AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0133140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133140 MtrunA17_Chr1g0202411 95.431 197 6 1 1 197 21 214 1.05e-132 374
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133140 AT1G28140.1 67.901 162 45 2 43 197 31 192 9.33e-64 199

Find 62 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGATGAGGTTATTATTA+TGG 0.190255 1_3:+64446882 Msa0133140:five_prime_UTR
CAAGTTTATAACGGCGTTTA+TGG 0.193049 1_3:+64447121 Msa0133140:CDS
AGCGCACTCTGCAAGCATTA+TGG 0.246210 1_3:+64448041 Msa0133140:CDS
TTATGGGGCCTCGGGGTTCT+TGG 0.285137 1_3:+64448058 Msa0133140:CDS
CGTCATTGGGTCAGGTGGGT+TGG 0.319339 1_3:+64447976 Msa0133140:CDS
GACAGCGAAAATCAGAAATA+TGG 0.353072 1_3:+64446928 Msa0133140:exon
GTCATTGGGTCAGGTGGGTT+GGG 0.353231 1_3:+64447977 Msa0133140:CDS
CGCCGTTATAAACTTGTTGT+TGG 0.370560 1_3:-64447114 None:intergenic
GCGCACTCTGCAAGCATTAT+GGG 0.374010 1_3:+64448042 Msa0133140:CDS
CCATCAGCTGTCTGGCTTGT+CGG 0.381851 1_3:+64448151 Msa0133140:CDS
CAAGTTTATGTCTTGGCGGT+CGG 0.386160 1_3:+64447035 Msa0133140:CDS
ACTTAGGTCACCAGGCAAAT+AGG 0.386554 1_3:-64447921 None:intergenic
GCATCTGCCGCCTATTTGCC+TGG 0.386813 1_3:+64447911 Msa0133140:CDS
TGCAAGCATTATGGGGCCTC+GGG 0.396833 1_3:+64448050 Msa0133140:CDS
CTGCAAGCATTATGGGGCCT+CGG 0.396844 1_3:+64448049 Msa0133140:CDS
AAGTTTATGTCTTGGCGGTC+GGG 0.403259 1_3:+64447036 Msa0133140:CDS
ACCGACCCAATTCTGATTCT+CGG 0.410553 1_3:-64447067 None:intergenic
CTACATCACCCTTGCCCAAC+CGG 0.413007 1_3:+64448093 Msa0133140:CDS
ATCTTCGGCTTCAACGGTCC+AGG 0.413922 1_3:-64447146 None:intergenic
CCTTCTTCAAGTTTATGTCT+TGG 0.419897 1_3:+64447028 Msa0133140:CDS
CCTTCTCCGAGAATCAGAAT+TGG 0.420118 1_3:+64447061 Msa0133140:CDS
TTGATAACCCATCAGCTGTC+TGG 0.422836 1_3:+64448143 Msa0133140:CDS
GAGTACCTCTTTGACATCTT+CGG 0.430335 1_3:-64447161 None:intergenic
AATTCGAACAAGATTAGAAA+TGG 0.436512 1_3:-64447005 None:intergenic
ATAACGGCGTTTATGGCCCC+TGG 0.459012 1_3:+64447128 Msa0133140:CDS
TCAAAACACAAGATTTGATC+AGG 0.461775 1_3:+64446827 None:intergenic
CAGGTTATATCGTACCGATC+AGG 0.483142 1_3:+64447854 Msa0133140:intron
TTTGACATCTTCGGCTTCAA+CGG 0.489022 1_3:-64447152 None:intergenic
TCTTCAAGTTTATGTCTTGG+CGG 0.493287 1_3:+64447031 Msa0133140:CDS
CTTCTCCGAGAATCAGAATT+GGG 0.500907 1_3:+64447062 Msa0133140:CDS
TCTTCGGCTTCAACGGTCCA+GGG 0.516093 1_3:-64447145 None:intergenic
TTTGCTTGAGCGTATCACTT+AGG 0.523274 1_3:-64447937 None:intergenic
CCGACAAGCCAGACAGCTGA+TGG 0.523521 1_3:-64448151 None:intergenic
ATCAGAAATATGGCGTTACA+AGG 0.523943 1_3:+64446938 Msa0133140:exon
AACCAACAACAAGTTTATAA+CGG 0.529478 1_3:+64447112 Msa0133140:CDS
TGGCGGTTTCAATATCTGTA+AGG 0.539090 1_3:+64446978 Msa0133140:CDS
TTTACGTCATTGGGTCAGGT+GGG 0.540791 1_3:+64447972 Msa0133140:CDS
CGGTTGGGCAAGGGTGATGT+AGG 0.542884 1_3:-64448092 None:intergenic
TTTATTAGCCGGTTGGGCAA+GGG 0.546853 1_3:-64448101 None:intergenic
TCGGTACGGTGTAAAGCGGC+GGG 0.552551 1_3:+64447085 Msa0133140:CDS
CAATTCTGATTCTCGGAGAA+GGG 0.554524 1_3:-64447060 None:intergenic
CCAAGACATAAACTTGAAGA+AGG 0.556172 1_3:-64447028 None:intergenic
CCAATTCTGATTCTCGGAGA+AGG 0.562090 1_3:-64447061 None:intergenic
AGCGTATCACTTAGGTCACC+AGG 0.562406 1_3:-64447929 None:intergenic
GTCGGTACGGTGTAAAGCGG+CGG 0.563056 1_3:+64447084 Msa0133140:CDS
TATATCGTACCGATCAGGAT+TGG 0.575057 1_3:+64447859 Msa0133140:CDS
CGCACTCTGCAAGCATTATG+GGG 0.582516 1_3:+64448043 Msa0133140:CDS
CGAACAAGATTAGAAATGGA+AGG 0.595756 1_3:-64447001 None:intergenic
GAATCAGAATTGGGTCGGTA+CGG 0.606759 1_3:+64447071 Msa0133140:CDS
AGGATTAAGTACTGTTTCTG+TGG 0.608660 1_3:+64446958 Msa0133140:CDS
TCCGAGAATCAGAATTGGGT+CGG 0.617946 1_3:+64447066 Msa0133140:CDS
ATTAAGTACTGTTTCTGTGG+CGG 0.624479 1_3:+64446961 Msa0133140:CDS
ATCAGGATTGGTAACAGCTG+CGG 0.633244 1_3:+64447871 Msa0133140:CDS
CGACAAGCCAGACAGCTGAT+GGG 0.633627 1_3:-64448150 None:intergenic
CTTCGGCTTCAACGGTCCAG+GGG 0.636756 1_3:-64447144 None:intergenic
AAACACAAGATTTGATCAGG+TGG 0.637760 1_3:+64446830 None:intergenic
CAGCTGTTACCAATCCTGAT+CGG 0.643027 1_3:-64447868 None:intergenic
TGAAGCCGAAGATGTCAAAG+AGG 0.661714 1_3:+64447156 Msa0133140:CDS
TGGGTCGGTACGGTGTAAAG+CGG 0.668122 1_3:+64447081 Msa0133140:CDS
TAGGTCACCAGGCAAATAGG+CGG 0.693733 1_3:-64447918 None:intergenic
GCAAGCATTATGGGGCCTCG+GGG 0.704748 1_3:+64448051 Msa0133140:CDS
CAGCTGATCCAAGAACCCCG+AGG 0.791341 1_3:-64448066 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATTATTGACAACTTT+AGG + chr1_3:64447451-64447470 Msa0133140:intron 15.0%
!! TAAATATAAATATGACCAAT+GGG - chr1_3:64447532-64447551 None:intergenic 15.0%
!! ATAAATATAAATATGACCAA+TGG - chr1_3:64447533-64447552 None:intergenic 15.0%
!! TTATATTTATAAGAGACATT+TGG + chr1_3:64447543-64447562 Msa0133140:intron 15.0%
!! AATTAATTATTGACAACTTT+AGG + chr1_3:64447451-64447470 Msa0133140:intron 15.0%
!! TAAATATAAATATGACCAAT+GGG - chr1_3:64447532-64447551 None:intergenic 15.0%
!! ATAAATATAAATATGACCAA+TGG - chr1_3:64447533-64447552 None:intergenic 15.0%
!! TTATATTTATAAGAGACATT+TGG + chr1_3:64447543-64447562 Msa0133140:intron 15.0%
!! AAATGATGAGGTTATTATTA+TGG + chr1_3:64446882-64446901 Msa0133140:five_prime_UTR 20.0%
!!! AAATTGTTATTACTCCATAA+GGG - chr1_3:64447377-64447396 None:intergenic 20.0%
!! AATATACCTGATTCAAAATT+TGG + chr1_3:64447579-64447598 Msa0133140:intron 20.0%
!!! ATTGATTTTTTTTACGTCAT+TGG + chr1_3:64447962-64447981 Msa0133140:CDS 20.0%
!!! TTGATTTTTTTTACGTCATT+GGG + chr1_3:64447963-64447982 Msa0133140:CDS 20.0%
!!! TGTATTAAAGTTTTATTAGC+CGG - chr1_3:64448115-64448134 None:intergenic 20.0%
!!! NNNNNNTTTAATTTGGATGC+AGG + chr1_3:64448341-64448360 Msa0133140:intron 20.0%
!! AAATGATGAGGTTATTATTA+TGG + chr1_3:64446882-64446901 Msa0133140:five_prime_UTR 20.0%
!!! AAATTGTTATTACTCCATAA+GGG - chr1_3:64447377-64447396 None:intergenic 20.0%
!! AATATACCTGATTCAAAATT+TGG + chr1_3:64447579-64447598 Msa0133140:intron 20.0%
!!! ATTGATTTTTTTTACGTCAT+TGG + chr1_3:64447962-64447981 Msa0133140:CDS 20.0%
!!! TTGATTTTTTTTACGTCATT+GGG + chr1_3:64447963-64447982 Msa0133140:CDS 20.0%
!!! TGTATTAAAGTTTTATTAGC+CGG - chr1_3:64448115-64448134 None:intergenic 20.0%
!!! NNNNNNTTTAATTTGGATGC+AGG + chr1_3:64448341-64448360 Msa0133140:intron 20.0%
! AATTCGAACAAGATTAGAAA+TGG - chr1_3:64447008-64447027 None:intergenic 25.0%
! AACCAACAACAAGTTTATAA+CGG + chr1_3:64447112-64447131 Msa0133140:CDS 25.0%
! CTTATAACAGAAATTGATTG+AGG - chr1_3:64447194-64447213 None:intergenic 25.0%
! AACTGAATTTAGAAAACAGA+AGG - chr1_3:64447279-64447298 None:intergenic 25.0%
!! CAAATTGTTATTACTCCATA+AGG - chr1_3:64447378-64447397 None:intergenic 25.0%
! AATTCGAACAAGATTAGAAA+TGG - chr1_3:64447008-64447027 None:intergenic 25.0%
! AACCAACAACAAGTTTATAA+CGG + chr1_3:64447112-64447131 Msa0133140:CDS 25.0%
! CTTATAACAGAAATTGATTG+AGG - chr1_3:64447194-64447213 None:intergenic 25.0%
! AACTGAATTTAGAAAACAGA+AGG - chr1_3:64447279-64447298 None:intergenic 25.0%
!! CAAATTGTTATTACTCCATA+AGG - chr1_3:64447378-64447397 None:intergenic 25.0%
!! CCTCATCATTTTTATTCTTG+TGG - chr1_3:64446873-64446892 None:intergenic 30.0%
CCACAAGAATAAAAATGATG+AGG + chr1_3:64446870-64446889 Msa0133140:five_prime_UTR 30.0%
ATACTAACTAACACGTGATA+AGG - chr1_3:64447224-64447243 None:intergenic 30.0%
! ACGTGTTAGTTAGTATTGAA+AGG + chr1_3:64447228-64447247 Msa0133140:intron 30.0%
GGGAAAAGGAATTACAATAA+TGG - chr1_3:64447357-64447376 None:intergenic 30.0%
! TTGTAATTCCTTTTCCCTTA+TGG + chr1_3:64447360-64447379 Msa0133140:intron 30.0%
TTATTACTCCATAAGGGAAA+AGG - chr1_3:64447371-64447390 None:intergenic 30.0%
CTCAAGTGTCTCTTAAAAAT+AGG + chr1_3:64447625-64447644 Msa0133140:intron 30.0%
GTGTCTCTTAAAAATAGGAT+CGG + chr1_3:64447630-64447649 Msa0133140:intron 30.0%
TCTTAAAAATAGGATCGGAT+CGG + chr1_3:64447635-64447654 Msa0133140:intron 30.0%
TAGTTAGCATTGCATACATA+GGG - chr1_3:64447825-64447844 None:intergenic 30.0%
ATAGTTAGCATTGCATACAT+AGG - chr1_3:64447826-64447845 None:intergenic 30.0%
!!! TAAAGTTTTATTAGCCGGTT+GGG - chr1_3:64448110-64448129 None:intergenic 30.0%
!!! TTAAAGTTTTATTAGCCGGT+TGG - chr1_3:64448111-64448130 None:intergenic 30.0%
!! CCTCATCATTTTTATTCTTG+TGG - chr1_3:64446873-64446892 None:intergenic 30.0%
CCACAAGAATAAAAATGATG+AGG + chr1_3:64446870-64446889 Msa0133140:five_prime_UTR 30.0%
ATACTAACTAACACGTGATA+AGG - chr1_3:64447224-64447243 None:intergenic 30.0%
! ACGTGTTAGTTAGTATTGAA+AGG + chr1_3:64447228-64447247 Msa0133140:intron 30.0%
GGGAAAAGGAATTACAATAA+TGG - chr1_3:64447357-64447376 None:intergenic 30.0%
! TTGTAATTCCTTTTCCCTTA+TGG + chr1_3:64447360-64447379 Msa0133140:intron 30.0%
TTATTACTCCATAAGGGAAA+AGG - chr1_3:64447371-64447390 None:intergenic 30.0%
CTCAAGTGTCTCTTAAAAAT+AGG + chr1_3:64447625-64447644 Msa0133140:intron 30.0%
GTGTCTCTTAAAAATAGGAT+CGG + chr1_3:64447630-64447649 Msa0133140:intron 30.0%
TCTTAAAAATAGGATCGGAT+CGG + chr1_3:64447635-64447654 Msa0133140:intron 30.0%
TAGTTAGCATTGCATACATA+GGG - chr1_3:64447825-64447844 None:intergenic 30.0%
ATAGTTAGCATTGCATACAT+AGG - chr1_3:64447826-64447845 None:intergenic 30.0%
!!! TAAAGTTTTATTAGCCGGTT+GGG - chr1_3:64448110-64448129 None:intergenic 30.0%
!!! TTAAAGTTTTATTAGCCGGT+TGG - chr1_3:64448111-64448130 None:intergenic 30.0%
GACAGCGAAAATCAGAAATA+TGG + chr1_3:64446928-64446947 Msa0133140:exon 35.0%
ATCAGAAATATGGCGTTACA+AGG + chr1_3:64446938-64446957 Msa0133140:exon 35.0%
!! AGGATTAAGTACTGTTTCTG+TGG + chr1_3:64446958-64446977 Msa0133140:CDS 35.0%
!! ATTAAGTACTGTTTCTGTGG+CGG + chr1_3:64446961-64446980 Msa0133140:CDS 35.0%
CGAACAAGATTAGAAATGGA+AGG - chr1_3:64447004-64447023 None:intergenic 35.0%
CCAAGACATAAACTTGAAGA+AGG - chr1_3:64447031-64447050 None:intergenic 35.0%
! CCTTCTTCAAGTTTATGTCT+TGG + chr1_3:64447028-64447047 Msa0133140:CDS 35.0%
! TCTTCAAGTTTATGTCTTGG+CGG + chr1_3:64447031-64447050 Msa0133140:CDS 35.0%
CAAGTTTATAACGGCGTTTA+TGG + chr1_3:64447121-64447140 Msa0133140:CDS 35.0%
ACAGAAATTGATTGAGGAGA+AGG - chr1_3:64447188-64447207 None:intergenic 35.0%
TAAATATGACCAATGGGAGT+AGG - chr1_3:64447526-64447545 None:intergenic 35.0%
! TCTGGTCCAAATTTTGAATC+AGG - chr1_3:64447588-64447607 None:intergenic 35.0%
!! GTCACAAAAGTTGATGTATC+TGG - chr1_3:64447606-64447625 None:intergenic 35.0%
! CTTTTAAGCTGCAACTGTAT+AGG - chr1_3:64447791-64447810 None:intergenic 35.0%
! AGTTGCAGCTTAAAAGCTTT+TGG + chr1_3:64447795-64447814 Msa0133140:intron 35.0%
!!! TTTTTTTACGTCATTGGGTC+AGG + chr1_3:64447968-64447987 Msa0133140:CDS 35.0%
!! TTTGACAGGACTTGTTTTCA+AGG + chr1_3:64448189-64448208 Msa0133140:CDS 35.0%
GACAGCGAAAATCAGAAATA+TGG + chr1_3:64446928-64446947 Msa0133140:exon 35.0%
ATCAGAAATATGGCGTTACA+AGG + chr1_3:64446938-64446957 Msa0133140:exon 35.0%
!! AGGATTAAGTACTGTTTCTG+TGG + chr1_3:64446958-64446977 Msa0133140:CDS 35.0%
!! ATTAAGTACTGTTTCTGTGG+CGG + chr1_3:64446961-64446980 Msa0133140:CDS 35.0%
CGAACAAGATTAGAAATGGA+AGG - chr1_3:64447004-64447023 None:intergenic 35.0%
CCAAGACATAAACTTGAAGA+AGG - chr1_3:64447031-64447050 None:intergenic 35.0%
! CCTTCTTCAAGTTTATGTCT+TGG + chr1_3:64447028-64447047 Msa0133140:CDS 35.0%
! TCTTCAAGTTTATGTCTTGG+CGG + chr1_3:64447031-64447050 Msa0133140:CDS 35.0%
CAAGTTTATAACGGCGTTTA+TGG + chr1_3:64447121-64447140 Msa0133140:CDS 35.0%
ACAGAAATTGATTGAGGAGA+AGG - chr1_3:64447188-64447207 None:intergenic 35.0%
TAAATATGACCAATGGGAGT+AGG - chr1_3:64447526-64447545 None:intergenic 35.0%
! TCTGGTCCAAATTTTGAATC+AGG - chr1_3:64447588-64447607 None:intergenic 35.0%
!! GTCACAAAAGTTGATGTATC+TGG - chr1_3:64447606-64447625 None:intergenic 35.0%
! CTTTTAAGCTGCAACTGTAT+AGG - chr1_3:64447791-64447810 None:intergenic 35.0%
! AGTTGCAGCTTAAAAGCTTT+TGG + chr1_3:64447795-64447814 Msa0133140:intron 35.0%
!!! TTTTTTTACGTCATTGGGTC+AGG + chr1_3:64447968-64447987 Msa0133140:CDS 35.0%
!! TTTGACAGGACTTGTTTTCA+AGG + chr1_3:64448189-64448208 Msa0133140:CDS 35.0%
! ATTTCTGATTTTCGCTGTCG+AGG - chr1_3:64446927-64446946 None:intergenic 40.0%
TGGCGGTTTCAATATCTGTA+AGG + chr1_3:64446978-64446997 Msa0133140:CDS 40.0%
CAATTCTGATTCTCGGAGAA+GGG - chr1_3:64447063-64447082 None:intergenic 40.0%
CTTCTCCGAGAATCAGAATT+GGG + chr1_3:64447062-64447081 Msa0133140:CDS 40.0%
!! CGCCGTTATAAACTTGTTGT+TGG - chr1_3:64447117-64447136 None:intergenic 40.0%
TTTGACATCTTCGGCTTCAA+CGG - chr1_3:64447155-64447174 None:intergenic 40.0%
GAGTACCTCTTTGACATCTT+CGG - chr1_3:64447164-64447183 None:intergenic 40.0%
TCAACTATACCTACTCCCAT+TGG + chr1_3:64447514-64447533 Msa0133140:intron 40.0%
! TATATCGTACCGATCAGGAT+TGG + chr1_3:64447859-64447878 Msa0133140:CDS 40.0%
TTTGCTTGAGCGTATCACTT+AGG - chr1_3:64447940-64447959 None:intergenic 40.0%
!! ACAGGACTTGTTTTCAAGGA+AGG + chr1_3:64448193-64448212 Msa0133140:CDS 40.0%
! ATTTCTGATTTTCGCTGTCG+AGG - chr1_3:64446927-64446946 None:intergenic 40.0%
TGGCGGTTTCAATATCTGTA+AGG + chr1_3:64446978-64446997 Msa0133140:CDS 40.0%
CAATTCTGATTCTCGGAGAA+GGG - chr1_3:64447063-64447082 None:intergenic 40.0%
CTTCTCCGAGAATCAGAATT+GGG + chr1_3:64447062-64447081 Msa0133140:CDS 40.0%
!! CGCCGTTATAAACTTGTTGT+TGG - chr1_3:64447117-64447136 None:intergenic 40.0%
TTTGACATCTTCGGCTTCAA+CGG - chr1_3:64447155-64447174 None:intergenic 40.0%
GAGTACCTCTTTGACATCTT+CGG - chr1_3:64447164-64447183 None:intergenic 40.0%
TCAACTATACCTACTCCCAT+TGG + chr1_3:64447514-64447533 Msa0133140:intron 40.0%
! TATATCGTACCGATCAGGAT+TGG + chr1_3:64447859-64447878 Msa0133140:CDS 40.0%
TTTGCTTGAGCGTATCACTT+AGG - chr1_3:64447940-64447959 None:intergenic 40.0%
!! ACAGGACTTGTTTTCAAGGA+AGG + chr1_3:64448193-64448212 Msa0133140:CDS 40.0%
CAAGTTTATGTCTTGGCGGT+CGG + chr1_3:64447035-64447054 Msa0133140:CDS 45.0%
AAGTTTATGTCTTGGCGGTC+GGG + chr1_3:64447036-64447055 Msa0133140:CDS 45.0%
CCAATTCTGATTCTCGGAGA+AGG - chr1_3:64447064-64447083 None:intergenic 45.0%
CCTTCTCCGAGAATCAGAAT+TGG + chr1_3:64447061-64447080 Msa0133140:CDS 45.0%
TCCGAGAATCAGAATTGGGT+CGG + chr1_3:64447066-64447085 Msa0133140:CDS 45.0%
ACCGACCCAATTCTGATTCT+CGG - chr1_3:64447070-64447089 None:intergenic 45.0%
GAATCAGAATTGGGTCGGTA+CGG + chr1_3:64447071-64447090 Msa0133140:CDS 45.0%
TGAAGCCGAAGATGTCAAAG+AGG + chr1_3:64447156-64447175 Msa0133140:CDS 45.0%
TGACTCTACTCGAATTGGGT+CGG - chr1_3:64447408-64447427 None:intergenic 45.0%
AGCCTGACTCTACTCGAATT+GGG - chr1_3:64447412-64447431 None:intergenic 45.0%
TAGCCTGACTCTACTCGAAT+TGG - chr1_3:64447413-64447432 None:intergenic 45.0%
ACACACTACACTGTGTTTGC+AGG - chr1_3:64447719-64447738 None:intergenic 45.0%
TGCAATGCTAACTATGCCCA+TGG + chr1_3:64447831-64447850 Msa0133140:intron 45.0%
GGTACGATATAACCTGCCAT+GGG - chr1_3:64447850-64447869 None:intergenic 45.0%
! CAGGTTATATCGTACCGATC+AGG + chr1_3:64447854-64447873 Msa0133140:intron 45.0%
CAGCTGTTACCAATCCTGAT+CGG - chr1_3:64447871-64447890 None:intergenic 45.0%
! ATCAGGATTGGTAACAGCTG+CGG + chr1_3:64447871-64447890 Msa0133140:CDS 45.0%
ACTTAGGTCACCAGGCAAAT+AGG - chr1_3:64447924-64447943 None:intergenic 45.0%
! TTTTACGTCATTGGGTCAGG+TGG + chr1_3:64447971-64447990 Msa0133140:CDS 45.0%
TTTACGTCATTGGGTCAGGT+GGG + chr1_3:64447972-64447991 Msa0133140:CDS 45.0%
TTTATTAGCCGGTTGGGCAA+GGG - chr1_3:64448104-64448123 None:intergenic 45.0%
! TTTTATTAGCCGGTTGGGCA+AGG - chr1_3:64448105-64448124 None:intergenic 45.0%
! TTGATAACCCATCAGCTGTC+TGG + chr1_3:64448143-64448162 Msa0133140:CDS 45.0%
CCTGTCAAAGCAGCAAAAAG+AGG - chr1_3:64448178-64448197 None:intergenic 45.0%
!!! CCTCTTTTTGCTGCTTTGAC+AGG + chr1_3:64448175-64448194 Msa0133140:CDS 45.0%
CAAGTTTATGTCTTGGCGGT+CGG + chr1_3:64447035-64447054 Msa0133140:CDS 45.0%
AAGTTTATGTCTTGGCGGTC+GGG + chr1_3:64447036-64447055 Msa0133140:CDS 45.0%
CCAATTCTGATTCTCGGAGA+AGG - chr1_3:64447064-64447083 None:intergenic 45.0%
CCTTCTCCGAGAATCAGAAT+TGG + chr1_3:64447061-64447080 Msa0133140:CDS 45.0%
TCCGAGAATCAGAATTGGGT+CGG + chr1_3:64447066-64447085 Msa0133140:CDS 45.0%
ACCGACCCAATTCTGATTCT+CGG - chr1_3:64447070-64447089 None:intergenic 45.0%
GAATCAGAATTGGGTCGGTA+CGG + chr1_3:64447071-64447090 Msa0133140:CDS 45.0%
TGAAGCCGAAGATGTCAAAG+AGG + chr1_3:64447156-64447175 Msa0133140:CDS 45.0%
TGACTCTACTCGAATTGGGT+CGG - chr1_3:64447408-64447427 None:intergenic 45.0%
AGCCTGACTCTACTCGAATT+GGG - chr1_3:64447412-64447431 None:intergenic 45.0%
TAGCCTGACTCTACTCGAAT+TGG - chr1_3:64447413-64447432 None:intergenic 45.0%
ACACACTACACTGTGTTTGC+AGG - chr1_3:64447719-64447738 None:intergenic 45.0%
TGCAATGCTAACTATGCCCA+TGG + chr1_3:64447831-64447850 Msa0133140:intron 45.0%
GGTACGATATAACCTGCCAT+GGG - chr1_3:64447850-64447869 None:intergenic 45.0%
! CAGGTTATATCGTACCGATC+AGG + chr1_3:64447854-64447873 Msa0133140:intron 45.0%
CAGCTGTTACCAATCCTGAT+CGG - chr1_3:64447871-64447890 None:intergenic 45.0%
! ATCAGGATTGGTAACAGCTG+CGG + chr1_3:64447871-64447890 Msa0133140:CDS 45.0%
ACTTAGGTCACCAGGCAAAT+AGG - chr1_3:64447924-64447943 None:intergenic 45.0%
! TTTTACGTCATTGGGTCAGG+TGG + chr1_3:64447971-64447990 Msa0133140:CDS 45.0%
TTTACGTCATTGGGTCAGGT+GGG + chr1_3:64447972-64447991 Msa0133140:CDS 45.0%
TTTATTAGCCGGTTGGGCAA+GGG - chr1_3:64448104-64448123 None:intergenic 45.0%
! TTTTATTAGCCGGTTGGGCA+AGG - chr1_3:64448105-64448124 None:intergenic 45.0%
! TTGATAACCCATCAGCTGTC+TGG + chr1_3:64448143-64448162 Msa0133140:CDS 45.0%
CCTGTCAAAGCAGCAAAAAG+AGG - chr1_3:64448178-64448197 None:intergenic 45.0%
!!! CCTCTTTTTGCTGCTTTGAC+AGG + chr1_3:64448175-64448194 Msa0133140:CDS 45.0%
!! NNNNNNNNAATAAAAATAGA+TGG - chr1_3:64448235-64448254 None:intergenic 5.0%
!! NNNNNNNNAATAAAAATAGA+TGG - chr1_3:64448235-64448254 None:intergenic 5.0%
GACTCTACTCGAATTGGGTC+GGG - chr1_3:64447407-64447426 None:intergenic 50.0%
GACCCAATTCGAGTAGAGTC+AGG + chr1_3:64447407-64447426 Msa0133140:intron 50.0%
ATGCTAACTATGCCCATGGC+AGG + chr1_3:64447835-64447854 Msa0133140:intron 50.0%
CGGTACGATATAACCTGCCA+TGG - chr1_3:64447851-64447870 None:intergenic 50.0%
TAGGTCACCAGGCAAATAGG+CGG - chr1_3:64447921-64447940 None:intergenic 50.0%
AGCGTATCACTTAGGTCACC+AGG - chr1_3:64447932-64447951 None:intergenic 50.0%
AGCGCACTCTGCAAGCATTA+TGG + chr1_3:64448041-64448060 Msa0133140:CDS 50.0%
GCGCACTCTGCAAGCATTAT+GGG + chr1_3:64448042-64448061 Msa0133140:CDS 50.0%
CGCACTCTGCAAGCATTATG+GGG + chr1_3:64448043-64448062 Msa0133140:CDS 50.0%
GACTCTACTCGAATTGGGTC+GGG - chr1_3:64447407-64447426 None:intergenic 50.0%
GACCCAATTCGAGTAGAGTC+AGG + chr1_3:64447407-64447426 Msa0133140:intron 50.0%
ATGCTAACTATGCCCATGGC+AGG + chr1_3:64447835-64447854 Msa0133140:intron 50.0%
CGGTACGATATAACCTGCCA+TGG - chr1_3:64447851-64447870 None:intergenic 50.0%
TAGGTCACCAGGCAAATAGG+CGG - chr1_3:64447921-64447940 None:intergenic 50.0%
AGCGTATCACTTAGGTCACC+AGG - chr1_3:64447932-64447951 None:intergenic 50.0%
AGCGCACTCTGCAAGCATTA+TGG + chr1_3:64448041-64448060 Msa0133140:CDS 50.0%
GCGCACTCTGCAAGCATTAT+GGG + chr1_3:64448042-64448061 Msa0133140:CDS 50.0%
CGCACTCTGCAAGCATTATG+GGG + chr1_3:64448043-64448062 Msa0133140:CDS 50.0%
TGGGTCGGTACGGTGTAAAG+CGG + chr1_3:64447081-64447100 Msa0133140:CDS 55.0%
ATAACGGCGTTTATGGCCCC+TGG + chr1_3:64447128-64447147 Msa0133140:CDS 55.0%
TCTTCGGCTTCAACGGTCCA+GGG - chr1_3:64447148-64447167 None:intergenic 55.0%
ATCTTCGGCTTCAACGGTCC+AGG - chr1_3:64447149-64447168 None:intergenic 55.0%
! GTCATTGGGTCAGGTGGGTT+GGG + chr1_3:64447977-64447996 Msa0133140:CDS 55.0%
CTGCAAGCATTATGGGGCCT+CGG + chr1_3:64448049-64448068 Msa0133140:CDS 55.0%
TGCAAGCATTATGGGGCCTC+GGG + chr1_3:64448050-64448069 Msa0133140:CDS 55.0%
CTACATCACCCTTGCCCAAC+CGG + chr1_3:64448093-64448112 Msa0133140:CDS 55.0%
CGACAAGCCAGACAGCTGAT+GGG - chr1_3:64448153-64448172 None:intergenic 55.0%
! CCATCAGCTGTCTGGCTTGT+CGG + chr1_3:64448151-64448170 Msa0133140:CDS 55.0%
TGGGTCGGTACGGTGTAAAG+CGG + chr1_3:64447081-64447100 Msa0133140:CDS 55.0%
ATAACGGCGTTTATGGCCCC+TGG + chr1_3:64447128-64447147 Msa0133140:CDS 55.0%
TCTTCGGCTTCAACGGTCCA+GGG - chr1_3:64447148-64447167 None:intergenic 55.0%
ATCTTCGGCTTCAACGGTCC+AGG - chr1_3:64447149-64447168 None:intergenic 55.0%
! GTCATTGGGTCAGGTGGGTT+GGG + chr1_3:64447977-64447996 Msa0133140:CDS 55.0%
CTGCAAGCATTATGGGGCCT+CGG + chr1_3:64448049-64448068 Msa0133140:CDS 55.0%
TGCAAGCATTATGGGGCCTC+GGG + chr1_3:64448050-64448069 Msa0133140:CDS 55.0%
CTACATCACCCTTGCCCAAC+CGG + chr1_3:64448093-64448112 Msa0133140:CDS 55.0%
CGACAAGCCAGACAGCTGAT+GGG - chr1_3:64448153-64448172 None:intergenic 55.0%
! CCATCAGCTGTCTGGCTTGT+CGG + chr1_3:64448151-64448170 Msa0133140:CDS 55.0%
GTCGGTACGGTGTAAAGCGG+CGG + chr1_3:64447084-64447103 Msa0133140:CDS 60.0%
TCGGTACGGTGTAAAGCGGC+GGG + chr1_3:64447085-64447104 Msa0133140:CDS 60.0%
CTTCGGCTTCAACGGTCCAG+GGG - chr1_3:64447147-64447166 None:intergenic 60.0%
GCATCTGCCGCCTATTTGCC+TGG + chr1_3:64447911-64447930 Msa0133140:CDS 60.0%
CGTCATTGGGTCAGGTGGGT+TGG + chr1_3:64447976-64447995 Msa0133140:CDS 60.0%
GCAAGCATTATGGGGCCTCG+GGG + chr1_3:64448051-64448070 Msa0133140:CDS 60.0%
TTATGGGGCCTCGGGGTTCT+TGG + chr1_3:64448058-64448077 Msa0133140:CDS 60.0%
CAGCTGATCCAAGAACCCCG+AGG - chr1_3:64448069-64448088 None:intergenic 60.0%
CGGTTGGGCAAGGGTGATGT+AGG - chr1_3:64448095-64448114 None:intergenic 60.0%
CCGACAAGCCAGACAGCTGA+TGG - chr1_3:64448154-64448173 None:intergenic 60.0%
GTCGGTACGGTGTAAAGCGG+CGG + chr1_3:64447084-64447103 Msa0133140:CDS 60.0%
TCGGTACGGTGTAAAGCGGC+GGG + chr1_3:64447085-64447104 Msa0133140:CDS 60.0%
CTTCGGCTTCAACGGTCCAG+GGG - chr1_3:64447147-64447166 None:intergenic 60.0%
GCATCTGCCGCCTATTTGCC+TGG + chr1_3:64447911-64447930 Msa0133140:CDS 60.0%
CGTCATTGGGTCAGGTGGGT+TGG + chr1_3:64447976-64447995 Msa0133140:CDS 60.0%
GCAAGCATTATGGGGCCTCG+GGG + chr1_3:64448051-64448070 Msa0133140:CDS 60.0%
TTATGGGGCCTCGGGGTTCT+TGG + chr1_3:64448058-64448077 Msa0133140:CDS 60.0%
CAGCTGATCCAAGAACCCCG+AGG - chr1_3:64448069-64448088 None:intergenic 60.0%
CGGTTGGGCAAGGGTGATGT+AGG - chr1_3:64448095-64448114 None:intergenic 60.0%
CCGACAAGCCAGACAGCTGA+TGG - chr1_3:64448154-64448173 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 64446835 64448373 64446835 ID=Msa0133140;Name=Msa0133140
chr1_3 mRNA 64446835 64448373 64446835 ID=Msa0133140-mRNA-1;Parent=Msa0133140;Name=Msa0133140-mRNA-1;_AED=0.03;_eAED=0.03;_QI=112|0.5|0.33|0.66|0.5|0.66|3|0|199
chr1_3 exon 64446835 64447177 64446835 ID=Msa0133140-mRNA-1:exon:21648;Parent=Msa0133140-mRNA-1
chr1_3 exon 64447857 64448214 64447857 ID=Msa0133140-mRNA-1:exon:21649;Parent=Msa0133140-mRNA-1
chr1_3 exon 64448363 64448373 64448363 ID=Msa0133140-mRNA-1:exon:21650;Parent=Msa0133140-mRNA-1
chr1_3 five_prime_UTR 64446835 64446946 64446835 ID=Msa0133140-mRNA-1:five_prime_utr;Parent=Msa0133140-mRNA-1
chr1_3 CDS 64446947 64447177 64446947 ID=Msa0133140-mRNA-1:cds;Parent=Msa0133140-mRNA-1
chr1_3 CDS 64447857 64448214 64447857 ID=Msa0133140-mRNA-1:cds;Parent=Msa0133140-mRNA-1
chr1_3 CDS 64448363 64448373 64448363 ID=Msa0133140-mRNA-1:cds;Parent=Msa0133140-mRNA-1
Gene Sequence

>Msa0133140

ATGGCGTTACAAGGATTAAGTACTGTTTCTGTGGCGGTTTCAATATCTGTAAGGCCTTCCATTTCTAATCTTGTTCGAATTCCTTCTTCAAGTTTATGTCTTGGCGGTCGGGTCCCTTCTCCGAGAATCAGAATTGGGTCGGTACGGTGTAAAGCGGCGGGAGAAAACCAACAACAAGTTTATAACGGCGTTTATGGCCCCTGGACCGTTGAAGCCGAAGATGTCAAAGAGGTTATATCGTACCGATCAGGATTGGTAACAGCTGCGGCATCGTTCGTCATCGCTGCATCTGCCGCCTATTTGCCTGGTGACCTAAGTGATACGCTCAAGCAAAACATTGATTTTTTTTACGTCATTGGGTCAGGTGGGTTGGGTTTATCATTATTCTTGATTCATATCTATGTGACTGAAATCAAGCGCACTCTGCAAGCATTATGGGGCCTCGGGGTTCTTGGATCAGCTGCAACCTACATCACCCTTGCCCAACCGGCTAATAAAACTTTAATACAGTATGTTATTGATAACCCATCAGCTGTCTGGCTTGTCGGTCCTCTTTTTGCTGCTTTGACAGGACTTGTTTTCAAGGAAGGCACTAACTAG

Protein sequence

>Msa0133140

MALQGLSTVSVAVSISVRPSISNLVRIPSSSLCLGGRVPSPRIRIGSVRCKAAGENQQQVYNGVYGPWTVEAEDVKEVISYRSGLVTAAASFVIAASAAYLPGDLSDTLKQNIDFFYVIGSGGLGLSLFLIHIYVTEIKRTLQALWGLGVLGSAATYITLAQPANKTLIQYVIDNPSAVWLVGPLFAALTGLVFKEGTN*