AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1089880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089880 MtrunA17_Chr4g0000421 75.120 209 16 6 16 203 21 214 1.16e-96 280
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089880 AT4G27990.1 74.038 104 23 2 99 199 111 213 7.30e-48 157
Msa1089880 AT3G07430.1 70.874 103 27 1 100 199 125 227 2.41e-46 154

Find 71 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAACCATTGTCTGCAATT+AGG 0.283838 7_3:-3472415 Msa1089880:CDS
TGGGTTTAGGATTGGGTATG+GGG 0.292584 7_3:-3472919 Msa1089880:CDS
TGAGGGATGATTAGGTTATT+AGG 0.296692 7_3:+3472842 None:intergenic
CTCTTTGAGTGAGAGAATTC+TGG 0.302984 7_3:-3470515 Msa1089880:three_prime_UTR
ACAACCATTGTCTGCAATTA+GGG 0.307081 7_3:-3472414 Msa1089880:CDS
AGAATCTTCTTCCAACGTTT+TGG 0.324727 7_3:-3470918 Msa1089880:CDS
ATCCTTATCTAAGTTTGTTT+AGG 0.329465 7_3:-3472382 Msa1089880:CDS
GCAGCAGCAACGATGGGTTT+AGG 0.339406 7_3:-3472932 Msa1089880:CDS
TTCTGCTCTGAACTCAAATA+AGG 0.346361 7_3:+3470548 None:intergenic
GAGAAACATAGGTTAAAGTT+TGG 0.355528 7_3:-3470871 Msa1089880:three_prime_UTR
TTCGGCGTTGTTTGTGTTGA+GGG 0.382973 7_3:+3472825 None:intergenic
GACGATATGAAGGTGAGAAA+TGG 0.388229 7_3:+3472879 None:intergenic
GAGGGGTTTGAGAGGTGCGG+CGG 0.399073 7_3:+3472757 None:intergenic
GGGTTTGAGAGGTGCGGCGG+GGG 0.403557 7_3:+3472760 None:intergenic
TAGCGGCGGGGTTGAAGAAA+TGG 0.403666 7_3:-3472508 Msa1089880:CDS
AGGGGTTTGAGAGGTGCGGC+GGG 0.416253 7_3:+3472758 None:intergenic
ACGATATGAAGGTGAGAAAT+GGG 0.422592 7_3:+3472880 None:intergenic
AACAACAACGTTCTTCTCTC+TGG 0.424828 7_3:-3472710 Msa1089880:intron
GGGTTTAGGATTGGGTATGG+GGG 0.428309 7_3:-3472918 Msa1089880:CDS
GTTTGTGTTGAGGGATGATT+AGG 0.430112 7_3:+3472834 None:intergenic
ATGGGTTTAGGATTGGGTAT+GGG 0.430784 7_3:-3472920 Msa1089880:CDS
GCAACGATGGGTTTAGGATT+GGG 0.431845 7_3:-3472926 Msa1089880:CDS
TTTGGTAGAATTTAGAAAAG+TGG 0.436325 7_3:-3470900 Msa1089880:exon
GACGGTGAACACGCCGTTGA+CGG 0.439588 7_3:-3472534 Msa1089880:CDS
CCGTTGACGGTTGTAGCGGC+GGG 0.441420 7_3:-3472521 Msa1089880:CDS
AGCAACGATGGGTTTAGGAT+TGG 0.449464 7_3:-3472927 Msa1089880:CDS
TGTCTTTCCCATGGAATGTT+GGG 0.454889 7_3:+3472434 None:intergenic
GGATGATTAGGTTATTAGGT+TGG 0.464532 7_3:+3472846 None:intergenic
TTGGTAGAATTTAGAAAAGT+GGG 0.466938 7_3:-3470899 Msa1089880:exon
CTCTCACTCAAAGAGATACA+AGG 0.470466 7_3:+3470523 None:intergenic
AAATAGAACAAGTGGTGGTT+CGG 0.476134 7_3:+3472807 None:intergenic
TCTGAACTCAAATAAGGAAT+CGG 0.489119 7_3:+3470554 None:intergenic
GGTTTAGGATTGGGTATGGG+GGG 0.490086 7_3:-3472917 Msa1089880:CDS
GCAATTGATACACAAAGGTC+CGG 0.490961 7_3:+3472611 None:intergenic
AGTGGGTTCTTGAGAAACAT+AGG 0.493842 7_3:-3470882 Msa1089880:three_prime_UTR
GGGGTTTGAGAGGTGCGGCG+GGG 0.496126 7_3:+3472759 None:intergenic
GTTGGTTTCCCAACATTCCA+TGG 0.512936 7_3:-3472442 Msa1089880:CDS
GACAATGGTTGTCTTTCCCA+TGG 0.515980 7_3:+3472425 None:intergenic
AAAGAGAGAAGACGATATGA+AGG 0.518353 7_3:+3472869 None:intergenic
ATAAAATACATGTTCAACAT+TGG 0.524350 7_3:-3470641 Msa1089880:three_prime_UTR
GATGGGTTTAGGATTGGGTA+TGG 0.526686 7_3:-3472921 Msa1089880:CDS
TTCCTAAACAAACTTAGATA+AGG 0.528049 7_3:+3472380 None:intergenic
TTCAATGGCAGCAGCAACGA+TGG 0.533900 7_3:-3472939 None:intergenic
GCCGTTGACGGTTGTAGCGG+CGG 0.535668 7_3:-3472522 Msa1089880:CDS
GTTCGGCGTTGTTTGTGTTG+AGG 0.535714 7_3:+3472824 None:intergenic
CGTCAACATTCTTCCACCAC+CGG 0.541309 7_3:-3472630 Msa1089880:CDS
AGTTATGTATGTGGTTAAGA+AGG 0.543086 7_3:-3470802 Msa1089880:three_prime_UTR
TTGGTTTCCCAACATTCCAT+GGG 0.548737 7_3:-3472441 Msa1089880:CDS
TCTAAATTCTACCAAAACGT+TGG 0.551378 7_3:+3470907 None:intergenic
GTATGTGGTTAAGAAGGCGT+TGG 0.552418 7_3:-3470796 Msa1089880:three_prime_UTR
CCCGCCGCTACAACCGTCAA+CGG 0.573983 7_3:+3472521 None:intergenic
TTGTCTTTCCCATGGAATGT+TGG 0.574451 7_3:+3472433 None:intergenic
AAAACAGCAAAAGCAAGAAG+AGG 0.574512 7_3:+3472320 None:intergenic
CACGCCGTTGACGGTTGTAG+CGG 0.575214 7_3:-3472525 Msa1089880:CDS
TGCTGTCATCGTTGATGAGG+AGG 0.577124 7_3:+3472738 None:intergenic
TCAATGGCAGCAGCAACGAT+GGG 0.589780 7_3:-3472938 Msa1089880:CDS
GCTGTCATCGTTGATGAGGA+GGG 0.593033 7_3:+3472739 None:intergenic
CTGTCATCGTTGATGAGGAG+GGG 0.602113 7_3:+3472740 None:intergenic
GATACACAAAGGTCCGGTGG+TGG 0.605205 7_3:+3472617 None:intergenic
GGCGGGGTTGAAGAAATGGT+TGG 0.623671 7_3:-3472504 Msa1089880:CDS
TCTCACTCAAAGAGATACAA+GGG 0.625891 7_3:+3470524 None:intergenic
TGCTGCTGTCATCGTTGATG+AGG 0.628580 7_3:+3472735 None:intergenic
GATTGAAATAGAACAAGTGG+TGG 0.631087 7_3:+3472802 None:intergenic
GTTGATTGAAATAGAACAAG+TGG 0.635554 7_3:+3472799 None:intergenic
TTGATGAGGAGGGGTTTGAG+AGG 0.635892 7_3:+3472749 None:intergenic
AAATGGTTGGATATTTACAG+TGG 0.642279 7_3:-3472491 Msa1089880:CDS
GAGGAGGGGTTTGAGAGGTG+CGG 0.643481 7_3:+3472754 None:intergenic
AGATCCCTAATTGCAGACAA+TGG 0.662621 7_3:+3472410 None:intergenic
ATTGATACACAAAGGTCCGG+TGG 0.691756 7_3:+3472614 None:intergenic
CTCACTCAAAGAGATACAAG+GGG 0.701135 7_3:+3470525 None:intergenic
GGATCTAAACAGGAACAGTG+AGG 0.722011 7_3:+3472279 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATCTTATATAGTTTA+GGG - chr7_3:3472110-3472129 Msa1089880:intron 10.0%
!! CTAATAATCTTATATAGTTT+AGG - chr7_3:3472109-3472128 Msa1089880:intron 15.0%
!! ATTATCAAAATCGAAAAAAT+TGG + chr7_3:3472831-3472850 None:intergenic 15.0%
!!! CACTTGTATATCTATTTTAT+TGG - chr7_3:3471189-3471208 Msa1089880:intron 20.0%
!!! GTATATCTATTTTATTGGAT+AGG - chr7_3:3471194-3471213 Msa1089880:intron 20.0%
!!! CGCATAATAATTTTAGAATA+TGG - chr7_3:3471471-3471490 Msa1089880:intron 20.0%
!! TCAGTAATAATTTGAGAAAA+TGG - chr7_3:3471604-3471623 Msa1089880:intron 20.0%
!!! TTAATATTTTCAAATCATGC+AGG + chr7_3:3471929-3471948 None:intergenic 20.0%
!! AATGTCAATATATAACAGTA+GGG + chr7_3:3472012-3472031 None:intergenic 20.0%
!! AAATGTCAATATATAACAGT+AGG + chr7_3:3472013-3472032 None:intergenic 20.0%
!!! TGTTGTGATTTTGAATATTT+TGG - chr7_3:3472403-3472422 Msa1089880:CDS 20.0%
!!! TTTTGGATGTTATTATTTTG+TGG - chr7_3:3472420-3472439 Msa1089880:CDS 20.0%
!!! ATACAATGTAATTTTCAGAT+TGG - chr7_3:3472569-3472588 Msa1089880:CDS 20.0%
!!! ATTTTCAGATTGGTATATTT+TGG - chr7_3:3472579-3472598 Msa1089880:CDS 20.0%
!! ATAAAATACATGTTCAACAT+TGG - chr7_3:3472764-3472783 Msa1089880:CDS 20.0%
!! ATTTTGCAATTGATACACAA+AGG + chr7_3:3470802-3470821 None:intergenic 25.0%
! CTTATATCATGAAAAAGACT+AGG - chr7_3:3470843-3470862 Msa1089880:three_prime_UTR 25.0%
!! ATCCTTATCTAAGTTTGTTT+AGG - chr7_3:3471023-3471042 Msa1089880:intron 25.0%
! TTCCTAAACAAACTTAGATA+AGG + chr7_3:3471028-3471047 None:intergenic 25.0%
!!! ATATCAAGAGTATCAAAAAC+AGG + chr7_3:3471061-3471080 None:intergenic 25.0%
! TCATAGGTGATAACAAAATT+CGG + chr7_3:3471698-3471717 None:intergenic 25.0%
! TCAAATATAACCAAATGTGT+CGG - chr7_3:3471787-3471806 Msa1089880:intron 25.0%
! GGATTTAACAAAAATGTTTG+TGG - chr7_3:3472065-3472084 Msa1089880:intron 25.0%
! TGTGGCTACTTATTAAATAT+CGG - chr7_3:3472083-3472102 Msa1089880:intron 25.0%
!! ACATAAATTTTCAGACTCAA+TGG + chr7_3:3472217-3472236 None:intergenic 25.0%
!! TGAAAGTTTTCTCCTAATTA+TGG - chr7_3:3472297-3472316 Msa1089880:CDS 25.0%
! TGTGAAATTCTACCATAATT+AGG + chr7_3:3472312-3472331 None:intergenic 25.0%
!!! TTATTATTTTGTGGTTGAAC+AGG - chr7_3:3472429-3472448 Msa1089880:CDS 25.0%
! TTTGGTAGAATTTAGAAAAG+TGG - chr7_3:3472505-3472524 Msa1089880:CDS 25.0%
! TTGGTAGAATTTAGAAAAGT+GGG - chr7_3:3472506-3472525 Msa1089880:CDS 25.0%
!!! TATTTTGGTAGTTATGTATG+TGG - chr7_3:3472594-3472613 Msa1089880:CDS 25.0%
!!! TATATGTTGTGTTTTGTTGT+TGG - chr7_3:3472650-3472669 Msa1089880:intron 25.0%
!!! ATATGTTGTGTTTTGTTGTT+GGG - chr7_3:3472651-3472670 Msa1089880:intron 25.0%
GTTGATTGAAATAGAACAAG+TGG + chr7_3:3470609-3470628 None:intergenic 30.0%
TATCATGAAAAAGACTAGGA+CGG - chr7_3:3470847-3470866 Msa1089880:three_prime_UTR 30.0%
AAATGGTTGGATATTTACAG+TGG - chr7_3:3470914-3470933 Msa1089880:CDS 30.0%
! TATTTACAGTGGTGTTTTGT+TGG - chr7_3:3470925-3470944 Msa1089880:CDS 30.0%
TGAGAAATGAAATACCTGTA+GGG + chr7_3:3471165-3471184 None:intergenic 30.0%
ATGAGAAATGAAATACCTGT+AGG + chr7_3:3471166-3471185 None:intergenic 30.0%
TTGCTGTAGTTGTATTTGAT+TGG - chr7_3:3471300-3471319 Msa1089880:intron 30.0%
TTTACTCAAACACGCAAAAA+GGG + chr7_3:3471365-3471384 None:intergenic 30.0%
ATAAGTGACAACTAAACTTG+GGG + chr7_3:3471388-3471407 None:intergenic 30.0%
CATAAGTGACAACTAAACTT+GGG + chr7_3:3471389-3471408 None:intergenic 30.0%
TCATAAGTGACAACTAAACT+TGG + chr7_3:3471390-3471409 None:intergenic 30.0%
! TAATTTGTAACCATGTGTGT+TGG - chr7_3:3471507-3471526 Msa1089880:intron 30.0%
CATAGGTGATAACAAAATTC+GGG + chr7_3:3471697-3471716 None:intergenic 30.0%
TATGTGTATATGTGCTTCAT+AGG + chr7_3:3471714-3471733 None:intergenic 30.0%
TATGAAGCACATATACACAT+AGG - chr7_3:3471713-3471732 Msa1089880:intron 30.0%
TTGACATTTGACAAGATCTT+AGG - chr7_3:3472024-3472043 Msa1089880:intron 30.0%
TGACATTTGACAAGATCTTA+GGG - chr7_3:3472025-3472044 Msa1089880:intron 30.0%
ATATAGTTTAGGGACTATGT+AGG - chr7_3:3472120-3472139 Msa1089880:intron 30.0%
AGAAAACTTTCATAGACAGA+TGG + chr7_3:3472289-3472308 None:intergenic 30.0%
CACAGATATAGGGTAAAAAA+TGG + chr7_3:3472343-3472362 None:intergenic 30.0%
TCTAAATTCTACCAAAACGT+TGG + chr7_3:3472501-3472520 None:intergenic 30.0%
GAGAAACATAGGTTAAAGTT+TGG - chr7_3:3472534-3472553 Msa1089880:CDS 30.0%
AGTTATGTATGTGGTTAAGA+AGG - chr7_3:3472603-3472622 Msa1089880:CDS 30.0%
TCTGAACTCAAATAAGGAAT+CGG + chr7_3:3472854-3472873 None:intergenic 30.0%
ACGATATGAAGGTGAGAAAT+GGG + chr7_3:3470528-3470547 None:intergenic 35.0%
AAAGAGAGAAGACGATATGA+AGG + chr7_3:3470539-3470558 None:intergenic 35.0%
GGATGATTAGGTTATTAGGT+TGG + chr7_3:3470562-3470581 None:intergenic 35.0%
TGAGGGATGATTAGGTTATT+AGG + chr7_3:3470566-3470585 None:intergenic 35.0%
AAATAGAACAAGTGGTGGTT+CGG + chr7_3:3470601-3470620 None:intergenic 35.0%
GATTGAAATAGAACAAGTGG+TGG + chr7_3:3470606-3470625 None:intergenic 35.0%
TGCTTTGATACATAAAAGCG+CGG + chr7_3:3470753-3470772 None:intergenic 35.0%
ATCATGAAAAAGACTAGGAC+GGG - chr7_3:3470848-3470867 Msa1089880:three_prime_UTR 35.0%
ACAACCATTGTCTGCAATTA+GGG - chr7_3:3470991-3471010 Msa1089880:intron 35.0%
!! TCAAGAGTATCAAAAACAGG+TGG + chr7_3:3471058-3471077 None:intergenic 35.0%
AAAACAGCAAAAGCAAGAAG+AGG + chr7_3:3471088-3471107 None:intergenic 35.0%
!!! TCTTCTTGCTTTTGCTGTTT+TGG - chr7_3:3471087-3471106 Msa1089880:intron 35.0%
!!! CTTCTTGCTTTTGCTGTTTT+GGG - chr7_3:3471088-3471107 Msa1089880:intron 35.0%
AATGAAATACCTGTAGGGAT+GGG + chr7_3:3471160-3471179 None:intergenic 35.0%
AAATGAAATACCTGTAGGGA+TGG + chr7_3:3471161-3471180 None:intergenic 35.0%
GTTTACTCAAACACGCAAAA+AGG + chr7_3:3471366-3471385 None:intergenic 35.0%
CTTACATGTGAACTCATTAG+CGG + chr7_3:3471449-3471468 None:intergenic 35.0%
TACTGTAACCTTATTCGTAG+AGG - chr7_3:3471635-3471654 Msa1089880:intron 35.0%
AAGGATATCCTCTACGAATA+AGG + chr7_3:3471646-3471665 None:intergenic 35.0%
ATAAGTAACACACTGTCGAA+AGG + chr7_3:3471665-3471684 None:intergenic 35.0%
AATATAACCAAATGTGTCGG+AGG - chr7_3:3471790-3471809 Msa1089880:intron 35.0%
TTTACCCTATATCTGTGTTG+TGG - chr7_3:3472346-3472365 Msa1089880:CDS 35.0%
! AGAATCTTCTTCCAACGTTT+TGG - chr7_3:3472487-3472506 Msa1089880:CDS 35.0%
! TTCTGCTCTGAACTCAAATA+AGG + chr7_3:3472860-3472879 None:intergenic 35.0%
TCTCACTCAAAGAGATACAA+GGG + chr7_3:3472884-3472903 None:intergenic 35.0%
! ATGGGTTTAGGATTGGGTAT+GGG - chr7_3:3470485-3470504 Msa1089880:three_prime_UTR 40.0%
GACGATATGAAGGTGAGAAA+TGG + chr7_3:3470529-3470548 None:intergenic 40.0%
GTTTGTGTTGAGGGATGATT+AGG + chr7_3:3470574-3470593 None:intergenic 40.0%
AACAACAACGTTCTTCTCTC+TGG - chr7_3:3470695-3470714 Msa1089880:three_prime_UTR 40.0%
! TTTGATACATAAAAGCGCGG+TGG + chr7_3:3470750-3470769 None:intergenic 40.0%
GCAATTGATACACAAAGGTC+CGG + chr7_3:3470797-3470816 None:intergenic 40.0%
TCATGAAAAAGACTAGGACG+GGG - chr7_3:3470849-3470868 Msa1089880:three_prime_UTR 40.0%
!! ACAGTGGTGTTTTGTTGGTT+AGG - chr7_3:3470930-3470949 Msa1089880:CDS 40.0%
!! CAGTGGTGTTTTGTTGGTTA+GGG - chr7_3:3470931-3470950 Msa1089880:CDS 40.0%
!!! TGGTTAGGGTTTTGTTGAGT+TGG - chr7_3:3470945-3470964 Msa1089880:CDS 40.0%
TTGGTTTCCCAACATTCCAT+GGG - chr7_3:3470964-3470983 Msa1089880:intron 40.0%
TGTCTTTCCCATGGAATGTT+GGG + chr7_3:3470974-3470993 None:intergenic 40.0%
TTGTCTTTCCCATGGAATGT+TGG + chr7_3:3470975-3470994 None:intergenic 40.0%
GACAACCATTGTCTGCAATT+AGG - chr7_3:3470990-3471009 Msa1089880:intron 40.0%
AGATCCCTAATTGCAGACAA+TGG + chr7_3:3470998-3471017 None:intergenic 40.0%
AAGTCTCATCCCAGTAAGTA+GGG + chr7_3:3471278-3471297 None:intergenic 40.0%
! AGTGTTGAGTCTAGTGTTAG+GGG + chr7_3:3471414-3471433 None:intergenic 40.0%
! CAGTGTTGAGTCTAGTGTTA+GGG + chr7_3:3471415-3471434 None:intergenic 40.0%
! TCAGTGTTGAGTCTAGTGTT+AGG + chr7_3:3471416-3471435 None:intergenic 40.0%
ACTGACATGTGTTGGATGTT+AGG - chr7_3:3471837-3471856 Msa1089880:intron 40.0%
CCACATACACTTCTTATCGA+AGG + chr7_3:3471867-3471886 None:intergenic 40.0%
! CCTTCGATAAGAAGTGTATG+TGG - chr7_3:3471864-3471883 Msa1089880:intron 40.0%
TAGGGACTAACTAATGTGAC+AGG - chr7_3:3472043-3472062 Msa1089880:intron 40.0%
AGGGACTAACTAATGTGACA+GGG - chr7_3:3472044-3472063 Msa1089880:intron 40.0%
TAGTTTAGGGACTATGTAGG+AGG - chr7_3:3472123-3472142 Msa1089880:intron 40.0%
! TTTTGTGGTTGAACAGGTGT+TGG - chr7_3:3472435-3472454 Msa1089880:CDS 40.0%
! AGTGGGTTCTTGAGAAACAT+AGG - chr7_3:3472523-3472542 Msa1089880:CDS 40.0%
!!! GTTGTGTTTTGTTGTTGGGT+TGG - chr7_3:3472655-3472674 Msa1089880:intron 40.0%
ATCGAAAAAATTGGCGCAGA+TGG + chr7_3:3472822-3472841 None:intergenic 40.0%
CTCACTCAAAGAGATACAAG+GGG + chr7_3:3472883-3472902 None:intergenic 40.0%
CTCTCACTCAAAGAGATACA+AGG + chr7_3:3472885-3472904 None:intergenic 40.0%
CTCTTTGAGTGAGAGAATTC+TGG - chr7_3:3472890-3472909 Msa1089880:CDS 40.0%
! AGCAACGATGGGTTTAGGAT+TGG - chr7_3:3470478-3470497 Msa1089880:three_prime_UTR 45.0%
! GCAACGATGGGTTTAGGATT+GGG - chr7_3:3470479-3470498 Msa1089880:three_prime_UTR 45.0%
! GATGGGTTTAGGATTGGGTA+TGG - chr7_3:3470484-3470503 Msa1089880:three_prime_UTR 45.0%
! TGGGTTTAGGATTGGGTATG+GGG - chr7_3:3470486-3470505 Msa1089880:three_prime_UTR 45.0%
TTCGGCGTTGTTTGTGTTGA+GGG + chr7_3:3470583-3470602 None:intergenic 45.0%
ATTGATACACAAAGGTCCGG+TGG + chr7_3:3470794-3470813 None:intergenic 45.0%
! GTTGGTTTCCCAACATTCCA+TGG - chr7_3:3470963-3470982 Msa1089880:intron 45.0%
GACAATGGTTGTCTTTCCCA+TGG + chr7_3:3470983-3471002 None:intergenic 45.0%
GGATCTAAACAGGAACAGTG+AGG + chr7_3:3471129-3471148 None:intergenic 45.0%
AATACCTGTAGGGATGGGAT+GGG + chr7_3:3471155-3471174 None:intergenic 45.0%
AAATACCTGTAGGGATGGGA+TGG + chr7_3:3471156-3471175 None:intergenic 45.0%
AGTCTCATCCCAGTAAGTAG+GGG + chr7_3:3471277-3471296 None:intergenic 45.0%
CAAGTCTCATCCCAGTAAGT+AGG + chr7_3:3471279-3471298 None:intergenic 45.0%
AAACATGCCTCCGACACATT+TGG + chr7_3:3471800-3471819 None:intergenic 45.0%
! ATGTCAGTGTCGGACACATT+TGG + chr7_3:3471825-3471844 None:intergenic 45.0%
CATCCAACACATGTCAGTGT+CGG + chr7_3:3471835-3471854 None:intergenic 45.0%
!! AAGTGTATGTGGTGCTGCAT+AGG - chr7_3:3471875-3471894 Msa1089880:intron 45.0%
TAGGCTGTCACTCTTTCTCT+TGG - chr7_3:3471894-3471913 Msa1089880:intron 45.0%
CGTGCCACAACACAGATATA+GGG + chr7_3:3472353-3472372 None:intergenic 45.0%
ACGTGCCACAACACAGATAT+AGG + chr7_3:3472354-3472373 None:intergenic 45.0%
! GTATGTGGTTAAGAAGGCGT+TGG - chr7_3:3472609-3472628 Msa1089880:CDS 45.0%
!! TAAATGATATAAAAATAATT+AGG + chr7_3:3472243-3472262 None:intergenic 5.0%
! GGGTTTAGGATTGGGTATGG+GGG - chr7_3:3470487-3470506 Msa1089880:three_prime_UTR 50.0%
! GGTTTAGGATTGGGTATGGG+GGG - chr7_3:3470488-3470507 Msa1089880:three_prime_UTR 50.0%
GTTCGGCGTTGTTTGTGTTG+AGG + chr7_3:3470584-3470603 None:intergenic 50.0%
TTGATGAGGAGGGGTTTGAG+AGG + chr7_3:3470659-3470678 None:intergenic 50.0%
! CTGTCATCGTTGATGAGGAG+GGG + chr7_3:3470668-3470687 None:intergenic 50.0%
! GCTGTCATCGTTGATGAGGA+GGG + chr7_3:3470669-3470688 None:intergenic 50.0%
! TGCTGTCATCGTTGATGAGG+AGG + chr7_3:3470670-3470689 None:intergenic 50.0%
TGCTGCTGTCATCGTTGATG+AGG + chr7_3:3470673-3470692 None:intergenic 50.0%
TAGGGTTGTAACGGTTCGAG+TGG + chr7_3:3470723-3470742 None:intergenic 50.0%
GGTGGCGAATAGGGTTGTAA+CGG + chr7_3:3470732-3470751 None:intergenic 50.0%
! TAAAAGCGCGGTGGCGAATA+GGG + chr7_3:3470741-3470760 None:intergenic 50.0%
! ATAAAAGCGCGGTGGCGAAT+AGG + chr7_3:3470742-3470761 None:intergenic 50.0%
CGTCAACATTCTTCCACCAC+CGG - chr7_3:3470775-3470794 Msa1089880:three_prime_UTR 50.0%
GAAAAAGACTAGGACGGGGA+CGG - chr7_3:3470853-3470872 Msa1089880:three_prime_UTR 50.0%
!! GCTGTTTTGGGTACTCTTGC+TGG - chr7_3:3471100-3471119 Msa1089880:intron 50.0%
GGATGGGATGGGATCTAAAC+AGG + chr7_3:3471139-3471158 None:intergenic 50.0%
GTCTCATCCCAGTAAGTAGG+GGG + chr7_3:3471276-3471295 None:intergenic 50.0%
GACACAGAGACCAACACACA+TGG + chr7_3:3471520-3471539 None:intergenic 50.0%
! TGTGTCATTCCGTCACGTGT+GGG - chr7_3:3471534-3471553 Msa1089880:intron 50.0%
TGTCCGACACTGACATGTGT+TGG - chr7_3:3471829-3471848 Msa1089880:intron 50.0%
AGGGACTATGTAGGAGGTAG+TGG - chr7_3:3472129-3472148 Msa1089880:intron 50.0%
! GCAGCAGCAACGATGGGTTT+AGG - chr7_3:3470473-3470492 Msa1089880:three_prime_UTR 55.0%
GATACACAAAGGTCCGGTGG+TGG + chr7_3:3470791-3470810 None:intergenic 55.0%
TAGCGGCGGGGTTGAAGAAA+TGG - chr7_3:3470897-3470916 Msa1089880:exon 55.0%
GGCGGGGTTGAAGAAATGGT+TGG - chr7_3:3470901-3470920 Msa1089880:exon 55.0%
CTGTAGGGATGGGATGGGAT+GGG + chr7_3:3471150-3471169 None:intergenic 55.0%
GGGTCGGGTACATGGATCAA+AGG + chr7_3:3471256-3471275 None:intergenic 55.0%
TAAGTAGGGGGTCGGGTACA+TGG + chr7_3:3471264-3471283 None:intergenic 55.0%
TACCCGACCCCCTACTTACT+GGG - chr7_3:3471266-3471285 Msa1089880:intron 55.0%
ATCCCAGTAAGTAGGGGGTC+GGG + chr7_3:3471271-3471290 None:intergenic 55.0%
CATCCCAGTAAGTAGGGGGT+CGG + chr7_3:3471272-3471291 None:intergenic 55.0%
! CTGTGTCATTCCGTCACGTG+TGG - chr7_3:3471533-3471552 Msa1089880:intron 55.0%
TCATTCCGTCACGTGTGGGA+GGG - chr7_3:3471538-3471557 Msa1089880:intron 55.0%
GAGGAGGGGTTTGAGAGGTG+CGG + chr7_3:3470654-3470673 None:intergenic 60.0%
GACGGTGAACACGCCGTTGA+CGG - chr7_3:3470871-3470890 Msa1089880:three_prime_UTR 60.0%
CACGCCGTTGACGGTTGTAG+CGG - chr7_3:3470880-3470899 Msa1089880:three_prime_UTR 60.0%
CCTGTAGGGATGGGATGGGA+TGG + chr7_3:3471151-3471170 None:intergenic 60.0%
CCATCCCATCCCATCCCTAC+AGG - chr7_3:3471148-3471167 Msa1089880:intron 60.0%
GTACCCGACCCCCTACTTAC+TGG - chr7_3:3471265-3471284 Msa1089880:intron 60.0%
GTCATTCCGTCACGTGTGGG+AGG - chr7_3:3471537-3471556 Msa1089880:intron 60.0%
AGTGTCCCTCCCACACGTGA+CGG + chr7_3:3471546-3471565 None:intergenic 60.0%
!! CGGGGGTGAGGGTGGTTTTG+TGG + chr7_3:3470631-3470650 None:intergenic 65.0%
! AGGGGTTTGAGAGGTGCGGC+GGG + chr7_3:3470650-3470669 None:intergenic 65.0%
! GAGGGGTTTGAGAGGTGCGG+CGG + chr7_3:3470651-3470670 None:intergenic 65.0%
GCCGTTGACGGTTGTAGCGG+CGG - chr7_3:3470883-3470902 Msa1089880:three_prime_UTR 65.0%
CCCGCCGCTACAACCGTCAA+CGG + chr7_3:3470887-3470906 None:intergenic 65.0%
CCGTTGACGGTTGTAGCGGC+GGG - chr7_3:3470884-3470903 Msa1089880:three_prime_UTR 65.0%
CGTTGACGGTTGTAGCGGCG+GGG - chr7_3:3470885-3470904 Msa1089880:three_prime_UTR 65.0%
! GGGTTTGAGAGGTGCGGCGG+GGG + chr7_3:3470648-3470667 None:intergenic 70.0%
! GGGGTTTGAGAGGTGCGGCG+GGG + chr7_3:3470649-3470668 None:intergenic 70.0%
! GAGAGGTGCGGCGGGGGTGA+GGG + chr7_3:3470642-3470661 None:intergenic 75.0%
! TGAGAGGTGCGGCGGGGGTG+AGG + chr7_3:3470643-3470662 None:intergenic 75.0%
! AGGTGCGGCGGGGGTGAGGG+TGG + chr7_3:3470639-3470658 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 3470470 3472957 3470470 ID=Msa1089880;Name=Msa1089880
chr7_3 mRNA 3470470 3472957 3470470 ID=Msa1089880-mRNA-1;Parent=Msa1089880;Name=Msa1089880-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0.25|1|0|0|4|438|224
chr7_3 exon 3470470 3470976 3470470 ID=Msa1089880-mRNA-1:exon:1363;Parent=Msa1089880-mRNA-1
chr7_3 exon 3472289 3472475 3472289 ID=Msa1089880-mRNA-1:exon:1362;Parent=Msa1089880-mRNA-1
chr7_3 exon 3472485 3472656 3472485 ID=Msa1089880-mRNA-1:exon:1361;Parent=Msa1089880-mRNA-1
chr7_3 exon 3472711 3472957 3472711 ID=Msa1089880-mRNA-1:exon:1360;Parent=Msa1089880-mRNA-1
chr7_3 CDS 3472711 3472957 3472711 ID=Msa1089880-mRNA-1:cds;Parent=Msa1089880-mRNA-1
chr7_3 CDS 3472485 3472656 3472485 ID=Msa1089880-mRNA-1:cds;Parent=Msa1089880-mRNA-1
chr7_3 CDS 3472289 3472475 3472289 ID=Msa1089880-mRNA-1:cds;Parent=Msa1089880-mRNA-1
chr7_3 CDS 3470908 3470976 3470908 ID=Msa1089880-mRNA-1:cds;Parent=Msa1089880-mRNA-1
chr7_3 three_prime_UTR 3470470 3470907 3470470 ID=Msa1089880-mRNA-1:three_prime_utr;Parent=Msa1089880-mRNA-1
Gene Sequence

>Msa1089880

ATGGCAGCAGCAACGATGGGTTTAGGATTGGGTATGGGGGGTATGACTGTAACTTCCCATTTCTCACCTTCATATCGTCTTCTCTCTTTCCAACCTAATAACCTAATCATCCCTCAACACAAACAACGCCGAACCACCACTTGTTCTATTTCAATCAACCACAAAACCACCCTCACCCCCGCCGCACCTCTCAAACCCCTCCTCATCAACGATGACAGCAGCAACAACAACAACGTTCTTCTCTCTGCATTCGTCAACATTCTTCCACCACCGGACCTTTGTGTATCAATTGCAAAATCATCTTCGTCGCTTTGTTTTGCTTATATCATGAAAAAGACTAGGACGGGGACGGTGAACACGCCGTTGACGGTTGTAGCGGCGGGGTTGAAGAAATGGTTGGATATTTACAGTGGTGTTTTGGTTTTGTTGAGTTGGTTTCCCAACATTCCATGGGAAAGACAACCATTGTCTGCAATTAGGGATCTTTGTGATCCTTATCTAAGTTTGTTTAGGAATGTTGTTCCACCTGTTTTTGATACTCTTGATATTAGTCCTCTTCTTGCTTTTGCTGTTTTGGGTACTCTTGCTGGTCTCCTCACTGTTCCTGTGTTGGCTACTAAAGAATGTTTTCATGAACGACAAAGAATCTTCTTCCAACGTTTTGGTAGAATTTAG

Protein sequence

>Msa1089880

MAAATMGLGLGMGGMTVTSHFSPSYRLLSFQPNNLIIPQHKQRRTTTCSISINHKTTLTPAAPLKPLLINDDSSNNNNVLLSAFVNILPPPDLCVSIAKSSSSLCFAYIMKKTRTGTVNTPLTVVAAGLKKWLDIYSGVLVLLSWFPNIPWERQPLSAIRDLCDPYLSLFRNVVPPVFDTLDISPLLAFAVLGTLAGLLTVPVLATKECFHERQRIFFQRFGRI*