AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0513580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 144 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTCCTCTCAATTTATT+TGG 0.066976 3_4:+63849065 None:intergenic
ACAACAAGATTGGAGAATTT+TGG 0.158344 3_4:-63848638 Msa0513580:three_prime_UTR
TGATGAGAAGGGTAACTTAT+TGG 0.227907 3_4:-63848970 Msa0513580:three_prime_UTR
GCTAGGATTGATAAAGAATT+TGG 0.238807 3_4:-63848864 Msa0513580:three_prime_UTR
TTCCGATTCTCGCTGCTTGC+AGG 0.245624 3_4:+63850454 None:intergenic
CTCTCAGCAGGGTTGTTATA+AGG 0.249237 3_4:+63849215 None:intergenic
GATAGCAATTAATTGTCTTT+TGG 0.266884 3_4:-63848308 Msa0513580:three_prime_UTR
CAAACTCGTATAAAATAATT+CGG 0.271674 3_4:+63849031 None:intergenic
TTCTGCTTCAATTGATTCCT+TGG 0.285857 3_4:+63849187 None:intergenic
GTTCACCTTGCTCCTGATCT+TGG 0.289171 3_4:-63849503 Msa0513580:three_prime_UTR
GAGATAGCATAAGAAGCTTT+TGG 0.290608 3_4:+63849555 None:intergenic
TCTCTCTCTTCTCATTCTCT+TGG 0.292427 3_4:+63848893 None:intergenic
AGGTGTTTCCTGTACAAGTT+AGG 0.301129 3_4:+63850410 None:intergenic
TTGTTATAAGGGCACACTTC+TGG 0.313439 3_4:+63849227 None:intergenic
TAACAACCCTGCTGAGAGTT+TGG 0.314464 3_4:-63849210 Msa0513580:three_prime_UTR
TCATTCCTCTCAATTTATTT+GGG 0.340961 3_4:+63849066 None:intergenic
TCTCCATCATAATCATAATA+TGG 0.341694 3_4:+63848467 None:intergenic
ACCCATTTCAGAAAGGAGTT+TGG 0.341767 3_4:-63849092 Msa0513580:three_prime_UTR
GTCCATCCATTTATCTTGTA+AGG 0.345869 3_4:+63848929 None:intergenic
GTCCAAACTCCTTTCTGAAA+TGG 0.358720 3_4:+63849090 None:intergenic
CTGGATGGTCATTGCACAAC+CGG 0.365261 3_4:+63849459 None:intergenic
ATCGTCTATTTCAACAGTAT+TGG 0.374767 3_4:-63849588 Msa0513580:three_prime_UTR
TTCAAAGATGATTATGATGA+TGG 0.377284 3_4:-63848729 Msa0513580:three_prime_UTR
ACTGCAAGTGCGGCTGCAGC+TGG 0.378235 3_4:+63849629 None:intergenic
CACAACCGGGATCTAAAATT+AGG 0.378289 3_4:+63849473 None:intergenic
TTAATCGGAAGAAAATGTTT+TGG 0.380320 3_4:+63849815 None:intergenic
TTGAGAGGTGTGGGTGGCCA+TGG 0.383690 3_4:+63849692 None:intergenic
GCTGTTATAAGAGAGGTTCT+TGG 0.393796 3_4:-63849152 Msa0513580:three_prime_UTR
AAAGAGAGAGAAATTTGTTA+AGG 0.395361 3_4:+63850390 None:intergenic
TCTCAGCAGGGTTGTTATAA+GGG 0.401018 3_4:+63849216 None:intergenic
TCCAAACTCCTTTCTGAAAT+GGG 0.403617 3_4:+63849091 None:intergenic
TCCCTGCAAGCAGCGAGAAT+CGG 0.406237 3_4:-63850456 Msa0513580:CDS
GATTTGTTTGACAACAAGAT+TGG 0.413459 3_4:-63848648 Msa0513580:three_prime_UTR
AAACTCGTATAAAATAATTC+GGG 0.414063 3_4:+63849032 None:intergenic
TCAATGATCTTGAATTTGTC+TGG 0.419429 3_4:+63849440 None:intergenic
CTCAATTGTTTGAACTTCAA+AGG 0.419774 3_4:+63849314 None:intergenic
TTAAAATTCTGTCCAAATGT+AGG 0.422916 3_4:-63849796 Msa0513580:three_prime_UTR
TCTTCTTCCCTAACTTGTAC+AGG 0.430252 3_4:-63850418 Msa0513580:CDS
TTCATACGTTAAGTAAAGGT+TGG 0.432721 3_4:-63848532 Msa0513580:three_prime_UTR
TCCTTGGCCAAACTCTCAGC+AGG 0.434855 3_4:+63849203 None:intergenic
TGAAAGATAAGCCCTACATT+TGG 0.441339 3_4:+63849784 None:intergenic
CCTTTCTTAGTCAGCAATAA+CGG 0.444662 3_4:-63850055 Msa0513580:three_prime_UTR
TCTCATCAAATCGCTCTACT+AGG 0.444788 3_4:+63848985 None:intergenic
CAACTATTAAATCAAGAGAA+TGG 0.444997 3_4:+63849342 None:intergenic
TGGGACTCACGCGGAGGTAA+AGG 0.457292 3_4:+63849362 None:intergenic
GAAGAGAGAGAAGGAAGGCT+AGG 0.457822 3_4:-63848881 Msa0513580:three_prime_UTR
AACTATTAAATCAAGAGAAT+GGG 0.459579 3_4:+63849343 None:intergenic
CCAACTTTGCCAGTAGTAAC+CGG 0.459749 3_4:+63849525 None:intergenic
TTGTCATGAGGAACAGAATC+CGG 0.464090 3_4:-63849874 Msa0513580:three_prime_UTR
TAAAATTCTGTCCAAATGTA+GGG 0.464670 3_4:-63849795 Msa0513580:three_prime_UTR
TGAGGATATATTTGAAGACT+TGG 0.466248 3_4:-63848703 Msa0513580:three_prime_UTR
TTTGTACTTGTACATATTGA+AGG 0.468040 3_4:-63848342 Msa0513580:three_prime_UTR
TAATTTAAAGAGGCCTCACC+GGG 0.468128 3_4:-63849276 Msa0513580:three_prime_UTR
GTGGAACTGAGGGAATTTAC+CGG 0.468878 3_4:+63850031 None:intergenic
GAAAGGGGCTTAATTTAAAG+AGG 0.470084 3_4:-63849286 Msa0513580:three_prime_UTR
AAGATCATTGACACTTCCTA+TGG 0.476208 3_4:-63849428 Msa0513580:three_prime_UTR
TTCGCGACCGCACTCTTGAC+AGG 0.476319 3_4:-63849901 Msa0513580:three_prime_UTR
TATCTTAACATGTGCCTTGA+GGG 0.479321 3_4:+63848219 None:intergenic
ATAATCAATATCACTGTCAT+CGG 0.482631 3_4:+63848815 None:intergenic
TCCTCACCGCCGGTTACTAC+TGG 0.486639 3_4:-63849534 Msa0513580:three_prime_UTR
TTAATTTAAAGAGGCCTCAC+CGG 0.489651 3_4:-63849277 Msa0513580:three_prime_UTR
TAGGGAAGAAGAAGGAGTTG+AGG 0.491425 3_4:+63850429 None:intergenic
TTTGAAAGGGCAAAGGGACT+CGG 0.493718 3_4:-63849012 Msa0513580:three_prime_UTR
GGTGTTTCCTGTACAAGTTA+GGG 0.496653 3_4:+63850411 None:intergenic
TCTTAACTTTGACAATTACC+AGG 0.497120 3_4:+63848563 None:intergenic
TGCAGCCGCACTTGCAGTTG+AGG 0.498535 3_4:-63849624 Msa0513580:three_prime_UTR
TACGAGTTTGAAAGGGCAAA+GGG 0.499162 3_4:-63849018 Msa0513580:three_prime_UTR
TTGGAATGACAATTGAAAAG+AGG 0.501920 3_4:-63849133 Msa0513580:three_prime_UTR
CCGTTATTGCTGACTAAGAA+AGG 0.503193 3_4:+63850055 None:intergenic
ATGGAGATATTGCTCTATGC+TGG 0.503755 3_4:-63848451 Msa0513580:three_prime_UTR
AAGCTCAAGTGCACGTCCAT+AGG 0.503889 3_4:+63849412 None:intergenic
GTACCATATTATGATTATGA+TGG 0.508672 3_4:-63848470 Msa0513580:three_prime_UTR
TAACTTATTGGAGAAGGATG+AGG 0.511987 3_4:-63848958 Msa0513580:three_prime_UTR
ATAGAAATACACATATCAAA+AGG 0.517759 3_4:-63848190 Msa0513580:three_prime_UTR
CCGGTTACTACTGGCAAAGT+TGG 0.519367 3_4:-63849525 Msa0513580:three_prime_UTR
GGATTGATAAAGAATTTGGC+AGG 0.519833 3_4:-63848860 Msa0513580:three_prime_UTR
TTGAATTGTTTACTATCCCA+TGG 0.520794 3_4:-63849709 Msa0513580:three_prime_UTR
TGTCAAACAAATCGTTTCCC+AGG 0.524973 3_4:+63848658 None:intergenic
ATTGTTTGAACTTCAAAGGT+CGG 0.526316 3_4:+63849318 None:intergenic
GAAGCTGAGGATTATGACCT+GGG 0.526953 3_4:-63848675 Msa0513580:three_prime_UTR
TTAGGAGGAAGACCAAGATC+AGG 0.528609 3_4:+63849491 None:intergenic
TGAGAGGTGTGGGTGGCCAT+GGG 0.529539 3_4:+63849693 None:intergenic
TGAAGCTGAGGATTATGACC+TGG 0.537130 3_4:-63848676 Msa0513580:three_prime_UTR
ACAAGATAAATGGATGGACT+TGG 0.544745 3_4:-63848925 Msa0513580:three_prime_UTR
TAATCAATATCACTGTCATC+GGG 0.545096 3_4:+63848816 None:intergenic
TGTTGTTCCACGAAGAAAAG+TGG 0.545285 3_4:+63850012 None:intergenic
AATCATAATATGGTACATGC+AGG 0.545429 3_4:+63848477 None:intergenic
ATACGAGTTTGAAAGGGCAA+AGG 0.549737 3_4:-63849019 Msa0513580:three_prime_UTR
TCCGATTCTCGCTGCTTGCA+GGG 0.550490 3_4:+63850455 None:intergenic
AATGTTAACTTGTGCCCTCA+AGG 0.550827 3_4:-63848233 Msa0513580:three_prime_UTR
TGTATCGTGCGATACCAACT+TGG 0.550835 3_4:-63849390 Msa0513580:three_prime_UTR
TCGATGGATCATAGACAGTA+AGG 0.551421 3_4:+63849745 None:intergenic
GACAATTAATTGCTATCGAG+TGG 0.551496 3_4:+63848314 None:intergenic
AGGTAAAGGCTTTGCCAAGT+TGG 0.553621 3_4:+63849376 None:intergenic
GAAGGGTAACTTATTGGAGA+AGG 0.555429 3_4:-63848964 Msa0513580:three_prime_UTR
TTATGCTATCTCCTCACCGC+CGG 0.555653 3_4:-63849544 Msa0513580:three_prime_UTR
CCACTTGACCCATTTCAGAA+AGG 0.560006 3_4:-63849099 Msa0513580:three_prime_UTR
AAACAATTGAGACTTCGAAA+GGG 0.564618 3_4:-63849302 Msa0513580:three_prime_UTR
CAAACAATTGAGACTTCGAA+AGG 0.569475 3_4:-63849303 Msa0513580:three_prime_UTR
AATGAGAAGAGAGAGAAGGA+AGG 0.573040 3_4:-63848886 Msa0513580:three_prime_UTR
CTTAGTTGCGTTGAGAGGTG+TGG 0.573460 3_4:+63849682 None:intergenic
CCTTTCTGAAATGGGTCAAG+TGG 0.574688 3_4:+63849099 None:intergenic
TGATCTTGAATTTGTCTGGA+TGG 0.575399 3_4:+63849444 None:intergenic
CAAACTTTAGCAAGTAATCC+CGG 0.575661 3_4:+63849258 None:intergenic
GTACAAGTTAGGGAAGAAGA+AGG 0.576716 3_4:+63850421 None:intergenic
GGACTCCCAAATAAATTGAG+AGG 0.578071 3_4:-63849071 Msa0513580:three_prime_UTR
CAATTCCTCAACTGCAAGTG+CGG 0.581658 3_4:+63849619 None:intergenic
AGTAGAGCGATTTGATGAGA+AGG 0.582051 3_4:-63848982 Msa0513580:three_prime_UTR
CCCTGCTGAGAGTTTGGCCA+AGG 0.582438 3_4:-63849204 Msa0513580:three_prime_UTR
AACAATTGAGACTTCGAAAG+GGG 0.584929 3_4:-63849301 Msa0513580:three_prime_UTR
TATAACTTAGTTGCGTTGAG+AGG 0.585447 3_4:+63849677 None:intergenic
ATAATATGGTACATGCAGGC+TGG 0.586468 3_4:+63848481 None:intergenic
CTTAGTCAGCAATAACGGAC+CGG 0.589570 3_4:-63850050 Msa0513580:three_prime_UTR
ATAAATGGATGGACTTGGCG+AGG 0.596180 3_4:-63848920 Msa0513580:three_prime_UTR
TGGATGGTCATTGCACAACC+GGG 0.597590 3_4:+63849460 None:intergenic
AGCCTTACAAGATAAATGGA+TGG 0.598756 3_4:-63848931 Msa0513580:three_prime_UTR
TTAGTTGCGTTGAGAGGTGT+GGG 0.602056 3_4:+63849683 None:intergenic
GTATCTTAACATGTGCCTTG+AGG 0.602355 3_4:+63848218 None:intergenic
ACGAAGAAAAGTGGAACTGA+GGG 0.606364 3_4:+63850021 None:intergenic
CTTAACTTTGACAATTACCA+GGG 0.609265 3_4:+63848564 None:intergenic
GAAGACCAAGATCAGGAGCA+AGG 0.612166 3_4:+63849498 None:intergenic
ATGTTGTGCTGTTATAAGAG+AGG 0.617545 3_4:-63849159 Msa0513580:three_prime_UTR
AACCGGGATCTAAAATTAGG+AGG 0.618298 3_4:+63849476 None:intergenic
TATTGCTGACTAAGAAAGGA+TGG 0.618511 3_4:+63850059 None:intergenic
AATTGAGAGGAATGATTGTG+AGG 0.622196 3_4:-63849058 Msa0513580:three_prime_UTR
CACGAAGAAAAGTGGAACTG+AGG 0.624701 3_4:+63850020 None:intergenic
TAAATGGATGGACTTGGCGA+GGG 0.625962 3_4:-63848919 Msa0513580:three_prime_UTR
GTAGAGCGATTTGATGAGAA+GGG 0.626749 3_4:-63848981 Msa0513580:three_prime_UTR
GCCAGTAGTAACCGGCGGTG+AGG 0.629295 3_4:+63849533 None:intergenic
ATAGAGAACAGAAGCAACCC+TGG 0.633738 3_4:-63848581 Msa0513580:three_prime_UTR
GTCAAACGAACACATAGTTG+AGG 0.640241 3_4:+63849653 None:intergenic
AGAGAATGAGAAGAGAGAGA+AGG 0.640932 3_4:-63848890 Msa0513580:three_prime_UTR
AATTAATTGCTATCGAGTGG+TGG 0.641777 3_4:+63848317 None:intergenic
CCTTGGCCAAACTCTCAGCA+GGG 0.650031 3_4:+63849204 None:intergenic
AACTCGTATAAAATAATTCG+GGG 0.651846 3_4:+63849033 None:intergenic
GTAAAAGTGAGAAAGTTCAG+AGG 0.656838 3_4:-63848367 Msa0513580:three_prime_UTR
TTGACAGGCATGTTGTCATG+AGG 0.677083 3_4:-63849886 Msa0513580:three_prime_UTR
GTTGCGTTGAGAGGTGTGGG+TGG 0.687295 3_4:+63849686 None:intergenic
TCAAGAGAATGGGACTCACG+CGG 0.693646 3_4:+63849353 None:intergenic
CAACATGCCTGTCAAGAGTG+CGG 0.698613 3_4:+63849894 None:intergenic
AGAGAATGGGACTCACGCGG+AGG 0.722473 3_4:+63849356 None:intergenic
TTTAGCAAGTAATCCCGGTG+AGG 0.724164 3_4:+63849263 None:intergenic
ATCATAGACAGTAAGGAACG+AGG 0.740778 3_4:+63849752 None:intergenic
ACTTTGCCAGTAGTAACCGG+CGG 0.778731 3_4:+63849528 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCAATGTATTTTTTTTA+TGG - chr3_4:63850406-63850425 Msa0513580:CDS 10.0%
!!! TTTTCAATGTATTTTTTTTA+TGG - chr3_4:63850406-63850425 Msa0513580:CDS 10.0%
!! AGTTACTAAGCTATAAAATT+TGG + chr3_4:63848334-63848353 None:intergenic 20.0%
!! TGTAGATTAAAGATGAAATT+GGG + chr3_4:63848427-63848446 None:intergenic 20.0%
!! TTGTAGATTAAAGATGAAAT+TGG + chr3_4:63848428-63848447 None:intergenic 20.0%
!! ACAATACTAAATATTTCGAA+AGG - chr3_4:63848444-63848463 Msa0513580:three_prime_UTR 20.0%
!! TTTAATAGATTTACATGACA+TGG + chr3_4:63848480-63848499 None:intergenic 20.0%
!!! TTTTTAAGGTTACATGTTTT+TGG + chr3_4:63848705-63848724 None:intergenic 20.0%
!!! TTGAAACAGATAGATTTTTA+AGG + chr3_4:63848719-63848738 None:intergenic 20.0%
!! GATAGTAAACAATTCAAAAA+TGG + chr3_4:63848952-63848971 None:intergenic 20.0%
!! AACTATTAAATCAAGAGAAT+GGG + chr3_4:63849324-63849343 None:intergenic 20.0%
!! AAACTCGTATAAAATAATTC+GGG + chr3_4:63849635-63849654 None:intergenic 20.0%
!! CAAACTCGTATAAAATAATT+CGG + chr3_4:63849636-63849655 None:intergenic 20.0%
!!! TTATTTTATACGAGTTTGAA+AGG - chr3_4:63849638-63849657 Msa0513580:three_prime_UTR 20.0%
!!! TATTTTATACGAGTTTGAAA+GGG - chr3_4:63849639-63849658 Msa0513580:three_prime_UTR 20.0%
!!! AATTTTCATACGTTAAGTAA+AGG - chr3_4:63850128-63850147 Msa0513580:intron 20.0%
!! ATAGAAATACACATATCAAA+AGG - chr3_4:63850474-63850493 Msa0513580:CDS 20.0%
!! AGTTACTAAGCTATAAAATT+TGG + chr3_4:63848334-63848353 None:intergenic 20.0%
!! TGTAGATTAAAGATGAAATT+GGG + chr3_4:63848427-63848446 None:intergenic 20.0%
!! TTGTAGATTAAAGATGAAAT+TGG + chr3_4:63848428-63848447 None:intergenic 20.0%
!! ACAATACTAAATATTTCGAA+AGG - chr3_4:63848444-63848463 Msa0513580:three_prime_UTR 20.0%
!! TTTAATAGATTTACATGACA+TGG + chr3_4:63848480-63848499 None:intergenic 20.0%
!!! TTTTTAAGGTTACATGTTTT+TGG + chr3_4:63848705-63848724 None:intergenic 20.0%
!!! TTGAAACAGATAGATTTTTA+AGG + chr3_4:63848719-63848738 None:intergenic 20.0%
!! GATAGTAAACAATTCAAAAA+TGG + chr3_4:63848952-63848971 None:intergenic 20.0%
!! AACTATTAAATCAAGAGAAT+GGG + chr3_4:63849324-63849343 None:intergenic 20.0%
!! AAACTCGTATAAAATAATTC+GGG + chr3_4:63849635-63849654 None:intergenic 20.0%
!! CAAACTCGTATAAAATAATT+CGG + chr3_4:63849636-63849655 None:intergenic 20.0%
!!! TTATTTTATACGAGTTTGAA+AGG - chr3_4:63849638-63849657 Msa0513580:three_prime_UTR 20.0%
!!! TATTTTATACGAGTTTGAAA+GGG - chr3_4:63849639-63849658 Msa0513580:three_prime_UTR 20.0%
!!! AATTTTCATACGTTAAGTAA+AGG - chr3_4:63850128-63850147 Msa0513580:intron 20.0%
!! ATAGAAATACACATATCAAA+AGG - chr3_4:63850474-63850493 Msa0513580:CDS 20.0%
!!! AGACTGTTTTTTTTTTCTTG+TGG + chr3_4:63848144-63848163 None:intergenic 25.0%
!!! AAAGAGAGAGAAATTTGTTA+AGG + chr3_4:63848277-63848296 None:intergenic 25.0%
! AAATTTGGCAGCATATATAT+GGG + chr3_4:63848319-63848338 None:intergenic 25.0%
! AAAATTTGGCAGCATATATA+TGG + chr3_4:63848320-63848339 None:intergenic 25.0%
! ACCTGAAAATGAAAACAAAA+GGG + chr3_4:63848540-63848559 None:intergenic 25.0%
! AACCTGAAAATGAAAACAAA+AGG + chr3_4:63848541-63848560 None:intergenic 25.0%
! TGGTTGAAGTCTTAAAAAAA+TGG - chr3_4:63848575-63848594 Msa0513580:three_prime_UTR 25.0%
!! TTAATCGGAAGAAAATGTTT+TGG + chr3_4:63848852-63848871 None:intergenic 25.0%
!!! CATTTGGACAGAATTTTAAT+CGG + chr3_4:63848867-63848886 None:intergenic 25.0%
! TTAAAATTCTGTCCAAATGT+AGG - chr3_4:63848868-63848887 Msa0513580:three_prime_UTR 25.0%
! TAAAATTCTGTCCAAATGTA+GGG - chr3_4:63848869-63848888 Msa0513580:three_prime_UTR 25.0%
! GTAAACAATTCAAAAATGGA+TGG + chr3_4:63848948-63848967 None:intergenic 25.0%
! CAACTATTAAATCAAGAGAA+TGG + chr3_4:63849325-63849344 None:intergenic 25.0%
! TCATTCCTCTCAATTTATTT+GGG + chr3_4:63849601-63849620 None:intergenic 25.0%
! ATCATTCCTCTCAATTTATT+TGG + chr3_4:63849602-63849621 None:intergenic 25.0%
! AACTCGTATAAAATAATTCG+GGG + chr3_4:63849634-63849653 None:intergenic 25.0%
!!! TTTTAGCCTTACAAGATAAA+TGG - chr3_4:63849729-63849748 Msa0513580:three_prime_UTR 25.0%
! ATAATCAATATCACTGTCAT+CGG + chr3_4:63849852-63849871 None:intergenic 25.0%
! TTCAAAGATGATTATGATGA+TGG - chr3_4:63849896-63849915 Msa0513580:three_prime_UTR 25.0%
!! TTTTCCAATTCAAAATGGTT+CGG - chr3_4:63850060-63850079 Msa0513580:three_prime_UTR 25.0%
! GTACCATATTATGATTATGA+TGG - chr3_4:63850194-63850213 Msa0513580:intron 25.0%
! TCTCCATCATAATCATAATA+TGG + chr3_4:63850200-63850219 None:intergenic 25.0%
! TTTGTACTTGTACATATTGA+AGG - chr3_4:63850322-63850341 Msa0513580:intron 25.0%
!! GATAGCAATTAATTGTCTTT+TGG - chr3_4:63850356-63850375 Msa0513580:intron 25.0%
!!! AGACTGTTTTTTTTTTCTTG+TGG + chr3_4:63848144-63848163 None:intergenic 25.0%
!!! AAAGAGAGAGAAATTTGTTA+AGG + chr3_4:63848277-63848296 None:intergenic 25.0%
! AAATTTGGCAGCATATATAT+GGG + chr3_4:63848319-63848338 None:intergenic 25.0%
! AAAATTTGGCAGCATATATA+TGG + chr3_4:63848320-63848339 None:intergenic 25.0%
! ACCTGAAAATGAAAACAAAA+GGG + chr3_4:63848540-63848559 None:intergenic 25.0%
! AACCTGAAAATGAAAACAAA+AGG + chr3_4:63848541-63848560 None:intergenic 25.0%
! TGGTTGAAGTCTTAAAAAAA+TGG - chr3_4:63848575-63848594 Msa0513580:three_prime_UTR 25.0%
!! TTAATCGGAAGAAAATGTTT+TGG + chr3_4:63848852-63848871 None:intergenic 25.0%
!!! CATTTGGACAGAATTTTAAT+CGG + chr3_4:63848867-63848886 None:intergenic 25.0%
! TTAAAATTCTGTCCAAATGT+AGG - chr3_4:63848868-63848887 Msa0513580:three_prime_UTR 25.0%
! TAAAATTCTGTCCAAATGTA+GGG - chr3_4:63848869-63848888 Msa0513580:three_prime_UTR 25.0%
! GTAAACAATTCAAAAATGGA+TGG + chr3_4:63848948-63848967 None:intergenic 25.0%
! CAACTATTAAATCAAGAGAA+TGG + chr3_4:63849325-63849344 None:intergenic 25.0%
! TCATTCCTCTCAATTTATTT+GGG + chr3_4:63849601-63849620 None:intergenic 25.0%
! ATCATTCCTCTCAATTTATT+TGG + chr3_4:63849602-63849621 None:intergenic 25.0%
! AACTCGTATAAAATAATTCG+GGG + chr3_4:63849634-63849653 None:intergenic 25.0%
!!! TTTTAGCCTTACAAGATAAA+TGG - chr3_4:63849729-63849748 Msa0513580:three_prime_UTR 25.0%
! ATAATCAATATCACTGTCAT+CGG + chr3_4:63849852-63849871 None:intergenic 25.0%
! TTCAAAGATGATTATGATGA+TGG - chr3_4:63849896-63849915 Msa0513580:three_prime_UTR 25.0%
!! TTTTCCAATTCAAAATGGTT+CGG - chr3_4:63850060-63850079 Msa0513580:three_prime_UTR 25.0%
! GTACCATATTATGATTATGA+TGG - chr3_4:63850194-63850213 Msa0513580:intron 25.0%
! TCTCCATCATAATCATAATA+TGG + chr3_4:63850200-63850219 None:intergenic 25.0%
! TTTGTACTTGTACATATTGA+AGG - chr3_4:63850322-63850341 Msa0513580:intron 25.0%
!! GATAGCAATTAATTGTCTTT+TGG - chr3_4:63850356-63850375 Msa0513580:intron 25.0%
AATTTGGCAGCATATATATG+GGG + chr3_4:63848318-63848337 None:intergenic 30.0%
ACACAGACATTTAATCAAAC+AGG + chr3_4:63848372-63848391 None:intergenic 30.0%
GTTTGATTAAATGTCTGTGT+TGG - chr3_4:63848372-63848391 Msa0513580:three_prime_UTR 30.0%
GATTAAAGATGAAATTGGGA+TGG + chr3_4:63848423-63848442 None:intergenic 30.0%
!!! TCCCTTTTGTTTTCATTTTC+AGG - chr3_4:63848536-63848555 Msa0513580:three_prime_UTR 30.0%
CTATTCACAGAAAAAGATGA+AGG + chr3_4:63848678-63848697 None:intergenic 30.0%
! TTTTCAGCTTTTGAACAAAC+CGG + chr3_4:63848812-63848831 None:intergenic 30.0%
TTGAATTGTTTACTATCCCA+TGG - chr3_4:63848955-63848974 Msa0513580:three_prime_UTR 30.0%
ATCGTCTATTTCAACAGTAT+TGG - chr3_4:63849076-63849095 Msa0513580:three_prime_UTR 30.0%
TCAATGATCTTGAATTTGTC+TGG + chr3_4:63849227-63849246 None:intergenic 30.0%
ATTGTTTGAACTTCAAAGGT+CGG + chr3_4:63849349-63849368 None:intergenic 30.0%
CTCAATTGTTTGAACTTCAA+AGG + chr3_4:63849353-63849372 None:intergenic 30.0%
AAACAATTGAGACTTCGAAA+GGG - chr3_4:63849362-63849381 Msa0513580:three_prime_UTR 30.0%
TTGGAATGACAATTGAAAAG+AGG - chr3_4:63849531-63849550 Msa0513580:three_prime_UTR 30.0%
GCTAGGATTGATAAAGAATT+TGG - chr3_4:63849800-63849819 Msa0513580:three_prime_UTR 30.0%
TAATCAATATCACTGTCATC+GGG + chr3_4:63849851-63849870 None:intergenic 30.0%
!!! TGATTATGATGATGGTTTTG+AGG - chr3_4:63849943-63849962 Msa0513580:three_prime_UTR 30.0%
TGAGGATATATTTGAAGACT+TGG - chr3_4:63849961-63849980 Msa0513580:three_prime_UTR 30.0%
! GATTTGTTTGACAACAAGAT+TGG - chr3_4:63850016-63850035 Msa0513580:three_prime_UTR 30.0%
! ACAACAAGATTGGAGAATTT+TGG - chr3_4:63850026-63850045 Msa0513580:three_prime_UTR 30.0%
! GAACCATTTTGAATTGGAAA+AGG + chr3_4:63850061-63850080 None:intergenic 30.0%
CTTAACTTTGACAATTACCA+GGG + chr3_4:63850103-63850122 None:intergenic 30.0%
TCTTAACTTTGACAATTACC+AGG + chr3_4:63850104-63850123 None:intergenic 30.0%
TTCATACGTTAAGTAAAGGT+TGG - chr3_4:63850132-63850151 Msa0513580:intron 30.0%
! GTTGGAATGAATTTTTGATC+TGG - chr3_4:63850150-63850169 Msa0513580:intron 30.0%
! TGAATTTTTGATCTGGCAAA+AGG - chr3_4:63850157-63850176 Msa0513580:intron 30.0%
! GAATTTTTGATCTGGCAAAA+GGG - chr3_4:63850158-63850177 Msa0513580:intron 30.0%
AATCATAATATGGTACATGC+AGG + chr3_4:63850190-63850209 None:intergenic 30.0%
AATTTGGCAGCATATATATG+GGG + chr3_4:63848318-63848337 None:intergenic 30.0%
ACACAGACATTTAATCAAAC+AGG + chr3_4:63848372-63848391 None:intergenic 30.0%
GTTTGATTAAATGTCTGTGT+TGG - chr3_4:63848372-63848391 Msa0513580:three_prime_UTR 30.0%
GATTAAAGATGAAATTGGGA+TGG + chr3_4:63848423-63848442 None:intergenic 30.0%
!!! TCCCTTTTGTTTTCATTTTC+AGG - chr3_4:63848536-63848555 Msa0513580:three_prime_UTR 30.0%
CTATTCACAGAAAAAGATGA+AGG + chr3_4:63848678-63848697 None:intergenic 30.0%
! TTTTCAGCTTTTGAACAAAC+CGG + chr3_4:63848812-63848831 None:intergenic 30.0%
TTGAATTGTTTACTATCCCA+TGG - chr3_4:63848955-63848974 Msa0513580:three_prime_UTR 30.0%
ATCGTCTATTTCAACAGTAT+TGG - chr3_4:63849076-63849095 Msa0513580:three_prime_UTR 30.0%
TCAATGATCTTGAATTTGTC+TGG + chr3_4:63849227-63849246 None:intergenic 30.0%
ATTGTTTGAACTTCAAAGGT+CGG + chr3_4:63849349-63849368 None:intergenic 30.0%
CTCAATTGTTTGAACTTCAA+AGG + chr3_4:63849353-63849372 None:intergenic 30.0%
AAACAATTGAGACTTCGAAA+GGG - chr3_4:63849362-63849381 Msa0513580:three_prime_UTR 30.0%
TTGGAATGACAATTGAAAAG+AGG - chr3_4:63849531-63849550 Msa0513580:three_prime_UTR 30.0%
GCTAGGATTGATAAAGAATT+TGG - chr3_4:63849800-63849819 Msa0513580:three_prime_UTR 30.0%
TAATCAATATCACTGTCATC+GGG + chr3_4:63849851-63849870 None:intergenic 30.0%
!!! TGATTATGATGATGGTTTTG+AGG - chr3_4:63849943-63849962 Msa0513580:three_prime_UTR 30.0%
TGAGGATATATTTGAAGACT+TGG - chr3_4:63849961-63849980 Msa0513580:three_prime_UTR 30.0%
! GATTTGTTTGACAACAAGAT+TGG - chr3_4:63850016-63850035 Msa0513580:three_prime_UTR 30.0%
! ACAACAAGATTGGAGAATTT+TGG - chr3_4:63850026-63850045 Msa0513580:three_prime_UTR 30.0%
! GAACCATTTTGAATTGGAAA+AGG + chr3_4:63850061-63850080 None:intergenic 30.0%
CTTAACTTTGACAATTACCA+GGG + chr3_4:63850103-63850122 None:intergenic 30.0%
TCTTAACTTTGACAATTACC+AGG + chr3_4:63850104-63850123 None:intergenic 30.0%
TTCATACGTTAAGTAAAGGT+TGG - chr3_4:63850132-63850151 Msa0513580:intron 30.0%
! GTTGGAATGAATTTTTGATC+TGG - chr3_4:63850150-63850169 Msa0513580:intron 30.0%
! TGAATTTTTGATCTGGCAAA+AGG - chr3_4:63850157-63850176 Msa0513580:intron 30.0%
! GAATTTTTGATCTGGCAAAA+GGG - chr3_4:63850158-63850177 Msa0513580:intron 30.0%
AATCATAATATGGTACATGC+AGG + chr3_4:63850190-63850209 None:intergenic 30.0%
GCAATGAGATATAGAACACA+TGG + chr3_4:63848509-63848528 None:intergenic 35.0%
! TATTGCTGACTAAGAAAGGA+TGG + chr3_4:63848608-63848627 None:intergenic 35.0%
CCTTTCTTAGTCAGCAATAA+CGG - chr3_4:63848609-63848628 Msa0513580:three_prime_UTR 35.0%
TGAAAGATAAGCCCTACATT+TGG + chr3_4:63848883-63848902 None:intergenic 35.0%
CAAAAATGGATGGATATCGA+TGG + chr3_4:63848938-63848957 None:intergenic 35.0%
TATAACTTAGTTGCGTTGAG+AGG + chr3_4:63848990-63849009 None:intergenic 35.0%
! GAGATAGCATAAGAAGCTTT+TGG + chr3_4:63849112-63849131 None:intergenic 35.0%
! TTCCTCCTAATTTTAGATCC+CGG - chr3_4:63849186-63849205 Msa0513580:three_prime_UTR 35.0%
TGATCTTGAATTTGTCTGGA+TGG + chr3_4:63849223-63849242 None:intergenic 35.0%
AAGATCATTGACACTTCCTA+TGG - chr3_4:63849236-63849255 Msa0513580:three_prime_UTR 35.0%
CAAACAATTGAGACTTCGAA+AGG - chr3_4:63849361-63849380 Msa0513580:three_prime_UTR 35.0%
AACAATTGAGACTTCGAAAG+GGG - chr3_4:63849363-63849382 Msa0513580:three_prime_UTR 35.0%
GAAAGGGGCTTAATTTAAAG+AGG - chr3_4:63849378-63849397 Msa0513580:three_prime_UTR 35.0%
TTAATTTAAAGAGGCCTCAC+CGG - chr3_4:63849387-63849406 Msa0513580:three_prime_UTR 35.0%
CAAACTTTAGCAAGTAATCC+CGG + chr3_4:63849409-63849428 None:intergenic 35.0%
! TTCTGCTTCAATTGATTCCT+TGG + chr3_4:63849480-63849499 None:intergenic 35.0%
! ATGTTGTGCTGTTATAAGAG+AGG - chr3_4:63849505-63849524 Msa0513580:three_prime_UTR 35.0%
!! TCCAAACTCCTTTCTGAAAT+GGG + chr3_4:63849576-63849595 None:intergenic 35.0%
AATTGAGAGGAATGATTGTG+AGG - chr3_4:63849606-63849625 Msa0513580:three_prime_UTR 35.0%
TGATGAGAAGGGTAACTTAT+TGG - chr3_4:63849694-63849713 Msa0513580:three_prime_UTR 35.0%
TAACTTATTGGAGAAGGATG+AGG - chr3_4:63849706-63849725 Msa0513580:three_prime_UTR 35.0%
AGCCTTACAAGATAAATGGA+TGG - chr3_4:63849733-63849752 Msa0513580:three_prime_UTR 35.0%
GTCCATCCATTTATCTTGTA+AGG + chr3_4:63849738-63849757 None:intergenic 35.0%
! ACAAGATAAATGGATGGACT+TGG - chr3_4:63849739-63849758 Msa0513580:three_prime_UTR 35.0%
GGATTGATAAAGAATTTGGC+AGG - chr3_4:63849804-63849823 Msa0513580:three_prime_UTR 35.0%
! GGACCTTTTCCAATTCAAAA+TGG - chr3_4:63850055-63850074 Msa0513580:three_prime_UTR 35.0%
! CTATCCGAACCATTTTGAAT+TGG + chr3_4:63850067-63850086 None:intergenic 35.0%
GTAAAAGTGAGAAAGTTCAG+AGG - chr3_4:63850297-63850316 Msa0513580:intron 35.0%
AATTAATTGCTATCGAGTGG+TGG + chr3_4:63850350-63850369 None:intergenic 35.0%
GACAATTAATTGCTATCGAG+TGG + chr3_4:63850353-63850372 None:intergenic 35.0%
TATCTTAACATGTGCCTTGA+GGG + chr3_4:63850448-63850467 None:intergenic 35.0%
GCAATGAGATATAGAACACA+TGG + chr3_4:63848509-63848528 None:intergenic 35.0%
! TATTGCTGACTAAGAAAGGA+TGG + chr3_4:63848608-63848627 None:intergenic 35.0%
CCTTTCTTAGTCAGCAATAA+CGG - chr3_4:63848609-63848628 Msa0513580:three_prime_UTR 35.0%
TGAAAGATAAGCCCTACATT+TGG + chr3_4:63848883-63848902 None:intergenic 35.0%
CAAAAATGGATGGATATCGA+TGG + chr3_4:63848938-63848957 None:intergenic 35.0%
TATAACTTAGTTGCGTTGAG+AGG + chr3_4:63848990-63849009 None:intergenic 35.0%
! GAGATAGCATAAGAAGCTTT+TGG + chr3_4:63849112-63849131 None:intergenic 35.0%
! TTCCTCCTAATTTTAGATCC+CGG - chr3_4:63849186-63849205 Msa0513580:three_prime_UTR 35.0%
TGATCTTGAATTTGTCTGGA+TGG + chr3_4:63849223-63849242 None:intergenic 35.0%
AAGATCATTGACACTTCCTA+TGG - chr3_4:63849236-63849255 Msa0513580:three_prime_UTR 35.0%
CAAACAATTGAGACTTCGAA+AGG - chr3_4:63849361-63849380 Msa0513580:three_prime_UTR 35.0%
AACAATTGAGACTTCGAAAG+GGG - chr3_4:63849363-63849382 Msa0513580:three_prime_UTR 35.0%
GAAAGGGGCTTAATTTAAAG+AGG - chr3_4:63849378-63849397 Msa0513580:three_prime_UTR 35.0%
TTAATTTAAAGAGGCCTCAC+CGG - chr3_4:63849387-63849406 Msa0513580:three_prime_UTR 35.0%
CAAACTTTAGCAAGTAATCC+CGG + chr3_4:63849409-63849428 None:intergenic 35.0%
! TTCTGCTTCAATTGATTCCT+TGG + chr3_4:63849480-63849499 None:intergenic 35.0%
! ATGTTGTGCTGTTATAAGAG+AGG - chr3_4:63849505-63849524 Msa0513580:three_prime_UTR 35.0%
!! TCCAAACTCCTTTCTGAAAT+GGG + chr3_4:63849576-63849595 None:intergenic 35.0%
AATTGAGAGGAATGATTGTG+AGG - chr3_4:63849606-63849625 Msa0513580:three_prime_UTR 35.0%
TGATGAGAAGGGTAACTTAT+TGG - chr3_4:63849694-63849713 Msa0513580:three_prime_UTR 35.0%
TAACTTATTGGAGAAGGATG+AGG - chr3_4:63849706-63849725 Msa0513580:three_prime_UTR 35.0%
AGCCTTACAAGATAAATGGA+TGG - chr3_4:63849733-63849752 Msa0513580:three_prime_UTR 35.0%
GTCCATCCATTTATCTTGTA+AGG + chr3_4:63849738-63849757 None:intergenic 35.0%
! ACAAGATAAATGGATGGACT+TGG - chr3_4:63849739-63849758 Msa0513580:three_prime_UTR 35.0%
GGATTGATAAAGAATTTGGC+AGG - chr3_4:63849804-63849823 Msa0513580:three_prime_UTR 35.0%
! GGACCTTTTCCAATTCAAAA+TGG - chr3_4:63850055-63850074 Msa0513580:three_prime_UTR 35.0%
! CTATCCGAACCATTTTGAAT+TGG + chr3_4:63850067-63850086 None:intergenic 35.0%
GTAAAAGTGAGAAAGTTCAG+AGG - chr3_4:63850297-63850316 Msa0513580:intron 35.0%
AATTAATTGCTATCGAGTGG+TGG + chr3_4:63850350-63850369 None:intergenic 35.0%
GACAATTAATTGCTATCGAG+TGG + chr3_4:63850353-63850372 None:intergenic 35.0%
TATCTTAACATGTGCCTTGA+GGG + chr3_4:63850448-63850467 None:intergenic 35.0%
GTACAAGTTAGGGAAGAAGA+AGG + chr3_4:63848246-63848265 None:intergenic 40.0%
! TCTTCTTCCCTAACTTGTAC+AGG - chr3_4:63848246-63848265 Msa0513580:three_prime_UTR 40.0%
GGTGTTTCCTGTACAAGTTA+GGG + chr3_4:63848256-63848275 None:intergenic 40.0%
AGGTGTTTCCTGTACAAGTT+AGG + chr3_4:63848257-63848276 None:intergenic 40.0%
!! CATATATATGGGGAAGTACC+TGG + chr3_4:63848308-63848327 None:intergenic 40.0%
!! CAGGTTCATTGTTTTGTTGC+TGG - chr3_4:63848555-63848574 Msa0513580:three_prime_UTR 40.0%
! CCGTTATTGCTGACTAAGAA+AGG + chr3_4:63848612-63848631 None:intergenic 40.0%
ACGAAGAAAAGTGGAACTGA+GGG + chr3_4:63848646-63848665 None:intergenic 40.0%
TGTTGTTCCACGAAGAAAAG+TGG + chr3_4:63848655-63848674 None:intergenic 40.0%
TTGTCATGAGGAACAGAATC+CGG - chr3_4:63848790-63848809 Msa0513580:three_prime_UTR 40.0%
ATCATAGACAGTAAGGAACG+AGG + chr3_4:63848915-63848934 None:intergenic 40.0%
TCGATGGATCATAGACAGTA+AGG + chr3_4:63848922-63848941 None:intergenic 40.0%
GTCAAACGAACACATAGTTG+AGG + chr3_4:63849014-63849033 None:intergenic 40.0%
! AACCGGGATCTAAAATTAGG+AGG + chr3_4:63849191-63849210 None:intergenic 40.0%
! CACAACCGGGATCTAAAATT+AGG + chr3_4:63849194-63849213 None:intergenic 40.0%
TAATTTAAAGAGGCCTCACC+GGG - chr3_4:63849388-63849407 Msa0513580:three_prime_UTR 40.0%
! TTGTTATAAGGGCACACTTC+TGG + chr3_4:63849440-63849459 None:intergenic 40.0%
TCTCAGCAGGGTTGTTATAA+GGG + chr3_4:63849451-63849470 None:intergenic 40.0%
GCTGTTATAAGAGAGGTTCT+TGG - chr3_4:63849512-63849531 Msa0513580:three_prime_UTR 40.0%
ACCCATTTCAGAAAGGAGTT+TGG - chr3_4:63849572-63849591 Msa0513580:three_prime_UTR 40.0%
! GTCCAAACTCCTTTCTGAAA+TGG + chr3_4:63849577-63849596 None:intergenic 40.0%
GGACTCCCAAATAAATTGAG+AGG - chr3_4:63849593-63849612 Msa0513580:three_prime_UTR 40.0%
ATACGAGTTTGAAAGGGCAA+AGG - chr3_4:63849645-63849664 Msa0513580:three_prime_UTR 40.0%
TACGAGTTTGAAAGGGCAAA+GGG - chr3_4:63849646-63849665 Msa0513580:three_prime_UTR 40.0%
TCTCATCAAATCGCTCTACT+AGG + chr3_4:63849682-63849701 None:intergenic 40.0%
AGTAGAGCGATTTGATGAGA+AGG - chr3_4:63849682-63849701 Msa0513580:three_prime_UTR 40.0%
GTAGAGCGATTTGATGAGAA+GGG - chr3_4:63849683-63849702 Msa0513580:three_prime_UTR 40.0%
GAAGGGTAACTTATTGGAGA+AGG - chr3_4:63849700-63849719 Msa0513580:three_prime_UTR 40.0%
TCTCTCTCTTCTCATTCTCT+TGG + chr3_4:63849774-63849793 None:intergenic 40.0%
AGAGAATGAGAAGAGAGAGA+AGG - chr3_4:63849774-63849793 Msa0513580:three_prime_UTR 40.0%
AATGAGAAGAGAGAGAAGGA+AGG - chr3_4:63849778-63849797 Msa0513580:three_prime_UTR 40.0%
!!! AGACTTGGATTTTGAAGCTG+AGG - chr3_4:63849976-63849995 Msa0513580:three_prime_UTR 40.0%
TGTCAAACAAATCGTTTCCC+AGG + chr3_4:63850009-63850028 None:intergenic 40.0%
! ATTGGAGAATTTTGGACTGC+AGG - chr3_4:63850034-63850053 Msa0513580:three_prime_UTR 40.0%
ATAATATGGTACATGCAGGC+TGG + chr3_4:63850186-63850205 None:intergenic 40.0%
ATGGAGATATTGCTCTATGC+TGG - chr3_4:63850213-63850232 Msa0513580:intron 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - chr3_4:63850431-63850450 Msa0513580:CDS 40.0%
GTATCTTAACATGTGCCTTG+AGG + chr3_4:63850449-63850468 None:intergenic 40.0%
GTACAAGTTAGGGAAGAAGA+AGG + chr3_4:63848246-63848265 None:intergenic 40.0%
! TCTTCTTCCCTAACTTGTAC+AGG - chr3_4:63848246-63848265 Msa0513580:three_prime_UTR 40.0%
GGTGTTTCCTGTACAAGTTA+GGG + chr3_4:63848256-63848275 None:intergenic 40.0%
AGGTGTTTCCTGTACAAGTT+AGG + chr3_4:63848257-63848276 None:intergenic 40.0%
!! CATATATATGGGGAAGTACC+TGG + chr3_4:63848308-63848327 None:intergenic 40.0%
!! CAGGTTCATTGTTTTGTTGC+TGG - chr3_4:63848555-63848574 Msa0513580:three_prime_UTR 40.0%
! CCGTTATTGCTGACTAAGAA+AGG + chr3_4:63848612-63848631 None:intergenic 40.0%
ACGAAGAAAAGTGGAACTGA+GGG + chr3_4:63848646-63848665 None:intergenic 40.0%
TGTTGTTCCACGAAGAAAAG+TGG + chr3_4:63848655-63848674 None:intergenic 40.0%
TTGTCATGAGGAACAGAATC+CGG - chr3_4:63848790-63848809 Msa0513580:three_prime_UTR 40.0%
ATCATAGACAGTAAGGAACG+AGG + chr3_4:63848915-63848934 None:intergenic 40.0%
TCGATGGATCATAGACAGTA+AGG + chr3_4:63848922-63848941 None:intergenic 40.0%
GTCAAACGAACACATAGTTG+AGG + chr3_4:63849014-63849033 None:intergenic 40.0%
! AACCGGGATCTAAAATTAGG+AGG + chr3_4:63849191-63849210 None:intergenic 40.0%
! CACAACCGGGATCTAAAATT+AGG + chr3_4:63849194-63849213 None:intergenic 40.0%
TAATTTAAAGAGGCCTCACC+GGG - chr3_4:63849388-63849407 Msa0513580:three_prime_UTR 40.0%
! TTGTTATAAGGGCACACTTC+TGG + chr3_4:63849440-63849459 None:intergenic 40.0%
TCTCAGCAGGGTTGTTATAA+GGG + chr3_4:63849451-63849470 None:intergenic 40.0%
GCTGTTATAAGAGAGGTTCT+TGG - chr3_4:63849512-63849531 Msa0513580:three_prime_UTR 40.0%
ACCCATTTCAGAAAGGAGTT+TGG - chr3_4:63849572-63849591 Msa0513580:three_prime_UTR 40.0%
! GTCCAAACTCCTTTCTGAAA+TGG + chr3_4:63849577-63849596 None:intergenic 40.0%
GGACTCCCAAATAAATTGAG+AGG - chr3_4:63849593-63849612 Msa0513580:three_prime_UTR 40.0%
ATACGAGTTTGAAAGGGCAA+AGG - chr3_4:63849645-63849664 Msa0513580:three_prime_UTR 40.0%
TACGAGTTTGAAAGGGCAAA+GGG - chr3_4:63849646-63849665 Msa0513580:three_prime_UTR 40.0%
TCTCATCAAATCGCTCTACT+AGG + chr3_4:63849682-63849701 None:intergenic 40.0%
AGTAGAGCGATTTGATGAGA+AGG - chr3_4:63849682-63849701 Msa0513580:three_prime_UTR 40.0%
GTAGAGCGATTTGATGAGAA+GGG - chr3_4:63849683-63849702 Msa0513580:three_prime_UTR 40.0%
GAAGGGTAACTTATTGGAGA+AGG - chr3_4:63849700-63849719 Msa0513580:three_prime_UTR 40.0%
TCTCTCTCTTCTCATTCTCT+TGG + chr3_4:63849774-63849793 None:intergenic 40.0%
AGAGAATGAGAAGAGAGAGA+AGG - chr3_4:63849774-63849793 Msa0513580:three_prime_UTR 40.0%
AATGAGAAGAGAGAGAAGGA+AGG - chr3_4:63849778-63849797 Msa0513580:three_prime_UTR 40.0%
!!! AGACTTGGATTTTGAAGCTG+AGG - chr3_4:63849976-63849995 Msa0513580:three_prime_UTR 40.0%
TGTCAAACAAATCGTTTCCC+AGG + chr3_4:63850009-63850028 None:intergenic 40.0%
! ATTGGAGAATTTTGGACTGC+AGG - chr3_4:63850034-63850053 Msa0513580:three_prime_UTR 40.0%
ATAATATGGTACATGCAGGC+TGG + chr3_4:63850186-63850205 None:intergenic 40.0%
ATGGAGATATTGCTCTATGC+TGG - chr3_4:63850213-63850232 Msa0513580:intron 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - chr3_4:63850431-63850450 Msa0513580:CDS 40.0%
GTATCTTAACATGTGCCTTG+AGG + chr3_4:63850449-63850468 None:intergenic 40.0%
TAGGGAAGAAGAAGGAGTTG+AGG + chr3_4:63848238-63848257 None:intergenic 45.0%
!!! CTCTCTCTTTTTCAACCACC+AGG - chr3_4:63848287-63848306 Msa0513580:three_prime_UTR 45.0%
!! ATATATGGGGAAGTACCTGG+TGG + chr3_4:63848305-63848324 None:intergenic 45.0%
!! CTTAGTCAGCAATAACGGAC+CGG - chr3_4:63848614-63848633 Msa0513580:three_prime_UTR 45.0%
GTGGAACTGAGGGAATTTAC+CGG + chr3_4:63848636-63848655 None:intergenic 45.0%
CACGAAGAAAAGTGGAACTG+AGG + chr3_4:63848647-63848666 None:intergenic 45.0%
!! CTCAGTTCCACTTTTCTTCG+TGG - chr3_4:63848645-63848664 Msa0513580:three_prime_UTR 45.0%
TTGACAGGCATGTTGTCATG+AGG - chr3_4:63848778-63848797 Msa0513580:three_prime_UTR 45.0%
! TTAGTTGCGTTGAGAGGTGT+GGG + chr3_4:63848984-63849003 None:intergenic 45.0%
CAATTCCTCAACTGCAAGTG+CGG + chr3_4:63849048-63849067 None:intergenic 45.0%
CCAACTTTGCCAGTAGTAAC+CGG + chr3_4:63849142-63849161 None:intergenic 45.0%
TTAGGAGGAAGACCAAGATC+AGG + chr3_4:63849176-63849195 None:intergenic 45.0%
TGTATCGTGCGATACCAACT+TGG - chr3_4:63849274-63849293 Msa0513580:three_prime_UTR 45.0%
AGGTAAAGGCTTTGCCAAGT+TGG + chr3_4:63849291-63849310 None:intergenic 45.0%
TTTAGCAAGTAATCCCGGTG+AGG + chr3_4:63849404-63849423 None:intergenic 45.0%
CTCTCAGCAGGGTTGTTATA+AGG + chr3_4:63849452-63849471 None:intergenic 45.0%
TAACAACCCTGCTGAGAGTT+TGG - chr3_4:63849454-63849473 Msa0513580:three_prime_UTR 45.0%
!! CCTTTCTGAAATGGGTCAAG+TGG + chr3_4:63849568-63849587 None:intergenic 45.0%
CCACTTGACCCATTTCAGAA+AGG - chr3_4:63849565-63849584 Msa0513580:three_prime_UTR 45.0%
TTTGAAAGGGCAAAGGGACT+CGG - chr3_4:63849652-63849671 Msa0513580:three_prime_UTR 45.0%
! ATAAATGGATGGACTTGGCG+AGG - chr3_4:63849744-63849763 Msa0513580:three_prime_UTR 45.0%
! TAAATGGATGGACTTGGCGA+GGG - chr3_4:63849745-63849764 Msa0513580:three_prime_UTR 45.0%
TGAAGCTGAGGATTATGACC+TGG - chr3_4:63849988-63850007 Msa0513580:three_prime_UTR 45.0%
GAAGCTGAGGATTATGACCT+GGG - chr3_4:63849989-63850008 Msa0513580:three_prime_UTR 45.0%
ATAGAGAACAGAAGCAACCC+TGG - chr3_4:63850083-63850102 Msa0513580:three_prime_UTR 45.0%
TAGGGAAGAAGAAGGAGTTG+AGG + chr3_4:63848238-63848257 None:intergenic 45.0%
!!! CTCTCTCTTTTTCAACCACC+AGG - chr3_4:63848287-63848306 Msa0513580:three_prime_UTR 45.0%
!! ATATATGGGGAAGTACCTGG+TGG + chr3_4:63848305-63848324 None:intergenic 45.0%
!! CTTAGTCAGCAATAACGGAC+CGG - chr3_4:63848614-63848633 Msa0513580:three_prime_UTR 45.0%
GTGGAACTGAGGGAATTTAC+CGG + chr3_4:63848636-63848655 None:intergenic 45.0%
CACGAAGAAAAGTGGAACTG+AGG + chr3_4:63848647-63848666 None:intergenic 45.0%
!! CTCAGTTCCACTTTTCTTCG+TGG - chr3_4:63848645-63848664 Msa0513580:three_prime_UTR 45.0%
TTGACAGGCATGTTGTCATG+AGG - chr3_4:63848778-63848797 Msa0513580:three_prime_UTR 45.0%
! TTAGTTGCGTTGAGAGGTGT+GGG + chr3_4:63848984-63849003 None:intergenic 45.0%
CAATTCCTCAACTGCAAGTG+CGG + chr3_4:63849048-63849067 None:intergenic 45.0%
CCAACTTTGCCAGTAGTAAC+CGG + chr3_4:63849142-63849161 None:intergenic 45.0%
TTAGGAGGAAGACCAAGATC+AGG + chr3_4:63849176-63849195 None:intergenic 45.0%
TGTATCGTGCGATACCAACT+TGG - chr3_4:63849274-63849293 Msa0513580:three_prime_UTR 45.0%
AGGTAAAGGCTTTGCCAAGT+TGG + chr3_4:63849291-63849310 None:intergenic 45.0%
TTTAGCAAGTAATCCCGGTG+AGG + chr3_4:63849404-63849423 None:intergenic 45.0%
CTCTCAGCAGGGTTGTTATA+AGG + chr3_4:63849452-63849471 None:intergenic 45.0%
TAACAACCCTGCTGAGAGTT+TGG - chr3_4:63849454-63849473 Msa0513580:three_prime_UTR 45.0%
!! CCTTTCTGAAATGGGTCAAG+TGG + chr3_4:63849568-63849587 None:intergenic 45.0%
CCACTTGACCCATTTCAGAA+AGG - chr3_4:63849565-63849584 Msa0513580:three_prime_UTR 45.0%
TTTGAAAGGGCAAAGGGACT+CGG - chr3_4:63849652-63849671 Msa0513580:three_prime_UTR 45.0%
! ATAAATGGATGGACTTGGCG+AGG - chr3_4:63849744-63849763 Msa0513580:three_prime_UTR 45.0%
! TAAATGGATGGACTTGGCGA+GGG - chr3_4:63849745-63849764 Msa0513580:three_prime_UTR 45.0%
TGAAGCTGAGGATTATGACC+TGG - chr3_4:63849988-63850007 Msa0513580:three_prime_UTR 45.0%
GAAGCTGAGGATTATGACCT+GGG - chr3_4:63849989-63850008 Msa0513580:three_prime_UTR 45.0%
ATAGAGAACAGAAGCAACCC+TGG - chr3_4:63850083-63850102 Msa0513580:three_prime_UTR 45.0%
CAACATGCCTGTCAAGAGTG+CGG + chr3_4:63848773-63848792 None:intergenic 50.0%
CTTAGTTGCGTTGAGAGGTG+TGG + chr3_4:63848985-63849004 None:intergenic 50.0%
TTATGCTATCTCCTCACCGC+CGG - chr3_4:63849120-63849139 Msa0513580:three_prime_UTR 50.0%
ACTTTGCCAGTAGTAACCGG+CGG + chr3_4:63849139-63849158 None:intergenic 50.0%
CCGGTTACTACTGGCAAAGT+TGG - chr3_4:63849139-63849158 Msa0513580:three_prime_UTR 50.0%
GTTCACCTTGCTCCTGATCT+TGG - chr3_4:63849161-63849180 Msa0513580:three_prime_UTR 50.0%
GAAGACCAAGATCAGGAGCA+AGG + chr3_4:63849169-63849188 None:intergenic 50.0%
TGGATGGTCATTGCACAACC+GGG + chr3_4:63849207-63849226 None:intergenic 50.0%
CTGGATGGTCATTGCACAAC+CGG + chr3_4:63849208-63849227 None:intergenic 50.0%
AAGCTCAAGTGCACGTCCAT+AGG + chr3_4:63849255-63849274 None:intergenic 50.0%
TCAAGAGAATGGGACTCACG+CGG + chr3_4:63849314-63849333 None:intergenic 50.0%
GAAGAGAGAGAAGGAAGGCT+AGG - chr3_4:63849783-63849802 Msa0513580:three_prime_UTR 50.0%
CAACATGCCTGTCAAGAGTG+CGG + chr3_4:63848773-63848792 None:intergenic 50.0%
CTTAGTTGCGTTGAGAGGTG+TGG + chr3_4:63848985-63849004 None:intergenic 50.0%
TTATGCTATCTCCTCACCGC+CGG - chr3_4:63849120-63849139 Msa0513580:three_prime_UTR 50.0%
ACTTTGCCAGTAGTAACCGG+CGG + chr3_4:63849139-63849158 None:intergenic 50.0%
CCGGTTACTACTGGCAAAGT+TGG - chr3_4:63849139-63849158 Msa0513580:three_prime_UTR 50.0%
GTTCACCTTGCTCCTGATCT+TGG - chr3_4:63849161-63849180 Msa0513580:three_prime_UTR 50.0%
GAAGACCAAGATCAGGAGCA+AGG + chr3_4:63849169-63849188 None:intergenic 50.0%
TGGATGGTCATTGCACAACC+GGG + chr3_4:63849207-63849226 None:intergenic 50.0%
CTGGATGGTCATTGCACAAC+CGG + chr3_4:63849208-63849227 None:intergenic 50.0%
AAGCTCAAGTGCACGTCCAT+AGG + chr3_4:63849255-63849274 None:intergenic 50.0%
TCAAGAGAATGGGACTCACG+CGG + chr3_4:63849314-63849333 None:intergenic 50.0%
GAAGAGAGAGAAGGAAGGCT+AGG - chr3_4:63849783-63849802 Msa0513580:three_prime_UTR 50.0%
TCCCTGCAAGCAGCGAGAAT+CGG - chr3_4:63848208-63848227 Msa0513580:three_prime_UTR 55.0%
TCCGATTCTCGCTGCTTGCA+GGG + chr3_4:63848212-63848231 None:intergenic 55.0%
TTCCGATTCTCGCTGCTTGC+AGG + chr3_4:63848213-63848232 None:intergenic 55.0%
CCTTGGCCAAACTCTCAGCA+GGG + chr3_4:63849463-63849482 None:intergenic 55.0%
TCCTTGGCCAAACTCTCAGC+AGG + chr3_4:63849464-63849483 None:intergenic 55.0%
TCCCTGCAAGCAGCGAGAAT+CGG - chr3_4:63848208-63848227 Msa0513580:three_prime_UTR 55.0%
TCCGATTCTCGCTGCTTGCA+GGG + chr3_4:63848212-63848231 None:intergenic 55.0%
TTCCGATTCTCGCTGCTTGC+AGG + chr3_4:63848213-63848232 None:intergenic 55.0%
CCTTGGCCAAACTCTCAGCA+GGG + chr3_4:63849463-63849482 None:intergenic 55.0%
TCCTTGGCCAAACTCTCAGC+AGG + chr3_4:63849464-63849483 None:intergenic 55.0%
TTCGCGACCGCACTCTTGAC+AGG - chr3_4:63848763-63848782 Msa0513580:three_prime_UTR 60.0%
! TGAGAGGTGTGGGTGGCCAT+GGG + chr3_4:63848974-63848993 None:intergenic 60.0%
! TTGAGAGGTGTGGGTGGCCA+TGG + chr3_4:63848975-63848994 None:intergenic 60.0%
! GTTGCGTTGAGAGGTGTGGG+TGG + chr3_4:63848981-63849000 None:intergenic 60.0%
TGCAGCCGCACTTGCAGTTG+AGG - chr3_4:63849040-63849059 Msa0513580:three_prime_UTR 60.0%
! TCCTCACCGCCGGTTACTAC+TGG - chr3_4:63849130-63849149 Msa0513580:three_prime_UTR 60.0%
TGGGACTCACGCGGAGGTAA+AGG + chr3_4:63849305-63849324 None:intergenic 60.0%
AGAGAATGGGACTCACGCGG+AGG + chr3_4:63849311-63849330 None:intergenic 60.0%
CCCTGCTGAGAGTTTGGCCA+AGG - chr3_4:63849460-63849479 Msa0513580:three_prime_UTR 60.0%
TTCGCGACCGCACTCTTGAC+AGG - chr3_4:63848763-63848782 Msa0513580:three_prime_UTR 60.0%
! TGAGAGGTGTGGGTGGCCAT+GGG + chr3_4:63848974-63848993 None:intergenic 60.0%
! TTGAGAGGTGTGGGTGGCCA+TGG + chr3_4:63848975-63848994 None:intergenic 60.0%
! GTTGCGTTGAGAGGTGTGGG+TGG + chr3_4:63848981-63849000 None:intergenic 60.0%
TGCAGCCGCACTTGCAGTTG+AGG - chr3_4:63849040-63849059 Msa0513580:three_prime_UTR 60.0%
! TCCTCACCGCCGGTTACTAC+TGG - chr3_4:63849130-63849149 Msa0513580:three_prime_UTR 60.0%
TGGGACTCACGCGGAGGTAA+AGG + chr3_4:63849305-63849324 None:intergenic 60.0%
AGAGAATGGGACTCACGCGG+AGG + chr3_4:63849311-63849330 None:intergenic 60.0%
CCCTGCTGAGAGTTTGGCCA+AGG - chr3_4:63849460-63849479 Msa0513580:three_prime_UTR 60.0%
ACTGCAAGTGCGGCTGCAGC+TGG + chr3_4:63849038-63849057 None:intergenic 65.0%
GCCAGTAGTAACCGGCGGTG+AGG + chr3_4:63849134-63849153 None:intergenic 65.0%
ACTGCAAGTGCGGCTGCAGC+TGG + chr3_4:63849038-63849057 None:intergenic 65.0%
GCCAGTAGTAACCGGCGGTG+AGG + chr3_4:63849134-63849153 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 63848138 63850548 63848138 ID=Msa0513580;Name=Msa0513580
chr3_4 mRNA 63848138 63850548 63848138 ID=Msa0513580-mRNA-1;Parent=Msa0513580;Name=Msa0513580-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.5|1|0|0|2|1967|64
chr3_4 exon 63848138 63850128 63848138 ID=Msa0513580-mRNA-1:exon:16045;Parent=Msa0513580-mRNA-1
chr3_4 exon 63850378 63850548 63850378 ID=Msa0513580-mRNA-1:exon:16044;Parent=Msa0513580-mRNA-1
chr3_4 CDS 63850378 63850548 63850378 ID=Msa0513580-mRNA-1:cds;Parent=Msa0513580-mRNA-1
chr3_4 CDS 63850105 63850128 63850105 ID=Msa0513580-mRNA-1:cds;Parent=Msa0513580-mRNA-1
chr3_4 three_prime_UTR 63848138 63850104 63848138 ID=Msa0513580-mRNA-1:three_prime_utr;Parent=Msa0513580-mRNA-1
Gene Sequence

>Msa0513580

ACACCACAAGAAAAAAAAAACAGTCTCAATCAAAAACAAACTCAGTTAGCGAATAAACAAATTCAACTCTTCCCTGCAAGCAGCGAGAATCGGAAATCCTCAACTCCTTCTTCTTCCCTAACTTGTACAGGAAACACCTTAACAAATTTCTCTCTCTTTTTCAACCACCAGGTTCATTGTTTTGTTGCTGGTTGA

Protein sequence

>Msa0513580

TPQEKKNSLNQKQTQLANKQIQLFPASSENRKSSTPSSSLTCTGNTLTNFSLFFNHQVHCFVAG*