AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0756460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756460 MtrunA17_Chr5g0401471 96.868 447 14 0 1 447 1 447 0.0 893
Msa0756460 MtrunA17_Chr3g0127341 26.273 373 243 6 47 394 32 397 4.18e-31 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756460 AT2G23093.1 57.366 448 189 2 1 446 1 448 1.95e-175 499
Msa0756460 AT2G23093.2 56.693 381 164 1 67 446 1 381 2.48e-154 442
Msa0756460 AT3G49310.1 26.738 374 240 8 47 394 32 397 4.80e-31 124
Msa0756460 AT4G27720.1 27.446 368 245 8 47 394 32 397 5.00e-31 124
Msa0756460 AT1G64650.1 26.133 375 241 9 47 394 32 397 1.16e-29 120
Msa0756460 AT1G64650.2 25.217 345 222 9 77 394 21 356 8.22e-25 106

Find 134 sgRNAs with CRISPR-Local

Find 568 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTCCTTGTATTTGCTTA+TGG 0.135016 5_2:-10716104 Msa0756460:three_prime_UTR
AAAATTGAATCTTATAATTT+AGG 0.177458 5_2:-10715984 Msa0756460:three_prime_UTR
ATGTCTACCATTTCAAATTA+TGG 0.183708 5_2:-10716175 Msa0756460:three_prime_UTR
GTTGCTTCCCGCATTGCTTC+AGG 0.261910 5_2:+10716513 None:intergenic
CCAGCCAAATGTTTGCAAAT+TGG 0.264132 5_2:-10720594 Msa0756460:CDS
CTCTTTGCTGCTCCTTTCCT+TGG 0.267320 5_2:-10721567 Msa0756460:CDS
TTCAAATTATGGAAGACTAA+TGG 0.276075 5_2:-10716164 Msa0756460:three_prime_UTR
CTTATGATTCTACCGATATA+TGG 0.288284 5_2:-10716140 Msa0756460:three_prime_UTR
ATGCTGAACTGGACTGTTAT+TGG 0.288346 5_2:-10716289 Msa0756460:three_prime_UTR
TCCTTAAAAGATGTTGTTCC+TGG 0.294041 5_2:+10720469 None:intergenic
TGTTTATGCCAGTTGTTATA+AGG 0.297915 5_2:+10716491 None:intergenic
TCAAATTATGGAAGACTAAT+GGG 0.301722 5_2:-10716163 Msa0756460:three_prime_UTR
GTCGTTTATTCTCTCGCTTC+AGG 0.308569 5_2:-10724194 Msa0756460:intron
TTGGCTGATTGGTAATAATA+TGG 0.309041 5_2:-10720575 Msa0756460:CDS
GAAGGTCTATGGTCAGTGTT+TGG 0.318081 5_2:-10721666 Msa0756460:CDS
AAGGATTAGTCAGGTGTTAT+AGG 0.331289 5_2:+10715896 None:intergenic
AGCAGAATTGCAGCATTTGC+AGG 0.333144 5_2:+10718426 None:intergenic
AAGGTCTATGGTCAGTGTTT+GGG 0.339402 5_2:-10721665 Msa0756460:CDS
ATTTGTAATCCACAGATAAA+AGG 0.342774 5_2:-10719298 Msa0756460:intron
TGCTGAACTGGACTGTTATT+GGG 0.343647 5_2:-10716288 Msa0756460:three_prime_UTR
TACACTTATTTGTTGGTGTA+TGG 0.346030 5_2:-10720925 Msa0756460:CDS
AAGATGAATATGAAAATTGA+TGG 0.369464 5_2:+10724329 None:intergenic
TGCATCCTACACTTATTTGT+TGG 0.371176 5_2:-10720932 Msa0756460:CDS
AAATAACTACTCTTCCTAAT+AGG 0.374997 5_2:+10715705 None:intergenic
CTTACGGTGGGAAGTTTCTC+TGG 0.375342 5_2:-10716032 Msa0756460:three_prime_UTR
ACTCACTCAATGACACATAT+TGG 0.377170 5_2:-10720651 Msa0756460:CDS
CTAATGGCGTTTGGTGCGTT+TGG 0.378871 5_2:-10716566 Msa0756460:CDS
TCAGCCAATTTGCAAACATT+TGG 0.387709 5_2:+10720590 None:intergenic
TATTGTGGCCTATGACTATC+AGG 0.395025 5_2:-10718755 Msa0756460:intron
AATCCACAGATAAAAGGATA+TGG 0.398080 5_2:-10719292 Msa0756460:intron
TCTCAGTTGTGGAAGGTCTA+TGG 0.398191 5_2:-10721677 Msa0756460:intron
AGTATCTGCATACATCATAT+TGG 0.405206 5_2:-10718791 Msa0756460:CDS
GGTTATTGAAAGTTCCATTT+GGG 0.406069 5_2:-10724360 Msa0756460:CDS
TGTTGAAAATGCAACTCTAA+TGG 0.408255 5_2:-10716582 Msa0756460:CDS
GACTAGCATATGTCTCTCTA+TGG 0.409205 5_2:-10720870 Msa0756460:CDS
ATGATCATGTCTCTCTGTTA+TGG 0.412961 5_2:-10721603 Msa0756460:CDS
TCAATCCTAATTGCACTTCT+CGG 0.421978 5_2:+10718908 None:intergenic
TGGGGTTTCTGTCCATCCTC+TGG 0.424478 5_2:+10720489 None:intergenic
CTCATCGATCAAATCTATCT+AGG 0.428161 5_2:-10724465 Msa0756460:five_prime_UTR
TGTGCAGGAAATTGGAGTTC+TGG 0.428849 5_2:-10718643 Msa0756460:intron
TGGTTATTGAAAGTTCCATT+TGG 0.435947 5_2:-10724361 Msa0756460:CDS
GACGGCCGAGAAGTGCAATT+AGG 0.440184 5_2:-10718913 Msa0756460:CDS
ATCCCTCCACGCAATTCATT+AGG 0.444478 5_2:+10718468 None:intergenic
CCAATTTGCAAACATTTGGC+TGG 0.445903 5_2:+10720594 None:intergenic
TTGCTTCCCGCATTGCTTCA+GGG 0.446622 5_2:+10716514 None:intergenic
TTTGGTTTGTTGTTAGCAGC+TGG 0.450217 5_2:-10716548 Msa0756460:CDS
ATGTTTGCAAATTGGCTGAT+TGG 0.450918 5_2:-10720586 Msa0756460:CDS
TGAATTGCGTGGAGGGATGA+TGG 0.453095 5_2:-10718463 Msa0756460:CDS
TGATGGATTCAGTTCCCAAA+TGG 0.453810 5_2:+10724346 None:intergenic
CTCCTTGTATTTGCTTATGG+AGG 0.457982 5_2:-10716101 Msa0756460:three_prime_UTR
TTATTGGGGTACTTTCTGTA+AGG 0.459942 5_2:-10716273 Msa0756460:three_prime_UTR
TACCATCTCTCGCTAGATTG+AGG 0.461268 5_2:-10718578 Msa0756460:CDS
ACTGAATGAGAATATTGTAT+TGG 0.462102 5_2:+10720847 None:intergenic
GGAAGCAACCTTATAACAAC+TGG 0.462144 5_2:-10716499 Msa0756460:CDS
TTTGCAGGATTTGGTAGTAG+TGG 0.464947 5_2:-10716442 Msa0756460:three_prime_UTR
TCGGTCTCTCTCGTACACTC+TGG 0.466427 5_2:-10716416 Msa0756460:three_prime_UTR
TAGTCTTCCATAATTTGAAA+TGG 0.468502 5_2:+10716168 None:intergenic
GAATGGAAGTAACCATATAT+CGG 0.470375 5_2:+10716128 None:intergenic
TAACTGCACCTGATAGTCAT+AGG 0.472242 5_2:+10718747 None:intergenic
TAGCTTCACATGGATTTGAC+AGG 0.474347 5_2:-10721632 Msa0756460:CDS
TGTGCTTGTATTATACCAAA+AGG 0.474384 5_2:-10715780 Msa0756460:three_prime_UTR
TAGCGTCACTAATGTGAGTT+GGG 0.474918 5_2:-10715955 Msa0756460:three_prime_UTR
TCATAACTTGTTAGCATGCA+AGG 0.476886 5_2:+10715877 None:intergenic
AGCTTGTTTCATGCATGCGT+TGG 0.480624 5_2:-10718609 Msa0756460:CDS
AAACTATATAAAACGCCAAT+GGG 0.480732 5_2:-10724386 Msa0756460:exon
GGCTGCTCTCTTGTCTATTG+TGG 0.481167 5_2:-10718770 Msa0756460:CDS
TTAGCATGCAAGGATTAGTC+AGG 0.482075 5_2:+10715887 None:intergenic
CCTTAAAAGATGTTGTTCCT+GGG 0.487468 5_2:+10720470 None:intergenic
GAATTGCGTGGAGGGATGAT+GGG 0.487759 5_2:-10718462 Msa0756460:CDS
ACTTCCACAATCTTCGATCA+TGG 0.489570 5_2:-10724257 Msa0756460:CDS
ACTAGCCTTCACTTCTCCAT+TGG 0.490301 5_2:-10719251 Msa0756460:CDS
ACTACCAAATCCTGCAAAAG+AGG 0.492381 5_2:+10716447 None:intergenic
TGCATGCCCTGAAGCAATGC+GGG 0.495373 5_2:-10716520 Msa0756460:CDS
AACGGTTTAAAATGAAGAAT+AGG 0.499534 5_2:+10724535 None:intergenic
CCGCTATCACAATCTGCTTA+CGG 0.506670 5_2:-10716048 Msa0756460:three_prime_UTR
AAAGGATATGGCTGTTGACA+TGG 0.510167 5_2:-10719280 Msa0756460:CDS
CAAATACAAGGAGAAAAGAA+TGG 0.513543 5_2:+10716111 None:intergenic
ATATAAAACGCCAATGGGAG+TGG 0.515681 5_2:-10724381 Msa0756460:exon
AGGTCTATGGTCAGTGTTTG+GGG 0.515737 5_2:-10721664 Msa0756460:CDS
TCCTCAATTCTAAGTGATGA+TGG 0.517356 5_2:+10718820 None:intergenic
CGGTCTCTCTCGTACACTCT+GGG 0.524836 5_2:-10716415 Msa0756460:three_prime_UTR
CTTTCAATAACCACTCCCAT+TGG 0.528891 5_2:+10724371 None:intergenic
AATGCAACTCTAATGGCGTT+TGG 0.530190 5_2:-10716575 Msa0756460:CDS
AAAACTATATAAAACGCCAA+TGG 0.533569 5_2:-10724387 Msa0756460:exon
ATATGATGTATGCAGATACT+AGG 0.534600 5_2:+10718794 None:intergenic
CTTAAAAGATGTTGTTCCTG+GGG 0.539968 5_2:+10720471 None:intergenic
GCAGAATTGCAGCATTTGCA+GGG 0.540236 5_2:+10718427 None:intergenic
TTAGCGTCACTAATGTGAGT+TGG 0.541998 5_2:-10715956 Msa0756460:three_prime_UTR
TCAAAACTTGCAACCGTGGT+AGG 0.550096 5_2:-10715828 Msa0756460:intron
AACTTAGATGATGAAAATGC+AGG 0.550803 5_2:-10716380 Msa0756460:three_prime_UTR
GTTGCAATGGAGAAGCAAAA+CGG 0.553279 5_2:+10724517 None:intergenic
AAACGACGAGAAAGTTGCGT+TGG 0.557149 5_2:+10724210 None:intergenic
ACATGAAGTAGAAGAGAACT+TGG 0.561104 5_2:+10716194 None:intergenic
AAAGTCCAATGGAGAAGTGA+AGG 0.567421 5_2:+10719246 None:intergenic
ACCATCATCACTTAGAATTG+AGG 0.570229 5_2:-10718821 Msa0756460:CDS
ATCCTCCATAAGCAAATACA+AGG 0.570622 5_2:+10716099 None:intergenic
GCAGTAACTTCTCGTTGCAA+TGG 0.573932 5_2:+10724504 None:intergenic
CGATCAAATCTATCTAGGAT+CGG 0.580568 5_2:-10724460 Msa0756460:five_prime_UTR
GCTGAACTGGACTGTTATTG+GGG 0.580799 5_2:-10716287 Msa0756460:three_prime_UTR
TCTGAAAGCATGCCAAGGAA+AGG 0.587166 5_2:+10721555 None:intergenic
TTTGTCTGCAGCAAGGACAC+AGG 0.590139 5_2:-10720678 Msa0756460:intron
TGCTAAGAAGATGACAGCAA+AGG 0.590964 5_2:+10720534 None:intergenic
GATGGTCATTCAACATGAGA+AGG 0.592262 5_2:-10720813 Msa0756460:intron
TACCTAATGAATTGCGTGGA+GGG 0.592665 5_2:-10718470 Msa0756460:CDS
GATTCCATGATCGAAGATTG+TGG 0.594051 5_2:+10724253 None:intergenic
GTCCTCAATCTAGCGAGAGA+TGG 0.595439 5_2:+10718576 None:intergenic
ATGCTAGTCATGAAAATGCT+TGG 0.598980 5_2:+10720884 None:intergenic
GAGTATGAGTTAGCTTCACA+TGG 0.600211 5_2:-10721642 Msa0756460:CDS
AGCTTCACATGGATTTGACA+GGG 0.605174 5_2:-10721631 Msa0756460:CDS
CCGTAAGCAGATTGTGATAG+CGG 0.606373 5_2:+10716048 None:intergenic
TGATATCATACCACCACGGT+AGG 0.606528 5_2:+10719206 None:intergenic
CTACCAAATCCTGCAAAAGA+GGG 0.609921 5_2:+10716448 None:intergenic
CAGAATTGCAGCATTTGCAG+GGG 0.618123 5_2:+10718428 None:intergenic
AAGAAGATGACAGCAAAGGA+AGG 0.620765 5_2:+10720538 None:intergenic
ATACACCAACAAATAAGTGT+AGG 0.623461 5_2:+10720927 None:intergenic
TATGTACCTAATGAATTGCG+TGG 0.625396 5_2:-10718474 Msa0756460:CDS
GGTGTCAAAACTTGCAACCG+TGG 0.626915 5_2:-10715832 Msa0756460:three_prime_UTR
ATAGGTTATACTAATACACT+AGG 0.628174 5_2:+10715914 None:intergenic
AGAGGATGGACAGAAACCCC+AGG 0.628196 5_2:-10720487 Msa0756460:CDS
AAGGATATGGCTGTTGACAT+GGG 0.631029 5_2:-10719279 Msa0756460:CDS
TATCACAATCTGCTTACGGT+GGG 0.632031 5_2:-10716044 Msa0756460:three_prime_UTR
AAATCTATCTAGGATCGGAA+CGG 0.635399 5_2:-10724455 Msa0756460:five_prime_UTR
AATTGCGTGGAGGGATGATG+GGG 0.638126 5_2:-10718461 Msa0756460:CDS
GAAGTTCTGTTAGCAGCATG+AGG 0.641718 5_2:+10724275 None:intergenic
GATGACAGCAAAGGAAGGAA+CGG 0.645657 5_2:+10720543 None:intergenic
TCAAATCTGAAAGCATGCCA+AGG 0.645843 5_2:+10721550 None:intergenic
GATTTGGTAGTAGTGGATGT+CGG 0.650181 5_2:-10716435 Msa0756460:three_prime_UTR
CTATCACAATCTGCTTACGG+TGG 0.650370 5_2:-10716045 Msa0756460:three_prime_UTR
GATGCTTTGGGCACCTACCG+TGG 0.655346 5_2:-10719219 Msa0756460:CDS
AAATGCACATGAAGATCACA+AGG 0.672515 5_2:-10716009 Msa0756460:three_prime_UTR
GCTTTGGGCACCTACCGTGG+TGG 0.677361 5_2:-10719216 Msa0756460:intron
GTACCTAATGAATTGCGTGG+AGG 0.679478 5_2:-10718471 Msa0756460:CDS
GATGGTCCACTAGTGAGACA+CGG 0.724193 5_2:+10718838 None:intergenic
ATGCATGCCCTGAAGCAATG+CGG 0.738358 5_2:-10716521 Msa0756460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTGAAAATAGTAATTA+AGG - chr5_2:10717733-10717752 Msa0756460:intron 10.0%
!!! AATTTCCATTTTATTTTAAT+TGG - chr5_2:10717975-10717994 Msa0756460:intron 10.0%
!! TATATTGTTTCATAAATATA+TGG - chr5_2:10720203-10720222 Msa0756460:intron 10.0%
!! ATAAATATATGGTTAATATA+TGG - chr5_2:10720214-10720233 Msa0756460:intron 10.0%
!! AATAATAATAATAATACACT+AGG - chr5_2:10720624-10720643 Msa0756460:CDS 10.0%
!! TAATAAATACTAAATAACTT+AGG + chr5_2:10723094-10723113 None:intergenic 10.0%
!! AAAATTGAATCTTATAATTT+AGG - chr5_2:10724227-10724246 Msa0756460:CDS 10.0%
!!! TTTTGAATTTCTTTTGTTTA+TGG - chr5_2:10716400-10716419 Msa0756460:three_prime_UTR 15.0%
!!! GATTTTAAATTTCTTGTTTA+TGG - chr5_2:10716718-10716737 Msa0756460:intron 15.0%
!! TAATCAGAAAATAGTAATTA+AGG + chr5_2:10716961-10716980 None:intergenic 15.0%
!! AAAATGCTTAGAAATTAAAT+GGG + chr5_2:10717021-10717040 None:intergenic 15.0%
!! AAAAATGCTTAGAAATTAAA+TGG + chr5_2:10717022-10717041 None:intergenic 15.0%
!!! TTAATTATTTTATGTTGTAG+TGG - chr5_2:10718793-10718812 Msa0756460:CDS 15.0%
!! ATAAAATCATCCTTAAAATT+TGG + chr5_2:10718996-10719015 None:intergenic 15.0%
!!! TCATTTAAATTTTACATTGA+TGG + chr5_2:10720880-10720899 None:intergenic 15.0%
!!! TGAGTAAAGATAATTTTTTA+AGG - chr5_2:10721927-10721946 Msa0756460:intron 15.0%
!!! TTCAAATTTTTTAAAAGTGA+AGG - chr5_2:10722749-10722768 Msa0756460:intron 15.0%
!!! TTTTATTTTGTTTTCTCTTT+TGG - chr5_2:10723419-10723438 Msa0756460:intron 15.0%
!!! CAAAAAAAAAAAGGTTTTTA+TGG - chr5_2:10724358-10724377 Msa0756460:CDS 15.0%
!! AAGATGAATATGAAAATTGA+TGG + chr5_2:10715885-10715904 None:intergenic 20.0%
!! TGAGTTTATATAGTTTATAG+AGG - chr5_2:10716179-10716198 Msa0756460:three_prime_UTR 20.0%
!!! GTATTATTTTTGAATCTGTT+AGG - chr5_2:10716494-10716513 Msa0756460:CDS 20.0%
!!! TACTCAATTAAGTTTTAGAT+CGG - chr5_2:10716591-10716610 Msa0756460:CDS 20.0%
!!! TTCTTCAATTTAAAACAGTT+AGG - chr5_2:10716665-10716684 Msa0756460:intron 20.0%
!!! AAGAAATTTAAAATCCAATC+TGG + chr5_2:10716713-10716732 None:intergenic 20.0%
!!! TTTAAATTTCTTGTTTATGG+AGG - chr5_2:10716721-10716740 Msa0756460:intron 20.0%
!! AAAAATGCTTAGAAGTTAAA+TGG - chr5_2:10717661-10717680 Msa0756460:intron 20.0%
!! AAAATGCTTAGAAGTTAAAT+GGG - chr5_2:10717662-10717681 Msa0756460:intron 20.0%
!! TTTGGCCAATTAAAATAAAA+TGG + chr5_2:10717983-10718002 None:intergenic 20.0%
!! TCAAACTAAAATCAAAACTT+TGG + chr5_2:10718001-10718020 None:intergenic 20.0%
!! CGTCAAAAATTGAAAAATAT+AGG + chr5_2:10718116-10718135 None:intergenic 20.0%
!! TTTCTAAATCTGTTATGATT+TGG - chr5_2:10718223-10718242 Msa0756460:intron 20.0%
!!! TTTTCAATTGAGTTTTAGAT+CGG - chr5_2:10718266-10718285 Msa0756460:intron 20.0%
!!! TGTATATTGTTTTTCTAAAG+CGG - chr5_2:10718388-10718407 Msa0756460:intron 20.0%
!! CAAATACTGAAACATAATTA+GGG + chr5_2:10718734-10718753 None:intergenic 20.0%
!! ACAAATACTGAAACATAATT+AGG + chr5_2:10718735-10718754 None:intergenic 20.0%
!!! GATGTATTTTATGTTGATTT+TGG - chr5_2:10718899-10718918 Msa0756460:CDS 20.0%
!!! GATATTTGAGATGATTATTA+TGG - chr5_2:10718924-10718943 Msa0756460:intron 20.0%
!! AACATTGAAAAGTAATACAT+AGG + chr5_2:10719038-10719057 None:intergenic 20.0%
!!! AAAAACTTCAAAACTTCTTT+TGG + chr5_2:10719192-10719211 None:intergenic 20.0%
!! AAAGAAATAAAATCTGAATC+AGG + chr5_2:10719483-10719502 None:intergenic 20.0%
!!! TCCTTCTATACATATATTTT+TGG - chr5_2:10719775-10719794 Msa0756460:intron 20.0%
!! ACCAAAAATATATGTATAGA+AGG + chr5_2:10719779-10719798 None:intergenic 20.0%
!!! TTCTATACATATATTTTTGG+TGG - chr5_2:10719778-10719797 Msa0756460:intron 20.0%
!! AAATAGGTAGAAAATAATGA+AGG + chr5_2:10720082-10720101 None:intergenic 20.0%
!! ATTGAAAACCAAATATATCA+GGG + chr5_2:10720147-10720166 None:intergenic 20.0%
!! AATTGAAAACCAAATATATC+AGG + chr5_2:10720148-10720167 None:intergenic 20.0%
!! TTGTTCAACTGTATTAAATT+TGG - chr5_2:10720330-10720349 Msa0756460:intron 20.0%
!! TGTATTAAATTTGGATCTAA+TGG - chr5_2:10720339-10720358 Msa0756460:intron 20.0%
!!! ATATTTGAAACAATTTGTTC+AGG - chr5_2:10721079-10721098 Msa0756460:intron 20.0%
!! TATTCAAAAAGATTCAATCA+TGG + chr5_2:10721197-10721216 None:intergenic 20.0%
!!! AAAAGTCTCAAATATACTTT+TGG - chr5_2:10721499-10721518 Msa0756460:intron 20.0%
!!! AAACGTATAATTATCCATTT+TGG - chr5_2:10721869-10721888 Msa0756460:intron 20.0%
!! TTATCTTTACTCATATGATA+TGG + chr5_2:10721920-10721939 None:intergenic 20.0%
!! ATGTAAATAATTTATCAAGC+TGG - chr5_2:10722099-10722118 Msa0756460:intron 20.0%
!!! AATCCATAGAATGATATTTT+AGG - chr5_2:10722236-10722255 Msa0756460:intron 20.0%
!! AATCACTATTTCAAAAAAGA+TGG + chr5_2:10722339-10722358 None:intergenic 20.0%
!!! TCACATTTTAATTCATTCTT+TGG - chr5_2:10723979-10723998 Msa0756460:intron 20.0%
!! AGTTATGAGCAAAAAAAAAA+AGG - chr5_2:10724349-10724368 Msa0756460:CDS 20.0%
!!! TTTTTTTACATTACTCCTTT+TGG + chr5_2:10724449-10724468 None:intergenic 20.0%
!!! TTAATGTTTTTTCACCTATT+AGG - chr5_2:10724492-10724511 Msa0756460:five_prime_UTR 20.0%
!! AACGGTTTAAAATGAAGAAT+AGG + chr5_2:10715679-10715698 None:intergenic 25.0%
! AAAACTATATAAAACGCCAA+TGG - chr5_2:10715824-10715843 Msa0756460:intron 25.0%
! AAACTATATAAAACGCCAAT+GGG - chr5_2:10715825-10715844 Msa0756460:intron 25.0%
!! TTCTAGAAAATGTGATAGAT+CGG - chr5_2:10716074-10716093 Msa0756460:three_prime_UTR 25.0%
!! CGGAATCTTTTAATCATTTT+AGG - chr5_2:10716094-10716113 Msa0756460:three_prime_UTR 25.0%
! TTCTTCAACTTAATACTCAT+AGG - chr5_2:10716343-10716362 Msa0756460:three_prime_UTR 25.0%
!!! ATTTCTTTTGTTTATGGAGA+TGG - chr5_2:10716406-10716425 Msa0756460:three_prime_UTR 25.0%
!! TTTTTGAATCTGTTAGGTTT+TGG - chr5_2:10716500-10716519 Msa0756460:CDS 25.0%
!! ATGTTGAATTCAATTTTGCT+TGG - chr5_2:10716530-10716549 Msa0756460:CDS 25.0%
!! CTGAATGTTGAATTCAATTT+TGG - chr5_2:10716526-10716545 Msa0756460:CDS 25.0%
!! ATGATTTAGTCGTATTTTTC+AGG - chr5_2:10716633-10716652 Msa0756460:intron 25.0%
! AGAAAATAGTAATTAAGGAG+AGG + chr5_2:10716956-10716975 None:intergenic 25.0%
! AGTTTGTATCCTTTATATAG+TGG + chr5_2:10717140-10717159 None:intergenic 25.0%
!! TTTTCAGAAAGAAACTTACT+TGG + chr5_2:10717390-10717409 None:intergenic 25.0%
! TTATGTCTGAATAGTAAACA+AGG - chr5_2:10717350-10717369 Msa0756460:intron 25.0%
! TATGTCTGAATAGTAAACAA+GGG - chr5_2:10717351-10717370 Msa0756460:intron 25.0%
!! TTTTCAGAAAGAAACTTACT+TGG - chr5_2:10717390-10717409 Msa0756460:intron 25.0%
!! TTTGCACACTAAAAGAATTT+TGG - chr5_2:10717619-10717638 Msa0756460:intron 25.0%
!! TTGCACACTAAAAGAATTTT+GGG - chr5_2:10717620-10717639 Msa0756460:intron 25.0%
! TGAAAATAGTAATTAAGGAG+AGG - chr5_2:10717738-10717757 Msa0756460:intron 25.0%
!! CAATGTGTTAAAGATTTTGT+TGG - chr5_2:10717921-10717940 Msa0756460:intron 25.0%
!!! AGTTAAGTTTTATAGATCGA+AGG - chr5_2:10718466-10718485 Msa0756460:CDS 25.0%
! AGGAACTTCATACTATAATT+TGG + chr5_2:10718829-10718848 None:intergenic 25.0%
!!! GTATTTTATGTTGATTTTGG+TGG - chr5_2:10718902-10718921 Msa0756460:CDS 25.0%
!! TTTCAATGTTTCTATCACAT+TGG - chr5_2:10719048-10719067 Msa0756460:intron 25.0%
! ACTACTTTCTATATGTATAG+AGG - chr5_2:10719231-10719250 Msa0756460:CDS 25.0%
! ACTGAATGAGAATATTGTAT+TGG + chr5_2:10719367-10719386 None:intergenic 25.0%
! TACTAGAGACATAAATCAAA+CGG + chr5_2:10719982-10720001 None:intergenic 25.0%
! AAATAATGAAGGAAAGAAAC+AGG + chr5_2:10720071-10720090 None:intergenic 25.0%
! TAAAAGAATCTACTGGAAAA+TGG - chr5_2:10720276-10720295 Msa0756460:intron 25.0%
! ATAAAAAGATCACAAGCAAA+TGG + chr5_2:10720450-10720469 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr5_2:10720801-10720820 None:intergenic 25.0%
!! GTTTCTCTAATAGTTTTCTT+AGG - chr5_2:10720818-10720837 Msa0756460:CDS 25.0%
! ATTTGTAATCCACAGATAAA+AGG - chr5_2:10720913-10720932 Msa0756460:CDS 25.0%
! TACAGTGTCTTCAATTTATT+TGG - chr5_2:10721053-10721072 Msa0756460:intron 25.0%
! TCTGAATTAAGTTCATTTCT+AGG + chr5_2:10721122-10721141 None:intergenic 25.0%
! ACTTAATTCAGAAACCAATA+AGG - chr5_2:10721130-10721149 Msa0756460:intron 25.0%
! CTTAATTCAGAAACCAATAA+GGG - chr5_2:10721131-10721150 Msa0756460:intron 25.0%
!! ATTGATATTTGCATGCTTTT+TGG - chr5_2:10721321-10721340 Msa0756460:intron 25.0%
!!! TTGATATTTGCATGCTTTTT+GGG - chr5_2:10721322-10721341 Msa0756460:intron 25.0%
!!! TTAGTCTTTTCTGAAATTGT+AGG - chr5_2:10721846-10721865 Msa0756460:intron 25.0%
! TCATGTTAATAATGCCAAAA+TGG + chr5_2:10721886-10721905 None:intergenic 25.0%
!!! TTAAGGTTTTGAAGTTAGAA+TGG - chr5_2:10721944-10721963 Msa0756460:intron 25.0%
!! AAGAATTTTCTATTCAAGAG+TGG - chr5_2:10721992-10722011 Msa0756460:intron 25.0%
! GCACAATAAGAATTTAAACA+AGG + chr5_2:10722064-10722083 None:intergenic 25.0%
! CTATAAGCTAATAAACTTCA+GGG + chr5_2:10722176-10722195 None:intergenic 25.0%
!! CTGAAGTTTATTAGCTTATA+GGG - chr5_2:10722175-10722194 Msa0756460:intron 25.0%
! ACACCTAAAATATCATTCTA+TGG + chr5_2:10722242-10722261 None:intergenic 25.0%
! TTTAGGTGTAAAATACCTTT+AGG - chr5_2:10722253-10722272 Msa0756460:intron 25.0%
! AAAGGAATGAAGAAGTAAAA+GGG + chr5_2:10722564-10722583 None:intergenic 25.0%
! AAAAGGAATGAAGAAGTAAA+AGG + chr5_2:10722565-10722584 None:intergenic 25.0%
! TTAAAAATTGTATTGGAGGA+GGG + chr5_2:10722891-10722910 None:intergenic 25.0%
! GAACTTAAAAATTGTATTGG+AGG + chr5_2:10722895-10722914 None:intergenic 25.0%
! AGGGAACTTAAAAATTGTAT+TGG + chr5_2:10722898-10722917 None:intergenic 25.0%
!!! GTTTTTAATTACACCCTTTT+TGG + chr5_2:10723298-10723317 None:intergenic 25.0%
! ATGTCTACCATTTCAAATTA+TGG - chr5_2:10724036-10724055 Msa0756460:intron 25.0%
! TAGTCTTCCATAATTTGAAA+TGG + chr5_2:10724046-10724065 None:intergenic 25.0%
! TTCAAATTATGGAAGACTAA+TGG - chr5_2:10724047-10724066 Msa0756460:intron 25.0%
! TCAAATTATGGAAGACTAAT+GGG - chr5_2:10724048-10724067 Msa0756460:intron 25.0%
! ATAGGTTATACTAATACACT+AGG + chr5_2:10724300-10724319 None:intergenic 25.0%
! AAATAACTACTCTTCCTAAT+AGG + chr5_2:10724509-10724528 None:intergenic 25.0%
TGGTTATTGAAAGTTCCATT+TGG - chr5_2:10715850-10715869 Msa0756460:three_prime_UTR 30.0%
GGTTATTGAAAGTTCCATTT+GGG - chr5_2:10715851-10715870 Msa0756460:three_prime_UTR 30.0%
AACCTAACAGTTTCAAATTG+AGG + chr5_2:10716054-10716073 None:intergenic 30.0%
! TTCAATTTTACAGCACTGTT+AGG - chr5_2:10716129-10716148 Msa0756460:three_prime_UTR 30.0%
GAAAACAACGAATATTCATC+TGG + chr5_2:10716445-10716464 None:intergenic 30.0%
!!! TCAATTAAGTTTTAGATCGG+AGG - chr5_2:10716594-10716613 Msa0756460:CDS 30.0%
!! ATTGGATACGATTGCTATTT+AGG + chr5_2:10716823-10716842 None:intergenic 30.0%
!!! TTCTAAGCATTTTTCAAGAC+TGG - chr5_2:10717028-10717047 Msa0756460:intron 30.0%
TTGCACACTACAAGAATTAT+GGG + chr5_2:10717063-10717082 None:intergenic 30.0%
TTTGCACACTACAAGAATTA+TGG + chr5_2:10717064-10717083 None:intergenic 30.0%
CTGAACAAACCACTATATAA+AGG - chr5_2:10717128-10717147 Msa0756460:intron 30.0%
!!! CTTACTTGGAATTTTTGAGT+TGG - chr5_2:10717404-10717423 Msa0756460:intron 30.0%
TGTTTGTATCCTCTATATAG+TGG - chr5_2:10717541-10717560 Msa0756460:intron 30.0%
! CAGAATTGGTAATTGTGAAT+AGG - chr5_2:10717579-10717598 Msa0756460:intron 30.0%
TAGTGTGCAAATTCAATTCA+CGG + chr5_2:10717610-10717629 None:intergenic 30.0%
!!! TTCTAAGCATTTTTCAAGAC+TGG + chr5_2:10717028-10717047 None:intergenic 30.0%
GAATATTCAGCTTAGTTACA+CGG + chr5_2:10718334-10718353 None:intergenic 30.0%
!!! TTTCTAAAGCGGTTATGTTT+TGG - chr5_2:10718399-10718418 Msa0756460:intron 30.0%
! AATTTCTGTTTTCTCAGTTG+TGG - chr5_2:10718523-10718542 Msa0756460:intron 30.0%
TAGTAATTCTTCCAAAAGGA+AGG + chr5_2:10718849-10718868 None:intergenic 30.0%
GTGTTAGTAATTCTTCCAAA+AGG + chr5_2:10718853-10718872 None:intergenic 30.0%
! CTGTGCATTTCCAAATTTTA+AGG - chr5_2:10718983-10719002 Msa0756460:intron 30.0%
ATACACCAACAAATAAGTGT+AGG + chr5_2:10719287-10719306 None:intergenic 30.0%
! TACACTTATTTGTTGGTGTA+TGG - chr5_2:10719286-10719305 Msa0756460:CDS 30.0%
! AATTTTCTTCTGTTACCTTC+TGG - chr5_2:10719429-10719448 Msa0756460:intron 30.0%
CTGAATCAGGTTATTTAGTA+AGG + chr5_2:10719470-10719489 None:intergenic 30.0%
! TTGGCTGATTGGTAATAATA+TGG - chr5_2:10719636-10719655 Msa0756460:intron 30.0%
CTGATTTCCAAAGAAATGTT+GGG + chr5_2:10719907-10719926 None:intergenic 30.0%
TCTGATTTCCAAAGAAATGT+TGG + chr5_2:10719908-10719927 None:intergenic 30.0%
!! TTGTAATTCTAGAACGTTCA+TGG + chr5_2:10719949-10719968 None:intergenic 30.0%
!!! GCTTTTATAACATTGACTCA+TGG + chr5_2:10720049-10720068 None:intergenic 30.0%
! AATTAGGAAAAGGAAAGCAT+GGG + chr5_2:10720106-10720125 None:intergenic 30.0%
AAATATATCAGGGATAGCAA+GGG + chr5_2:10720137-10720156 None:intergenic 30.0%
TTTCAATTACTTTCCCTTGA+CGG - chr5_2:10720160-10720179 Msa0756460:intron 30.0%
CAACACAAGAAAGGAATTAA+TGG + chr5_2:10720244-10720263 None:intergenic 30.0%
AAATGGAAATACCATAAGAC+AGG - chr5_2:10720293-10720312 Msa0756460:intron 30.0%
! ACATTTTCATGCTGTCAAAA+AGG + chr5_2:10720376-10720395 None:intergenic 30.0%
ATAATACACTAGGTTAGATG+TGG - chr5_2:10720634-10720653 Msa0756460:CDS 30.0%
TCTTTGATAGAACATTATGG+CGG + chr5_2:10720754-10720773 None:intergenic 30.0%
TGGTCTTTGATAGAACATTA+TGG + chr5_2:10720757-10720776 None:intergenic 30.0%
GTTCTATCAAAGACCATATT+TGG - chr5_2:10720761-10720780 Msa0756460:intron 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr5_2:10720796-10720815 Msa0756460:intron 30.0%
AATCCACAGATAAAAGGATA+TGG - chr5_2:10720919-10720938 Msa0756460:CDS 30.0%
!! ATTTTGATATCATACCACCA+CGG + chr5_2:10721012-10721031 None:intergenic 30.0%
TTTGTTCAGGATCTTTGTAT+TGG - chr5_2:10721092-10721111 Msa0756460:intron 30.0%
TCAAAAAGATTCAATCATGG+TGG + chr5_2:10721194-10721213 None:intergenic 30.0%
ACTGAAGCTGAAAATATAAC+AGG + chr5_2:10721240-10721259 None:intergenic 30.0%
! CTCTTAATGCATGTGATTTT+AGG - chr5_2:10721273-10721292 Msa0756460:intron 30.0%
ATATGATGTATGCAGATACT+AGG + chr5_2:10721420-10721439 None:intergenic 30.0%
AGTATCTGCATACATCATAT+TGG - chr5_2:10721420-10721439 Msa0756460:intron 30.0%
! ATTTTTCATGTGCAGGAAAT+TGG - chr5_2:10721560-10721579 Msa0756460:CDS 30.0%
CTCTTTGTAATGAGATTACA+TGG + chr5_2:10721660-10721679 None:intergenic 30.0%
! CTTCTTTGTTTGCTCAATAA+TGG - chr5_2:10721685-10721704 Msa0756460:intron 30.0%
! ATTTGAATTTCCTTGTTTGC+AGG - chr5_2:10721714-10721733 Msa0756460:intron 30.0%
ACAACGGAAGAATTTAAACA+GGG + chr5_2:10722018-10722037 None:intergenic 30.0%
AACAACGGAAGAATTTAAAC+AGG + chr5_2:10722019-10722038 None:intergenic 30.0%
!!! TCTGCTACTTTTACTAACAA+CGG + chr5_2:10722034-10722053 None:intergenic 30.0%
CCTATAAGCTAATAAACTTC+AGG + chr5_2:10722177-10722196 None:intergenic 30.0%
! CCTGAAGTTTATTAGCTTAT+AGG - chr5_2:10722174-10722193 Msa0756460:intron 30.0%
GGTGATATTGCATACATATT+AGG - chr5_2:10722196-10722215 Msa0756460:intron 30.0%
ACATATTAGGTTCACAAAGA+AGG - chr5_2:10722209-10722228 Msa0756460:intron 30.0%
CATATTAGGTTCACAAAGAA+GGG - chr5_2:10722210-10722229 Msa0756460:intron 30.0%
! ATTGTACTGTAGGATGATTT+TGG + chr5_2:10722458-10722477 None:intergenic 30.0%
GAACTCAAAAATTGTACTGT+AGG + chr5_2:10722468-10722487 None:intergenic 30.0%
!!! TTTTGAGTTCCATCATTTTG+AGG - chr5_2:10722478-10722497 Msa0756460:intron 30.0%
!! TTTGAGTTCCATCATTTTGA+GGG - chr5_2:10722479-10722498 Msa0756460:intron 30.0%
CTTAAAAATTGTATTGGAGG+AGG + chr5_2:10722892-10722911 None:intergenic 30.0%
!!! TTTTTAAGTTCCCTCAAATG+AGG - chr5_2:10722904-10722923 Msa0756460:intron 30.0%
TGGAAGAAATAGAGGAAAAT+GGG + chr5_2:10722977-10722996 None:intergenic 30.0%
!!! AAAGCCTTAGTTGTTTTTTC+TGG - chr5_2:10723054-10723073 Msa0756460:intron 30.0%
TGTACCAGAAAAAACAACTA+AGG + chr5_2:10723061-10723080 None:intergenic 30.0%
!!! TAGTTGTTTTTTCTGGTACA+AGG - chr5_2:10723061-10723080 Msa0756460:intron 30.0%
GCAAACAAATATTGAAGAGA+TGG + chr5_2:10723232-10723251 None:intergenic 30.0%
TTTGGATTCTTTGATGTAAC+TGG - chr5_2:10723437-10723456 Msa0756460:intron 30.0%
TGTTGAAAATGCAACTCTAA+TGG - chr5_2:10723629-10723648 Msa0756460:intron 30.0%
TGTTTATGCCAGTTGTTATA+AGG + chr5_2:10723723-10723742 None:intergenic 30.0%
AACTTAGATGATGAAAATGC+AGG - chr5_2:10723831-10723850 Msa0756460:intron 30.0%
CTTATGATTCTACCGATATA+TGG - chr5_2:10724071-10724090 Msa0756460:intron 30.0%
GAATGGAAGTAACCATATAT+CGG + chr5_2:10724086-10724105 None:intergenic 30.0%
CAAATACAAGGAGAAAAGAA+TGG + chr5_2:10724103-10724122 None:intergenic 30.0%
TTTCTCCTTGTATTTGCTTA+TGG - chr5_2:10724107-10724126 Msa0756460:intron 30.0%
TGTGCTTGTATTATACCAAA+AGG - chr5_2:10724431-10724450 Msa0756460:five_prime_UTR 30.0%
CTCATCGATCAAATCTATCT+AGG - chr5_2:10715746-10715765 Msa0756460:three_prime_UTR 35.0%
! CGATCAAATCTATCTAGGAT+CGG - chr5_2:10715751-10715770 Msa0756460:three_prime_UTR 35.0%
! AAATCTATCTAGGATCGGAA+CGG - chr5_2:10715756-10715775 Msa0756460:three_prime_UTR 35.0%
! GTCCTCAATTTGAAACTGTT+AGG - chr5_2:10716049-10716068 Msa0756460:three_prime_UTR 35.0%
GGTTTAATCGAAAATGTGAG+AGG - chr5_2:10716150-10716169 Msa0756460:three_prime_UTR 35.0%
CTAGAATCTCTGTGTAACTT+AGG - chr5_2:10716208-10716227 Msa0756460:three_prime_UTR 35.0%
AAAATGTGAGAGATCCAGAT+TGG - chr5_2:10716696-10716715 Msa0756460:intron 35.0%
ACTCCTTCGATACATATAGA+CGG + chr5_2:10716859-10716878 None:intergenic 35.0%
AAAAAATTCCGATACGTTGC+CGG - chr5_2:10716912-10716931 Msa0756460:intron 35.0%
TAGTGTGCAAATTCAGTTCA+CGG - chr5_2:10717073-10717092 Msa0756460:intron 35.0%
! CAGAATTGGTAATTGTGAAC+AGG + chr5_2:10717104-10717123 None:intergenic 35.0%
GTTTGTTCAGACTTCAGAAT+TGG + chr5_2:10717118-10717137 None:intergenic 35.0%
!! TATCCACCTTTTGAAGGAAA+GGG - chr5_2:10717178-10717197 Msa0756460:intron 35.0%
! TTCTTCTTCTTTGACTGGTT+TGG + chr5_2:10717223-10717242 None:intergenic 35.0%
!!! CTTACTTGGAATTTTCGAGT+TGG + chr5_2:10717283-10717302 None:intergenic 35.0%
CTGAACAAACCACTATATAG+AGG + chr5_2:10717553-10717572 None:intergenic 35.0%
!! CTATATAGTGGTTTGTTCAG+AGG - chr5_2:10717553-10717572 Msa0756460:intron 35.0%
TTAAGGAGAGGAAAGCTAAA+CGG - chr5_2:10717750-10717769 Msa0756460:intron 35.0%
TCGTATCTGATACGTATTGA+AGG + chr5_2:10717852-10717871 None:intergenic 35.0%
ATACGATTCAGTGGCTATTT+AGG - chr5_2:10717866-10717885 Msa0756460:intron 35.0%
!!! ATTTTGTTGGCTTCTGAGTT+TGG - chr5_2:10717934-10717953 Msa0756460:intron 35.0%
! TTTTTGACGTATTGCCGTAT+CGG - chr5_2:10718127-10718146 Msa0756460:intron 35.0%
TAACAAAAACCTACGAAGCA+CGG + chr5_2:10718179-10718198 None:intergenic 35.0%
!!! TCAATTGAGTTTTAGATCGG+AGG - chr5_2:10718269-10718288 Msa0756460:intron 35.0%
ATGATCATGTCTCTCTGTTA+TGG - chr5_2:10718608-10718627 Msa0756460:CDS 35.0%
! AGTATGAAGTTCCTTCCTTT+TGG - chr5_2:10718835-10718854 Msa0756460:CDS 35.0%
ATTTGGAAATGCACAGTTCT+TGG + chr5_2:10718979-10718998 None:intergenic 35.0%
CATTGTTTAGGTAGTACTTC+TGG + chr5_2:10719148-10719167 None:intergenic 35.0%
!! CTTTTGGAAAATGCATGTCT+TGG + chr5_2:10719176-10719195 None:intergenic 35.0%
TGCATCCTACACTTATTTGT+TGG - chr5_2:10719279-10719298 Msa0756460:CDS 35.0%
ATGCTAGTCATGAAAATGCT+TGG + chr5_2:10719330-10719349 None:intergenic 35.0%
!!! TCTCATTCAGTTTTGAGACT+TGG - chr5_2:10719376-10719395 Msa0756460:intron 35.0%
!!! ATTCAGTTTTGAGACTTGGA+TGG - chr5_2:10719380-10719399 Msa0756460:intron 35.0%
ACTCACTCAATGACACATAT+TGG - chr5_2:10719560-10719579 Msa0756460:intron 35.0%
TCAGCCAATTTGCAAACATT+TGG + chr5_2:10719624-10719643 None:intergenic 35.0%
ATGTTTGCAAATTGGCTGAT+TGG - chr5_2:10719625-10719644 Msa0756460:intron 35.0%
CTTAAAAGATGTTGTTCCTG+GGG + chr5_2:10719743-10719762 None:intergenic 35.0%
CCTTAAAAGATGTTGTTCCT+GGG + chr5_2:10719744-10719763 None:intergenic 35.0%
TCCTTAAAAGATGTTGTTCC+TGG + chr5_2:10719745-10719764 None:intergenic 35.0%
TTCAGTACCCAACATTTCTT+TGG - chr5_2:10719897-10719916 Msa0756460:intron 35.0%
!! AATTTTGATGCCTTGTCTTC+AGG - chr5_2:10720006-10720025 Msa0756460:intron 35.0%
! AAAGGAAAGCATGGGTAAAT+AGG + chr5_2:10720098-10720117 None:intergenic 35.0%
CAATTAGGAAAAGGAAAGCA+TGG + chr5_2:10720107-10720126 None:intergenic 35.0%
GGAAGAGAACAATTAGGAAA+AGG + chr5_2:10720116-10720135 None:intergenic 35.0%
CAAATATATCAGGGATAGCA+AGG + chr5_2:10720138-10720157 None:intergenic 35.0%
! CTTGCTATCCCTGATATATT+TGG - chr5_2:10720136-10720155 Msa0756460:intron 35.0%
CACAAGAAAGGAATTAATGG+TGG + chr5_2:10720241-10720260 None:intergenic 35.0%
AACCTGCTAAAAGAATCTAC+TGG - chr5_2:10720269-10720288 Msa0756460:intron 35.0%
! TTCCAGTAGATTCTTTTAGC+AGG + chr5_2:10720274-10720293 None:intergenic 35.0%
CGAGTATATTTCCTGTCTTA+TGG + chr5_2:10720307-10720326 None:intergenic 35.0%
ACAAGATCATACTGTTGACA+AGG + chr5_2:10720483-10720502 None:intergenic 35.0%
TCTCTATGTTCAAACTGACA+TGG - chr5_2:10720562-10720581 Msa0756460:CDS 35.0%
! TGTTGTTGTTGTTGTTGTTG+TGG + chr5_2:10720688-10720707 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr5_2:10720777-10720796 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr5_2:10720789-10720808 None:intergenic 35.0%
GTGTTTCTCTAGGTTAAAAG+AGG + chr5_2:10720854-10720873 None:intergenic 35.0%
TTGATGGAATGTGTTTCTCT+AGG + chr5_2:10720864-10720883 None:intergenic 35.0%
!!! ACTTCTCCATTGGACTTTTT+TGG - chr5_2:10720970-10720989 Msa0756460:intron 35.0%
AAGCATCCAAAAAAGTCCAA+TGG + chr5_2:10720979-10720998 None:intergenic 35.0%
!!! TTGGACTTTTTTGGATGCTT+TGG - chr5_2:10720979-10720998 Msa0756460:intron 35.0%
!!! TGGACTTTTTTGGATGCTTT+GGG - chr5_2:10720980-10720999 Msa0756460:intron 35.0%
TCAATCCTAATTGCACTTCT+CGG + chr5_2:10721306-10721325 None:intergenic 35.0%
ACCATCATCACTTAGAATTG+AGG - chr5_2:10721390-10721409 Msa0756460:intron 35.0%
TCCTCAATTCTAAGTGATGA+TGG + chr5_2:10721394-10721413 None:intergenic 35.0%
! CTCATCAATTTTTCATGTGC+AGG - chr5_2:10721553-10721572 Msa0756460:CDS 35.0%
TATGTACCTAATGAATTGCG+TGG - chr5_2:10721737-10721756 Msa0756460:intron 35.0%
AATGGCATAATTGTTGAGAG+TGG - chr5_2:10721962-10721981 Msa0756460:intron 35.0%
ATGGCATAATTGTTGAGAGT+GGG - chr5_2:10721963-10721982 Msa0756460:intron 35.0%
TTTACATAGATGACTCTCGT+TGG + chr5_2:10722086-10722105 None:intergenic 35.0%
ATAAACTTCAGGGACAAGTT+GGG + chr5_2:10722166-10722185 None:intergenic 35.0%
AATAAACTTCAGGGACAAGT+TGG + chr5_2:10722167-10722186 None:intergenic 35.0%
! TACTGTAGGATGATTTTGGA+GGG + chr5_2:10722454-10722473 None:intergenic 35.0%
! TTGAGTTCCATCATTTTGAG+GGG - chr5_2:10722480-10722499 Msa0756460:intron 35.0%
TACAAATCCCCTCAAAATGA+TGG + chr5_2:10722490-10722509 None:intergenic 35.0%
TAAAAGGGATGAAGAGCTTT+GGG + chr5_2:10722549-10722568 None:intergenic 35.0%
!! TTAGGCTTTGTTTGTGAGTT+TGG - chr5_2:10722667-10722686 Msa0756460:intron 35.0%
GTGGAAAATATGAGGGAAAA+TGG - chr5_2:10722718-10722737 Msa0756460:intron 35.0%
AGAAATAGAGGAAAATGGGA+GGG + chr5_2:10722973-10722992 None:intergenic 35.0%
AAGAAATAGAGGAAAATGGG+AGG + chr5_2:10722974-10722993 None:intergenic 35.0%
GTGGAAGAAATAGAGGAAAA+TGG + chr5_2:10722978-10722997 None:intergenic 35.0%
!! TAATTCACTTTTGCTACCCT+TGG - chr5_2:10723185-10723204 Msa0756460:intron 35.0%
! TTTTGCTACCCTTGGAAAAA+AGG - chr5_2:10723193-10723212 Msa0756460:intron 35.0%
TTTGCTACCCTTGGAAAAAA+GGG - chr5_2:10723194-10723213 Msa0756460:intron 35.0%
!! ATTGAAGAGATGGATTACTC+TGG + chr5_2:10723222-10723241 None:intergenic 35.0%
ATCCAAACTCGATCCAAAAA+GGG - chr5_2:10723282-10723301 Msa0756460:intron 35.0%
TCCCAAATATGTTTGAGTCA+TGG - chr5_2:10723320-10723339 Msa0756460:intron 35.0%
CCCATGACTCAAACATATTT+GGG + chr5_2:10723324-10723343 None:intergenic 35.0%
CCCAAATATGTTTGAGTCAT+GGG - chr5_2:10723321-10723340 Msa0756460:intron 35.0%
TCCCATGACTCAAACATATT+TGG + chr5_2:10723325-10723344 None:intergenic 35.0%
GATTAGGATTGTTCTTCTCT+AGG - chr5_2:10723372-10723391 Msa0756460:intron 35.0%
! TTCTTTGATGTAACTGGTTC+AGG - chr5_2:10723443-10723462 Msa0756460:intron 35.0%
CTAAGAATGCATTAGAAACC+AGG + chr5_2:10723475-10723494 None:intergenic 35.0%
! AATAATACACCCTCTTTTGC+AGG - chr5_2:10723754-10723773 Msa0756460:intron 35.0%
! ACTTTTAGTGAATGCTGAAC+TGG - chr5_2:10723911-10723930 Msa0756460:intron 35.0%
! TTATTGGGGTACTTTCTGTA+AGG - chr5_2:10723938-10723957 Msa0756460:intron 35.0%
ACATGAAGTAGAAGAGAACT+TGG + chr5_2:10724020-10724039 None:intergenic 35.0%
ATCCTCCATAAGCAAATACA+AGG + chr5_2:10724115-10724134 None:intergenic 35.0%
AAATGCACATGAAGATCACA+AGG - chr5_2:10724202-10724221 Msa0756460:CDS 35.0%
!! AAGGATTAGTCAGGTGTTAT+AGG + chr5_2:10724318-10724337 None:intergenic 35.0%
!! TCATAACTTGTTAGCATGCA+AGG + chr5_2:10724337-10724356 None:intergenic 35.0%
AAAAACTTGCATACCTACCA+CGG + chr5_2:10724399-10724418 None:intergenic 35.0%
GTTGCAATGGAGAAGCAAAA+CGG + chr5_2:10715697-10715716 None:intergenic 40.0%
ATATAAAACGCCAATGGGAG+TGG - chr5_2:10715830-10715849 Msa0756460:three_prime_UTR 40.0%
CTTTCAATAACCACTCCCAT+TGG + chr5_2:10715843-10715862 None:intergenic 40.0%
!! TGATGGATTCAGTTCCCAAA+TGG + chr5_2:10715868-10715887 None:intergenic 40.0%
ACTTCCACAATCTTCGATCA+TGG - chr5_2:10715954-10715973 Msa0756460:three_prime_UTR 40.0%
GATTCCATGATCGAAGATTG+TGG + chr5_2:10715961-10715980 None:intergenic 40.0%
!! CGATTGCTATTTAGGCGTAT+CGG + chr5_2:10716815-10716834 None:intergenic 40.0%
GATACATATAGACGGCGTAT+CGG + chr5_2:10716851-10716870 None:intergenic 40.0%
!! CTAGAGTATCCACCTTTTGA+AGG - chr5_2:10717172-10717191 Msa0756460:intron 40.0%
!! GTATCCACCTTTTGAAGGAA+AGG - chr5_2:10717177-10717196 Msa0756460:intron 40.0%
!! TCTTTGACTGGTTTGGATGA+AGG + chr5_2:10717216-10717235 None:intergenic 40.0%
CTGAGTTCTTCTTCTTTGAC+TGG + chr5_2:10717228-10717247 None:intergenic 40.0%
AAGATGATCATCGTCCTTGT+TGG - chr5_2:10717325-10717344 Msa0756460:intron 40.0%
AGATGATCATCGTCCTTGTT+GGG - chr5_2:10717326-10717345 Msa0756460:intron 40.0%
ATTCAGACATAAGCCCAACA+AGG + chr5_2:10717342-10717361 None:intergenic 40.0%
TTCTTCCAAACCAGTCAAAG+AGG + chr5_2:10717469-10717488 None:intergenic 40.0%
!! TCTTTGACTGGTTTGGAAGA+AGG - chr5_2:10717468-10717487 Msa0756460:intron 40.0%
! ACTAGAGTATCCACCTTTGA+AGG + chr5_2:10717506-10717525 None:intergenic 40.0%
TTGTTCAGAGGCTTCAGAAT+TGG - chr5_2:10717565-10717584 Msa0756460:intron 40.0%
ACGTATCAGATACGATTCAG+TGG - chr5_2:10717857-10717876 Msa0756460:intron 40.0%
CTGAGTTTGGTCTATGACAA+CGG - chr5_2:10717947-10717966 Msa0756460:intron 40.0%
TATCGGATACGTAACCGATA+CGG + chr5_2:10718144-10718163 None:intergenic 40.0%
! TCTGTTTTCTCAGTTGTGGA+AGG - chr5_2:10718527-10718546 Msa0756460:intron 40.0%
AAGGTCTATGGTCAGTGTTT+GGG - chr5_2:10718546-10718565 Msa0756460:intron 40.0%
! GAGTATGAGTTAGCTTCACA+TGG - chr5_2:10718569-10718588 Msa0756460:intron 40.0%
TAGCTTCACATGGATTTGAC+AGG - chr5_2:10718579-10718598 Msa0756460:CDS 40.0%
AGCTTCACATGGATTTGACA+GGG - chr5_2:10718580-10718599 Msa0756460:CDS 40.0%
! TCAAATCTGAAAGCATGCCA+AGG + chr5_2:10718664-10718683 None:intergenic 40.0%
GTGTGATTTGAACTTGAAGC+AGG - chr5_2:10719088-10719107 Msa0756460:intron 40.0%
GTCTTGGTTGTGCATTGTTT+AGG + chr5_2:10719160-10719179 None:intergenic 40.0%
GACTAGCATATGTCTCTCTA+TGG - chr5_2:10719341-10719360 Msa0756460:intron 40.0%
GATGGTCATTCAACATGAGA+AGG - chr5_2:10719398-10719417 Msa0756460:intron 40.0%
! TGTGTATTTTGTCTGCAGCA+AGG - chr5_2:10719526-10719545 Msa0756460:intron 40.0%
CCAATTTGCAAACATTTGGC+TGG + chr5_2:10719620-10719639 None:intergenic 40.0%
CCAGCCAAATGTTTGCAAAT+TGG - chr5_2:10719617-10719636 Msa0756460:intron 40.0%
AAGAAGATGACAGCAAAGGA+AGG + chr5_2:10719676-10719695 None:intergenic 40.0%
TGCTAAGAAGATGACAGCAA+AGG + chr5_2:10719680-10719699 None:intergenic 40.0%
! CCCAGGAACAACATCTTTTA+AGG - chr5_2:10719741-10719760 Msa0756460:intron 40.0%
! TAAGCTCACATGCTTTTCTC+AGG - chr5_2:10719801-10719820 Msa0756460:intron 40.0%
CTATACATGACCTGAAGACA+AGG + chr5_2:10720019-10720038 None:intergenic 40.0%
AGCAAGGGAAGAGAACAATT+AGG + chr5_2:10720122-10720141 None:intergenic 40.0%
TGCAAAGCAAAAACCGTCAA+GGG + chr5_2:10720176-10720195 None:intergenic 40.0%
ATGCAAAGCAAAAACCGTCA+AGG + chr5_2:10720177-10720196 None:intergenic 40.0%
GGTTTCTTGCAACACAAGAA+AGG + chr5_2:10720253-10720272 None:intergenic 40.0%
CAAGCTGTATTAGACCTGAA+TGG - chr5_2:10720523-10720542 Msa0756460:CDS 40.0%
GACTTTATCATGCACCATTC+AGG + chr5_2:10720540-10720559 None:intergenic 40.0%
GGTTAGATGTGGAAAAGAGT+TGG - chr5_2:10720645-10720664 Msa0756460:CDS 40.0%
CTCTAGGTTAAAAGAGGTAG+AGG + chr5_2:10720848-10720867 None:intergenic 40.0%
! CAGCCATATCCTTTTATCTG+TGG + chr5_2:10720925-10720944 None:intergenic 40.0%
AAAGGATATGGCTGTTGACA+TGG - chr5_2:10720931-10720950 Msa0756460:CDS 40.0%
AAGGATATGGCTGTTGACAT+GGG - chr5_2:10720932-10720951 Msa0756460:CDS 40.0%
AAAGTCCAATGGAGAAGTGA+AGG + chr5_2:10720968-10720987 None:intergenic 40.0%
! TGCATGTGATTTTAGGCTGA+CGG - chr5_2:10721280-10721299 Msa0756460:intron 40.0%
TATTGTGGCCTATGACTATC+AGG - chr5_2:10721456-10721475 Msa0756460:intron 40.0%
TAACTGCACCTGATAGTCAT+AGG + chr5_2:10721467-10721486 None:intergenic 40.0%
TAGGTACATACCTGCAAACA+AGG + chr5_2:10721727-10721746 None:intergenic 40.0%
TACCTAATGAATTGCGTGGA+GGG - chr5_2:10721741-10721760 Msa0756460:intron 40.0%
!! TATGGCCATTTTCAAAGCAG+TGG + chr5_2:10722128-10722147 None:intergenic 40.0%
GGGGGCAATCAAAAAAGTTA+TGG + chr5_2:10722146-10722165 None:intergenic 40.0%
TAAACTTCAGGGACAAGTTG+GGG + chr5_2:10722165-10722184 None:intergenic 40.0%
ATACCTTTAGGCTCTGTTTG+CGG - chr5_2:10722265-10722284 Msa0756460:intron 40.0%
! GTACTGTAGGATGATTTTGG+AGG + chr5_2:10722455-10722474 None:intergenic 40.0%
GTAAAAGGGATGAAGAGCTT+TGG + chr5_2:10722550-10722569 None:intergenic 40.0%
TAAAGCTCTGTTTGCGAGTT+TGG + chr5_2:10722615-10722634 None:intergenic 40.0%
AACTCGCAAACAGAGCTTTA+AGG - chr5_2:10722615-10722634 Msa0756460:intron 40.0%
! ACTCGCAAACAGAGCTTTAA+GGG - chr5_2:10722616-10722635 Msa0756460:intron 40.0%
!! GCTTTGTTTGTGAGTTTGGA+GGG - chr5_2:10722671-10722690 Msa0756460:intron 40.0%
! CTTTGTTTGTGAGTTTGGAG+GGG - chr5_2:10722672-10722691 Msa0756460:intron 40.0%
TTTGAGGGGTGGAAAATATG+AGG - chr5_2:10722710-10722729 Msa0756460:intron 40.0%
TTGAGGGGTGGAAAATATGA+GGG - chr5_2:10722711-10722730 Msa0756460:intron 40.0%
! TTGTATTGGAGGAGGGTTTT+GGG + chr5_2:10722884-10722903 None:intergenic 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG + chr5_2:10722885-10722904 None:intergenic 40.0%
TTAAGTTCCCTCAAATGAGG+AGG - chr5_2:10722907-10722926 Msa0756460:intron 40.0%
TAAGTTCCCTCAAATGAGGA+GGG - chr5_2:10722908-10722927 Msa0756460:intron 40.0%
ACTAAACCCTCCTCATTTGA+GGG + chr5_2:10722917-10722936 None:intergenic 40.0%
TACTAAACCCTCCTCATTTG+AGG + chr5_2:10722918-10722937 None:intergenic 40.0%
GAAATAGAGGAAAATGGGAG+GGG + chr5_2:10722972-10722991 None:intergenic 40.0%
TGAGCAAGTGGAAGAAATAG+AGG + chr5_2:10722985-10723004 None:intergenic 40.0%
GGAAAAAAGGAATGAGCAAG+TGG + chr5_2:10722997-10723016 None:intergenic 40.0%
!! TAAGGCTTTGTTTGCGAGTT+TGG + chr5_2:10723043-10723062 None:intergenic 40.0%
!!! TCTGGTACCCTTTTTTCCAA+GGG + chr5_2:10723204-10723223 None:intergenic 40.0%
CATCCAAACTCGATCCAAAA+AGG - chr5_2:10723281-10723300 Msa0756460:intron 40.0%
TGTTTCTTTCTCTCCTTGAC+AGG - chr5_2:10723345-10723364 Msa0756460:intron 40.0%
GTTTCTTTCTCTCCTTGACA+GGG - chr5_2:10723346-10723365 Msa0756460:intron 40.0%
ATCCTAATCTATCCCTGTCA+AGG + chr5_2:10723361-10723380 None:intergenic 40.0%
ATGCATTAGAAACCAGGAGA+TGG + chr5_2:10723469-10723488 None:intergenic 40.0%
AACTTCCTTTCTACTGTTGC+AGG - chr5_2:10723590-10723609 Msa0756460:intron 40.0%
ACTTCCTTTCTACTGTTGCA+GGG - chr5_2:10723591-10723610 Msa0756460:intron 40.0%
AATGCAACTCTAATGGCGTT+TGG - chr5_2:10723636-10723655 Msa0756460:intron 40.0%
!! TTTGGTTTGTTGTTAGCAGC+TGG - chr5_2:10723663-10723682 Msa0756460:intron 40.0%
GGAAGCAACCTTATAACAAC+TGG - chr5_2:10723712-10723731 Msa0756460:intron 40.0%
CTACCAAATCCTGCAAAAGA+GGG + chr5_2:10723766-10723785 None:intergenic 40.0%
ACTACCAAATCCTGCAAAAG+AGG + chr5_2:10723767-10723786 None:intergenic 40.0%
! TTTGCAGGATTTGGTAGTAG+TGG - chr5_2:10723769-10723788 Msa0756460:intron 40.0%
!! GATTTGGTAGTAGTGGATGT+CGG - chr5_2:10723776-10723795 Msa0756460:intron 40.0%
ATGCTGAACTGGACTGTTAT+TGG - chr5_2:10723922-10723941 Msa0756460:intron 40.0%
TGCTGAACTGGACTGTTATT+GGG - chr5_2:10723923-10723942 Msa0756460:intron 40.0%
CTCCTTGTATTTGCTTATGG+AGG - chr5_2:10724110-10724129 Msa0756460:intron 40.0%
TATCACAATCTGCTTACGGT+GGG - chr5_2:10724167-10724186 Msa0756460:intron 40.0%
TTAGCGTCACTAATGTGAGT+TGG - chr5_2:10724255-10724274 Msa0756460:CDS 40.0%
TAGCGTCACTAATGTGAGTT+GGG - chr5_2:10724256-10724275 Msa0756460:CDS 40.0%
!! TTAGCATGCAAGGATTAGTC+AGG + chr5_2:10724327-10724346 None:intergenic 40.0%
GCAGTAACTTCTCGTTGCAA+TGG + chr5_2:10715710-10715729 None:intergenic 45.0%
GAAGTTCTGTTAGCAGCATG+AGG + chr5_2:10715939-10715958 None:intergenic 45.0%
AAACGACGAGAAAGTTGCGT+TGG + chr5_2:10716004-10716023 None:intergenic 45.0%
GTCGTTTATTCTCTCGCTTC+AGG - chr5_2:10716017-10716036 Msa0756460:three_prime_UTR 45.0%
ACGCCGTCTATATGTATCGA+AGG - chr5_2:10716853-10716872 Msa0756460:intron 45.0%
CTACTGCCCTTTCCTTCAAA+AGG + chr5_2:10717187-10717206 None:intergenic 45.0%
! TTCTGCCTCTTTGACTGGTT+TGG - chr5_2:10717461-10717480 Msa0756460:intron 45.0%
TCTCAGTTGTGGAAGGTCTA+TGG - chr5_2:10718534-10718553 Msa0756460:intron 45.0%
GAAGGTCTATGGTCAGTGTT+TGG - chr5_2:10718545-10718564 Msa0756460:intron 45.0%
AGGTCTATGGTCAGTGTTTG+GGG - chr5_2:10718547-10718566 Msa0756460:intron 45.0%
! TCTGAAAGCATGCCAAGGAA+AGG + chr5_2:10718659-10718678 None:intergenic 45.0%
GGAAATGCACAGTTCTTGGA+AGG + chr5_2:10718975-10718994 None:intergenic 45.0%
AAGACTTGAGCTCTTCCAGA+AGG + chr5_2:10719447-10719466 None:intergenic 45.0%
GATGACAGCAAAGGAAGGAA+CGG + chr5_2:10719671-10719690 None:intergenic 45.0%
! TGCTTCATTTTGCTCACCAG+AGG - chr5_2:10719706-10719725 Msa0756460:intron 45.0%
! TCATTTTGCTCACCAGAGGA+TGG - chr5_2:10719710-10719729 Msa0756460:intron 45.0%
AACGCCTTATCCCACTAAGT+GGG - chr5_2:10720707-10720726 Msa0756460:intron 45.0%
!! ACTAGCCTTCACTTCTCCAT+TGG - chr5_2:10720960-10720979 Msa0756460:CDS 45.0%
TGATATCATACCACCACGGT+AGG + chr5_2:10721008-10721027 None:intergenic 45.0%
!! TTGCATGCTTTTTGGGCTCA+AGG - chr5_2:10721329-10721348 Msa0756460:intron 45.0%
!! TTTTTGGGCTCAAGGATGCT+AGG - chr5_2:10721337-10721356 Msa0756460:intron 45.0%
! GTTTTTCCGTGTCTCACTAG+TGG - chr5_2:10721367-10721386 Msa0756460:intron 45.0%
TGTGCAGGAAATTGGAGTTC+TGG - chr5_2:10721568-10721587 Msa0756460:CDS 45.0%
! AGCTTGTTTCATGCATGCGT+TGG - chr5_2:10721602-10721621 Msa0756460:CDS 45.0%
TACCATCTCTCGCTAGATTG+AGG - chr5_2:10721633-10721652 Msa0756460:CDS 45.0%
GTACCTAATGAATTGCGTGG+AGG - chr5_2:10721740-10721759 Msa0756460:intron 45.0%
ATCCCTCCACGCAATTCATT+AGG + chr5_2:10721746-10721765 None:intergenic 45.0%
CAGAATTGCAGCATTTGCAG+GGG + chr5_2:10721786-10721805 None:intergenic 45.0%
GCAGAATTGCAGCATTTGCA+GGG + chr5_2:10721787-10721806 None:intergenic 45.0%
AGCAGAATTGCAGCATTTGC+AGG + chr5_2:10721788-10721807 None:intergenic 45.0%
GCATAATTGTTGAGAGTGGG+TGG - chr5_2:10721966-10721985 Msa0756460:intron 45.0%
! AAACTTCAGGGACAAGTTGG+GGG + chr5_2:10722164-10722183 None:intergenic 45.0%
TACCTTTAGGCTCTGTTTGC+GGG - chr5_2:10722266-10722285 Msa0756460:intron 45.0%
TTTGGGAGGGGATGAATTTG+GGG + chr5_2:10722532-10722551 None:intergenic 45.0%
! CTTTGGGAGGGGATGAATTT+GGG + chr5_2:10722533-10722552 None:intergenic 45.0%
!! AGGAAAGGGCTTTGGGTAAA+AGG + chr5_2:10722582-10722601 None:intergenic 45.0%
!! ACAGAGCTTTAAGGGAGTTG+TGG - chr5_2:10722624-10722643 Msa0756460:intron 45.0%
CCTAAGAAACAGAACCCTTG+CGG + chr5_2:10722652-10722671 None:intergenic 45.0%
!! GGCTTTGTTTGTGAGTTTGG+AGG - chr5_2:10722670-10722689 Msa0756460:intron 45.0%
! TGTATTGGAGGAGGGTTTTG+GGG + chr5_2:10722883-10722902 None:intergenic 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG + chr5_2:10723038-10723057 None:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG + chr5_2:10723039-10723058 None:intergenic 45.0%
!!! CTCTGGTACCCTTTTTTCCA+AGG + chr5_2:10723205-10723224 None:intergenic 45.0%
! CACCCTTTTTGGATCGAGTT+TGG + chr5_2:10723287-10723306 None:intergenic 45.0%
CTCCTTGACAGGGATAGATT+AGG - chr5_2:10723356-10723375 Msa0756460:intron 45.0%
AAACCAAAAGCCTACGCACT+AGG + chr5_2:10723402-10723421 None:intergenic 45.0%
! ACACCCTCTTTTGCAGGATT+TGG - chr5_2:10723760-10723779 Msa0756460:intron 45.0%
GCTGAACTGGACTGTTATTG+GGG - chr5_2:10723924-10723943 Msa0756460:intron 45.0%
CCGTAAGCAGATTGTGATAG+CGG + chr5_2:10724166-10724185 None:intergenic 45.0%
CCGCTATCACAATCTGCTTA+CGG - chr5_2:10724163-10724182 Msa0756460:intron 45.0%
CTATCACAATCTGCTTACGG+TGG - chr5_2:10724166-10724185 Msa0756460:intron 45.0%
TCAAAACTTGCAACCGTGGT+AGG - chr5_2:10724383-10724402 Msa0756460:exon 45.0%
GAAAGCTTATCGCAGTGTGC+CGG + chr5_2:10716934-10716953 None:intergenic 50.0%
CTGCCCTTTCCTTCAAAAGG+TGG + chr5_2:10717184-10717203 None:intergenic 50.0%
CCAGTCAAAGAGGCAGAACT+CGG + chr5_2:10717459-10717478 None:intergenic 50.0%
GAGTGCTCTACTGCCTTCAA+AGG - chr5_2:10717490-10717509 Msa0756460:intron 50.0%
TGCTCTACTGCCTTCAAAGG+TGG - chr5_2:10717493-10717512 Msa0756460:intron 50.0%
ACGGTCAGACGTATCTGAGT+CGG - chr5_2:10717769-10717788 Msa0756460:intron 50.0%
CACGGACACGATACGTGTAT+CGG + chr5_2:10718161-10718180 None:intergenic 50.0%
CTCTTTGCTGCTCCTTTCCT+TGG - chr5_2:10718644-10718663 Msa0756460:intron 50.0%
TTTGTCTGCAGCAAGGACAC+AGG - chr5_2:10719533-10719552 Msa0756460:intron 50.0%
CAACGCCTTATCCCACTAAG+TGG - chr5_2:10720706-10720725 Msa0756460:intron 50.0%
ACGCCTTATCCCACTAAGTG+GGG - chr5_2:10720708-10720727 Msa0756460:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr5_2:10720712-10720731 Msa0756460:intron 50.0%
GATGGTCCACTAGTGAGACA+CGG + chr5_2:10721376-10721395 None:intergenic 50.0%
GGCTGCTCTCTTGTCTATTG+TGG - chr5_2:10721441-10721460 Msa0756460:intron 50.0%
GTCCTCAATCTAGCGAGAGA+TGG + chr5_2:10721638-10721657 None:intergenic 50.0%
TGAATTGCGTGGAGGGATGA+TGG - chr5_2:10721748-10721767 Msa0756460:intron 50.0%
GAATTGCGTGGAGGGATGAT+GGG - chr5_2:10721749-10721768 Msa0756460:intron 50.0%
AATTGCGTGGAGGGATGATG+GGG - chr5_2:10721750-10721769 Msa0756460:intron 50.0%
!! GGCTGCCACTGCTTTGAAAA+TGG - chr5_2:10722120-10722139 Msa0756460:intron 50.0%
ATCCCGCAAACAGAGCCTAA+AGG + chr5_2:10722271-10722290 None:intergenic 50.0%
TTAGGCTCTGTTTGCGGGAT+TGG - chr5_2:10722271-10722290 Msa0756460:intron 50.0%
TAGGCTCTGTTTGCGGGATT+GGG - chr5_2:10722272-10722291 Msa0756460:intron 50.0%
TTGGGAGGGGATGAATTTGG+GGG + chr5_2:10722531-10722550 None:intergenic 50.0%
!! GCTTTGGGAGGGGATGAATT+TGG + chr5_2:10722534-10722553 None:intergenic 50.0%
!! AGGGATGAAGAGCTTTGGGA+GGG + chr5_2:10722545-10722564 None:intergenic 50.0%
!! AAGGGATGAAGAGCTTTGGG+AGG + chr5_2:10722546-10722565 None:intergenic 50.0%
CTCTGTTTGCGAGTTTGGAG+GGG + chr5_2:10722610-10722629 None:intergenic 50.0%
GCTCTGTTTGCGAGTTTGGA+GGG + chr5_2:10722611-10722630 None:intergenic 50.0%
AGCTCTGTTTGCGAGTTTGG+AGG + chr5_2:10722612-10722631 None:intergenic 50.0%
! CCGCAAGGGTTCTGTTTCTT+AGG - chr5_2:10722649-10722668 Msa0756460:intron 50.0%
TGTTTGTGAGTTTGGAGGGG+AGG - chr5_2:10722675-10722694 Msa0756460:intron 50.0%
GTTTGTGAGTTTGGAGGGGA+GGG - chr5_2:10722676-10722695 Msa0756460:intron 50.0%
TTTGTGAGTTTGGAGGGGAG+GGG - chr5_2:10722677-10722696 Msa0756460:intron 50.0%
!!! TATTGGAGGAGGGTTTTGGG+GGG + chr5_2:10722881-10722900 None:intergenic 50.0%
!! GTATTGGAGGAGGGTTTTGG+GGG + chr5_2:10722882-10722901 None:intergenic 50.0%
! AAATGGGAGGGGAGGGTTTT+GGG + chr5_2:10722961-10722980 None:intergenic 50.0%
! AAAATGGGAGGGGAGGGTTT+TGG + chr5_2:10722962-10722981 None:intergenic 50.0%
TAGAGGAAAATGGGAGGGGA+GGG + chr5_2:10722968-10722987 None:intergenic 50.0%
ATAGAGGAAAATGGGAGGGG+AGG + chr5_2:10722969-10722988 None:intergenic 50.0%
AGGGGAAGGCTTGGGAAAAA+AGG + chr5_2:10723010-10723029 None:intergenic 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG + chr5_2:10723033-10723052 None:intergenic 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG + chr5_2:10723040-10723059 None:intergenic 50.0%
! TCTAGGTTGACCTAGTGCGT+AGG - chr5_2:10723389-10723408 Msa0756460:intron 50.0%
! TGACCTAGTGCGTAGGCTTT+TGG - chr5_2:10723396-10723415 Msa0756460:intron 50.0%
TCCTTTCTACTGTTGCAGGG+TGG - chr5_2:10723594-10723613 Msa0756460:intron 50.0%
!! CTAATGGCGTTTGGTGCGTT+TGG - chr5_2:10723645-10723664 Msa0756460:intron 50.0%
ATGCATGCCCTGAAGCAATG+CGG - chr5_2:10723690-10723709 Msa0756460:intron 50.0%
TTGCTTCCCGCATTGCTTCA+GGG + chr5_2:10723700-10723719 None:intergenic 50.0%
CTTACGGTGGGAAGTTTCTC+TGG - chr5_2:10724179-10724198 Msa0756460:intron 50.0%
GGTGTCAAAACTTGCAACCG+TGG - chr5_2:10724379-10724398 Msa0756460:exon 50.0%
GACGGCGTATCGGAGTGTAT+TGG + chr5_2:10716841-10716860 None:intergenic 55.0%
CCGAGTTCTGCCTCTTTGAC+TGG - chr5_2:10717456-10717475 Msa0756460:intron 55.0%
GTCAGACGTATCTGAGTCGG+AGG - chr5_2:10717772-10717791 Msa0756460:intron 55.0%
GTATCGTGTCCGTGCTTCGT+AGG - chr5_2:10718167-10718186 Msa0756460:intron 55.0%
TGGGGTTTCTGTCCATCCTC+TGG + chr5_2:10719725-10719744 None:intergenic 55.0%
AGAGGATGGACAGAAACCCC+AGG - chr5_2:10719724-10719743 Msa0756460:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr5_2:10720714-10720733 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr5_2:10720720-10720739 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr5_2:10720721-10720740 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr5_2:10720720-10720739 Msa0756460:intron 55.0%
! GACGGCCGAGAAGTGCAATT+AGG - chr5_2:10721298-10721317 Msa0756460:intron 55.0%
AGGCTCTGTTTGCGGGATTG+GGG - chr5_2:10722273-10722292 Msa0756460:intron 55.0%
TGGGAGGGGATGAATTTGGG+GGG + chr5_2:10722530-10722549 None:intergenic 55.0%
!! GGGATGAAGAGCTTTGGGAG+GGG + chr5_2:10722544-10722563 None:intergenic 55.0%
TTTGCGAGTTTGGAGGGGAG+GGG + chr5_2:10722605-10722624 None:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+GGG + chr5_2:10722606-10722625 None:intergenic 55.0%
TGTTTGCGAGTTTGGAGGGG+AGG + chr5_2:10722607-10722626 None:intergenic 55.0%
AAGGGAGTTGTGGTACCGCA+AGG - chr5_2:10722634-10722653 Msa0756460:intron 55.0%
AGGGAGTTGTGGTACCGCAA+GGG - chr5_2:10722635-10722654 Msa0756460:intron 55.0%
! AGGGGAAGGGAAGGCTTTGA+GGG - chr5_2:10722695-10722714 Msa0756460:intron 55.0%
!!! GGGTTTTGGGGGGTTTTGGA+GGG + chr5_2:10722871-10722890 None:intergenic 55.0%
!!! AGGGTTTTGGGGGGTTTTGG+AGG + chr5_2:10722872-10722891 None:intergenic 55.0%
!!! AGGAGGGTTTTGGGGGGTTT+TGG + chr5_2:10722875-10722894 None:intergenic 55.0%
! AATGGGAGGGGAGGGTTTTG+GGG + chr5_2:10722960-10722979 None:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG + chr5_2:10722606-10722625 None:intergenic 55.0%
! AACTGGTTCAGGCCATCTCC+TGG - chr5_2:10723454-10723473 Msa0756460:intron 55.0%
GCCACCCTGCAACAGTAGAA+AGG + chr5_2:10723598-10723617 None:intergenic 55.0%
TGCATGCCCTGAAGCAATGC+GGG - chr5_2:10723691-10723710 Msa0756460:intron 55.0%
GTTGCTTCCCGCATTGCTTC+AGG + chr5_2:10723701-10723720 None:intergenic 55.0%
TCGGTCTCTCTCGTACACTC+TGG - chr5_2:10723795-10723814 Msa0756460:intron 55.0%
CGGTCTCTCTCGTACACTCT+GGG - chr5_2:10723796-10723815 Msa0756460:intron 55.0%
! GCAGTGTGCCGGCAACGTAT+CGG + chr5_2:10716923-10716942 None:intergenic 60.0%
TAGGCGCATCGCTGCTGCAT+AGG - chr5_2:10717885-10717904 Msa0756460:intron 60.0%
! GATGCTTTGGGCACCTACCG+TGG - chr5_2:10720992-10721011 Msa0756460:intron 60.0%
GGCTCTGTTTGCGGGATTGG+GGG - chr5_2:10722274-10722293 Msa0756460:intron 60.0%
GCTCTGTTTGCGGGATTGGG+GGG - chr5_2:10722275-10722294 Msa0756460:intron 60.0%
TGTTTGCGGGATTGGGGGGA+GGG - chr5_2:10722279-10722298 Msa0756460:intron 60.0%
GGAGGGGAGGAAAGGGCTTT+GGG + chr5_2:10722589-10722608 None:intergenic 60.0%
TTGGAGGGGAGGGGAGGAAA+GGG + chr5_2:10722596-10722615 None:intergenic 60.0%
TTTGGAGGGGAGGGGAGGAA+AGG + chr5_2:10722597-10722616 None:intergenic 60.0%
TGAGTTTGGAGGGGAGGGGA+AGG - chr5_2:10722681-10722700 Msa0756460:intron 60.0%
GAGTTTGGAGGGGAGGGGAA+GGG - chr5_2:10722682-10722701 Msa0756460:intron 60.0%
GAGGGGAAGGGAAGGCTTTG+AGG - chr5_2:10722694-10722713 Msa0756460:intron 60.0%
!! GGGGAAGGGAAGGCTTTGAG+GGG - chr5_2:10722696-10722715 Msa0756460:intron 60.0%
!! GAAGGGAAGGCTTTGAGGGG+TGG - chr5_2:10722699-10722718 Msa0756460:intron 60.0%
!! ATGGGAGGGGAGGGTTTTGG+GGG + chr5_2:10722959-10722978 None:intergenic 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG + chr5_2:10723028-10723047 None:intergenic 60.0%
CGAGTTTGGAGGGGAAGGGA+GGG + chr5_2:10723029-10723048 None:intergenic 60.0%
! GCTTTGGGCACCTACCGTGG+TGG - chr5_2:10720995-10721014 Msa0756460:intron 65.0%
CTGTTTGCGGGATTGGGGGG+AGG - chr5_2:10722278-10722297 Msa0756460:intron 65.0%
GTTTGCGGGATTGGGGGGAG+GGG - chr5_2:10722280-10722299 Msa0756460:intron 65.0%
GGGAGGGGAGGAAAGGGCTT+TGG + chr5_2:10722590-10722609 None:intergenic 65.0%
TTGGAGGGGAGGGGAAGGGA+AGG - chr5_2:10722686-10722705 Msa0756460:intron 65.0%
!!! TGGGAGGGGAGGGTTTTGGG+GGG + chr5_2:10722958-10722977 None:intergenic 65.0%
GGGAAGGGAGGGGAAGGCTT+GGG + chr5_2:10723018-10723037 None:intergenic 65.0%
TTGGAGGGGAAGGGAGGGGA+AGG + chr5_2:10723024-10723043 None:intergenic 65.0%
GCGAGTTTGGAGGGGAAGGG+AGG + chr5_2:10723030-10723049 None:intergenic 65.0%
GCGAGTTTGGAGGGGAGGGG+AGG + chr5_2:10722602-10722621 None:intergenic 70.0%
GGGGAAGGGAGGGGAAGGCT+TGG + chr5_2:10723019-10723038 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 10715663 10724570 10715663 ID=Msa0756460;Name=Msa0756460
chr5_2 mRNA 10715663 10724570 10715663 ID=Msa0756460-mRNA-1;Parent=Msa0756460;Name=Msa0756460-mRNA-1;_AED=0.08;_eAED=0.08;_QI=180|1|1|1|0.66|0.7|10|798|447
chr5_2 exon 10715663 10715802 10715663 ID=Msa0756460-mRNA-1:exon:4879;Parent=Msa0756460-mRNA-1
chr5_2 exon 10715829 10716621 10715829 ID=Msa0756460-mRNA-1:exon:4878;Parent=Msa0756460-mRNA-1
chr5_2 exon 10718413 10718497 10718413 ID=Msa0756460-mRNA-1:exon:4877;Parent=Msa0756460-mRNA-1
chr5_2 exon 10718573 10718658 10718573 ID=Msa0756460-mRNA-1:exon:4876;Parent=Msa0756460-mRNA-1
chr5_2 exon 10718756 10718938 10718756 ID=Msa0756460-mRNA-1:exon:4875;Parent=Msa0756460-mRNA-1
chr5_2 exon 10719217 10719305 10719217 ID=Msa0756460-mRNA-1:exon:4874;Parent=Msa0756460-mRNA-1
chr5_2 exon 10720434 10720689 10720434 ID=Msa0756460-mRNA-1:exon:4873;Parent=Msa0756460-mRNA-1
chr5_2 exon 10720814 10720982 10720814 ID=Msa0756460-mRNA-1:exon:4872;Parent=Msa0756460-mRNA-1
chr5_2 exon 10721549 10721693 10721549 ID=Msa0756460-mRNA-1:exon:4871;Parent=Msa0756460-mRNA-1
chr5_2 exon 10724195 10724570 10724195 ID=Msa0756460-mRNA-1:exon:4870;Parent=Msa0756460-mRNA-1
chr5_2 five_prime_UTR 10724391 10724570 10724391 ID=Msa0756460-mRNA-1:five_prime_utr;Parent=Msa0756460-mRNA-1
chr5_2 CDS 10724195 10724390 10724195 ID=Msa0756460-mRNA-1:cds;Parent=Msa0756460-mRNA-1
chr5_2 CDS 10721549 10721693 10721549 ID=Msa0756460-mRNA-1:cds;Parent=Msa0756460-mRNA-1
chr5_2 CDS 10720814 10720982 10720814 ID=Msa0756460-mRNA-1:cds;Parent=Msa0756460-mRNA-1
chr5_2 CDS 10720434 10720689 10720434 ID=Msa0756460-mRNA-1:cds;Parent=Msa0756460-mRNA-1
chr5_2 CDS 10719217 10719305 10719217 ID=Msa0756460-mRNA-1:cds;Parent=Msa0756460-mRNA-1
chr5_2 CDS 10718756 10718938 10718756 ID=Msa0756460-mRNA-1:cds;Parent=Msa0756460-mRNA-1
chr5_2 CDS 10718573 10718658 10718573 ID=Msa0756460-mRNA-1:cds;Parent=Msa0756460-mRNA-1
chr5_2 CDS 10718413 10718497 10718413 ID=Msa0756460-mRNA-1:cds;Parent=Msa0756460-mRNA-1
chr5_2 CDS 10716487 10716621 10716487 ID=Msa0756460-mRNA-1:cds;Parent=Msa0756460-mRNA-1
chr5_2 three_prime_UTR 10715829 10716486 10715829 ID=Msa0756460-mRNA-1:three_prime_utr;Parent=Msa0756460-mRNA-1
chr5_2 three_prime_UTR 10715663 10715802 10715663 ID=Msa0756460-mRNA-1:three_prime_utr;Parent=Msa0756460-mRNA-1
Gene Sequence

>Msa0756460

ATGGGAGTGGTTATTGAAAGTTCCATTTGGGAACTGAATCCATCAATTTTCATATTCATCTTCGTTTGTTGCATATTCTCGATCTTTCTTTATCCTCATGCTGCTAACAGAACTTCCACAATCTTCGATCATGGAATCTCTTCATCGTTTCTTCGTTTCCAACGCAACTTTCTCGTCGTTTATTCTCTCGCTTCAGTTGTGGAAGGTCTATGGTCAGTGTTTGGGGAGTATGAGTTAGCTTCACATGGATTTGACAGGGAGAAGATGATCATGTCTCTCTGTTATGGTTATACAACTGCTCTCTTTGCTGCTCCTTTCCTTGGCATGCTTTCAGATTTGATAGGTCAGAAGAAAGTTTGTTTGATCTTTTGCATCCTACACTTATTTGTTGGTGTATGGAAGAAGATTACACAGCAACCAAGCATTTTCATGACTAGCATATGTCTCTCTATGGCCAATACAATATTCTCATTCAGTTTTGAGACTTGGATGGTCATTCAACATGAGAAGCAAGGACACAGGCTTGACTCACTCAATGACACATATTGGTTAATGACTTTCTTTGAGTCTGCATGTTTTATTGCCAGCCAAATGTTTGCAAATTGGCTGATTGGTAATAATATGGAGAAAAACACCGTTCCTTCCTTTGCTGTCATCTTCTTAGCAATCGTATGCTTCATTTTGCTCACCAGAGGATGGACAGAAACCCCAGGAACAACATCTTTTAAGGAGTATAGTATGTCCTTCTATACATATATTTTTGGTGATAAAAGGATATGGCTGTTGACATGGGCACAAACTAGCCTTCACTTCTCCATTGGACTTTTTTGGATGCTTTGGGCACCTACCGTGGTGGCTGACGGCCGAGAAGTGCAATTAGGATTGATATTTGCATGCTTTTTGGGCTCAAGGATGCTAGGAAGCACTGTTTTTCCGTGTCTCACTAGTGGACCATCATCACTTAGAATTGAGGACTGCCTAGTATCTGCATACATCATATTGGCTGCTCTCTTGTCTATTGTGGCCTATGACTATCAGGAAATTGGAGTTCTGGTGACACTTTTTAGCTTGTTTCATGCATGCGTTGGCTTCGTTTTACCATCTCTCGCTAGATTGAGGACCATGTATGTACCTAATGAATTGCGTGGAGGGATGATGGGGCTCTCTCTTGCCCCTGCAAATGCTGCAATTCTGCTATCTGTGTTGCAAGGTGGCTATTATCGAAATGTTGAAAATGCAACTCTAATGGCGTTTGGTGCGTTTGGTTTGTTGTTAGCAGCTGGATGCATGCATGCCCTGAAGCAATGCGGGAAGCAACCTTATAACAACTGGCATAAACAGTGA

Protein sequence

>Msa0756460

MGVVIESSIWELNPSIFIFIFVCCIFSIFLYPHAANRTSTIFDHGISSSFLRFQRNFLVVYSLASVVEGLWSVFGEYELASHGFDREKMIMSLCYGYTTALFAAPFLGMLSDLIGQKKVCLIFCILHLFVGVWKKITQQPSIFMTSICLSMANTIFSFSFETWMVIQHEKQGHRLDSLNDTYWLMTFFESACFIASQMFANWLIGNNMEKNTVPSFAVIFLAIVCFILLTRGWTETPGTTSFKEYSMSFYTYIFGDKRIWLLTWAQTSLHFSIGLFWMLWAPTVVADGREVQLGLIFACFLGSRMLGSTVFPCLTSGPSSLRIEDCLVSAYIILAALLSIVAYDYQEIGVLVTLFSLFHACVGFVLPSLARLRTMYVPNELRGGMMGLSLAPANAAILLSVLQGGYYRNVENATLMAFGAFGLLLAAGCMHALKQCGKQPYNNWHKQ*