRNA-1:exon:7765;Parent=Msa0882310-mRNA-1 |
| chr6_1 | exon | 31345882 | 31345974 | 31345882 | ID=Msa0882310-mRNA-1:exon:7764;Parent=Msa0882310-mRNA-1 |
| chr6_1 | five_prime_UTR | 31345927 | 31345974 | 31345927 | ID=Msa0882310-mRNA-1:five_prime_utr;Parent=Msa0882310-mRNA-1 |
| chr6_1 | CDS | 31345882 | 31345926 | 31345882 | ID=Msa0882310-mRNA-1:cds;Parent=Msa0882310-mRNA-1 |
| chr6_1 | CDS | 31344357 | 31344597 | 31344357 | ID=Msa0882310-mRNA-1:cds;Parent=Msa0882310-mRNA-1 |
| chr6_1 | CDS | 31344011 | 31344256 | 31344011 | ID=Msa0882310-mRNA-1:cds;Parent=Msa0882310-mRNA-1 |
| chr6_1 | CDS | 31343376 | 31343426 | 31343376 | ID=Msa0882310-mRNA-1:cds;Parent=Msa0882310-mRNA-1 |
| chr6_1 | CDS | 31343027 | 31343287 | 31343027 | ID=Msa0882310-mRNA-1:cds;Parent=Msa0882310-mRNA-1 |
| chr6_1 | CDS | 31342794 | 31342846 | 31342794 | ID=Msa0882310-mRNA-1:cds;Parent=Msa0882310-mRNA-1 |
| chr6_1 | CDS | 31342601 | 31342715 | 31342601 | ID=Msa0882310-mRNA-1:cds;Parent=Msa0882310-mRNA-1 |
| chr6_1 | CDS | 31342243 | 31342497 | 31342243 | ID=Msa0882310-mRNA-1:cds;Parent=Msa0882310-mRNA-1 |
| chr6_1 | CDS | 31340453 | 31341540 | 31340453 | ID=Msa0882310-mRNA-1:cds;Parent=Msa0882310-mRNA-1 |
| chr6_1 | three_prime_UTR | 31340217 | 31340452 | 31340217 | ID=Msa0882310-mRNA-1:three_prime_utr;Parent=Msa0882310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
