AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1091460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091460 MtrunA17_Chr7g0215351 94.737 171 9 0 11 181 11 181 1.41e-124 348
Msa1091460 MtrunA17_Chr7g0215381 94.152 171 10 0 11 181 11 181 2.63e-124 347
Msa1091460 MtrunA17_Chr7g0215421 94.737 171 9 0 11 181 11 181 2.66e-124 347
Msa1091460 MtrunA17_Chr7g0215361 94.706 170 9 0 12 181 12 181 5.74e-124 347
Msa1091460 MtrunA17_Chr7g0215431 94.118 170 10 0 12 181 12 181 1.13e-122 343
Msa1091460 MtrunA17_Chr6g0457471 85.475 179 25 1 4 181 2 180 3.16e-115 324
Msa1091460 MtrunA17_Chr6g0457461 84.916 179 23 2 4 181 2 177 2.24e-112 317
Msa1091460 MtrunA17_Chr4g0072241 50.641 156 73 3 28 180 15 169 8.61e-58 179
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091460 AT1G67090.1 71.429 182 47 2 1 181 1 178 6.76e-94 271
Msa1091460 AT5G38430.1 70.879 182 48 2 1 181 1 178 6.40e-93 268
Msa1091460 AT5G38430.2 70.879 182 48 2 1 181 1 178 6.40e-93 268
Msa1091460 AT5G38410.1 70.330 182 49 2 1 181 1 178 1.35e-92 268
Msa1091460 AT5G38420.1 70.330 182 49 2 1 181 1 178 3.66e-92 266
Msa1091460 AT5G38410.3 68.449 187 49 3 1 181 1 183 2.64e-90 262
Msa1091460 AT5G38410.2 67.582 182 47 3 1 181 1 171 1.12e-85 249
Msa1091460 AT1G67090.2 65.217 115 35 2 1 114 1 111 1.04e-45 147

Find 69 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATCTCATGTGGTTAATA+TGG 0.180964 7_3:+6780797 None:intergenic
ATTAATTATACCAATGGTTT+TGG 0.223375 7_3:-6780845 None:intergenic
TACTAACTGAAGTGATATTA+AGG 0.234714 7_3:+6782089 Msa1091460:three_prime_UTR
AAGAAGTTGATTACCTTATA+AGG 0.266546 7_3:+6781432 Msa1091460:CDS
TCTCAAATTTGTATTATCTA+TGG 0.269656 7_3:+6782023 Msa1091460:three_prime_UTR
CAACCCATCCCTTCCTTATA+AGG 0.273690 7_3:-6781445 None:intergenic
TAGCTATTTATATATTGTTT+TGG 0.297586 7_3:-6780880 None:intergenic
TCCTTGTTGATCTTTGTAAC+TGG 0.307724 7_3:-6781071 None:intergenic
GGCGCGGTGGCTCCATTTGT+TGG 0.347642 7_3:+6781026 Msa1091460:CDS
ATATAGGTGTGGCCTCCTAT+TGG 0.366439 7_3:+6781350 Msa1091460:intron
GAAGGGATGGGTTGCTTGCT+TGG 0.368783 7_3:+6781454 Msa1091460:CDS
GATACTATGATGGACGTTAC+TGG 0.371866 7_3:+6781666 Msa1091460:CDS
TTCTTTCGCCAATTGTTCTC+TGG 0.378466 7_3:-6781414 None:intergenic
TATAGGTGTGGCCTCCTATT+GGG 0.392616 7_3:+6781351 Msa1091460:intron
CGATTCTTCTCAAGTGTTGA+AGG 0.396980 7_3:+6781721 Msa1091460:CDS
GATTTCAAAATGCAAATGTA+TGG 0.398278 7_3:+6781964 Msa1091460:three_prime_UTR
TCTTCCACCATTGCTTGTAA+TGG 0.401668 7_3:-6781102 None:intergenic
GCCAATTGTTCTCTGGTCAA+TGG 0.405140 7_3:-6781407 None:intergenic
ACCATTGACCAGAGAACAAT+TGG 0.409622 7_3:+6781406 Msa1091460:CDS
ATGTGGAAGTTGCCTTTGTT+TGG 0.411503 7_3:+6781692 Msa1091460:CDS
ACTAACTGAAGTGATATTAA+GGG 0.424631 7_3:+6782090 Msa1091460:three_prime_UTR
TCAAACTTCTTCTTCCCAAT+AGG 0.428544 7_3:-6781365 None:intergenic
GTTGGACTCAAGTCCATGGC+TGG 0.431505 7_3:+6781044 Msa1091460:CDS
ATAAGAGTTAATAAATGAAA+TGG 0.440450 7_3:+6781987 Msa1091460:three_prime_UTR
ATGATACGGACAAAGGCATC+AGG 0.443523 7_3:-6781770 None:intergenic
CTTCAACACTTGAGAAGAAT+CGG 0.461194 7_3:-6781720 None:intergenic
CGCGCCTCGTCGGTTCAATC+CGG 0.461844 7_3:+6781005 Msa1091460:CDS
TAATCACTCTCTGCTGCCAT+TGG 0.470602 7_3:+6781872 Msa1091460:three_prime_UTR
GATGCCTTTGTCCGTATCAT+CGG 0.484184 7_3:+6781773 Msa1091460:CDS
CTCAAAATTTAGTAGACTGC+AGG 0.495678 7_3:-6781845 None:intergenic
CCTTGTTGATCTTTGTAACT+GGG 0.505692 7_3:-6781070 None:intergenic
ATTACCTTATAAGGAAGGGA+TGG 0.507588 7_3:+6781441 Msa1091460:CDS
ATTTGTTGGACTCAAGTCCA+TGG 0.520007 7_3:+6781040 Msa1091460:CDS
AGTTGATTACCTTATAAGGA+AGG 0.522099 7_3:+6781436 Msa1091460:CDS
TTTCTGATTAATTATACCAA+TGG 0.524266 7_3:-6780851 None:intergenic
ATGGACTTGAGTCCAACAAA+TGG 0.526746 7_3:-6781038 None:intergenic
TCCACCATTGCTTGTAATGG+AGG 0.530318 7_3:-6781099 None:intergenic
AACTTCTTCTTCCCAATAGG+AGG 0.534518 7_3:-6781362 None:intergenic
CATAGTATCCTGGTGACTTG+TGG 0.542155 7_3:-6781652 None:intergenic
TACAGTTAACCGCGCCTCGT+CGG 0.543383 7_3:+6780995 Msa1091460:CDS
CGTGAGAACCACAAGTCACC+AGG 0.544938 7_3:+6781644 Msa1091460:CDS
TTACCTTATAAGGAAGGGAT+GGG 0.559428 7_3:+6781442 Msa1091460:CDS
AACAAATGGAGCCACCGCGC+CGG 0.560979 7_3:-6781024 None:intergenic
GTTGATTACCTTATAAGGAA+GGG 0.567383 7_3:+6781437 Msa1091460:CDS
TAACGTCCATCATAGTATCC+TGG 0.569613 7_3:-6781662 None:intergenic
AAGTCACCAGGATACTATGA+TGG 0.574009 7_3:+6781656 Msa1091460:CDS
CGGATTGAACCGACGAGGCG+CGG 0.577823 7_3:-6781004 None:intergenic
CGTTGTCGAATCCGATGATA+CGG 0.579522 7_3:-6781784 None:intergenic
CTGGTGACTTGTGGTTCTCA+CGG 0.595328 7_3:-6781643 None:intergenic
AACTGTAGTCACAGCTGAAG+AGG 0.598151 7_3:-6780979 None:intergenic
GAATCGGTTGCTCCAAACAA+AGG 0.598394 7_3:-6781704 None:intergenic
ATTGTGAAAATGATAAACAT+TGG 0.600821 7_3:-6780822 None:intergenic
AATTGTTCTCTGGTCAATGG+TGG 0.600961 7_3:-6781404 None:intergenic
ATTACCTCCATTACAAGCAA+TGG 0.601253 7_3:+6781095 Msa1091460:CDS
CTAACTGAAGTGATATTAAG+GGG 0.608939 7_3:+6782091 Msa1091460:three_prime_UTR
TTGCTTGGAATTTGAGACCG+AGG 0.613015 7_3:+6781469 Msa1091460:CDS
ACCTCCATTACAAGCAATGG+TGG 0.613355 7_3:+6781098 Msa1091460:CDS
TAATTAACAATTAACAACAA+TGG 0.615285 7_3:+6780941 Msa1091460:exon
TGTAACTGGGAAGCCAGCCA+TGG 0.615947 7_3:-6781057 None:intergenic
GTTCTCTGGTCAATGGTGGA+AGG 0.618328 7_3:-6781400 None:intergenic
GTCGGTTCAATCCGGCGCGG+TGG 0.622925 7_3:+6781013 Msa1091460:CDS
TGGAAGAGTAAACTGCATGC+AGG 0.652563 7_3:+6781118 Msa1091460:CDS
AGCTGAAGAGGAGATCATAG+AGG 0.655372 7_3:-6780967 None:intergenic
TGATACGGACAAAGGCATCA+GGG 0.656050 7_3:-6781769 None:intergenic
CCCAGTTACAAAGATCAACA+AGG 0.670594 7_3:+6781070 Msa1091460:CDS
CGCGCCGGATTGAACCGACG+AGG 0.686777 7_3:-6781009 None:intergenic
GAATCCGATGATACGGACAA+AGG 0.687909 7_3:-6781777 None:intergenic
CTCGTCGGTTCAATCCGGCG+CGG 0.728671 7_3:+6781010 Msa1091460:CDS
ATGGACGTTACTGGACAATG+TGG 0.742197 7_3:+6781675 Msa1091460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATATATTGTTTTGGAAT+TGG - chr7_3:6780877-6780896 None:intergenic 15.0%
!!! TAGCTATTTATATATTGTTT+TGG - chr7_3:6780883-6780902 None:intergenic 15.0%
!! TAATTAACAATTAACAACAA+TGG + chr7_3:6780941-6780960 Msa1091460:exon 15.0%
!!! ATAATGTACAAAGTTTTAAT+TGG - chr7_3:6781195-6781214 None:intergenic 15.0%
!! ATTAAAACTTTGTACATTAT+TGG + chr7_3:6781195-6781214 Msa1091460:intron 15.0%
!!! GATTTCATTTTTTTTTCATA+AGG + chr7_3:6781240-6781259 Msa1091460:intron 15.0%
!! ATAAGAGTTAATAAATGAAA+TGG + chr7_3:6781987-6782006 Msa1091460:three_prime_UTR 15.0%
!!! TTTATATATTGTTTTGGAAT+TGG - chr7_3:6780877-6780896 None:intergenic 15.0%
!!! TAGCTATTTATATATTGTTT+TGG - chr7_3:6780883-6780902 None:intergenic 15.0%
!! TAATTAACAATTAACAACAA+TGG + chr7_3:6780941-6780960 Msa1091460:exon 15.0%
!!! ATAATGTACAAAGTTTTAAT+TGG - chr7_3:6781195-6781214 None:intergenic 15.0%
!! ATTAAAACTTTGTACATTAT+TGG + chr7_3:6781195-6781214 Msa1091460:intron 15.0%
!!! GATTTCATTTTTTTTTCATA+AGG + chr7_3:6781240-6781259 Msa1091460:intron 15.0%
!! ATAAGAGTTAATAAATGAAA+TGG + chr7_3:6781987-6782006 Msa1091460:three_prime_UTR 15.0%
!! ATTGTGAAAATGATAAACAT+TGG - chr7_3:6780825-6780844 None:intergenic 20.0%
!!! ATTAATTATACCAATGGTTT+TGG - chr7_3:6780848-6780867 None:intergenic 20.0%
!! TTTCTGATTAATTATACCAA+TGG - chr7_3:6780854-6780873 None:intergenic 20.0%
!! AATAACATTAATAGAGTCAT+TGG + chr7_3:6781276-6781295 Msa1091460:intron 20.0%
!! ATGTACAAAAGATTAAGTTA+GGG - chr7_3:6781323-6781342 None:intergenic 20.0%
!! AATGTACAAAAGATTAAGTT+AGG - chr7_3:6781324-6781343 None:intergenic 20.0%
!! TTTGTACATTACTACTATAT+AGG + chr7_3:6781334-6781353 Msa1091460:intron 20.0%
!!! CTCAAATGGATTTTAAATAA+AGG - chr7_3:6781573-6781592 None:intergenic 20.0%
!! TCTCAAATTTGTATTATCTA+TGG + chr7_3:6782023-6782042 Msa1091460:three_prime_UTR 20.0%
!!! CTTTCTGAAATTTGTTTTTA+TGG + chr7_3:6782052-6782071 Msa1091460:three_prime_UTR 20.0%
!! ATTGTGAAAATGATAAACAT+TGG - chr7_3:6780825-6780844 None:intergenic 20.0%
!!! ATTAATTATACCAATGGTTT+TGG - chr7_3:6780848-6780867 None:intergenic 20.0%
!! TTTCTGATTAATTATACCAA+TGG - chr7_3:6780854-6780873 None:intergenic 20.0%
!! AATAACATTAATAGAGTCAT+TGG + chr7_3:6781276-6781295 Msa1091460:intron 20.0%
!! ATGTACAAAAGATTAAGTTA+GGG - chr7_3:6781323-6781342 None:intergenic 20.0%
!! AATGTACAAAAGATTAAGTT+AGG - chr7_3:6781324-6781343 None:intergenic 20.0%
!! TTTGTACATTACTACTATAT+AGG + chr7_3:6781334-6781353 Msa1091460:intron 20.0%
!!! CTCAAATGGATTTTAAATAA+AGG - chr7_3:6781573-6781592 None:intergenic 20.0%
!! TCTCAAATTTGTATTATCTA+TGG + chr7_3:6782023-6782042 Msa1091460:three_prime_UTR 20.0%
!!! CTTTCTGAAATTTGTTTTTA+TGG + chr7_3:6782052-6782071 Msa1091460:three_prime_UTR 20.0%
! TGTACAAAAGATTAAGTTAG+GGG - chr7_3:6781322-6781341 None:intergenic 25.0%
!! AAGAAGTTGATTACCTTATA+AGG + chr7_3:6781432-6781451 Msa1091460:CDS 25.0%
! AGTAAATGAATATTAGACCT+CGG - chr7_3:6781489-6781508 None:intergenic 25.0%
!!! AAAATCCATTTGAGTTTTGA+TGG + chr7_3:6781579-6781598 Msa1091460:intron 25.0%
! AGAAAAAAATGTTCTTCCAA+TGG - chr7_3:6781891-6781910 None:intergenic 25.0%
!!! TTATGTCTTCCTTTGTTTTT+TGG + chr7_3:6781929-6781948 Msa1091460:three_prime_UTR 25.0%
! GATTTCAAAATGCAAATGTA+TGG + chr7_3:6781964-6781983 Msa1091460:three_prime_UTR 25.0%
! TACTAACTGAAGTGATATTA+AGG + chr7_3:6782089-6782108 Msa1091460:three_prime_UTR 25.0%
! TGTACAAAAGATTAAGTTAG+GGG - chr7_3:6781322-6781341 None:intergenic 25.0%
!! AAGAAGTTGATTACCTTATA+AGG + chr7_3:6781432-6781451 Msa1091460:CDS 25.0%
! AGTAAATGAATATTAGACCT+CGG - chr7_3:6781489-6781508 None:intergenic 25.0%
!!! AAAATCCATTTGAGTTTTGA+TGG + chr7_3:6781579-6781598 Msa1091460:intron 25.0%
! AGAAAAAAATGTTCTTCCAA+TGG - chr7_3:6781891-6781910 None:intergenic 25.0%
!!! TTATGTCTTCCTTTGTTTTT+TGG + chr7_3:6781929-6781948 Msa1091460:three_prime_UTR 25.0%
! GATTTCAAAATGCAAATGTA+TGG + chr7_3:6781964-6781983 Msa1091460:three_prime_UTR 25.0%
! TTTTCACAATCCAAAACCAT+TGG + chr7_3:6780835-6780854 Msa1091460:five_prime_UTR 30.0%
! GGGCTTAATAAAATTTTGCA+TGG - chr7_3:6781302-6781321 None:intergenic 30.0%
ACATTACTACTATATAGGTG+TGG + chr7_3:6781339-6781358 Msa1091460:intron 30.0%
AGTTGATTACCTTATAAGGA+AGG + chr7_3:6781436-6781455 Msa1091460:CDS 30.0%
GTTGATTACCTTATAAGGAA+GGG + chr7_3:6781437-6781456 Msa1091460:CDS 30.0%
GTTAACCATCAAAACTCAAA+TGG - chr7_3:6781587-6781606 None:intergenic 30.0%
AAGCGAAAACCAAAAAACAA+AGG - chr7_3:6781941-6781960 None:intergenic 30.0%
!!! TGTTTTTTGGTTTTCGCTTT+CGG + chr7_3:6781942-6781961 Msa1091460:three_prime_UTR 30.0%
! TTTTCACAATCCAAAACCAT+TGG + chr7_3:6780835-6780854 Msa1091460:five_prime_UTR 30.0%
! GGGCTTAATAAAATTTTGCA+TGG - chr7_3:6781302-6781321 None:intergenic 30.0%
ACATTACTACTATATAGGTG+TGG + chr7_3:6781339-6781358 Msa1091460:intron 30.0%
AGTTGATTACCTTATAAGGA+AGG + chr7_3:6781436-6781455 Msa1091460:CDS 30.0%
GTTGATTACCTTATAAGGAA+GGG + chr7_3:6781437-6781456 Msa1091460:CDS 30.0%
GTTAACCATCAAAACTCAAA+TGG - chr7_3:6781587-6781606 None:intergenic 30.0%
AAGCGAAAACCAAAAAACAA+AGG - chr7_3:6781941-6781960 None:intergenic 30.0%
!!! TGTTTTTTGGTTTTCGCTTT+CGG + chr7_3:6781942-6781961 Msa1091460:three_prime_UTR 30.0%
CCTTGTTGATCTTTGTAACT+GGG - chr7_3:6781073-6781092 None:intergenic 35.0%
TCCTTGTTGATCTTTGTAAC+TGG - chr7_3:6781074-6781093 None:intergenic 35.0%
ATTACCTCCATTACAAGCAA+TGG + chr7_3:6781095-6781114 Msa1091460:CDS 35.0%
TCAAACTTCTTCTTCCCAAT+AGG - chr7_3:6781368-6781387 None:intergenic 35.0%
ATTACCTTATAAGGAAGGGA+TGG + chr7_3:6781441-6781460 Msa1091460:CDS 35.0%
TTACCTTATAAGGAAGGGAT+GGG + chr7_3:6781442-6781461 Msa1091460:CDS 35.0%
CTTCAACACTTGAGAAGAAT+CGG - chr7_3:6781723-6781742 None:intergenic 35.0%
CTCAAAATTTAGTAGACTGC+AGG - chr7_3:6781848-6781867 None:intergenic 35.0%
CCTTGTTGATCTTTGTAACT+GGG - chr7_3:6781073-6781092 None:intergenic 35.0%
TCCTTGTTGATCTTTGTAAC+TGG - chr7_3:6781074-6781093 None:intergenic 35.0%
ATTACCTCCATTACAAGCAA+TGG + chr7_3:6781095-6781114 Msa1091460:CDS 35.0%
TCAAACTTCTTCTTCCCAAT+AGG - chr7_3:6781368-6781387 None:intergenic 35.0%
ATTACCTTATAAGGAAGGGA+TGG + chr7_3:6781441-6781460 Msa1091460:CDS 35.0%
TTACCTTATAAGGAAGGGAT+GGG + chr7_3:6781442-6781461 Msa1091460:CDS 35.0%
CTTCAACACTTGAGAAGAAT+CGG - chr7_3:6781723-6781742 None:intergenic 35.0%
CTCAAAATTTAGTAGACTGC+AGG - chr7_3:6781848-6781867 None:intergenic 35.0%
ATGGACTTGAGTCCAACAAA+TGG - chr7_3:6781041-6781060 None:intergenic 40.0%
! ATTTGTTGGACTCAAGTCCA+TGG + chr7_3:6781040-6781059 Msa1091460:CDS 40.0%
CCCAGTTACAAAGATCAACA+AGG + chr7_3:6781070-6781089 Msa1091460:CDS 40.0%
TCTTCCACCATTGCTTGTAA+TGG - chr7_3:6781105-6781124 None:intergenic 40.0%
AACTTCTTCTTCCCAATAGG+AGG - chr7_3:6781365-6781384 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG - chr7_3:6781407-6781426 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG + chr7_3:6781406-6781425 Msa1091460:CDS 40.0%
TTCTTTCGCCAATTGTTCTC+TGG - chr7_3:6781417-6781436 None:intergenic 40.0%
CTACTTGCTTACTTGCAGAA+AGG + chr7_3:6781611-6781630 Msa1091460:intron 40.0%
AAGTCACCAGGATACTATGA+TGG + chr7_3:6781656-6781675 Msa1091460:CDS 40.0%
TAACGTCCATCATAGTATCC+TGG - chr7_3:6781665-6781684 None:intergenic 40.0%
!! GATACTATGATGGACGTTAC+TGG + chr7_3:6781666-6781685 Msa1091460:CDS 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG + chr7_3:6781692-6781711 Msa1091460:CDS 40.0%
!! CGATTCTTCTCAAGTGTTGA+AGG + chr7_3:6781721-6781740 Msa1091460:CDS 40.0%
ATGGACTTGAGTCCAACAAA+TGG - chr7_3:6781041-6781060 None:intergenic 40.0%
! ATTTGTTGGACTCAAGTCCA+TGG + chr7_3:6781040-6781059 Msa1091460:CDS 40.0%
CCCAGTTACAAAGATCAACA+AGG + chr7_3:6781070-6781089 Msa1091460:CDS 40.0%
TCTTCCACCATTGCTTGTAA+TGG - chr7_3:6781105-6781124 None:intergenic 40.0%
AACTTCTTCTTCCCAATAGG+AGG - chr7_3:6781365-6781384 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG - chr7_3:6781407-6781426 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG + chr7_3:6781406-6781425 Msa1091460:CDS 40.0%
TTCTTTCGCCAATTGTTCTC+TGG - chr7_3:6781417-6781436 None:intergenic 40.0%
CTACTTGCTTACTTGCAGAA+AGG + chr7_3:6781611-6781630 Msa1091460:intron 40.0%
AAGTCACCAGGATACTATGA+TGG + chr7_3:6781656-6781675 Msa1091460:CDS 40.0%
TAACGTCCATCATAGTATCC+TGG - chr7_3:6781665-6781684 None:intergenic 40.0%
!! GATACTATGATGGACGTTAC+TGG + chr7_3:6781666-6781685 Msa1091460:CDS 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG + chr7_3:6781692-6781711 Msa1091460:CDS 40.0%
!! CGATTCTTCTCAAGTGTTGA+AGG + chr7_3:6781721-6781740 Msa1091460:CDS 40.0%
AGCTGAAGAGGAGATCATAG+AGG - chr7_3:6780970-6780989 None:intergenic 45.0%
AACTGTAGTCACAGCTGAAG+AGG - chr7_3:6780982-6781001 None:intergenic 45.0%
ACCTCCATTACAAGCAATGG+TGG + chr7_3:6781098-6781117 Msa1091460:CDS 45.0%
TCCACCATTGCTTGTAATGG+AGG - chr7_3:6781102-6781121 None:intergenic 45.0%
TGGAAGAGTAAACTGCATGC+AGG + chr7_3:6781118-6781137 Msa1091460:CDS 45.0%
ATATAGGTGTGGCCTCCTAT+TGG + chr7_3:6781350-6781369 Msa1091460:intron 45.0%
TATAGGTGTGGCCTCCTATT+GGG + chr7_3:6781351-6781370 Msa1091460:intron 45.0%
GCCAATTGTTCTCTGGTCAA+TGG - chr7_3:6781410-6781429 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG - chr7_3:6781448-6781467 None:intergenic 45.0%
! TTGCTTGGAATTTGAGACCG+AGG + chr7_3:6781469-6781488 Msa1091460:CDS 45.0%
! TTTTGTCACGACCCTGATTG+TGG + chr7_3:6781540-6781559 Msa1091460:intron 45.0%
CATAGTATCCTGGTGACTTG+TGG - chr7_3:6781655-6781674 None:intergenic 45.0%
ATGGACGTTACTGGACAATG+TGG + chr7_3:6781675-6781694 Msa1091460:CDS 45.0%
GAATCGGTTGCTCCAAACAA+AGG - chr7_3:6781707-6781726 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG - chr7_3:6781772-6781791 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG - chr7_3:6781773-6781792 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG + chr7_3:6781773-6781792 Msa1091460:CDS 45.0%
GAATCCGATGATACGGACAA+AGG - chr7_3:6781780-6781799 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG - chr7_3:6781787-6781806 None:intergenic 45.0%
TAATCACTCTCTGCTGCCAT+TGG + chr7_3:6781872-6781891 Msa1091460:three_prime_UTR 45.0%
AGCTGAAGAGGAGATCATAG+AGG - chr7_3:6780970-6780989 None:intergenic 45.0%
AACTGTAGTCACAGCTGAAG+AGG - chr7_3:6780982-6781001 None:intergenic 45.0%
ACCTCCATTACAAGCAATGG+TGG + chr7_3:6781098-6781117 Msa1091460:CDS 45.0%
TCCACCATTGCTTGTAATGG+AGG - chr7_3:6781102-6781121 None:intergenic 45.0%
TGGAAGAGTAAACTGCATGC+AGG + chr7_3:6781118-6781137 Msa1091460:CDS 45.0%
ATATAGGTGTGGCCTCCTAT+TGG + chr7_3:6781350-6781369 Msa1091460:intron 45.0%
TATAGGTGTGGCCTCCTATT+GGG + chr7_3:6781351-6781370 Msa1091460:intron 45.0%
GCCAATTGTTCTCTGGTCAA+TGG - chr7_3:6781410-6781429 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG - chr7_3:6781448-6781467 None:intergenic 45.0%
! TTGCTTGGAATTTGAGACCG+AGG + chr7_3:6781469-6781488 Msa1091460:CDS 45.0%
! TTTTGTCACGACCCTGATTG+TGG + chr7_3:6781540-6781559 Msa1091460:intron 45.0%
CATAGTATCCTGGTGACTTG+TGG - chr7_3:6781655-6781674 None:intergenic 45.0%
ATGGACGTTACTGGACAATG+TGG + chr7_3:6781675-6781694 Msa1091460:CDS 45.0%
GAATCGGTTGCTCCAAACAA+AGG - chr7_3:6781707-6781726 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG - chr7_3:6781772-6781791 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG - chr7_3:6781773-6781792 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG + chr7_3:6781773-6781792 Msa1091460:CDS 45.0%
GAATCCGATGATACGGACAA+AGG - chr7_3:6781780-6781799 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG - chr7_3:6781787-6781806 None:intergenic 45.0%
TAATCACTCTCTGCTGCCAT+TGG + chr7_3:6781872-6781891 Msa1091460:three_prime_UTR 45.0%
! GTTCTCTGGTCAATGGTGGA+AGG - chr7_3:6781403-6781422 None:intergenic 50.0%
AAGGTCCGTGACCACAATCA+GGG - chr7_3:6781554-6781573 None:intergenic 50.0%
AAAGGTCCGTGACCACAATC+AGG - chr7_3:6781555-6781574 None:intergenic 50.0%
! CTGGTGACTTGTGGTTCTCA+CGG - chr7_3:6781646-6781665 None:intergenic 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG - chr7_3:6781403-6781422 None:intergenic 50.0%
AAGGTCCGTGACCACAATCA+GGG - chr7_3:6781554-6781573 None:intergenic 50.0%
AAAGGTCCGTGACCACAATC+AGG - chr7_3:6781555-6781574 None:intergenic 50.0%
! CTGGTGACTTGTGGTTCTCA+CGG - chr7_3:6781646-6781665 None:intergenic 50.0%
TACAGTTAACCGCGCCTCGT+CGG + chr7_3:6780995-6781014 Msa1091460:CDS 55.0%
GTTGGACTCAAGTCCATGGC+TGG + chr7_3:6781044-6781063 Msa1091460:CDS 55.0%
TGTAACTGGGAAGCCAGCCA+TGG - chr7_3:6781060-6781079 None:intergenic 55.0%
!! GAAGGGATGGGTTGCTTGCT+TGG + chr7_3:6781454-6781473 Msa1091460:CDS 55.0%
CACGACCCTGATTGTGGTCA+CGG + chr7_3:6781546-6781565 Msa1091460:intron 55.0%
CGTGAGAACCACAAGTCACC+AGG + chr7_3:6781644-6781663 Msa1091460:CDS 55.0%
TACAGTTAACCGCGCCTCGT+CGG + chr7_3:6780995-6781014 Msa1091460:CDS 55.0%
GTTGGACTCAAGTCCATGGC+TGG + chr7_3:6781044-6781063 Msa1091460:CDS 55.0%
TGTAACTGGGAAGCCAGCCA+TGG - chr7_3:6781060-6781079 None:intergenic 55.0%
!! GAAGGGATGGGTTGCTTGCT+TGG + chr7_3:6781454-6781473 Msa1091460:CDS 55.0%
CACGACCCTGATTGTGGTCA+CGG + chr7_3:6781546-6781565 Msa1091460:intron 55.0%
CGTGAGAACCACAAGTCACC+AGG + chr7_3:6781644-6781663 Msa1091460:CDS 55.0%
AACAAATGGAGCCACCGCGC+CGG - chr7_3:6781027-6781046 None:intergenic 60.0%
AACAAATGGAGCCACCGCGC+CGG - chr7_3:6781027-6781046 None:intergenic 60.0%
CGGATTGAACCGACGAGGCG+CGG - chr7_3:6781007-6781026 None:intergenic 65.0%
!! CGCGCCTCGTCGGTTCAATC+CGG + chr7_3:6781005-6781024 Msa1091460:CDS 65.0%
!! CTCGTCGGTTCAATCCGGCG+CGG + chr7_3:6781010-6781029 Msa1091460:CDS 65.0%
GGCGCGGTGGCTCCATTTGT+TGG + chr7_3:6781026-6781045 Msa1091460:CDS 65.0%
CGGATTGAACCGACGAGGCG+CGG - chr7_3:6781007-6781026 None:intergenic 65.0%
!! CGCGCCTCGTCGGTTCAATC+CGG + chr7_3:6781005-6781024 Msa1091460:CDS 65.0%
!! CTCGTCGGTTCAATCCGGCG+CGG + chr7_3:6781010-6781029 Msa1091460:CDS 65.0%
GGCGCGGTGGCTCCATTTGT+TGG + chr7_3:6781026-6781045 Msa1091460:CDS 65.0%
CGCGCCGGATTGAACCGACG+AGG - chr7_3:6781012-6781031 None:intergenic 70.0%
! GTCGGTTCAATCCGGCGCGG+TGG + chr7_3:6781013-6781032 Msa1091460:CDS 70.0%
CGCGCCGGATTGAACCGACG+AGG - chr7_3:6781012-6781031 None:intergenic 70.0%
! GTCGGTTCAATCCGGCGCGG+TGG + chr7_3:6781013-6781032 Msa1091460:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 6780812 6782111 6780812 ID=Msa1091460;Name=Msa1091460
chr7_3 mRNA 6780812 6782111 6780812 ID=Msa1091460-mRNA-1;Parent=Msa1091460;Name=Msa1091460-mRNA-1;_AED=0.28;_eAED=0.28;_QI=148|1|1|1|1|1|3|252|181
chr7_3 exon 6780812 6781139 6780812 ID=Msa1091460-mRNA-1:exon:2152;Parent=Msa1091460-mRNA-1
chr7_3 exon 6781356 6781490 6781356 ID=Msa1091460-mRNA-1:exon:2153;Parent=Msa1091460-mRNA-1
chr7_3 exon 6781629 6782111 6781629 ID=Msa1091460-mRNA-1:exon:2154;Parent=Msa1091460-mRNA-1
chr7_3 five_prime_UTR 6780812 6780959 6780812 ID=Msa1091460-mRNA-1:five_prime_utr;Parent=Msa1091460-mRNA-1
chr7_3 CDS 6780960 6781139 6780960 ID=Msa1091460-mRNA-1:cds;Parent=Msa1091460-mRNA-1
chr7_3 CDS 6781356 6781490 6781356 ID=Msa1091460-mRNA-1:cds;Parent=Msa1091460-mRNA-1
chr7_3 CDS 6781629 6781859 6781629 ID=Msa1091460-mRNA-1:cds;Parent=Msa1091460-mRNA-1
chr7_3 three_prime_UTR 6781860 6782111 6781860 ID=Msa1091460-mRNA-1:three_prime_utr;Parent=Msa1091460-mRNA-1
Gene Sequence

>Msa1091460

ATGGCTGCCTCTATGATCTCCTCTTCAGCTGTGACTACAGTTAACCGCGCCTCGTCGGTTCAATCCGGCGCGGTGGCTCCATTTGTTGGACTCAAGTCCATGGCTGGCTTCCCAGTTACAAAGATCAACAAGGACATTACCTCCATTACAAGCAATGGTGGAAGAGTAAACTGCATGCAGGTGTGGCCTCCTATTGGGAAGAAGAAGTTTGAGACACTTTCATACCTTCCACCATTGACCAGAGAACAATTGGCGAAAGAAGTTGATTACCTTATAAGGAAGGGATGGGTTGCTTGCTTGGAATTTGAGACCGAGAAAGGATTTGTGTACCGTGAGAACCACAAGTCACCAGGATACTATGATGGACGTTACTGGACAATGTGGAAGTTGCCTTTGTTTGGAGCAACCGATTCTTCTCAAGTGTTGAAGGAGCTTGATGAAGCTATTGCTGCTTACCCTGATGCCTTTGTCCGTATCATCGGATTCGACAACGTTCGTCAAGTTCAATGCATCAGTTTCATTGCACACACACCTGCAGTCTACTAA

Protein sequence

>Msa1091460

MAASMISSSAVTTVNRASSVQSGAVAPFVGLKSMAGFPVTKINKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQLAKEVDYLIRKGWVACLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPLFGATDSSQVLKELDEAIAAYPDAFVRIIGFDNVRQVQCISFIAHTPAVY*