AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1116090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116090 MtrunA17_Chr7g0258551 95.674 393 11 1 1 393 1 387 0.0 771
Msa1116090 MtrunA17_Chr1g0175091 61.560 359 114 7 31 379 78 422 6.02e-141 408
Msa1116090 MtrunA17_Chr7g0261911 53.012 166 77 1 207 371 251 416 1.43e-57 195
Msa1116090 MtrunA17_Chr1g0190301 57.042 142 60 1 209 349 166 307 4.43e-51 176
Msa1116090 MtrunA17_Chr7g0274471 54.225 142 64 1 217 357 217 358 4.32e-48 169
Msa1116090 MtrunA17_Chr2g0291021 51.724 145 67 2 218 359 49 193 3.65e-46 161
Msa1116090 MtrunA17_Chr7g0254981 49.296 142 68 1 216 353 48 189 2.65e-45 157
Msa1116090 MtrunA17_Chr6g0461641 45.395 152 64 3 217 350 41 191 1.39e-36 137
Msa1116090 MtrunA17_Chr7g0242521 46.809 141 71 2 205 342 1 140 9.11e-36 131
Msa1116090 MtrunA17_Chr2g0321461 44.509 173 70 6 201 349 27 197 2.39e-35 134
Msa1116090 MtrunA17_Chr1g0175071 50.350 143 70 1 207 348 165 307 4.42e-35 131
Msa1116090 MtrunA17_Chr1g0175081 63.529 85 31 0 198 282 2 86 2.92e-31 114
Msa1116090 MtrunA17_Chr5g0409731 41.781 146 72 3 218 350 25 170 1.66e-30 118
Msa1116090 MtrunA17_Chr5g0417521 35.032 157 89 2 217 360 14 170 2.05e-30 119
Msa1116090 MtrunA17_Chr8g0356501 40.268 149 79 4 211 351 28 174 2.64e-29 116
Msa1116090 MtrunA17_Chr2g0290991 35.106 188 99 4 218 392 39 216 7.51e-29 114
Msa1116090 MtrunA17_Chr4g0042451 40.000 145 75 4 217 349 16 160 1.50e-28 114
Msa1116090 MtrunA17_Chr2g0310011 40.000 155 83 4 211 357 26 178 3.12e-28 113
Msa1116090 MtrunA17_Chr1g0197171 36.810 163 82 4 218 365 44 200 1.81e-26 107
Msa1116090 MtrunA17_Chr7g0258531 43.056 144 78 2 208 349 203 344 3.77e-25 105
Msa1116090 MtrunA17_Chr7g0243081 50.633 79 38 1 214 292 67 144 1.76e-18 85.9
Msa1116090 MtrunA17_Chr2g0320231 53.488 86 33 2 214 293 93 177 7.43e-18 84.3
Msa1116090 MtrunA17_Chr8g0379121 58.065 62 26 0 214 275 107 168 1.36e-17 84.0
Msa1116090 MtrunA17_Chr3g0109981 47.674 86 42 2 220 303 276 360 2.75e-17 83.2
Msa1116090 MtrunA17_Chr8g0366281 52.941 68 30 1 220 285 175 242 6.18e-17 81.6
Msa1116090 MtrunA17_Chr1g0154261 55.556 63 28 0 220 282 128 190 1.86e-16 79.3
Msa1116090 MtrunA17_Chr2g0288601 61.818 55 21 0 214 268 67 121 6.89e-16 73.9
Msa1116090 MtrunA17_Chr3g0095611 55.932 59 26 0 216 274 17 75 7.14e-16 75.9
Msa1116090 MtrunA17_Chr6g0479431 58.182 55 23 0 220 274 204 258 1.66e-15 77.4
Msa1116090 MtrunA17_Chr1g0210911 48.718 78 36 2 201 274 1 78 1.75e-15 77.0
Msa1116090 MtrunA17_Chr5g0410741 58.182 55 23 0 220 274 221 275 2.52e-15 77.0
Msa1116090 MtrunA17_Chr1g0162931 54.098 61 28 0 214 274 14 74 4.22e-15 75.1
Msa1116090 MtrunA17_Chr2g0283951 51.515 66 28 1 214 275 85 150 7.36e-14 72.4
Msa1116090 MtrunA17_Chr7g0275401 56.667 60 25 1 212 271 186 244 2.10e-13 70.1
Msa1116090 MtrunA17_Chr2g0304841 57.407 54 22 1 218 271 213 265 5.74e-12 67.4
Msa1116090 MtrunA17_Chr1g0198601 38.776 98 45 1 202 284 180 277 7.38e-12 66.2
Msa1116090 MtrunA17_Chr4g0062921 49.231 65 33 0 207 271 224 288 8.45e-12 66.2
Msa1116090 MtrunA17_Chr4g0074411 47.059 85 41 3 218 302 201 281 2.07e-11 65.5
Msa1116090 MtrunA17_Chr4g0009901 50.000 56 27 1 216 271 166 220 2.14e-11 63.9
Msa1116090 MtrunA17_Chr1g0161431 55.357 56 24 1 216 271 198 252 3.11e-11 65.1
Msa1116090 MtrunA17_Chr1g0149841 51.471 68 32 1 218 285 191 257 3.23e-11 64.7
Msa1116090 MtrunA17_Chr5g0402631 53.571 56 26 0 216 271 212 267 7.72e-11 63.2
Msa1116090 MtrunA17_Chr4g0045361 50.877 57 28 0 215 271 271 327 7.79e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116090 AT5G06800.1 59.048 210 81 5 149 354 120 328 1.20e-67 219
Msa1116090 AT5G06800.2 56.000 225 87 7 141 354 110 333 3.44e-65 213
Msa1116090 AT5G29000.1 54.605 152 65 1 205 352 175 326 8.37e-53 180
Msa1116090 AT5G29000.3 54.605 152 65 1 205 352 175 326 8.37e-53 180
Msa1116090 AT5G29000.2 54.605 152 65 1 205 352 218 369 1.78e-52 180
Msa1116090 AT3G04450.4 45.604 182 88 3 175 352 162 336 3.56e-50 174
Msa1116090 AT3G04450.2 45.604 182 88 3 175 352 162 336 3.56e-50 174
Msa1116090 AT3G04450.1 45.604 182 88 3 175 352 202 376 9.12e-50 174
Msa1116090 AT4G28610.1 54.861 144 63 1 205 346 212 355 1.24e-48 170
Msa1116090 AT2G01060.1 50.331 151 73 2 216 364 13 163 1.95e-47 163
Msa1116090 AT3G13040.3 48.810 168 77 4 191 349 211 378 5.50e-45 161
Msa1116090 AT3G13040.1 48.810 168 77 4 191 349 211 378 5.50e-45 161
Msa1116090 AT3G13040.2 48.810 168 77 4 191 349 211 378 5.50e-45 161
Msa1116090 AT2G20400.1 53.077 130 60 1 218 346 231 360 9.99e-42 151
Msa1116090 AT2G20400.2 53.435 131 59 2 218 346 231 361 3.28e-40 147
Msa1116090 AT3G04030.3 45.963 161 69 3 207 349 32 192 1.09e-37 140
Msa1116090 AT5G18240.1 44.720 161 71 3 208 350 33 193 1.36e-36 137
Msa1116090 AT5G18240.4 44.720 161 71 3 208 350 33 193 1.36e-36 137
Msa1116090 AT5G06800.3 55.405 148 59 6 141 282 110 256 2.87e-36 134
Msa1116090 AT3G04030.2 44.720 161 70 4 207 349 32 191 1.12e-34 132
Msa1116090 AT3G24120.1 41.667 156 71 2 218 353 41 196 1.51e-34 129
Msa1116090 AT1G69580.1 42.038 157 65 3 217 351 33 185 1.21e-33 128
Msa1116090 AT5G18240.5 44.099 161 70 4 208 350 33 191 1.72e-33 129
Msa1116090 AT1G69580.2 41.139 158 66 3 217 351 33 186 1.13e-32 125
Msa1116090 AT3G04030.1 43.478 161 67 4 207 349 32 186 1.77e-32 126
Msa1116090 AT3G24120.2 40.881 159 71 3 218 353 41 199 1.88e-32 124
Msa1116090 AT4G13640.1 41.667 144 71 1 218 348 37 180 2.41e-32 124
Msa1116090 AT5G45580.1 40.606 165 67 5 218 356 7 166 2.88e-32 122
Msa1116090 AT1G79430.2 43.243 148 76 4 211 351 25 171 2.97e-32 125
Msa1116090 AT5G45580.2 40.606 165 67 5 218 356 23 182 4.42e-32 122
Msa1116090 AT5G18240.2 42.236 161 69 4 208 350 33 187 3.05e-31 123
Msa1116090 AT5G18240.3 42.236 161 69 4 208 350 33 187 3.05e-31 123
Msa1116090 AT4G13640.2 40.816 147 71 2 218 348 37 183 2.47e-30 118
Msa1116090 AT2G01060.2 49.123 114 56 2 253 364 1 114 8.84e-29 112
Msa1116090 AT5G29000.4 59.091 88 34 1 205 290 218 305 1.06e-28 114
Msa1116090 AT3G04450.3 47.115 104 48 2 175 278 202 298 1.20e-26 108
Msa1116090 AT3G12730.1 38.562 153 81 5 209 349 12 163 3.56e-25 102
Msa1116090 AT2G42660.1 56.522 69 30 0 214 282 46 114 9.11e-20 88.6
Msa1116090 AT3G04030.5 41.379 116 52 2 250 349 1 116 2.80e-18 85.5
Msa1116090 AT2G38300.1 59.677 62 25 0 214 275 50 111 2.01e-17 83.2
Msa1116090 AT4G04605.1 48.718 78 37 1 214 288 10 87 2.69e-16 77.8
Msa1116090 AT2G02060.2 62.069 58 22 0 214 271 25 82 4.75e-16 77.8
Msa1116090 AT2G02060.1 62.069 58 22 0 214 271 25 82 4.75e-16 77.8
Msa1116090 AT4G17695.1 52.941 68 30 1 220 285 166 233 5.06e-16 79.0
Msa1116090 AT5G42630.2 53.125 64 30 0 220 283 107 170 6.46e-16 76.6
Msa1116090 AT1G14600.1 56.452 62 27 0 214 275 19 80 8.56e-16 77.0
Msa1116090 AT1G32240.2 52.941 68 30 1 220 285 215 282 8.78e-16 78.6
Msa1116090 AT1G79430.1 38.318 107 60 3 250 351 1 106 8.85e-16 77.8
Msa1116090 AT5G42630.1 53.125 64 30 0 220 283 107 170 9.97e-16 77.4
Msa1116090 AT1G32240.1 52.941 68 30 1 220 285 215 282 1.18e-15 78.2
Msa1116090 AT2G40260.1 59.322 59 23 1 217 274 80 138 2.51e-15 77.4
Msa1116090 AT5G16560.1 58.182 55 23 0 220 274 221 275 3.16e-15 77.0
Msa1116090 AT2G06020.1 54.386 57 26 0 218 274 86 142 6.59e-15 75.1
Msa1116090 AT4G04580.1 50.820 61 30 0 214 274 10 70 3.53e-14 70.5
Msa1116090 AT3G04030.4 37.931 116 50 3 250 349 1 110 2.02e-13 70.9
Msa1116090 AT4G37180.1 50.000 64 32 0 208 271 200 263 5.15e-13 70.1
Msa1116090 AT4G37180.2 50.000 64 32 0 208 271 207 270 6.50e-13 70.1
Msa1116090 AT4G04555.1 50.000 68 29 1 212 274 3 70 1.64e-12 63.9
Msa1116090 AT5G18240.6 35.897 117 53 3 250 350 1 111 2.06e-12 68.2
Msa1116090 AT2G40970.1 46.053 76 38 2 198 271 83 157 8.73e-12 65.1
Msa1116090 AT3G16857.3 57.407 54 22 1 218 271 167 219 1.00e-11 67.0
Msa1116090 AT3G16857.2 57.407 54 22 1 218 271 237 289 1.32e-11 66.6
Msa1116090 AT3G16857.1 57.407 54 22 1 218 271 237 289 1.35e-11 66.6
Msa1116090 AT2G03500.1 49.254 67 31 1 205 271 223 286 2.65e-11 65.5
Msa1116090 AT5G58080.1 51.667 60 28 1 212 271 188 246 5.26e-11 64.7
Msa1116090 AT4G37180.3 47.541 61 32 0 208 268 200 260 8.12e-11 62.8

Find 55 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATCATCATTGATTGTATT+TGG 0.166617 7_3:+63640513 None:intergenic
AAGGGAAAACAATCATTTAT+TGG 0.215858 7_3:-63642476 Msa1116090:CDS
TCCCTTTGTGTCAATCTCTA+AGG 0.220544 7_3:-63642495 Msa1116090:CDS
TGATTCTCCTTCTTCAACTA+TGG 0.222200 7_3:+63642678 None:intergenic
AATTATGTGTTCGGAGGTTT+TGG 0.254189 7_3:+63640425 None:intergenic
CAGCAAAAGTTGTTCTTTGA+TGG 0.257577 7_3:-63642295 Msa1116090:CDS
ATCATATAAGGTTAATGATT+TGG 0.267300 7_3:-63642521 Msa1116090:CDS
GTGTTTGTATTACATGATTT+TGG 0.272236 7_3:+63642655 None:intergenic
ATCATCTTCAATATAGCTTT+TGG 0.290192 7_3:+63641586 None:intergenic
TTTGAGTTCTCAATCATATA+AGG 0.290541 7_3:-63642533 Msa1116090:CDS
ATGAATCAAATTTGGAATAT+AGG 0.310941 7_3:-63642724 Msa1116090:CDS
CATACTGCACATCATCTATA+TGG 0.343272 7_3:+63641075 None:intergenic
TAATGGAAATCATGACTATA+TGG 0.366206 7_3:-63642236 Msa1116090:intron
AAACTTCCTGCTGAAATTGT+TGG 0.389210 7_3:+63641825 None:intergenic
TTGAGTGTGTGAATCGCCTT+GGG 0.396796 7_3:-63641710 Msa1116090:CDS
GGAAGTTTATCAACTTCTCT+TGG 0.397953 7_3:-63641810 Msa1116090:CDS
GTGTTAGACAGTTCAAAGTT+GGG 0.442345 7_3:+63642433 None:intergenic
GTCTAACACTTTGCAAGCAT+TGG 0.457506 7_3:-63642419 Msa1116090:CDS
GTTGAGTGTGTGAATCGCCT+TGG 0.458117 7_3:-63641711 Msa1116090:CDS
AGTGTTAGACAGTTCAAAGT+TGG 0.458507 7_3:+63642432 None:intergenic
CAAGTAAAACAAGAATTAGA+TGG 0.463217 7_3:-63641758 Msa1116090:CDS
TTGCAGTGGCTTTCAAATCA+AGG 0.468098 7_3:-63640898 Msa1116090:intron
TAACTATCAAATTATGTGTT+CGG 0.471768 7_3:+63640416 None:intergenic
CCCTTAGAGATTGACACAAA+GGG 0.473466 7_3:+63642494 None:intergenic
AAGATTGATTATTATCAACT+TGG 0.481452 7_3:+63642554 None:intergenic
AACAAGAATTAGATGGACTA+AGG 0.489147 7_3:-63641751 Msa1116090:CDS
TTGGTGAAATCTCAATTGAA+TGG 0.505462 7_3:-63642400 Msa1116090:CDS
GTTCAAAGTTGGGGTCATGC+TGG 0.509873 7_3:+63642443 None:intergenic
CCCTTTGTGTCAATCTCTAA+GGG 0.510278 7_3:-63642494 Msa1116090:CDS
CTTGGAAGCACTTCTTCTAG+TGG 0.515481 7_3:-63641792 Msa1116090:CDS
TTGTCTCCAACAATTTCAGC+AGG 0.521373 7_3:-63641831 Msa1116090:CDS
GTTGAGGTTTCTATTTCTGA+AGG 0.521876 7_3:-63640471 Msa1116090:CDS
AAATATTGGCAAAGATGTTG+AGG 0.533851 7_3:-63640487 Msa1116090:CDS
AAATTACCTTGAGCTGACTC+TGG 0.535434 7_3:+63641493 None:intergenic
ATTGGAAAAGGCTTGCTCCC+AGG 0.542042 7_3:+63642322 None:intergenic
CAACTATCCATAGTTGAAGA+AGG 0.544834 7_3:-63642685 Msa1116090:CDS
CAGAAGCTGGTGACTCGAAA+CGG 0.549320 7_3:+63642623 None:intergenic
TTGGAAGCACTTCTTCTAGT+GGG 0.558294 7_3:-63641791 Msa1116090:CDS
TATGCAACAGAAAACTGCAT+GGG 0.559407 7_3:-63642595 Msa1116090:CDS
CATCCGTTGCAGGTTGCTCG+TGG 0.567248 7_3:-63641906 Msa1116090:intron
TCCCTTAGAGATTGACACAA+AGG 0.575040 7_3:+63642493 None:intergenic
CTATCAAATTATGTGTTCGG+AGG 0.576552 7_3:+63640419 None:intergenic
TTATGCAACAGAAAACTGCA+TGG 0.589899 7_3:-63642596 Msa1116090:CDS
TTGTATTTGGAGTATTGAAG+AGG 0.600647 7_3:+63640526 None:intergenic
TGTTAGACAGTTCAAAGTTG+GGG 0.605516 7_3:+63642434 None:intergenic
TTGAAGATGATGAACTCTGA+AGG 0.611654 7_3:-63641574 Msa1116090:CDS
GCGTCTTCATGAACAACTAG+AGG 0.618964 7_3:-63640844 Msa1116090:intron
ATAGATGATGTGCAGTATGT+TGG 0.634729 7_3:-63641071 Msa1116090:CDS
TTCATGCCAGAGTCAGCTCA+AGG 0.639842 7_3:-63641499 Msa1116090:intron
CAATTGCGACTTGAGGAACA+AGG 0.653307 7_3:-63640597 Msa1116090:CDS
AACGTTACAATTGCGACTTG+AGG 0.655322 7_3:-63640604 Msa1116090:CDS
AACTTCAATTAGATGCACAA+AGG 0.668848 7_3:-63640866 Msa1116090:CDS
TGATGAGCTGTTGCTAACTG+AGG 0.672832 7_3:+63642267 None:intergenic
GAGTGTGTGAATCGCCTTGG+GGG 0.715113 7_3:-63641708 Msa1116090:CDS
TGAGTGTGTGAATCGCCTTG+GGG 0.716876 7_3:-63641709 Msa1116090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACCTTATTTTTTATTTTATA+TGG - chr7_3:63642461-63642480 Msa1116090:CDS 10.0%
!!! CCTTATTTTTTATTTTATAT+GGG - chr7_3:63642462-63642481 Msa1116090:CDS 10.0%
!!! AAAATTTATTCAAGTTTTCT+GGG + chr7_3:63640790-63640809 None:intergenic 15.0%
!! CCCATATAAAATAAAAAATA+AGG + chr7_3:63642465-63642484 None:intergenic 15.0%
!! AATGATGATACAAAAAATAT+TGG - chr7_3:63642645-63642664 Msa1116090:CDS 15.0%
!!! ATGAATCAAATTTGGAATAT+AGG - chr7_3:63640422-63640441 Msa1116090:CDS 20.0%
!! AAGATTGATTATTATCAACT+TGG + chr7_3:63640595-63640614 None:intergenic 20.0%
!! ATCATATAAGGTTAATGATT+TGG - chr7_3:63640625-63640644 Msa1116090:intron 20.0%
!!! GAAAATTTATTCAAGTTTTC+TGG + chr7_3:63640791-63640810 None:intergenic 20.0%
!!! AACTTGAATAAATTTTCATG+TGG - chr7_3:63640794-63640813 Msa1116090:intron 20.0%
!!! ACTTGAATAAATTTTCATGT+GGG - chr7_3:63640795-63640814 Msa1116090:intron 20.0%
!! AGTATAAATATGTTATGACA+CGG + chr7_3:63641055-63641074 None:intergenic 20.0%
!!! ACATTAGTTTGTTCAATATT+AGG + chr7_3:63642020-63642039 None:intergenic 20.0%
!!! TAAGAGTATAAAAGTAGTTT+AGG + chr7_3:63642131-63642150 None:intergenic 20.0%
!! TTAGAGTCATATAACATATA+AGG + chr7_3:63642199-63642218 None:intergenic 20.0%
!! AAGTTCATAAAGAAAATGAA+TGG + chr7_3:63642338-63642357 None:intergenic 20.0%
!! TTTCTAATCATATTCTTTCT+TGG - chr7_3:63642506-63642525 Msa1116090:CDS 20.0%
!! GTGTTTGTATTACATGATTT+TGG + chr7_3:63640494-63640513 None:intergenic 25.0%
!! TTTGAGTTCTCAATCATATA+AGG - chr7_3:63640613-63640632 Msa1116090:CDS 25.0%
! AAGGGAAAACAATCATTTAT+TGG - chr7_3:63640670-63640689 Msa1116090:intron 25.0%
!! AGCTCATCATTTTGTAATAA+TGG - chr7_3:63640893-63640912 Msa1116090:CDS 25.0%
! TAATGGAAATCATGACTATA+TGG - chr7_3:63640910-63640929 Msa1116090:intron 25.0%
! ATAAATCATCGTATCACATT+AGG - chr7_3:63641185-63641204 Msa1116090:intron 25.0%
! CAAGTAAAACAAGAATTAGA+TGG - chr7_3:63641388-63641407 Msa1116090:intron 25.0%
!! TATCTGATAGTCTTTTCTAT+TGG - chr7_3:63641515-63641534 Msa1116090:CDS 25.0%
!! ATCATCTTCAATATAGCTTT+TGG + chr7_3:63641563-63641582 None:intergenic 25.0%
!! ATGACTTTTCACATGAAATA+TGG + chr7_3:63641603-63641622 None:intergenic 25.0%
! CTCAACATGAAAAATAAACT+AGG + chr7_3:63641721-63641740 None:intergenic 25.0%
!! TTTGTTATAGTGTTTGTCAA+TGG - chr7_3:63641798-63641817 Msa1116090:CDS 25.0%
! CATTATTCACTATGAACAAT+GGG + chr7_3:63641847-63641866 None:intergenic 25.0%
! ACATTATTCACTATGAACAA+TGG + chr7_3:63641848-63641867 None:intergenic 25.0%
! TGAATAATGTCTGGTTAAAT+AGG - chr7_3:63641858-63641877 Msa1116090:CDS 25.0%
! TGTATTTATATCCACTAGAA+TGG - chr7_3:63641914-63641933 Msa1116090:intron 25.0%
! GAAAGAAAATAAGCACATTT+GGG + chr7_3:63641976-63641995 None:intergenic 25.0%
! TGAAAGAAAATAAGCACATT+TGG + chr7_3:63641977-63641996 None:intergenic 25.0%
! ATGAAATTAATCAAGCAACT+TGG + chr7_3:63642171-63642190 None:intergenic 25.0%
!!! CTGTTTTTTAACGATGATTT+AGG + chr7_3:63642399-63642418 None:intergenic 25.0%
! TCGTTAAAAAACAGTTTGTA+AGG - chr7_3:63642405-63642424 Msa1116090:CDS 25.0%
! AAAAAACAGTTTGTAAGGTA+AGG - chr7_3:63642410-63642429 Msa1116090:CDS 25.0%
!! GTATCATCATTGATTGTATT+TGG + chr7_3:63642636-63642655 None:intergenic 25.0%
TTGGTGAAATCTCAATTGAA+TGG - chr7_3:63640746-63640765 Msa1116090:intron 30.0%
!!! TTTTGCTGTTCAATTGGAAA+AGG + chr7_3:63640839-63640858 None:intergenic 30.0%
!!! AACAACTTTTGCTGTTCAAT+TGG + chr7_3:63640845-63640864 None:intergenic 30.0%
TTTGCAAAATGATTCTTCTG+CGG - chr7_3:63640941-63640960 Msa1116090:intron 30.0%
!! AACAAGAATTAGATGGACTA+AGG - chr7_3:63641395-63641414 Msa1116090:intron 30.0%
!! TATTGGTTTCTTGCTTATAG+AGG - chr7_3:63641532-63641551 Msa1116090:CDS 30.0%
TATAGTGTTTGTCAATGGAT+AGG - chr7_3:63641803-63641822 Msa1116090:CDS 30.0%
TTTGTCAATGGATAGGATAT+AGG - chr7_3:63641810-63641829 Msa1116090:CDS 30.0%
TGTTCATAGTGAATAATGTC+TGG - chr7_3:63641849-63641868 Msa1116090:CDS 30.0%
AAACTAATGTGTCCAATTTC+AGG - chr7_3:63642030-63642049 Msa1116090:intron 30.0%
AACTAATGTGTCCAATTTCA+GGG - chr7_3:63642031-63642050 Msa1116090:intron 30.0%
AAATTAATCAAGCAACTTGG+TGG + chr7_3:63642168-63642187 None:intergenic 30.0%
AACTTCAATTAGATGCACAA+AGG - chr7_3:63642280-63642299 Msa1116090:CDS 30.0%
CATAAAGAAAATGAATGGCA+AGG + chr7_3:63642333-63642352 None:intergenic 30.0%
! GTCTGAAATGAGTTTATAAC+GGG + chr7_3:63642443-63642462 None:intergenic 30.0%
! GGTCTGAAATGAGTTTATAA+CGG + chr7_3:63642444-63642463 None:intergenic 30.0%
!! TTGTATTTGGAGTATTGAAG+AGG + chr7_3:63642623-63642642 None:intergenic 30.0%
AAATATTGGCAAAGATGTTG+AGG - chr7_3:63642659-63642678 Msa1116090:CDS 30.0%
CAACTATCCATAGTTGAAGA+AGG - chr7_3:63640461-63640480 Msa1116090:CDS 35.0%
TGATTCTCCTTCTTCAACTA+TGG + chr7_3:63640471-63640490 None:intergenic 35.0%
TTATGCAACAGAAAACTGCA+TGG - chr7_3:63640550-63640569 Msa1116090:CDS 35.0%
TATGCAACAGAAAACTGCAT+GGG - chr7_3:63640551-63640570 Msa1116090:CDS 35.0%
TGTTAGACAGTTCAAAGTTG+GGG + chr7_3:63640715-63640734 None:intergenic 35.0%
GTGTTAGACAGTTCAAAGTT+GGG + chr7_3:63640716-63640735 None:intergenic 35.0%
AGTGTTAGACAGTTCAAAGT+TGG + chr7_3:63640717-63640736 None:intergenic 35.0%
!! TCAAGTTTTCTGGGAATCTA+AGG + chr7_3:63640781-63640800 None:intergenic 35.0%
! TTTTCATGTGGGAATTTTCC+TGG - chr7_3:63640806-63640825 Msa1116090:intron 35.0%
! TTTCATGTGGGAATTTTCCT+GGG - chr7_3:63640807-63640826 Msa1116090:intron 35.0%
CAGCAAAAGTTGTTCTTTGA+TGG - chr7_3:63640851-63640870 Msa1116090:CDS 35.0%
AAACTTCCTGCTGAAATTGT+TGG + chr7_3:63641324-63641343 None:intergenic 35.0%
GGAAGTTTATCAACTTCTCT+TGG - chr7_3:63641336-63641355 Msa1116090:intron 35.0%
TTGAAGATGATGAACTCTGA+AGG - chr7_3:63641572-63641591 Msa1116090:CDS 35.0%
TCAAACTTCTACCATTCTAG+TGG + chr7_3:63641928-63641947 None:intergenic 35.0%
TTGTCAGATTTCCCTGAAAT+TGG + chr7_3:63642045-63642064 None:intergenic 35.0%
CATACTGCACATCATCTATA+TGG + chr7_3:63642074-63642093 None:intergenic 35.0%
ATAGATGATGTGCAGTATGT+TGG - chr7_3:63642075-63642094 Msa1116090:intron 35.0%
!! GTTGAGGTTTCTATTTCTGA+AGG - chr7_3:63642675-63642694 Msa1116090:CDS 35.0%
! AATTATGTGTTCGGAGGTTT+TGG + chr7_3:63642724-63642743 None:intergenic 35.0%
GTTGCATAAAAAGCAGAAGC+TGG + chr7_3:63640539-63640558 None:intergenic 40.0%
TCCCTTTGTGTCAATCTCTA+AGG - chr7_3:63640651-63640670 Msa1116090:intron 40.0%
CCCTTAGAGATTGACACAAA+GGG + chr7_3:63640655-63640674 None:intergenic 40.0%
CCCTTTGTGTCAATCTCTAA+GGG - chr7_3:63640652-63640671 Msa1116090:intron 40.0%
TCCCTTAGAGATTGACACAA+AGG + chr7_3:63640656-63640675 None:intergenic 40.0%
GTCTAACACTTTGCAAGCAT+TGG - chr7_3:63640727-63640746 Msa1116090:intron 40.0%
TCCAACGATCAAGATACTAC+TGG - chr7_3:63641004-63641023 Msa1116090:intron 40.0%
TCCAGTAGTATCTTGATCGT+TGG + chr7_3:63641008-63641027 None:intergenic 40.0%
AACGATCAAGATACTACTGG+AGG - chr7_3:63641007-63641026 Msa1116090:intron 40.0%
TTGAGAATCCTTGCATCTCA+CGG - chr7_3:63641078-63641097 Msa1116090:CDS 40.0%
TTGTCTCCAACAATTTCAGC+AGG - chr7_3:63641315-63641334 Msa1116090:intron 40.0%
!! TTGGAAGCACTTCTTCTAGT+GGG - chr7_3:63641355-63641374 Msa1116090:intron 40.0%
! AAATTACCTTGAGCTGACTC+TGG + chr7_3:63641656-63641675 None:intergenic 40.0%
TTGCAGTGGCTTTCAAATCA+AGG - chr7_3:63642248-63642267 Msa1116090:CDS 40.0%
AACGTTACAATTGCGACTTG+AGG - chr7_3:63642542-63642561 Msa1116090:CDS 40.0%
TGATGAGCTGTTGCTAACTG+AGG + chr7_3:63640882-63640901 None:intergenic 45.0%
GATCAAGATACTACTGGAGG+TGG - chr7_3:63641010-63641029 Msa1116090:intron 45.0%
GTTATGACACGGATCCTCTT+CGG + chr7_3:63641044-63641063 None:intergenic 45.0%
TGAGAATCCTTGCATCTCAC+GGG - chr7_3:63641079-63641098 Msa1116090:CDS 45.0%
CTAATGATAGCATCCGTTGC+AGG - chr7_3:63641230-63641249 Msa1116090:intron 45.0%
!! CTTGGAAGCACTTCTTCTAG+TGG - chr7_3:63641354-63641373 Msa1116090:intron 45.0%
TTGAGTGTGTGAATCGCCTT+GGG - chr7_3:63641436-63641455 Msa1116090:intron 45.0%
!! ACACCACTCTTGATTTGCAG+TGG - chr7_3:63642234-63642253 Msa1116090:intron 45.0%
AAGCCACTGCAAATCAAGAG+TGG + chr7_3:63642240-63642259 None:intergenic 45.0%
GCGTCTTCATGAACAACTAG+AGG - chr7_3:63642302-63642321 Msa1116090:CDS 45.0%
CAATTGCGACTTGAGGAACA+AGG - chr7_3:63642549-63642568 Msa1116090:CDS 45.0%
!!! TGTGTTCGGAGGTTTTGGAT+TGG + chr7_3:63642719-63642738 None:intergenic 45.0%
CAGAAGCTGGTGACTCGAAA+CGG + chr7_3:63640526-63640545 None:intergenic 50.0%
GTTCAAAGTTGGGGTCATGC+TGG + chr7_3:63640706-63640725 None:intergenic 50.0%
! ATTGGAAAAGGCTTGCTCCC+AGG + chr7_3:63640827-63640846 None:intergenic 50.0%
ATTCAACGACCAACCTCTGC+TGG + chr7_3:63640981-63641000 None:intergenic 50.0%
CAAGATACTACTGGAGGTGG+TGG - chr7_3:63641013-63641032 Msa1116090:intron 50.0%
GAGAATCCTTGCATCTCACG+GGG - chr7_3:63641080-63641099 Msa1116090:CDS 50.0%
TTTCTTCCCCGTGAGATGCA+AGG + chr7_3:63641089-63641108 None:intergenic 50.0%
GTTGAGTGTGTGAATCGCCT+TGG - chr7_3:63641435-63641454 Msa1116090:intron 50.0%
TGAGTGTGTGAATCGCCTTG+GGG - chr7_3:63641437-63641456 Msa1116090:intron 50.0%
TTCATGCCAGAGTCAGCTCA+AGG - chr7_3:63641647-63641666 Msa1116090:intron 50.0%
CTCTGCTGGAGAGGTAGAAG+AGG + chr7_3:63640967-63640986 None:intergenic 55.0%
CTCTTCTACCTCTCCAGCAG+AGG - chr7_3:63640965-63640984 Msa1116090:intron 55.0%
TCTACCTCTCCAGCAGAGGT+TGG - chr7_3:63640969-63640988 Msa1116090:intron 55.0%
GATCCACGAGCAACCTGCAA+CGG + chr7_3:63641246-63641265 None:intergenic 55.0%
GAGTGTGTGAATCGCCTTGG+GGG - chr7_3:63641438-63641457 Msa1116090:intron 55.0%
ACTTACTCTCAGCACCCCCA+AGG + chr7_3:63641455-63641474 None:intergenic 55.0%
ACGACCAACCTCTGCTGGAG+AGG + chr7_3:63640976-63640995 None:intergenic 60.0%
!! AGGTGGTGGAGAGACCGAAG+AGG - chr7_3:63641027-63641046 Msa1116090:intron 60.0%
CATCCGTTGCAGGTTGCTCG+TGG - chr7_3:63641240-63641259 Msa1116090:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 63640422 63642746 63640422 ID=Msa1116090;Name=Msa1116090
chr7_3 mRNA 63640422 63642746 63640422 ID=Msa1116090-mRNA-1;Parent=Msa1116090;Name=Msa1116090-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|1|6|0|393
chr7_3 exon 63642237 63642746 63642237 ID=Msa1116090-mRNA-1:exon:14991;Parent=Msa1116090-mRNA-1
chr7_3 exon 63641700 63641916 63641700 ID=Msa1116090-mRNA-1:exon:14990;Parent=Msa1116090-mRNA-1
chr7_3 exon 63641500 63641616 63641500 ID=Msa1116090-mRNA-1:exon:14989;Parent=Msa1116090-mRNA-1
chr7_3 exon 63641062 63641116 63641062 ID=Msa1116090-mRNA-1:exon:14988;Parent=Msa1116090-mRNA-1
chr7_3 exon 63640845 63640914 63640845 ID=Msa1116090-mRNA-1:exon:14987;Parent=Msa1116090-mRNA-1
chr7_3 exon 63640422 63640634 63640422 ID=Msa1116090-mRNA-1:exon:14986;Parent=Msa1116090-mRNA-1
chr7_3 CDS 63642237 63642746 63642237 ID=Msa1116090-mRNA-1:cds;Parent=Msa1116090-mRNA-1
chr7_3 CDS 63641700 63641916 63641700 ID=Msa1116090-mRNA-1:cds;Parent=Msa1116090-mRNA-1
chr7_3 CDS 63641500 63641616 63641500 ID=Msa1116090-mRNA-1:cds;Parent=Msa1116090-mRNA-1
chr7_3 CDS 63641062 63641116 63641062 ID=Msa1116090-mRNA-1:cds;Parent=Msa1116090-mRNA-1
chr7_3 CDS 63640845 63640914 63640845 ID=Msa1116090-mRNA-1:cds;Parent=Msa1116090-mRNA-1
chr7_3 CDS 63640422 63640634 63640422 ID=Msa1116090-mRNA-1:cds;Parent=Msa1116090-mRNA-1
Gene Sequence

>Msa1116090

ATGAATCAAATTTGGAATATAGGAACATGCAATCAACAACAACTATCCATAGTTGAAGAAGGAGAATCACCAAAATCATGTAATACAAACACTATTATGAGCCGTTTCGAGTCACCAGCTTCTGCTTTTTATGCAACAGAAAACTGCATGGGATTTGCAGAATTTGATCACCAAGTTGATAATAATCAATCTTTGAGTTCTCAATCATATAAGGTTAATGATTTGGAATTCCCTTTGTGTCAATCTCTAAGGGAAAACAATCATTTATTGGATGCATCAAACCAGCATGACCCCAACTTTGAACTGTCTAACACTTTGCAAGCATTGGTGAAATCTCAATTGAATGGTAATCAACACCTTAGATTCCCAGAAAACTTGAATAAATTTTCATGTGGGAATTTTCCTGGGAGCAAGCCTTTTCCAATTGAACAGCAAAAGTTGTTCTTTGATGGTCTTGCCTCAGTTAGCAACAGCTCATCATTTTGTAATAATGGAAATCATGACTATATGGTTGCTCGTGGATCTTATCATTTATCTGTTGAGCAACTGAATTTCTCTTCTCAGCATGAGAAGTTGTCTCCAACAATTTCAGCAGGAAGTTTATCAACTTCTCTTGGAAGCACTTCTTCTAGTGGGAATGTAGTCTCAAGTAAAACAAGAATTAGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGGGGTGCTGAGAAGGCAACACCAAAAGCTATATTGAAGATGATGAACTCTGAAGGCTTGACCATATTTCATGTGAAAAGTCATTTGCAGAAATATAGAACTGCAAAATTCATGCCAGAGTCAGCTCAAGGGAAATCTGACAAAAGAATCCATATAGATGATGTGCAGTATGTTGGTGTTAAAACTGGCTTTCAAATCAAGGAAGCACTTCAACTTCAATTAGATGCACAAAGGCGTCTTCATGAACAACTAGAGATTCAAAGAACGTTACAATTGCGACTTGAGGAACAAGGCAGACAGCTGAAAAAAATGTTTGATCAGCAGCAGAAGACATGTAGTAACCTCTTCAATACTCCAAATACAATCAATGATGATACAAAAAATATTGGCAAAGATGTTGAGGTTTCTATTTCTGAAGGAGCTGAAAACTCTTTATTCCAATCCAAAACCTCCGAACACATAATTTGA

Protein sequence

>Msa1116090

MNQIWNIGTCNQQQLSIVEEGESPKSCNTNTIMSRFESPASAFYATENCMGFAEFDHQVDNNQSLSSQSYKVNDLEFPLCQSLRENNHLLDASNQHDPNFELSNTLQALVKSQLNGNQHLRFPENLNKFSCGNFPGSKPFPIEQQKLFFDGLASVSNSSSFCNNGNHDYMVARGSYHLSVEQLNFSSQHEKLSPTISAGSLSTSLGSTSSSGNVVSSKTRIRWTKDLHEKFVECVNRLGGAEKATPKAILKMMNSEGLTIFHVKSHLQKYRTAKFMPESAQGKSDKRIHIDDVQYVGVKTGFQIKEALQLQLDAQRRLHEQLEIQRTLQLRLEEQGRQLKKMFDQQQKTCSNLFNTPNTINDDTKNIGKDVEVSISEGAENSLFQSKTSEHII*