Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000170 | MCI18945.1 | 88.966 | 145 | 16 | 0 | 21 | 165 | 1 | 145 | 2.28e-87 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000170 | sp|Q9SZD6|PETS_ARATH | 80.272 | 147 | 29 | 0 | 18 | 164 | 749 | 895 | 6.01e-73 | 238 |
| Msa1000170 | sp|Q9SZD6|PETS_ARATH | 64.596 | 161 | 57 | 0 | 4 | 164 | 497 | 657 | 1.22e-63 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000170 | A0A392Q6R8 | 88.966 | 145 | 16 | 0 | 21 | 165 | 1 | 145 | 1.09e-87 | 263 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1000170 | 0.800188 | 1.620650e-48 | -8.615850e-47 |
| Msa0007990 | Msa1000170 | 0.815102 | 1.097694e-51 | -8.615850e-47 |
| Msa0011500 | Msa1000170 | 0.811375 | 7.225644e-51 | -8.615850e-47 |
| Msa0054310 | Msa1000170 | 0.803439 | 3.484672e-49 | -8.615850e-47 |
| Msa0056450 | Msa1000170 | 0.800307 | 1.532405e-48 | -8.615850e-47 |
| Msa0100090 | Msa1000170 | 0.803572 | 3.270028e-49 | -8.615850e-47 |
| Msa0613710 | Msa1000170 | 0.800064 | 1.717524e-48 | -8.615850e-47 |
| Msa0616070 | Msa1000170 | 0.802680 | 5.002078e-49 | -8.615850e-47 |
| Msa0624770 | Msa1000170 | 0.809416 | 1.913142e-50 | -8.615850e-47 |
| Msa0625720 | Msa1000170 | 0.813829 | 2.099400e-51 | -8.615850e-47 |
| Msa0637900 | Msa1000170 | 0.804492 | 2.104923e-49 | -8.615850e-47 |
| Msa0662570 | Msa1000170 | 0.806076 | 9.805548e-50 | -8.615850e-47 |
| Msa0693380 | Msa1000170 | 0.822829 | 1.921206e-53 | -8.615850e-47 |
| Msa0723990 | Msa1000170 | 0.804020 | 2.639706e-49 | -8.615850e-47 |
| Msa0727710 | Msa1000170 | 0.804543 | 2.054128e-49 | -8.615850e-47 |
| Msa0736600 | Msa1000170 | 0.800311 | 1.529963e-48 | -8.615850e-47 |
| Msa0751260 | Msa1000170 | 0.826638 | 2.431192e-54 | -8.615850e-47 |
| Msa0760180 | Msa1000170 | 0.817141 | 3.846974e-52 | -8.615850e-47 |
| Msa0760250 | Msa1000170 | 0.821057 | 4.943249e-53 | -8.615850e-47 |
| Msa0762970 | Msa1000170 | 0.800840 | 1.193188e-48 | -8.615850e-47 |
| Msa0764720 | Msa1000170 | 0.806480 | 8.061229e-50 | -8.615850e-47 |
| Msa0795070 | Msa1000170 | 0.820375 | 7.091520e-53 | -8.615850e-47 |
| Msa0797770 | Msa1000170 | 0.827419 | 1.581339e-54 | -8.615850e-47 |
| Msa0835230 | Msa1000170 | 0.821987 | 3.013436e-53 | -8.615850e-47 |
| Msa0836850 | Msa1000170 | 0.818645 | 1.759665e-52 | -8.615850e-47 |
| Msa0149300 | Msa1000170 | 0.816015 | 6.876378e-52 | -8.615850e-47 |
| Msa0154440 | Msa1000170 | 0.805486 | 1.304013e-49 | -8.615850e-47 |
| Msa0170140 | Msa1000170 | 0.807750 | 4.338736e-50 | -8.615850e-47 |
| Msa0178510 | Msa1000170 | 0.806318 | 8.717775e-50 | -8.615850e-47 |
| Msa0187030 | Msa1000170 | 0.819396 | 1.187000e-52 | -8.615850e-47 |
| Msa0187830 | Msa1000170 | 0.816666 | 4.916179e-52 | -8.615850e-47 |
| Msa0204840 | Msa1000170 | 0.804789 | 1.824583e-49 | -8.615850e-47 |
| Msa0224780 | Msa1000170 | 0.806764 | 7.019184e-50 | -8.615850e-47 |
| Msa0225220 | Msa1000170 | 0.800477 | 1.414821e-48 | -8.615850e-47 |
| Msa0229590 | Msa1000170 | 0.819723 | 9.998476e-53 | -8.615850e-47 |
| Msa0367870 | Msa1000170 | 0.829536 | 4.871823e-55 | -8.615850e-47 |
| Msa0376350 | Msa1000170 | 0.801380 | 9.253628e-49 | -8.615850e-47 |
| Msa0410650 | Msa1000170 | 0.815172 | 1.059055e-51 | -8.615850e-47 |
| Msa0424790 | Msa1000170 | 0.801097 | 1.057204e-48 | -8.615850e-47 |
| Msa0440440 | Msa1000170 | 0.808494 | 3.013466e-50 | -8.615850e-47 |
| Msa0453000 | Msa1000170 | 0.805919 | 1.057772e-49 | -8.615850e-47 |
| Msa0455760 | Msa1000170 | 0.801964 | 7.022788e-49 | -8.615850e-47 |
| Msa0460590 | Msa1000170 | 0.802024 | 6.825859e-49 | -8.615850e-47 |
| Msa1000160 | Msa1000170 | 0.826664 | 2.395813e-54 | -8.615850e-47 |
| Msa1000170 | Msa1000180 | 0.812045 | 5.164550e-51 | -8.615850e-47 |
| Msa1000170 | Msa1000190 | 0.835267 | 1.853967e-56 | -8.615850e-47 |
| Msa1000170 | Msa1000230 | 0.842032 | 3.311353e-58 | -8.615850e-47 |
| Msa1000170 | Msa1000250 | 0.803736 | 3.022842e-49 | -8.615850e-47 |
| Msa1000170 | Msa1000290 | 0.828144 | 1.058153e-54 | -8.615850e-47 |
| Msa1000170 | Msa1000370 | 0.823609 | 1.263352e-53 | -8.615850e-47 |
| Msa1000170 | Msa1019000 | 0.811110 | 8.248797e-51 | -8.615850e-47 |
| Msa1000170 | Msa1019150 | 0.817673 | 2.919666e-52 | -8.615850e-47 |
| Msa1000170 | Msa1022820 | 0.820549 | 6.469921e-53 | -8.615850e-47 |
| Msa1000170 | Msa1034500 | 0.812738 | 3.645798e-51 | -8.615850e-47 |
| Msa1000170 | Msa1035960 | 0.807542 | 4.804526e-50 | -8.615850e-47 |
| Msa1000170 | Msa1038080 | 0.808615 | 2.838848e-50 | -8.615850e-47 |
| Msa1000170 | Msa1082500 | 0.809769 | 1.606707e-50 | -8.615850e-47 |
| Msa1000170 | Msa1085200 | 0.812516 | 4.076373e-51 | -8.615850e-47 |
| Msa1000170 | Msa1098420 | 0.802524 | 5.384931e-49 | -8.615850e-47 |
| Msa1000170 | Msa1122520 | 0.805353 | 1.390849e-49 | -8.615850e-47 |
| Msa1000170 | Msa1139890 | 0.805919 | 1.058030e-49 | -8.615850e-47 |
| Msa1000170 | Msa1145810 | 0.807694 | 4.460411e-50 | -8.615850e-47 |
| Msa1000170 | Msa1147740 | 0.821276 | 4.399937e-53 | -8.615850e-47 |
| Msa1000170 | Msa1193170 | 0.809344 | 1.982211e-50 | -8.615850e-47 |
| Msa1000170 | Msa1199570 | 0.808513 | 2.985057e-50 | -8.615850e-47 |
| Msa1000170 | Msa1236730 | 0.804295 | 2.313284e-49 | -8.615850e-47 |
| Msa1000170 | Msa1250290 | 0.811198 | 7.891655e-51 | -8.615850e-47 |
| Msa1000170 | Msa1269890 | 0.811689 | 6.173957e-51 | -8.615850e-47 |
| Msa1000170 | Msa1284900 | 0.807825 | 4.183405e-50 | -8.615850e-47 |
| Msa1000170 | Msa1297290 | 0.815582 | 8.585433e-52 | -8.615850e-47 |
| Msa1000170 | Msa1307210 | 0.810054 | 1.394825e-50 | -8.615850e-47 |
| Msa1000170 | Msa1328710 | 0.802298 | 5.995087e-49 | -8.615850e-47 |
| Msa1000170 | Msa1341520 | 0.805188 | 1.505707e-49 | -8.615850e-47 |
| Msa1000170 | Msa1372150 | 0.811326 | 7.405014e-51 | -8.615850e-47 |
| Msa1000170 | Msa1385000 | 0.815316 | 9.838746e-52 | -8.615850e-47 |
| Msa1000170 | Msa1394380 | 0.820981 | 5.146329e-53 | -8.615850e-47 |
| Msa1000170 | Msa1398540 | 0.802744 | 4.850366e-49 | -8.615850e-47 |
| Msa1000170 | Msa1398890 | 0.809540 | 1.799231e-50 | -8.615850e-47 |
| Msa1000170 | Msa1408620 | -0.800315 | 1.526878e-48 | -8.615850e-47 |
| Msa1000170 | Msa1413610 | 0.801901 | 7.235104e-49 | -8.615850e-47 |
| Msa1000170 | Msa1424630 | 0.807693 | 4.463215e-50 | -8.615850e-47 |
| Msa1000170 | Msa1430550 | 0.802852 | 4.607504e-49 | -8.615850e-47 |
| Msa1000170 | Msa1441580 | 0.801157 | 1.027874e-48 | -8.615850e-47 |
| Msa1000170 | Msa1446780 | 0.808942 | 2.416756e-50 | -8.615850e-47 |
| Msa1000170 | Msa1454530 | 0.802906 | 4.492063e-49 | -8.615850e-47 |
| Msa1000170 | Msa1457040 | 0.849614 | 2.888475e-60 | -8.615850e-47 |
| Msa1000170 | Msa1463900 | 0.801838 | 7.453760e-49 | -8.615850e-47 |
| Msa0317730 | Msa1000170 | 0.803323 | 3.681899e-49 | -8.615850e-47 |
| Msa0333650 | Msa1000170 | 0.804032 | 2.624324e-49 | -8.615850e-47 |
| Msa0342010 | Msa1000170 | 0.806091 | 9.733802e-50 | -8.615850e-47 |
| Msa0358890 | Msa1000170 | 0.804743 | 1.865392e-49 | -8.615850e-47 |
| Msa0363790 | Msa1000170 | 0.825143 | 5.504410e-54 | -8.615850e-47 |
| Msa0484780 | Msa1000170 | 0.805131 | 1.547965e-49 | -8.615850e-47 |
| Msa0507680 | Msa1000170 | 0.801320 | 9.518018e-49 | -8.615850e-47 |
| Msa0529890 | Msa1000170 | 0.811904 | 5.542694e-51 | -8.615850e-47 |
| Msa0531180 | Msa1000170 | 0.808934 | 2.425953e-50 | -8.615850e-47 |
| Msa0559500 | Msa1000170 | 0.811915 | 5.514376e-51 | -8.615850e-47 |
| Msa0562570 | Msa1000170 | 0.800216 | 1.599144e-48 | -8.615850e-47 |
| Msa0574390 | Msa1000170 | 0.800989 | 1.112634e-48 | -8.615850e-47 |
| Msa0579660 | Msa1000170 | 0.831087 | 2.035697e-55 | -8.615850e-47 |
| Msa0585560 | Msa1000170 | 0.809114 | 2.220085e-50 | -8.615850e-47 |
| Msa0589280 | Msa1000170 | 0.805417 | 1.348577e-49 | -8.615850e-47 |
| Msa0900620 | Msa1000170 | 0.804434 | 2.164162e-49 | -8.615850e-47 |
| Msa0926470 | Msa1000170 | 0.802074 | 6.664930e-49 | -8.615850e-47 |
| Msa0926890 | Msa1000170 | 0.837085 | 6.399023e-57 | -8.615850e-47 |
| Msa0926900 | Msa1000170 | 0.840487 | 8.442307e-58 | -8.615850e-47 |
| Msa0927090 | Msa1000170 | 0.802225 | 6.205848e-49 | -8.615850e-47 |
| Msa0928130 | Msa1000170 | 0.802404 | 5.701367e-49 | -8.615850e-47 |
| Msa0936390 | Msa1000170 | 0.818175 | 2.247979e-52 | -8.615850e-47 |
| Msa0936530 | Msa1000170 | 0.815216 | 1.035657e-51 | -8.615850e-47 |
| Msa0939250 | Msa1000170 | 0.813461 | 2.529621e-51 | -8.615850e-47 |
| Msa0961360 | Msa1000170 | 0.812150 | 4.900218e-51 | -8.615850e-47 |
| Msa0965610 | Msa1000170 | 0.852091 | 5.793896e-61 | -8.615850e-47 |
| Msa0969520 | Msa1000170 | 0.812739 | 3.642840e-51 | -8.615850e-47 |
| Msa0973600 | Msa1000170 | 0.816997 | 4.143723e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000170 | MtrunA17_Chr6g0486531 | 85.366 | 164 | 24 | 0 | 1 | 164 | 825 | 988 | 4.84e-89 | 280 |
| Msa1000170 | MtrunA17_Chr6g0486531 | 69.718 | 142 | 43 | 0 | 22 | 163 | 605 | 746 | 3.46e-63 | 209 |
| Msa1000170 | MtrunA17_Chr6g0486321 | 60.000 | 155 | 31 | 2 | 12 | 165 | 25 | 149 | 1.65e-50 | 160 |
| Msa1000170 | MtrunA17_Chr6g0486241 | 80.189 | 106 | 7 | 1 | 19 | 124 | 37 | 128 | 8.50e-49 | 156 |
| Msa1000170 | MtrunA17_Chr6g0486491 | 73.148 | 108 | 15 | 1 | 43 | 150 | 1 | 94 | 5.02e-47 | 148 |
| Msa1000170 | MtrunA17_Chr6g0460441 | 50.000 | 138 | 48 | 1 | 26 | 163 | 13 | 129 | 2.14e-38 | 128 |
| Msa1000170 | MtrunA17_Chr6g0486211 | 86.111 | 72 | 10 | 0 | 16 | 87 | 9 | 80 | 1.52e-36 | 121 |
| Msa1000170 | MtrunA17_Chr6g0484381 | 62.963 | 108 | 11 | 1 | 57 | 164 | 36 | 114 | 3.07e-36 | 123 |
| Msa1000170 | MtrunA17_Chr2g0299581 | 52.703 | 148 | 42 | 4 | 19 | 164 | 4 | 125 | 1.30e-35 | 122 |
| Msa1000170 | MtrunA17_Chr2g0299591 | 92.000 | 50 | 4 | 0 | 18 | 67 | 13 | 62 | 1.26e-26 | 95.9 |
| Msa1000170 | MtrunA17_Chr6g0477831 | 56.962 | 79 | 34 | 0 | 69 | 147 | 11 | 89 | 1.55e-25 | 94.0 |
| Msa1000170 | MtrunA17_Chr6g0486281 | 90.909 | 44 | 4 | 0 | 121 | 164 | 1 | 44 | 1.84e-21 | 82.0 |
| Msa1000170 | MtrunA17_Chr6g0486301 | 51.282 | 78 | 28 | 1 | 86 | 163 | 1033 | 1100 | 4.69e-19 | 83.2 |
| Msa1000170 | MtrunA17_Chr6g0448841 | 47.872 | 94 | 48 | 1 | 29 | 122 | 30 | 122 | 1.33e-18 | 81.3 |
| Msa1000170 | MtrunA17_Chr6g0486461 | 78.049 | 41 | 9 | 0 | 125 | 165 | 10 | 50 | 5.00e-15 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000170 | AT4G29060.1 | 80.272 | 147 | 29 | 0 | 18 | 164 | 749 | 895 | 6.11e-74 | 238 |
| Msa1000170 | AT4G29060.1 | 64.596 | 161 | 57 | 0 | 4 | 164 | 497 | 657 | 1.24e-64 | 213 |
| Msa1000170 | AT4G29060.2 | 64.596 | 161 | 51 | 1 | 4 | 164 | 497 | 651 | 6.83e-63 | 205 |
| Msa1000170 | AT4G11120.1 | 50.538 | 93 | 43 | 2 | 29 | 121 | 76 | 165 | 2.63e-18 | 81.3 |
Find 39 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTCTTCTCTTTGCATTTC+AGG | 0.133913 | 6_4:+82883761 | None:intergenic |
| CCTCATTGGTTAAACAATTA+AGG | 0.145910 | 6_4:-82884120 | Msa1000170:CDS |
| TTCCTTCGTCACAATAGTTT+CGG | 0.269335 | 6_4:+82883790 | None:intergenic |
| GCAAGCATACCTCAGGAAAA+AGG | 0.286057 | 6_4:-82884026 | Msa1000170:CDS |
| TCCTTCAGCTGCTAGTCTTC+CGG | 0.310289 | 6_4:+82883979 | None:intergenic |
| TCCTTCGTCACAATAGTTTC+GGG | 0.358591 | 6_4:+82883791 | None:intergenic |
| CTCATTGGTTAAACAATTAA+GGG | 0.369404 | 6_4:-82884119 | Msa1000170:CDS |
| AGTACTGGTTTCGGCCTCAT+TGG | 0.405483 | 6_4:-82884134 | Msa1000170:CDS |
| GCAAGTTGCTGCTTGTCCTC+AGG | 0.414009 | 6_4:-82883840 | Msa1000170:CDS |
| GAAATCAACAGTACTGGTTT+CGG | 0.431645 | 6_4:-82884143 | Msa1000170:CDS |
| AGAAACGGGTGCAGGGATGA+TGG | 0.446137 | 6_4:-82884095 | Msa1000170:CDS |
| TAAACAATTAAGGGAAGAAA+CGG | 0.450664 | 6_4:-82884110 | Msa1000170:CDS |
| TTAAGGGAAGAAACGGGTGC+AGG | 0.502165 | 6_4:-82884103 | Msa1000170:CDS |
| ACATGAGAGAAAATTGTTGA+GGG | 0.502839 | 6_4:-82883721 | None:intergenic |
| TGTCAGGAAATCAACAGTAC+TGG | 0.503338 | 6_4:-82884149 | Msa1000170:intron |
| CTCACTTCTGCCAACAAAGT+CGG | 0.506846 | 6_4:+82883895 | None:intergenic |
| CCTTAATTGTTTAACCAATG+AGG | 0.525034 | 6_4:+82884120 | None:intergenic |
| TGGCAGAAGTGAGAAATTCA+AGG | 0.527151 | 6_4:-82883885 | Msa1000170:CDS |
| TGTTCTCGGGTTTCAATGCA+AGG | 0.527406 | 6_4:+82883741 | None:intergenic |
| AAGTGAGAAATTCAAGGAGT+TGG | 0.528224 | 6_4:-82883879 | Msa1000170:CDS |
| TCATCCGCTGATAAGAAATC+CGG | 0.529747 | 6_4:-82883998 | Msa1000170:CDS |
| TACAGAAGGCGATCTTGAAA+AGG | 0.536969 | 6_4:-82884050 | Msa1000170:CDS |
| AACTGTGAAACCGACTTTGT+TGG | 0.542867 | 6_4:-82883905 | Msa1000170:CDS |
| AACATGAGAGAAAATTGTTG+AGG | 0.544870 | 6_4:-82883722 | None:intergenic |
| AAAAGGCGCAAGCATACCTC+AGG | 0.548541 | 6_4:-82884033 | Msa1000170:CDS |
| ATATCTTCAATAGATACAAA+CGG | 0.551658 | 6_4:+82883815 | None:intergenic |
| CTGAATGTAACCACATATGT+AGG | 0.554718 | 6_4:-82884250 | Msa1000170:intron |
| TACATTCACGATGCACGGAT+CGG | 0.559121 | 6_4:-82883944 | Msa1000170:CDS |
| AAACAATTAAGGGAAGAAAC+GGG | 0.568597 | 6_4:-82884109 | Msa1000170:CDS |
| ACAACTAACACCTACATATG+TGG | 0.570358 | 6_4:+82884240 | None:intergenic |
| GAAGACTAGCAGCTGAAGGA+AGG | 0.571916 | 6_4:-82883976 | Msa1000170:CDS |
| AAAGCTCTTGCTGATACAGA+AGG | 0.601688 | 6_4:-82884064 | Msa1000170:CDS |
| TCCCGAAACTATTGTGACGA+AGG | 0.603689 | 6_4:-82883792 | Msa1000170:CDS |
| TCCGGAAGACTAGCAGCTGA+AGG | 0.605549 | 6_4:-82883980 | Msa1000170:CDS |
| TAAGGGAAGAAACGGGTGCA+GGG | 0.607891 | 6_4:-82884102 | Msa1000170:CDS |
| GTACATACATTCACGATGCA+CGG | 0.616607 | 6_4:-82883949 | Msa1000170:CDS |
| TCTTCCGGATTTCTTATCAG+CGG | 0.628603 | 6_4:+82883994 | None:intergenic |
| TAACACTAACATGTCGACAC+CGG | 0.665146 | 6_4:-82884297 | None:intergenic |
| ATAGATACAAACGGAACCTG+AGG | 0.668908 | 6_4:+82883824 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCTTCAATAGATACAAA+CGG | + | chr6_4:82884199-82884218 | None:intergenic | 20.0% |
| !!! | AATTGTTTTAATGTTCTGTC+AGG | - | chr6_4:82883846-82883865 | Msa1000170:CDS | 25.0% |
| !! | CTCATTGGTTAAACAATTAA+GGG | - | chr6_4:82883892-82883911 | Msa1000170:CDS | 25.0% |
| ! | TAAACAATTAAGGGAAGAAA+CGG | - | chr6_4:82883901-82883920 | Msa1000170:CDS | 25.0% |
| !!! | GCATTTTCTGAAATTATCAC+CGG | + | chr6_4:82883736-82883755 | None:intergenic | 30.0% |
| GTTGTGCACAAAAAGAAAAT+TGG | - | chr6_4:82883789-82883808 | Msa1000170:CDS | 30.0% | |
| CCTTAATTGTTTAACCAATG+AGG | + | chr6_4:82883894-82883913 | None:intergenic | 30.0% | |
| ! | CCTCATTGGTTAAACAATTA+AGG | - | chr6_4:82883891-82883910 | Msa1000170:CDS | 30.0% |
| AAACAATTAAGGGAAGAAAC+GGG | - | chr6_4:82883902-82883921 | Msa1000170:CDS | 30.0% | |
| ! | ACAATTTTCTCTCATGTTCT+CGG | + | chr6_4:82884287-82884306 | None:intergenic | 30.0% |
| CTGAATGTAACCACATATGT+AGG | - | chr6_4:82883761-82883780 | Msa1000170:CDS | 35.0% | |
| ACAACTAACACCTACATATG+TGG | + | chr6_4:82883774-82883793 | None:intergenic | 35.0% | |
| !! | GAAATCAACAGTACTGGTTT+CGG | - | chr6_4:82883868-82883887 | Msa1000170:CDS | 35.0% |
| AAGTGAGAAATTCAAGGAGT+TGG | - | chr6_4:82884132-82884151 | Msa1000170:CDS | 35.0% | |
| TTCCTTCGTCACAATAGTTT+CGG | + | chr6_4:82884224-82884243 | None:intergenic | 35.0% | |
| ! | CAATTTTCTCTCATGTTCTC+GGG | + | chr6_4:82884286-82884305 | None:intergenic | 35.0% |
| TGTCAGGAAATCAACAGTAC+TGG | - | chr6_4:82883862-82883881 | Msa1000170:CDS | 40.0% | |
| AAAGCTCTTGCTGATACAGA+AGG | - | chr6_4:82883947-82883966 | Msa1000170:CDS | 40.0% | |
| TACAGAAGGCGATCTTGAAA+AGG | - | chr6_4:82883961-82883980 | Msa1000170:CDS | 40.0% | |
| CAAGCATACCTCAGGAAAAA+GGG | - | chr6_4:82883986-82884005 | Msa1000170:CDS | 40.0% | |
| TCATCCGCTGATAAGAAATC+CGG | - | chr6_4:82884013-82884032 | Msa1000170:CDS | 40.0% | |
| TCTTCCGGATTTCTTATCAG+CGG | + | chr6_4:82884020-82884039 | None:intergenic | 40.0% | |
| GTACATACATTCACGATGCA+CGG | - | chr6_4:82884062-82884081 | Msa1000170:CDS | 40.0% | |
| ! | AACTGTGAAACCGACTTTGT+TGG | - | chr6_4:82884106-82884125 | Msa1000170:CDS | 40.0% |
| TGGCAGAAGTGAGAAATTCA+AGG | - | chr6_4:82884126-82884145 | Msa1000170:CDS | 40.0% | |
| ATAGATACAAACGGAACCTG+AGG | + | chr6_4:82884190-82884209 | None:intergenic | 40.0% | |
| TCCTTCGTCACAATAGTTTC+GGG | + | chr6_4:82884223-82884242 | None:intergenic | 40.0% | |
| AGGTCTTCTCTTTGCATTTC+AGG | + | chr6_4:82884253-82884272 | None:intergenic | 40.0% | |
| GCAAGCATACCTCAGGAAAA+AGG | - | chr6_4:82883985-82884004 | Msa1000170:CDS | 45.0% | |
| ! | ATGAGAGACCCTTTTTCCTG+AGG | + | chr6_4:82883997-82884016 | None:intergenic | 45.0% |
| TACATTCACGATGCACGGAT+CGG | - | chr6_4:82884067-82884086 | Msa1000170:CDS | 45.0% | |
| CTCACTTCTGCCAACAAAGT+CGG | + | chr6_4:82884119-82884138 | None:intergenic | 45.0% | |
| TCCCGAAACTATTGTGACGA+AGG | - | chr6_4:82884219-82884238 | Msa1000170:intron | 45.0% | |
| TGTTCTCGGGTTTCAATGCA+AGG | + | chr6_4:82884273-82884292 | None:intergenic | 45.0% | |
| !! | AGTACTGGTTTCGGCCTCAT+TGG | - | chr6_4:82883877-82883896 | Msa1000170:CDS | 50.0% |
| TTAAGGGAAGAAACGGGTGC+AGG | - | chr6_4:82883908-82883927 | Msa1000170:CDS | 50.0% | |
| TAAGGGAAGAAACGGGTGCA+GGG | - | chr6_4:82883909-82883928 | Msa1000170:CDS | 50.0% | |
| ! | AAAAGGCGCAAGCATACCTC+AGG | - | chr6_4:82883978-82883997 | Msa1000170:CDS | 50.0% |
| !! | TCCTTCAGCTGCTAGTCTTC+CGG | + | chr6_4:82884035-82884054 | None:intergenic | 50.0% |
| GAAGACTAGCAGCTGAAGGA+AGG | - | chr6_4:82884035-82884054 | Msa1000170:CDS | 50.0% | |
| AGAAACGGGTGCAGGGATGA+TGG | - | chr6_4:82883916-82883935 | Msa1000170:CDS | 55.0% | |
| TCCGGAAGACTAGCAGCTGA+AGG | - | chr6_4:82884031-82884050 | Msa1000170:CDS | 55.0% | |
| ! | GCAAGTTGCTGCTTGTCCTC+AGG | - | chr6_4:82884171-82884190 | Msa1000170:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 82883724 | 82884309 | 82883724 | ID=Msa1000170;Name=Msa1000170 |
| chr6_4 | mRNA | 82883724 | 82884309 | 82883724 | ID=Msa1000170-mRNA-1;Parent=Msa1000170;Name=Msa1000170-mRNA-1;_AED=0.48;_eAED=0.54;_QI=0|0|0|1|1|1|2|0|166 |
| chr6_4 | exon | 82884251 | 82884309 | 82884251 | ID=Msa1000170-mRNA-1:exon:15975;Parent=Msa1000170-mRNA-1 |
| chr6_4 | exon | 82883724 | 82884165 | 82883724 | ID=Msa1000170-mRNA-1:exon:15974;Parent=Msa1000170-mRNA-1 |
| chr6_4 | CDS | 82884251 | 82884309 | 82884251 | ID=Msa1000170-mRNA-1:cds;Parent=Msa1000170-mRNA-1 |
| chr6_4 | CDS | 82883724 | 82884165 | 82883724 | ID=Msa1000170-mRNA-1:cds;Parent=Msa1000170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
