Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129930 | XP_003591689.2 | 97.500 | 200 | 5 | 0 | 1 | 200 | 1 | 200 | 4.15e-142 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129930 | G7I414 | 97.740 | 177 | 4 | 0 | 24 | 200 | 1 | 177 | 6.47e-125 | 359 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa0129930 | 0.853961 | 1.690169e-61 | -8.615850e-47 |
| Msa0007810 | Msa0129930 | 0.869161 | 3.808575e-66 | -8.615850e-47 |
| Msa0011410 | Msa0129930 | 0.817860 | 2.648892e-52 | -8.615850e-47 |
| Msa0011440 | Msa0129930 | 0.829376 | 5.328222e-55 | -8.615850e-47 |
| Msa0011450 | Msa0129930 | 0.844855 | 5.837150e-59 | -8.615850e-47 |
| Msa0017300 | Msa0129930 | 0.811352 | 7.307622e-51 | -8.615850e-47 |
| Msa0024240 | Msa0129930 | 0.808517 | 2.978847e-50 | -8.615850e-47 |
| Msa0026250 | Msa0129930 | -0.805706 | 1.172488e-49 | -8.615850e-47 |
| Msa0033220 | Msa0129930 | -0.833996 | 3.867997e-56 | -8.615850e-47 |
| Msa0034700 | Msa0129930 | 0.986012 | 2.174122e-165 | -8.615850e-47 |
| Msa0038150 | Msa0129930 | 0.831310 | 1.795210e-55 | -8.615850e-47 |
| Msa0044530 | Msa0129930 | 0.846142 | 2.614843e-59 | -8.615850e-47 |
| Msa0053260 | Msa0129930 | 0.800202 | 1.609590e-48 | -8.615850e-47 |
| Msa0056220 | Msa0129930 | 0.817714 | 2.858183e-52 | -8.615850e-47 |
| Msa0056230 | Msa0129930 | 0.872995 | 2.070910e-67 | -8.615850e-47 |
| Msa0060410 | Msa0129930 | -0.801395 | 9.190192e-49 | -8.615850e-47 |
| Msa0065670 | Msa0129930 | 0.840902 | 6.574144e-58 | -8.615850e-47 |
| Msa0066890 | Msa0129930 | 0.851445 | 8.837188e-61 | -8.615850e-47 |
| Msa0077570 | Msa0129930 | 0.852703 | 3.879680e-61 | -8.615850e-47 |
| Msa0079880 | Msa0129930 | -0.809513 | 1.823455e-50 | -8.615850e-47 |
| Msa0080030 | Msa0129930 | -0.809413 | 1.916091e-50 | -8.615850e-47 |
| Msa0080820 | Msa0129930 | -0.821383 | 4.157995e-53 | -8.615850e-47 |
| Msa0086620 | Msa0129930 | 0.807255 | 5.526300e-50 | -8.615850e-47 |
| Msa0091220 | Msa0129930 | 0.835497 | 1.621067e-56 | -8.615850e-47 |
| Msa0091240 | Msa0129930 | 0.847540 | 1.083974e-59 | -8.615850e-47 |
| Msa0094170 | Msa0129930 | 0.821742 | 3.435446e-53 | -8.615850e-47 |
| Msa0095810 | Msa0129930 | 0.858927 | 5.885678e-63 | -8.615850e-47 |
| Msa0098500 | Msa0129930 | 0.800662 | 1.297393e-48 | -8.615850e-47 |
| Msa0105140 | Msa0129930 | 0.811102 | 8.282130e-51 | -8.615850e-47 |
| Msa0111110 | Msa0129930 | 0.855354 | 6.674813e-62 | -8.615850e-47 |
| Msa0129930 | Msa0133140 | 0.841650 | 4.178824e-58 | -8.615850e-47 |
| Msa0129930 | Msa0136180 | 0.813205 | 2.879838e-51 | -8.615850e-47 |
| Msa0129930 | Msa0138990 | 0.811889 | 5.586257e-51 | -8.615850e-47 |
| Msa0129930 | Msa0151380 | 0.836011 | 1.201255e-56 | -8.615850e-47 |
| Msa0129930 | Msa0151510 | 0.838703 | 2.457105e-57 | -8.615850e-47 |
| Msa0129930 | Msa0154880 | 0.847376 | 1.202281e-59 | -8.615850e-47 |
| Msa0129930 | Msa0154890 | 0.860327 | 2.230853e-63 | -8.615850e-47 |
| Msa0129930 | Msa0165640 | -0.812777 | 3.574401e-51 | -8.615850e-47 |
| Msa0129930 | Msa0180520 | 0.836756 | 7.766369e-57 | -8.615850e-47 |
| Msa0129930 | Msa0183310 | 0.856927 | 2.310257e-62 | -8.615850e-47 |
| Msa0129930 | Msa0189250 | 0.813408 | 2.599128e-51 | -8.615850e-47 |
| Msa0129930 | Msa0189560 | 0.867100 | 1.755587e-65 | -8.615850e-47 |
| Msa0129930 | Msa0221180 | -0.822666 | 2.096698e-53 | -8.615850e-47 |
| Msa0129930 | Msa0225790 | 0.807482 | 4.947294e-50 | -8.615850e-47 |
| Msa0129930 | Msa0229750 | 0.857136 | 2.004495e-62 | -8.615850e-47 |
| Msa0129930 | Msa0241750 | -0.800308 | 1.531801e-48 | -8.615850e-47 |
| Msa0129930 | Msa0260580 | 0.814914 | 1.208606e-51 | -8.615850e-47 |
| Msa0129930 | Msa0261350 | 0.803180 | 3.943036e-49 | -8.615850e-47 |
| Msa0129930 | Msa0262350 | 0.800027 | 1.747079e-48 | -8.615850e-47 |
| Msa0129930 | Msa0262750 | -0.831457 | 1.651419e-55 | -8.615850e-47 |
| Msa0129930 | Msa0267450 | 0.823788 | 1.146932e-53 | -8.615850e-47 |
| Msa0129930 | Msa0267510 | 0.827452 | 1.552500e-54 | -8.615850e-47 |
| Msa0129930 | Msa0269220 | 0.854781 | 9.793607e-62 | -8.615850e-47 |
| Msa0129930 | Msa0270830 | 0.819485 | 1.133350e-52 | -8.615850e-47 |
| Msa0129930 | Msa0293060 | 0.817573 | 3.075014e-52 | -8.615850e-47 |
| Msa0129930 | Msa0293070 | 0.826780 | 2.248264e-54 | -8.615850e-47 |
| Msa0129930 | Msa0299130 | 0.804754 | 1.855968e-49 | -8.615850e-47 |
| Msa0129930 | Msa0300470 | -0.835743 | 1.404900e-56 | -8.615850e-47 |
| Msa0129930 | Msa0326170 | 0.845509 | 3.885899e-59 | -8.615850e-47 |
| Msa0129930 | Msa0331070 | 0.824915 | 6.229956e-54 | -8.615850e-47 |
| Msa0129930 | Msa0337970 | -0.854058 | 1.584802e-61 | -8.615850e-47 |
| Msa0129930 | Msa0340700 | 0.815019 | 1.145761e-51 | -8.615850e-47 |
| Msa0129930 | Msa0354970 | 0.840127 | 1.048362e-57 | -8.615850e-47 |
| Msa0129930 | Msa0355080 | 0.858645 | 7.147781e-63 | -8.615850e-47 |
| Msa0129930 | Msa0364910 | 0.808404 | 3.148557e-50 | -8.615850e-47 |
| Msa0129930 | Msa0365210 | -0.832142 | 1.118723e-55 | -8.615850e-47 |
| Msa0129930 | Msa0369580 | 0.832807 | 7.656016e-56 | -8.615850e-47 |
| Msa0129930 | Msa0371350 | 0.854408 | 1.255418e-61 | -8.615850e-47 |
| Msa0129930 | Msa0375330 | 0.800554 | 1.365079e-48 | -8.615850e-47 |
| Msa0129930 | Msa0375930 | 0.844804 | 6.024498e-59 | -8.615850e-47 |
| Msa0129930 | Msa0385930 | 0.820884 | 5.417994e-53 | -8.615850e-47 |
| Msa0129930 | Msa0387740 | 0.853322 | 2.579254e-61 | -8.615850e-47 |
| Msa0129930 | Msa0402070 | 0.858431 | 8.279234e-63 | -8.615850e-47 |
| Msa0129930 | Msa0412580 | 0.834179 | 3.480607e-56 | -8.615850e-47 |
| Msa0129930 | Msa0419420 | 0.843267 | 1.556790e-58 | -8.615850e-47 |
| Msa0129930 | Msa0424570 | 0.842972 | 1.865002e-58 | -8.615850e-47 |
| Msa0129930 | Msa0437440 | 0.860754 | 1.656208e-63 | -8.615850e-47 |
| Msa0129930 | Msa0438150 | 0.820240 | 7.613936e-53 | -8.615850e-47 |
| Msa0129930 | Msa0438680 | 0.856567 | 2.948872e-62 | -8.615850e-47 |
| Msa0129930 | Msa0450890 | 0.809457 | 1.874562e-50 | -8.615850e-47 |
| Msa0129930 | Msa0457070 | 0.811347 | 7.326916e-51 | -8.615850e-47 |
| Msa0129930 | Msa0457570 | -0.806140 | 9.504214e-50 | -8.615850e-47 |
| Msa0129930 | Msa0463820 | 0.838679 | 2.492340e-57 | -8.615850e-47 |
| Msa0129930 | Msa0480900 | 0.820956 | 5.215771e-53 | -8.615850e-47 |
| Msa0129930 | Msa0516000 | 0.852508 | 4.408719e-61 | -8.615850e-47 |
| Msa0129930 | Msa0525180 | 0.836996 | 6.742452e-57 | -8.615850e-47 |
| Msa0129930 | Msa0541880 | -0.809027 | 2.317834e-50 | -8.615850e-47 |
| Msa0129930 | Msa0541940 | -0.817599 | 3.032683e-52 | -8.615850e-47 |
| Msa0129930 | Msa0570010 | -0.814715 | 1.338081e-51 | -8.615850e-47 |
| Msa0129930 | Msa0575960 | 0.881343 | 2.597774e-70 | -8.615850e-47 |
| Msa0129930 | Msa0580410 | 0.811809 | 5.812729e-51 | -8.615850e-47 |
| Msa0129930 | Msa0590620 | 0.826098 | 3.268523e-54 | -8.615850e-47 |
| Msa0129930 | Msa0603180 | 0.803554 | 3.298699e-49 | -8.615850e-47 |
| Msa0129930 | Msa0619320 | 0.829000 | 6.575401e-55 | -8.615850e-47 |
| Msa0129930 | Msa0620900 | -0.834068 | 3.711545e-56 | -8.615850e-47 |
| Msa0129930 | Msa0638300 | 0.820008 | 8.605609e-53 | -8.615850e-47 |
| Msa0129930 | Msa0676570 | 0.822883 | 1.866825e-53 | -8.615850e-47 |
| Msa0129930 | Msa0685390 | 0.852520 | 4.374156e-61 | -8.615850e-47 |
| Msa0129930 | Msa0685610 | -0.810229 | 1.278896e-50 | -8.615850e-47 |
| Msa0129930 | Msa0686950 | 0.803059 | 4.176781e-49 | -8.615850e-47 |
| Msa0129930 | Msa0701800 | 0.807677 | 4.497029e-50 | -8.615850e-47 |
| Msa0129930 | Msa0714230 | 0.815474 | 9.074903e-52 | -8.615850e-47 |
| Msa0129930 | Msa0719270 | -0.802240 | 6.161668e-49 | -8.615850e-47 |
| Msa0129930 | Msa0719750 | -0.832862 | 7.420458e-56 | -8.615850e-47 |
| Msa0129930 | Msa0726170 | 0.802510 | 5.422690e-49 | -8.615850e-47 |
| Msa0129930 | Msa0742370 | 0.844757 | 6.204228e-59 | -8.615850e-47 |
| Msa0129930 | Msa0745140 | -0.801353 | 9.372666e-49 | -8.615850e-47 |
| Msa0129930 | Msa0745630 | 0.820566 | 6.409776e-53 | -8.615850e-47 |
| Msa0129930 | Msa0765110 | -0.801400 | 9.166741e-49 | -8.615850e-47 |
| Msa0129930 | Msa0770540 | 0.817376 | 3.405436e-52 | -8.615850e-47 |
| Msa0129930 | Msa0776640 | -0.800279 | 1.552514e-48 | -8.615850e-47 |
| Msa0129930 | Msa0779450 | 0.830944 | 2.207164e-55 | -8.615850e-47 |
| Msa0129930 | Msa0790650 | 0.808492 | 3.015953e-50 | -8.615850e-47 |
| Msa0129930 | Msa0792840 | 0.824236 | 9.002087e-54 | -8.615850e-47 |
| Msa0129930 | Msa0795750 | -0.818536 | 1.862220e-52 | -8.615850e-47 |
| Msa0129930 | Msa0795910 | 0.811853 | 5.686584e-51 | -8.615850e-47 |
| Msa0129930 | Msa0823480 | 0.862329 | 5.475099e-64 | -8.615850e-47 |
| Msa0129930 | Msa0827340 | 0.826500 | 2.622413e-54 | -8.615850e-47 |
| Msa0129930 | Msa0827520 | 0.800061 | 1.719495e-48 | -8.615850e-47 |
| Msa0129930 | Msa0833360 | 0.804211 | 2.408466e-49 | -8.615850e-47 |
| Msa0129930 | Msa0840520 | -0.801744 | 7.794042e-49 | -8.615850e-47 |
| Msa0129930 | Msa0841050 | -0.813965 | 1.959083e-51 | -8.615850e-47 |
| Msa0129930 | Msa0853200 | 0.803299 | 3.724458e-49 | -8.615850e-47 |
| Msa0129930 | Msa0862480 | 0.853860 | 1.806978e-61 | -8.615850e-47 |
| Msa0129930 | Msa0865420 | -0.806264 | 8.948908e-50 | -8.615850e-47 |
| Msa0129930 | Msa0882270 | 0.810177 | 1.312104e-50 | -8.615850e-47 |
| Msa0129930 | Msa0882310 | 0.802443 | 5.597215e-49 | -8.615850e-47 |
| Msa0129930 | Msa0901730 | -0.801956 | 7.048812e-49 | -8.615850e-47 |
| Msa0129930 | Msa0909260 | -0.802437 | 5.612721e-49 | -8.615850e-47 |
| Msa0129930 | Msa0919120 | 0.803301 | 3.722222e-49 | -8.615850e-47 |
| Msa0129930 | Msa0941150 | 0.816903 | 4.349311e-52 | -8.615850e-47 |
| Msa0129930 | Msa0964400 | 0.815656 | 8.267906e-52 | -8.615850e-47 |
| Msa0129930 | Msa1014550 | 0.821673 | 3.563203e-53 | -8.615850e-47 |
| Msa0129930 | Msa1017610 | 0.825059 | 5.762867e-54 | -8.615850e-47 |
| Msa0129930 | Msa1019040 | 0.808155 | 3.559048e-50 | -8.615850e-47 |
| Msa0129930 | Msa1027160 | -0.801586 | 8.394632e-49 | -8.615850e-47 |
| Msa0129930 | Msa1033430 | -0.826424 | 2.732973e-54 | -8.615850e-47 |
| Msa0129930 | Msa1037450 | 0.825002 | 5.942537e-54 | -8.615850e-47 |
| Msa0129930 | Msa1039440 | 0.846882 | 1.643176e-59 | -8.615850e-47 |
| Msa0129930 | Msa1041060 | -0.802036 | 6.787238e-49 | -8.615850e-47 |
| Msa0129930 | Msa1042300 | -0.801259 | 9.795183e-49 | -8.615850e-47 |
| Msa0129930 | Msa1055520 | 0.803074 | 4.146331e-49 | -8.615850e-47 |
| Msa0129930 | Msa1073050 | -0.828235 | 1.006549e-54 | -8.615850e-47 |
| Msa0129930 | Msa1078280 | 0.819843 | 9.387649e-53 | -8.615850e-47 |
| Msa0129930 | Msa1078590 | 0.835410 | 1.705179e-56 | -8.615850e-47 |
| Msa0129930 | Msa1078760 | 0.833881 | 4.132499e-56 | -8.615850e-47 |
| Msa0129930 | Msa1085570 | 0.891402 | 4.104700e-74 | -8.615850e-47 |
| Msa0129930 | Msa1088400 | 0.804552 | 2.044684e-49 | -8.615850e-47 |
| Msa0129930 | Msa1088740 | 0.813643 | 2.306940e-51 | -8.615850e-47 |
| Msa0129930 | Msa1101610 | 0.839465 | 1.559546e-57 | -8.615850e-47 |
| Msa0129930 | Msa1123490 | 0.839345 | 1.674974e-57 | -8.615850e-47 |
| Msa0129930 | Msa1128520 | 0.828928 | 6.843993e-55 | -8.615850e-47 |
| Msa0129930 | Msa1128610 | 0.802062 | 6.702888e-49 | -8.615850e-47 |
| Msa0129930 | Msa1129120 | 0.809731 | 1.636821e-50 | -8.615850e-47 |
| Msa0129930 | Msa1130860 | 0.832757 | 7.879771e-56 | -8.615850e-47 |
| Msa0129930 | Msa1130920 | 0.833865 | 4.171654e-56 | -8.615850e-47 |
| Msa0129930 | Msa1132880 | 0.813501 | 2.479280e-51 | -8.615850e-47 |
| Msa0129930 | Msa1133750 | -0.827408 | 1.590752e-54 | -8.615850e-47 |
| Msa0129930 | Msa1154320 | -0.837709 | 4.429494e-57 | -8.615850e-47 |
| Msa0129930 | Msa1154630 | -0.807360 | 5.251379e-50 | -8.615850e-47 |
| Msa0129930 | Msa1165460 | -0.824883 | 6.339006e-54 | -8.615850e-47 |
| Msa0129930 | Msa1169590 | 0.843620 | 1.253117e-58 | -8.615850e-47 |
| Msa0129930 | Msa1190350 | 0.807501 | 4.901841e-50 | -8.615850e-47 |
| Msa0129930 | Msa1191530 | 0.812103 | 5.017360e-51 | -8.615850e-47 |
| Msa0129930 | Msa1199540 | 0.824344 | 8.495191e-54 | -8.615850e-47 |
| Msa0129930 | Msa1204900 | 0.805341 | 1.398954e-49 | -8.615850e-47 |
| Msa0129930 | Msa1205110 | -0.804614 | 1.985035e-49 | -8.615850e-47 |
| Msa0129930 | Msa1228580 | -0.831888 | 1.292711e-55 | -8.615850e-47 |
| Msa0129930 | Msa1228630 | -0.801057 | 1.077249e-48 | -8.615850e-47 |
| Msa0129930 | Msa1240190 | -0.821092 | 4.852189e-53 | -8.615850e-47 |
| Msa0129930 | Msa1240220 | -0.823496 | 1.342728e-53 | -8.615850e-47 |
| Msa0129930 | Msa1256490 | 0.804163 | 2.464378e-49 | -8.615850e-47 |
| Msa0129930 | Msa1266120 | 0.829724 | 4.386011e-55 | -8.615850e-47 |
| Msa0129930 | Msa1279200 | 0.816011 | 6.888573e-52 | -8.615850e-47 |
| Msa0129930 | Msa1287100 | 0.828234 | 1.006813e-54 | -8.615850e-47 |
| Msa0129930 | Msa1295210 | 0.815344 | 9.698756e-52 | -8.615850e-47 |
| Msa0129930 | Msa1295480 | 0.826831 | 2.186032e-54 | -8.615850e-47 |
| Msa0129930 | Msa1301280 | 0.813856 | 2.070917e-51 | -8.615850e-47 |
| Msa0129930 | Msa1308850 | -0.838462 | 2.835707e-57 | -8.615850e-47 |
| Msa0129930 | Msa1322960 | -0.803405 | 3.541996e-49 | -8.615850e-47 |
| Msa0129930 | Msa1323070 | -0.817513 | 3.172163e-52 | -8.615850e-47 |
| Msa0129930 | Msa1328680 | 0.816097 | 6.591793e-52 | -8.615850e-47 |
| Msa0129930 | Msa1331570 | 0.809188 | 2.140276e-50 | -8.615850e-47 |
| Msa0129930 | Msa1333220 | 0.804328 | 2.276960e-49 | -8.615850e-47 |
| Msa0129930 | Msa1348170 | 0.803284 | 3.751393e-49 | -8.615850e-47 |
| Msa0129930 | Msa1352600 | 0.826147 | 3.181784e-54 | -8.615850e-47 |
| Msa0129930 | Msa1357070 | -0.830878 | 2.291967e-55 | -8.615850e-47 |
| Msa0129930 | Msa1361670 | 0.805478 | 1.309263e-49 | -8.615850e-47 |
| Msa0129930 | Msa1366140 | 0.867412 | 1.395074e-65 | -8.615850e-47 |
| Msa0129930 | Msa1367260 | 0.831053 | 2.076111e-55 | -8.615850e-47 |
| Msa0129930 | Msa1386180 | 0.819068 | 1.409882e-52 | -8.615850e-47 |
| Msa0129930 | Msa1387450 | 0.876156 | 1.746259e-68 | -8.615850e-47 |
| Msa0129930 | Msa1388720 | 0.806935 | 6.458755e-50 | -8.615850e-47 |
| Msa0129930 | Msa1396200 | 0.841316 | 5.116482e-58 | -8.615850e-47 |
| Msa0129930 | Msa1417370 | -0.819165 | 1.339974e-52 | -8.615850e-47 |
| Msa0129930 | Msa1421520 | 0.805614 | 1.225839e-49 | -8.615850e-47 |
| Msa0129930 | Msa1421630 | -0.834830 | 2.389021e-56 | -8.615850e-47 |
| Msa0129930 | Msa1422820 | 0.839733 | 1.327958e-57 | -8.615850e-47 |
| Msa0129930 | Msa1422860 | -0.814328 | 1.629275e-51 | -8.615850e-47 |
| Msa0129930 | Msa1428230 | 0.858829 | 6.297660e-63 | -8.615850e-47 |
| Msa0129930 | Msa1431510 | 0.804952 | 1.687546e-49 | -8.615850e-47 |
| Msa0129930 | Msa1434710 | 0.873299 | 1.637907e-67 | -8.615850e-47 |
| Msa0129930 | Msa1436620 | -0.804486 | 2.111252e-49 | -8.615850e-47 |
| Msa0129930 | Msa1439250 | -0.806489 | 8.024835e-50 | -8.615850e-47 |
| Msa0129930 | Msa1452790 | 0.813212 | 2.868860e-51 | -8.615850e-47 |
| Msa0129930 | Msa1459130 | 0.812767 | 3.592910e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129930 | MtrunA17_Chr1g0197111 | 97.661 | 171 | 4 | 0 | 30 | 200 | 2 | 172 | 5.56e-124 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129930 | AT5G04830.1 | 68.000 | 175 | 56 | 0 | 24 | 198 | 1 | 175 | 3.98e-88 | 257 |
| Msa0129930 | AT5G04830.2 | 68.000 | 175 | 56 | 0 | 24 | 198 | 1 | 175 | 3.98e-88 | 257 |
Find 71 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTTACTTTAATGTTAT+AGG | 0.178055 | 1_3:+59993140 | Msa0129930:three_prime_UTR |
| TAACTATATCGATACTTATC+TGG | 0.206637 | 1_3:-59992876 | None:intergenic |
| AATGAAGATGGGAGTGAAAA+TGG | 0.263009 | 1_3:+59993074 | Msa0129930:three_prime_UTR |
| GTACTTTGTTCAATAACTTT+TGG | 0.285964 | 1_3:+59993012 | Msa0129930:three_prime_UTR |
| AATAATATTCTCTCTGTATA+TGG | 0.303134 | 1_3:+59992936 | Msa0129930:three_prime_UTR |
| ATCTTGAGCTTTATTATAAA+CGG | 0.308679 | 1_3:+59992728 | Msa0129930:three_prime_UTR |
| GCCAAGCAATGGCAGCTTTA+CGG | 0.310362 | 1_3:-59992602 | None:intergenic |
| ACGGTTTCTCGATTAGAAAT+TGG | 0.320559 | 1_3:-59992583 | None:intergenic |
| ATGTGTTGGTGGCGCCTTAT+TGG | 0.327537 | 1_3:-59989976 | None:intergenic |
| TGCCCCAGATGCTTCCTTTG+AGG | 0.337499 | 1_3:+59990827 | Msa0129930:CDS |
| CTCATGTGTTTATGAGGTTC+GGG | 0.344969 | 1_3:+59992665 | Msa0129930:CDS |
| TAAACAACACTATAAAATCT+TGG | 0.356459 | 1_3:+59992387 | Msa0129930:CDS |
| AAACAACACTATAAAATCTT+GGG | 0.358378 | 1_3:+59992388 | Msa0129930:CDS |
| ACTCATGTGTTTATGAGGTT+CGG | 0.375084 | 1_3:+59992664 | Msa0129930:CDS |
| GGCCACGTTGAAGGCCAATA+AGG | 0.381165 | 1_3:+59989962 | None:intergenic |
| CATACCCTTGTGCACGCATA+AGG | 0.386726 | 1_3:-59990854 | None:intergenic |
| GGATCCTCAAAGGAAGCATC+TGG | 0.400063 | 1_3:-59990831 | None:intergenic |
| ATCCTAGTTATTCAAACAGT+TGG | 0.403386 | 1_3:-59992694 | None:intergenic |
| GAAGGTTGATATAATGAAGA+TGG | 0.407867 | 1_3:+59993062 | Msa0129930:three_prime_UTR |
| TCTTGAGCTTTATTATAAAC+GGG | 0.408619 | 1_3:+59992729 | Msa0129930:three_prime_UTR |
| TTTGAATTATAAATACATAT+AGG | 0.430140 | 1_3:-59992906 | None:intergenic |
| CTTGGGGAAGGATATAGATA+TGG | 0.432777 | 1_3:+59992405 | Msa0129930:CDS |
| AGAAAATTTGCAATGGATGC+TGG | 0.436427 | 1_3:+59990146 | Msa0129930:CDS |
| ATACCCTTGTGCACGCATAA+GGG | 0.439382 | 1_3:-59990853 | None:intergenic |
| GACTAGATACTTGGCGTCGT+TGG | 0.459334 | 1_3:+59992763 | Msa0129930:three_prime_UTR |
| TAGCAACTCATGTGTTTATG+AGG | 0.462800 | 1_3:+59992659 | Msa0129930:CDS |
| ACCGTAAAGCTGCCATTGCT+TGG | 0.469791 | 1_3:+59992601 | Msa0129930:CDS |
| AATATAGTTTCACCAGGAAA+AGG | 0.472637 | 1_3:+59992228 | Msa0129930:CDS |
| AAGGTTGATATAATGAAGAT+GGG | 0.494698 | 1_3:+59993063 | Msa0129930:three_prime_UTR |
| TGTACATGAGACTAGATACT+TGG | 0.508230 | 1_3:+59992754 | Msa0129930:three_prime_UTR |
| AAGTTATTCGCCATGAGGAC+TGG | 0.509945 | 1_3:+59992461 | Msa0129930:CDS |
| ACGAAGAATATGAGGAATGA+TGG | 0.519999 | 1_3:-59990314 | None:intergenic |
| GGAAAGACAGAGAGAAGTTG+AGG | 0.529577 | 1_3:-59990123 | None:intergenic |
| GATCCTCAAAGGAAGCATCT+GGG | 0.532003 | 1_3:-59990830 | None:intergenic |
| AACTATATCGATACTTATCT+GGG | 0.534659 | 1_3:-59992875 | None:intergenic |
| GAAAGACAGAGAGAAGTTGA+GGG | 0.534700 | 1_3:-59990122 | None:intergenic |
| TCCTCTTCTTTCTCTTCCCG+CGG | 0.537181 | 1_3:+59989999 | Msa0129930:five_prime_UTR |
| GAGTTGCAGAAATGACTCGC+AGG | 0.539872 | 1_3:+59992626 | Msa0129930:CDS |
| GTTTAGTGAGTCAAAGATTG+TGG | 0.542684 | 1_3:+59992188 | Msa0129930:CDS |
| GCTTACAGACGAAGAATATG+AGG | 0.543719 | 1_3:-59990322 | None:intergenic |
| TCTTTCCAGAAAATTTGCAA+TGG | 0.557794 | 1_3:+59990139 | Msa0129930:CDS |
| GATCCCCTTATGCGTGCACA+AGG | 0.558146 | 1_3:+59990849 | Msa0129930:CDS |
| ATGAATGCTGAACTTCTATG+TGG | 0.562542 | 1_3:+59992823 | Msa0129930:three_prime_UTR |
| TACCCTTGTGCACGCATAAG+GGG | 0.564830 | 1_3:-59990852 | None:intergenic |
| AGCATTCTACTCTCTCCCTA+AGG | 0.568779 | 1_3:+59991801 | Msa0129930:CDS |
| TCTATGTGGAACTTAACTTG+TGG | 0.571802 | 1_3:+59992837 | Msa0129930:three_prime_UTR |
| AAAGAAGAGGAATGTGTTGG+TGG | 0.574732 | 1_3:-59989987 | None:intergenic |
| GAGAAAGAAGAGGAATGTGT+TGG | 0.575607 | 1_3:-59989990 | None:intergenic |
| AATCAAGTTGTCTGTTGAGG+AGG | 0.578173 | 1_3:+59992435 | Msa0129930:CDS |
| ATCCAACTGTTTGAATAACT+AGG | 0.578652 | 1_3:+59992692 | Msa0129930:exon |
| TGCGAGTCATTTCTGCAACT+CGG | 0.586117 | 1_3:-59992624 | None:intergenic |
| GATTTCAAAATCGCGAGCCG+AGG | 0.590043 | 1_3:-59990802 | None:intergenic |
| ACGCATAAGGGGATCCTCAA+AGG | 0.592676 | 1_3:-59990841 | None:intergenic |
| ATCCTCAAAGGAAGCATCTG+GGG | 0.592747 | 1_3:-59990829 | None:intergenic |
| TTAATACATACCAGTCCTCA+TGG | 0.594288 | 1_3:-59992471 | None:intergenic |
| GCTAATCAAGTTGTCTGTTG+AGG | 0.594764 | 1_3:+59992432 | Msa0129930:CDS |
| TCTGCAACTCGGCCAAGCAA+TGG | 0.600748 | 1_3:-59992613 | None:intergenic |
| CAGATATGGATCATGTGCCT+CGG | 0.601141 | 1_3:+59990785 | Msa0129930:intron |
| ACACTATAAAATCTTGGGGA+AGG | 0.605202 | 1_3:+59992393 | Msa0129930:CDS |
| ATCAAGTTGTCTGTTGAGGA+GGG | 0.610196 | 1_3:+59992436 | Msa0129930:CDS |
| AACAACACTATAAAATCTTG+GGG | 0.612536 | 1_3:+59992389 | Msa0129930:CDS |
| AGTTGCAGAAATGACTCGCA+GGG | 0.615808 | 1_3:+59992627 | Msa0129930:CDS |
| GAAGAAAATATAGTTTCACC+AGG | 0.619089 | 1_3:+59992222 | Msa0129930:CDS |
| TGTGTTTATGAGGTTCGGGA+AGG | 0.634450 | 1_3:+59992669 | Msa0129930:CDS |
| TTTAACATACAATATGACGA+TGG | 0.656798 | 1_3:-59993101 | None:intergenic |
| AGTTTCACCAGGAAAAGGAG+AGG | 0.669375 | 1_3:+59992233 | Msa0129930:CDS |
| ACCGCGGGAAGAGAAAGAAG+AGG | 0.680916 | 1_3:-59990000 | None:intergenic |
| GGGTAAAGTTATTCGCCATG+AGG | 0.689924 | 1_3:+59992456 | Msa0129930:CDS |
| ATCCCCTTATGCGTGCACAA+GGG | 0.714021 | 1_3:+59990850 | Msa0129930:CDS |
| GTTGCAGAAATGACTCGCAG+GGG | 0.731921 | 1_3:+59992628 | Msa0129930:CDS |
| TGTGTCTAAAACGTGTCACG+TGG | 0.744102 | 1_3:-59990094 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTGATTTATATATGA+AGG | - | chr1_3:59990065-59990084 | None:intergenic | 10.0% |
| !!! | ATTTATTTACTTTTTTTTAG+CGG | + | chr1_3:59990550-59990569 | Msa0129930:intron | 10.0% |
| !! | TTTGAATTATAAATACATAT+AGG | - | chr1_3:59992909-59992928 | None:intergenic | 10.0% |
| !!! | CAAATTTTTTACTAGAAAAA+GGG | - | chr1_3:59991447-59991466 | None:intergenic | 15.0% |
| !!! | TTCAAATTCTGTTTTATTTA+TGG | + | chr1_3:59991704-59991723 | Msa0129930:intron | 15.0% |
| !!! | TTCTTTTTTCTTTAAGTTTT+GGG | + | chr1_3:59992961-59992980 | Msa0129930:three_prime_UTR | 15.0% |
| !! | ATCATAACAAGAAAGAAATT+AGG | - | chr1_3:59990194-59990213 | None:intergenic | 20.0% |
| !!! | AGTAATAATTTGCTACATTA+TGG | - | chr1_3:59990629-59990648 | None:intergenic | 20.0% |
| !!! | TATTTAGTATTGACGATTTT+AGG | - | chr1_3:59990907-59990926 | None:intergenic | 20.0% |
| !! | CAATTTCATATTCTAACATA+TGG | - | chr1_3:59991202-59991221 | None:intergenic | 20.0% |
| !!! | GGAAATTGACAATTTTTTTT+AGG | - | chr1_3:59991421-59991440 | None:intergenic | 20.0% |
| !!! | GCAAATTTTTTACTAGAAAA+AGG | - | chr1_3:59991448-59991467 | None:intergenic | 20.0% |
| !! | TCAATAGGTTTATATTATTG+CGG | - | chr1_3:59991625-59991644 | None:intergenic | 20.0% |
| !! | ATTTGAATGATCTAAATAGT+TGG | - | chr1_3:59991691-59991710 | None:intergenic | 20.0% |
| !! | AACATCATGAAATATGAATT+TGG | - | chr1_3:59992347-59992366 | None:intergenic | 20.0% |
| !! | TAAACAACACTATAAAATCT+TGG | + | chr1_3:59992387-59992406 | Msa0129930:CDS | 20.0% |
| !! | AAACAACACTATAAAATCTT+GGG | + | chr1_3:59992388-59992407 | Msa0129930:CDS | 20.0% |
| !!! | GTTTTGTATTTACATCAAAT+AGG | + | chr1_3:59992548-59992567 | Msa0129930:intron | 20.0% |
| !!! | ATCTTGAGCTTTATTATAAA+CGG | + | chr1_3:59992728-59992747 | Msa0129930:three_prime_UTR | 20.0% |
| !! | AATAATATTCTCTCTGTATA+TGG | + | chr1_3:59992936-59992955 | Msa0129930:three_prime_UTR | 20.0% |
| !!! | GTTCTTTTTTCTTTAAGTTT+TGG | + | chr1_3:59992960-59992979 | Msa0129930:three_prime_UTR | 20.0% |
| ! | TTCCTTCAAATTCAAGAAAA+CGG | - | chr1_3:59990237-59990256 | None:intergenic | 25.0% |
| !!! | TTTACTTTTTTTTAGCGGAA+TGG | + | chr1_3:59990555-59990574 | Msa0129930:intron | 25.0% |
| ! | TTATGGAAATAAACTTCTCA+CGG | - | chr1_3:59990612-59990631 | None:intergenic | 25.0% |
| ! | TTGAAGTTATAAGCAATACA+AGG | - | chr1_3:59990700-59990719 | None:intergenic | 25.0% |
| ! | CTTGTATGATGTTATATATC+TGG | + | chr1_3:59990944-59990963 | Msa0129930:intron | 25.0% |
| ! | TCTGGTATGATATTAAACAA+TGG | + | chr1_3:59990962-59990981 | Msa0129930:intron | 25.0% |
| ! | CTGGTATGATATTAAACAAT+GGG | + | chr1_3:59990963-59990982 | Msa0129930:intron | 25.0% |
| ! | TATGATATTAAACAATGGGA+AGG | + | chr1_3:59990967-59990986 | Msa0129930:intron | 25.0% |
| ! | AGGTGAACTATGAAATAAAT+TGG | + | chr1_3:59991032-59991051 | Msa0129930:intron | 25.0% |
| ! | TTGAATCTTAATCAGAAAAG+AGG | + | chr1_3:59991126-59991145 | Msa0129930:intron | 25.0% |
| ! | ACTACAGAATGATAAAGAAT+AGG | + | chr1_3:59991371-59991390 | Msa0129930:intron | 25.0% |
| ! | CTACAGAATGATAAAGAATA+GGG | + | chr1_3:59991372-59991391 | Msa0129930:intron | 25.0% |
| !! | TTTTTACTAGAAAAAGGGAA+TGG | - | chr1_3:59991442-59991461 | None:intergenic | 25.0% |
| ! | TACATACATATAAGGGAAAA+GGG | - | chr1_3:59991488-59991507 | None:intergenic | 25.0% |
| ! | TTACATACATATAAGGGAAA+AGG | - | chr1_3:59991489-59991508 | None:intergenic | 25.0% |
| ! | GGTTCTTTACATACATATAA+GGG | - | chr1_3:59991495-59991514 | None:intergenic | 25.0% |
| ! | AGGTTCTTTACATACATATA+AGG | - | chr1_3:59991496-59991515 | None:intergenic | 25.0% |
| !! | TTATGGATACATTCTGTTTT+AGG | + | chr1_3:59991721-59991740 | Msa0129930:intron | 25.0% |
| !! | TATGGATACATTCTGTTTTA+GGG | + | chr1_3:59991722-59991741 | Msa0129930:intron | 25.0% |
| !!! | TTTTTAAAAAATGATGCTGC+AGG | + | chr1_3:59991761-59991780 | Msa0129930:intron | 25.0% |
| !!! | TTTTAAAAAATGATGCTGCA+GGG | + | chr1_3:59991762-59991781 | Msa0129930:intron | 25.0% |
| !! | TTTTATTATTCCATGGCTAT+GGG | - | chr1_3:59991926-59991945 | None:intergenic | 25.0% |
| !! | TCAAGACTTTTATTATTCCA+TGG | - | chr1_3:59991933-59991952 | None:intergenic | 25.0% |
| ! | TACACCAACTTTCTAATTTA+AGG | - | chr1_3:59991990-59992009 | None:intergenic | 25.0% |
| !!! | ATAAAGAGAACTGTTTTAAC+TGG | - | chr1_3:59992051-59992070 | None:intergenic | 25.0% |
| ! | AACAACACTATAAAATCTTG+GGG | + | chr1_3:59992389-59992408 | Msa0129930:CDS | 25.0% |
| ! | AGGAATTATTATTGCCAAAA+AGG | - | chr1_3:59992515-59992534 | None:intergenic | 25.0% |
| ! | TTGTATTTACATCAAATAGG+TGG | + | chr1_3:59992551-59992570 | Msa0129930:intron | 25.0% |
| ! | TGTATTTACATCAAATAGGT+GGG | + | chr1_3:59992552-59992571 | Msa0129930:intron | 25.0% |
| !!! | TCTTGAGCTTTATTATAAAC+GGG | + | chr1_3:59992729-59992748 | Msa0129930:three_prime_UTR | 25.0% |
| ! | AACTATATCGATACTTATCT+GGG | - | chr1_3:59992878-59992897 | None:intergenic | 25.0% |
| ! | TAACTATATCGATACTTATC+TGG | - | chr1_3:59992879-59992898 | None:intergenic | 25.0% |
| ! | CAAGAAGTAAATACAAAAAC+AGG | - | chr1_3:59992993-59993012 | None:intergenic | 25.0% |
| !! | GTACTTTGTTCAATAACTTT+TGG | + | chr1_3:59993012-59993031 | Msa0129930:three_prime_UTR | 25.0% |
| !! | TCAATAACTTTTGGCAATAA+TGG | + | chr1_3:59993021-59993040 | Msa0129930:three_prime_UTR | 25.0% |
| !!! | AAGGTTGATATAATGAAGAT+GGG | + | chr1_3:59993063-59993082 | Msa0129930:three_prime_UTR | 25.0% |
| ! | TTTAACATACAATATGACGA+TGG | - | chr1_3:59993104-59993123 | None:intergenic | 25.0% |
| AAGAAAAAAAACATGAACCG+CGG | - | chr1_3:59990019-59990038 | None:intergenic | 30.0% | |
| TCTTTCCAGAAAATTTGCAA+TGG | + | chr1_3:59990139-59990158 | Msa0129930:CDS | 30.0% | |
| ACAAGAAAGAAATTAGGATG+AGG | - | chr1_3:59990188-59990207 | None:intergenic | 30.0% | |
| ! | TTCCGTTTTCTTGAATTTGA+AGG | + | chr1_3:59990232-59990251 | Msa0129930:intron | 30.0% |
| TTTACAGACGAAGAATATGT+CGG | - | chr1_3:59990439-59990458 | None:intergenic | 30.0% | |
| ! | TATTCTTATTGTATCGACGT+TGG | + | chr1_3:59990752-59990771 | Msa0129930:intron | 30.0% |
| !! | GATTTTAGGAAAGACGAAAA+GGG | - | chr1_3:59990893-59990912 | None:intergenic | 30.0% |
| ! | TTCTTTTACAATGCTAACCT+TGG | + | chr1_3:59991235-59991254 | Msa0129930:intron | 30.0% |
| GTAACATTAATATCATGCCA+AGG | - | chr1_3:59991255-59991274 | None:intergenic | 30.0% | |
| TACAAAAAAGCTCCTAGATT+TGG | - | chr1_3:59991315-59991334 | None:intergenic | 30.0% | |
| ! | AAGGGAAGTATGCAAAATAT+TGG | - | chr1_3:59991470-59991489 | None:intergenic | 30.0% |
| GCATATTGACACAAAAACTT+AGG | - | chr1_3:59991547-59991566 | None:intergenic | 30.0% | |
| TAGGTTTATATTATTGCGGA+AGG | - | chr1_3:59991621-59991640 | None:intergenic | 30.0% | |
| AAGAGGTAATGAAAACCTTA+GGG | - | chr1_3:59991819-59991838 | None:intergenic | 30.0% | |
| TAAGAGGTAATGAAAACCTT+AGG | - | chr1_3:59991820-59991839 | None:intergenic | 30.0% | |
| ! | CTTTTATTATTCCATGGCTA+TGG | - | chr1_3:59991927-59991946 | None:intergenic | 30.0% |
| ACTGCCTTAAATTAGAAAGT+TGG | + | chr1_3:59991983-59992002 | Msa0129930:intron | 30.0% | |
| CTAAGAAACAAGGAGATAAA+AGG | - | chr1_3:59992166-59992185 | None:intergenic | 30.0% | |
| GAAGAAAATATAGTTTCACC+AGG | + | chr1_3:59992222-59992241 | Msa0129930:CDS | 30.0% | |
| AATATAGTTTCACCAGGAAA+AGG | + | chr1_3:59992228-59992247 | Msa0129930:CDS | 30.0% | |
| TATTGCCAAAAAGGAACATA+AGG | - | chr1_3:59992506-59992525 | None:intergenic | 30.0% | |
| TTGGCAATAATAATTCCTGA+TGG | + | chr1_3:59992517-59992536 | Msa0129930:intron | 30.0% | |
| TGGCAATAATAATTCCTGAT+GGG | + | chr1_3:59992518-59992537 | Msa0129930:intron | 30.0% | |
| ATCCAACTGTTTGAATAACT+AGG | + | chr1_3:59992692-59992711 | Msa0129930:exon | 30.0% | |
| ATCCTAGTTATTCAAACAGT+TGG | - | chr1_3:59992697-59992716 | None:intergenic | 30.0% | |
| !! | GAAGGTTGATATAATGAAGA+TGG | + | chr1_3:59993062-59993081 | Msa0129930:three_prime_UTR | 30.0% |
| AGAAAAAAAACATGAACCGC+GGG | - | chr1_3:59990018-59990037 | None:intergenic | 35.0% | |
| ! | AGCATCCATTGCAAATTTTC+TGG | - | chr1_3:59990147-59990166 | None:intergenic | 35.0% |
| AGAAAATTTGCAATGGATGC+TGG | + | chr1_3:59990146-59990165 | Msa0129930:CDS | 35.0% | |
| ACGAAGAATATGAGGAATGA+TGG | - | chr1_3:59990317-59990336 | None:intergenic | 35.0% | |
| AATCTCCACAATACTTAACG+CGG | + | chr1_3:59990356-59990375 | Msa0129930:intron | 35.0% | |
| TACTAGTGTGCTATGTCTTA+TGG | + | chr1_3:59990645-59990664 | Msa0129930:intron | 35.0% | |
| TTGGTGTGGTATTTCAGATA+TGG | + | chr1_3:59990771-59990790 | Msa0129930:intron | 35.0% | |
| !! | CGATTTTAGGAAAGACGAAA+AGG | - | chr1_3:59990894-59990913 | None:intergenic | 35.0% |
| TTGTTGTCTATGCTTCTTGA+TGG | + | chr1_3:59991154-59991173 | Msa0129930:intron | 35.0% | |
| ! | AAAGCTCCTAGATTTGGTTA+GGG | - | chr1_3:59991309-59991328 | None:intergenic | 35.0% |
| ! | AAAAGCTCCTAGATTTGGTT+AGG | - | chr1_3:59991310-59991329 | None:intergenic | 35.0% |
| ATGTCCCAATGTGCATATAA+TGG | + | chr1_3:59991347-59991366 | Msa0129930:intron | 35.0% | |
| ! | AGTGCCATTATATGCACATT+GGG | - | chr1_3:59991354-59991373 | None:intergenic | 35.0% |
| ! | TAGTGCCATTATATGCACAT+TGG | - | chr1_3:59991355-59991374 | None:intergenic | 35.0% |
| CAGAATGATAAAGAATAGGG+AGG | + | chr1_3:59991375-59991394 | Msa0129930:intron | 35.0% | |
| TGTATGTAAAGAACCTGTCA+AGG | + | chr1_3:59991500-59991519 | Msa0129930:intron | 35.0% | |
| ATGTAAAAATAGGCCTTGAC+AGG | - | chr1_3:59991516-59991535 | None:intergenic | 35.0% | |
| !! | GGCTTGCTGAATGTAAAAAT+AGG | - | chr1_3:59991526-59991545 | None:intergenic | 35.0% |
| AATGTATACGAGTGTGGAAT+AGG | - | chr1_3:59991572-59991591 | None:intergenic | 35.0% | |
| ! | TTGTACTACTCTTTTGAGCA+TGG | + | chr1_3:59991663-59991682 | Msa0129930:intron | 35.0% |
| GAGACAAAGTGATTGATAAG+AGG | - | chr1_3:59991836-59991855 | None:intergenic | 35.0% | |
| CAAAATGAAGATCAACGTGA+AGG | - | chr1_3:59991858-59991877 | None:intergenic | 35.0% | |
| CACTAAACAGCTAAGAAACA+AGG | - | chr1_3:59992176-59992195 | None:intergenic | 35.0% | |
| GTTTAGTGAGTCAAAGATTG+TGG | + | chr1_3:59992188-59992207 | Msa0129930:CDS | 35.0% | |
| ACACTATAAAATCTTGGGGA+AGG | + | chr1_3:59992393-59992412 | Msa0129930:CDS | 35.0% | |
| TTAATACATACCAGTCCTCA+TGG | - | chr1_3:59992474-59992493 | None:intergenic | 35.0% | |
| CAAAAAGGAACATAAGGCTA+AGG | - | chr1_3:59992500-59992519 | None:intergenic | 35.0% | |
| !!! | CTTAGCCTTATGTTCCTTTT+TGG | + | chr1_3:59992498-59992517 | Msa0129930:intron | 35.0% |
| ACGGTTTCTCGATTAGAAAT+TGG | - | chr1_3:59992586-59992605 | None:intergenic | 35.0% | |
| TAGCAACTCATGTGTTTATG+AGG | + | chr1_3:59992659-59992678 | Msa0129930:CDS | 35.0% | |
| ACTCATGTGTTTATGAGGTT+CGG | + | chr1_3:59992664-59992683 | Msa0129930:CDS | 35.0% | |
| TGTACATGAGACTAGATACT+TGG | + | chr1_3:59992754-59992773 | Msa0129930:three_prime_UTR | 35.0% | |
| ATGAATGCTGAACTTCTATG+TGG | + | chr1_3:59992823-59992842 | Msa0129930:three_prime_UTR | 35.0% | |
| ! | TCTATGTGGAACTTAACTTG+TGG | + | chr1_3:59992837-59992856 | Msa0129930:three_prime_UTR | 35.0% |
| !! | ACTTTTGGCAATAATGGAGA+TGG | + | chr1_3:59993027-59993046 | Msa0129930:three_prime_UTR | 35.0% |
| !! | CTTTTGGCAATAATGGAGAT+GGG | + | chr1_3:59993028-59993047 | Msa0129930:three_prime_UTR | 35.0% |
| AATGAAGATGGGAGTGAAAA+TGG | + | chr1_3:59993074-59993093 | Msa0129930:three_prime_UTR | 35.0% | |
| AAAGAAGAGGAATGTGTTGG+TGG | - | chr1_3:59989990-59990009 | None:intergenic | 40.0% | |
| GAGAAAGAAGAGGAATGTGT+TGG | - | chr1_3:59989993-59990012 | None:intergenic | 40.0% | |
| GAAAGACAGAGAGAAGTTGA+GGG | - | chr1_3:59990125-59990144 | None:intergenic | 40.0% | |
| ATTTGCAATGGATGCTGGTA+AGG | + | chr1_3:59990151-59990170 | Msa0129930:intron | 40.0% | |
| !! | AGCAATAGACTTTTTGGCAG+TGG | - | chr1_3:59990290-59990309 | None:intergenic | 40.0% |
| ! | GGCATCAGCAATAGACTTTT+TGG | - | chr1_3:59990296-59990315 | None:intergenic | 40.0% |
| GCTTACAGACGAAGAATATG+AGG | - | chr1_3:59990325-59990344 | None:intergenic | 40.0% | |
| ! | CAAATCCGCGTTAAGTATTG+TGG | - | chr1_3:59990364-59990383 | None:intergenic | 40.0% |
| GATTATAGCCTATAACGCAC+CGG | - | chr1_3:59990500-59990519 | None:intergenic | 40.0% | |
| GTGTGCTATGTCTTATGGTT+TGG | + | chr1_3:59990650-59990669 | Msa0129930:intron | 40.0% | |
| ! | CTTATGGTTTGGATCATGCT+AGG | + | chr1_3:59990661-59990680 | Msa0129930:intron | 40.0% |
| ! | TTATTGTATCGACGTTGGTG+TGG | + | chr1_3:59990757-59990776 | Msa0129930:intron | 40.0% |
| TTCAAGTGTACCCACTAGAA+AGG | + | chr1_3:59991004-59991023 | Msa0129930:intron | 40.0% | |
| TACCCACTAGAAAGGTGATT+AGG | + | chr1_3:59991012-59991031 | Msa0129930:intron | 40.0% | |
| ! | CACCTAATCACCTTTCTAGT+GGG | - | chr1_3:59991017-59991036 | None:intergenic | 40.0% |
| TCACCTAATCACCTTTCTAG+TGG | - | chr1_3:59991018-59991037 | None:intergenic | 40.0% | |
| !! | GCTTCTTGATGGTGAAATCA+CGG | + | chr1_3:59991165-59991184 | Msa0129930:intron | 40.0% |
| GGGGCTATAAGTCTTTATCA+TGG | - | chr1_3:59991289-59991308 | None:intergenic | 40.0% | |
| TATAGCCCCTAACCAAATCT+AGG | + | chr1_3:59991300-59991319 | Msa0129930:intron | 40.0% | |
| ! | AAGCTCCTAGATTTGGTTAG+GGG | - | chr1_3:59991308-59991327 | None:intergenic | 40.0% |
| CATTGGGACATCAAATTTGG+TGG | - | chr1_3:59991338-59991357 | None:intergenic | 40.0% | |
| GCACATTGGGACATCAAATT+TGG | - | chr1_3:59991341-59991360 | None:intergenic | 40.0% | |
| GGATCAAATGTATACGAGTG+TGG | - | chr1_3:59991578-59991597 | None:intergenic | 40.0% | |
| TCCCTATACCAGCATATTTG+TGG | + | chr1_3:59991595-59991614 | Msa0129930:intron | 40.0% | |
| GCCACAAATATGCTGGTATA+GGG | - | chr1_3:59991599-59991618 | None:intergenic | 40.0% | |
| AGCTAACTGCTATCGTCAAT+AGG | - | chr1_3:59991640-59991659 | None:intergenic | 40.0% | |
| CTAAATAGAACCCATAGCCA+TGG | + | chr1_3:59991913-59991932 | Msa0129930:intron | 40.0% | |
| ! | TTACTAACCTCTCCTTTTCC+TGG | - | chr1_3:59992243-59992262 | None:intergenic | 40.0% |
| CTTGGGGAAGGATATAGATA+TGG | + | chr1_3:59992405-59992424 | Msa0129930:CDS | 40.0% | |
| ! | GCTAATCAAGTTGTCTGTTG+AGG | + | chr1_3:59992432-59992451 | Msa0129930:CDS | 40.0% |
| ! | AATCAAGTTGTCTGTTGAGG+AGG | + | chr1_3:59992435-59992454 | Msa0129930:CDS | 40.0% |
| ! | ATCAAGTTGTCTGTTGAGGA+GGG | + | chr1_3:59992436-59992455 | Msa0129930:CDS | 40.0% |
| ACAAAACTTAGTCACCCATC+AGG | - | chr1_3:59992535-59992554 | None:intergenic | 40.0% | |
| CTCATGTGTTTATGAGGTTC+GGG | + | chr1_3:59992665-59992684 | Msa0129930:CDS | 40.0% | |
| !! | AGATGGGAGTGAAGTTTTGA+AGG | + | chr1_3:59993044-59993063 | Msa0129930:three_prime_UTR | 40.0% |
| ! | TGTGTCTAAAACGTGTCACG+TGG | - | chr1_3:59990097-59990116 | None:intergenic | 45.0% |
| GGAAAGACAGAGAGAAGTTG+AGG | - | chr1_3:59990126-59990145 | None:intergenic | 45.0% | |
| TGTCATGTCCTCGTCTTTAC+CGG | + | chr1_3:59990478-59990497 | Msa0129930:intron | 45.0% | |
| CAGATATGGATCATGTGCCT+CGG | + | chr1_3:59990785-59990804 | Msa0129930:intron | 45.0% | |
| !! | ATCCTCAAAGGAAGCATCTG+GGG | - | chr1_3:59990832-59990851 | None:intergenic | 45.0% |
| !! | GATCCTCAAAGGAAGCATCT+GGG | - | chr1_3:59990833-59990852 | None:intergenic | 45.0% |
| ATACCCTTGTGCACGCATAA+GGG | - | chr1_3:59990856-59990875 | None:intergenic | 45.0% | |
| TTAGGAAAGACGAAAAGGGC+AGG | - | chr1_3:59990889-59990908 | None:intergenic | 45.0% | |
| GGCCACAAATATGCTGGTAT+AGG | - | chr1_3:59991600-59991619 | None:intergenic | 45.0% | |
| AGCATTCTACTCTCTCCCTA+AGG | + | chr1_3:59991801-59991820 | Msa0129930:CDS | 45.0% | |
| AGTTTCACCAGGAAAAGGAG+AGG | + | chr1_3:59992233-59992252 | Msa0129930:CDS | 45.0% | |
| GTGCTTGCTTGATCTCTTAG+TGG | + | chr1_3:59992316-59992335 | Msa0129930:intron | 45.0% | |
| GGGTAAAGTTATTCGCCATG+AGG | + | chr1_3:59992456-59992475 | Msa0129930:CDS | 45.0% | |
| AAGTTATTCGCCATGAGGAC+TGG | + | chr1_3:59992461-59992480 | Msa0129930:CDS | 45.0% | |
| TGCGAGTCATTTCTGCAACT+CGG | - | chr1_3:59992627-59992646 | None:intergenic | 45.0% | |
| AGTTGCAGAAATGACTCGCA+GGG | + | chr1_3:59992627-59992646 | Msa0129930:CDS | 45.0% | |
| TGTGTTTATGAGGTTCGGGA+AGG | + | chr1_3:59992669-59992688 | Msa0129930:CDS | 45.0% | |
| !! | ATGTGTTGGTGGCGCCTTAT+TGG | - | chr1_3:59989979-59989998 | None:intergenic | 50.0% |
| TCCTCTTCTTTCTCTTCCCG+CGG | + | chr1_3:59989999-59990018 | Msa0129930:five_prime_UTR | 50.0% | |
| TGCAATGGATGCTGGTAAGG+AGG | + | chr1_3:59990154-59990173 | Msa0129930:intron | 50.0% | |
| GCAATGGATGCTGGTAAGGA+GGG | + | chr1_3:59990155-59990174 | Msa0129930:intron | 50.0% | |
| ! | ATAACGCACCGGTAAAGACG+AGG | - | chr1_3:59990489-59990508 | None:intergenic | 50.0% |
| CGTCTTTACCGGTGCGTTAT+AGG | + | chr1_3:59990489-59990508 | Msa0129930:intron | 50.0% | |
| GATTTCAAAATCGCGAGCCG+AGG | - | chr1_3:59990805-59990824 | None:intergenic | 50.0% | |
| !! | GGATCCTCAAAGGAAGCATC+TGG | - | chr1_3:59990834-59990853 | None:intergenic | 50.0% |
| ACGCATAAGGGGATCCTCAA+AGG | - | chr1_3:59990844-59990863 | None:intergenic | 50.0% | |
| ATCCCCTTATGCGTGCACAA+GGG | + | chr1_3:59990850-59990869 | Msa0129930:CDS | 50.0% | |
| TACCCTTGTGCACGCATAAG+GGG | - | chr1_3:59990855-59990874 | None:intergenic | 50.0% | |
| CATACCCTTGTGCACGCATA+AGG | - | chr1_3:59990857-59990876 | None:intergenic | 50.0% | |
| ACCGTAAAGCTGCCATTGCT+TGG | + | chr1_3:59992601-59992620 | Msa0129930:CDS | 50.0% | |
| GCCAAGCAATGGCAGCTTTA+CGG | - | chr1_3:59992605-59992624 | None:intergenic | 50.0% | |
| GAGTTGCAGAAATGACTCGC+AGG | + | chr1_3:59992626-59992645 | Msa0129930:CDS | 50.0% | |
| GTTGCAGAAATGACTCGCAG+GGG | + | chr1_3:59992628-59992647 | Msa0129930:CDS | 50.0% | |
| GACTAGATACTTGGCGTCGT+TGG | + | chr1_3:59992763-59992782 | Msa0129930:three_prime_UTR | 50.0% | |
| ACCGCGGGAAGAGAAAGAAG+AGG | - | chr1_3:59990003-59990022 | None:intergenic | 55.0% | |
| TGCCCCAGATGCTTCCTTTG+AGG | + | chr1_3:59990827-59990846 | Msa0129930:CDS | 55.0% | |
| GATCCCCTTATGCGTGCACA+AGG | + | chr1_3:59990849-59990868 | Msa0129930:CDS | 55.0% | |
| GCGGAAGGCCACAAATATGC+TGG | - | chr1_3:59991606-59991625 | None:intergenic | 55.0% | |
| TCTGCAACTCGGCCAAGCAA+TGG | - | chr1_3:59992616-59992635 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 59989971 | 59993159 | 59989971 | ID=Msa0129930;Name=Msa0129930 |
| chr1_3 | mRNA | 59989971 | 59993159 | 59989971 | ID=Msa0129930-mRNA-1;Parent=Msa0129930;Name=Msa0129930-mRNA-1;_AED=0.15;_eAED=0.15;_QI=118|1|1|1|1|1|7|454|200 |
| chr1_3 | exon | 59989971 | 59990167 | 59989971 | ID=Msa0129930-mRNA-1:exon:19687;Parent=Msa0129930-mRNA-1 |
| chr1_3 | exon | 59990254 | 59990338 | 59990254 | ID=Msa0129930-mRNA-1:exon:19688;Parent=Msa0129930-mRNA-1 |
| chr1_3 | exon | 59990788 | 59990871 | 59990788 | ID=Msa0129930-mRNA-1:exon:19689;Parent=Msa0129930-mRNA-1 |
| chr1_3 | exon | 59991783 | 59991822 | 59991783 | ID=Msa0129930-mRNA-1:exon:19690;Parent=Msa0129930-mRNA-1 |
| chr1_3 | exon | 59992186 | 59992254 | 59992186 | ID=Msa0129930-mRNA-1:exon:19691;Parent=Msa0129930-mRNA-1 |
| chr1_3 | exon | 59992373 | 59992482 | 59992373 | ID=Msa0129930-mRNA-1:exon:19692;Parent=Msa0129930-mRNA-1 |
| chr1_3 | exon | 59992570 | 59993159 | 59992570 | ID=Msa0129930-mRNA-1:exon:19693;Parent=Msa0129930-mRNA-1 |
| chr1_3 | five_prime_UTR | 59989971 | 59990088 | 59989971 | ID=Msa0129930-mRNA-1:five_prime_utr;Parent=Msa0129930-mRNA-1 |
| chr1_3 | CDS | 59990089 | 59990167 | 59990089 | ID=Msa0129930-mRNA-1:cds;Parent=Msa0129930-mRNA-1 |
| chr1_3 | CDS | 59990254 | 59990338 | 59990254 | ID=Msa0129930-mRNA-1:cds;Parent=Msa0129930-mRNA-1 |
| chr1_3 | CDS | 59990788 | 59990871 | 59990788 | ID=Msa0129930-mRNA-1:cds;Parent=Msa0129930-mRNA-1 |
| chr1_3 | CDS | 59991783 | 59991822 | 59991783 | ID=Msa0129930-mRNA-1:cds;Parent=Msa0129930-mRNA-1 |
| chr1_3 | CDS | 59992186 | 59992254 | 59992186 | ID=Msa0129930-mRNA-1:cds;Parent=Msa0129930-mRNA-1 |
| chr1_3 | CDS | 59992373 | 59992482 | 59992373 | ID=Msa0129930-mRNA-1:cds;Parent=Msa0129930-mRNA-1 |
| chr1_3 | CDS | 59992570 | 59992705 | 59992570 | ID=Msa0129930-mRNA-1:cds;Parent=Msa0129930-mRNA-1 |
| chr1_3 | three_prime_UTR | 59992706 | 59993159 | 59992706 | ID=Msa0129930-mRNA-1:three_prime_utr;Parent=Msa0129930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
