Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936140 | G7JJU3 | 85.950 | 363 | 11 | 3 | 1 | 330 | 1 | 356 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017300 | Msa0936140 | 0.841014 | 6.143551e-58 | -8.615850e-47 |
| Msa0037180 | Msa0936140 | -0.800736 | 1.252886e-48 | -8.615850e-47 |
| Msa0037650 | Msa0936140 | 0.801721 | 7.877175e-49 | -8.615850e-47 |
| Msa0040860 | Msa0936140 | 0.825996 | 3.456207e-54 | -8.615850e-47 |
| Msa0631380 | Msa0936140 | -0.802281 | 6.044809e-49 | -8.615850e-47 |
| Msa0676570 | Msa0936140 | 0.801391 | 9.204936e-49 | -8.615850e-47 |
| Msa0742370 | Msa0936140 | 0.804921 | 1.712278e-49 | -8.615850e-47 |
| Msa0802950 | Msa0936140 | 0.810386 | 1.182693e-50 | -8.615850e-47 |
| Msa0807100 | Msa0936140 | 0.800970 | 1.122672e-48 | -8.615850e-47 |
| Msa0807870 | Msa0936140 | 0.820480 | 6.710181e-53 | -8.615850e-47 |
| Msa0138990 | Msa0936140 | 0.812927 | 3.314458e-51 | -8.615850e-47 |
| Msa0177320 | Msa0936140 | -0.802887 | 4.531523e-49 | -8.615850e-47 |
| Msa0225070 | Msa0936140 | 0.807415 | 5.111252e-50 | -8.615850e-47 |
| Msa0226450 | Msa0936140 | 0.811015 | 8.649154e-51 | -8.615850e-47 |
| Msa0364910 | Msa0936140 | 0.804524 | 2.073012e-49 | -8.615850e-47 |
| Msa0386880 | Msa0936140 | -0.802588 | 5.225342e-49 | -8.615850e-47 |
| Msa0403740 | Msa0936140 | 0.802194 | 6.297195e-49 | -8.615850e-47 |
| Msa0262440 | Msa0936140 | -0.832868 | 7.394028e-56 | -8.615850e-47 |
| Msa0266140 | Msa0936140 | 0.811804 | 5.827642e-51 | -8.615850e-47 |
| Msa0290800 | Msa0936140 | -0.824853 | 6.445865e-54 | -8.615850e-47 |
| Msa0304060 | Msa0936140 | 0.802617 | 5.153951e-49 | -8.615850e-47 |
| Msa0326170 | Msa0936140 | 0.833006 | 6.831945e-56 | -8.615850e-47 |
| Msa0326710 | Msa0936140 | -0.813335 | 2.695951e-51 | -8.615850e-47 |
| Msa0328870 | Msa0936140 | -0.827317 | 1.672397e-54 | -8.615850e-47 |
| Msa0331070 | Msa0936140 | 0.804387 | 2.213210e-49 | -8.615850e-47 |
| Msa0364030 | Msa0936140 | 0.802013 | 6.862140e-49 | -8.615850e-47 |
| Msa0582270 | Msa0936140 | 0.806867 | 6.677496e-50 | -8.615850e-47 |
| Msa0868050 | Msa0936140 | 0.813945 | 1.979029e-51 | -8.615850e-47 |
| Msa0870460 | Msa0936140 | 0.826289 | 2.943105e-54 | -8.615850e-47 |
| Msa0936140 | Msa1014550 | 0.811100 | 8.287194e-51 | -8.615850e-47 |
| Msa0936140 | Msa1052000 | -0.807566 | 4.747444e-50 | -8.615850e-47 |
| Msa0936140 | Msa1055520 | 0.809991 | 1.439039e-50 | -8.615850e-47 |
| Msa0936140 | Msa1078830 | -0.810877 | 9.261946e-51 | -8.615850e-47 |
| Msa0936140 | Msa1078890 | -0.807984 | 3.868937e-50 | -8.615850e-47 |
| Msa0936140 | Msa1169660 | -0.811433 | 7.018984e-51 | -8.615850e-47 |
| Msa0936140 | Msa1181370 | 0.818540 | 1.858550e-52 | -8.615850e-47 |
| Msa0936140 | Msa1341390 | 0.829548 | 4.841304e-55 | -8.615850e-47 |
| Msa0936140 | Msa1380180 | 0.816171 | 6.345386e-52 | -8.615850e-47 |
| Msa0936140 | Msa1384410 | 0.808545 | 2.938550e-50 | -8.615850e-47 |
| Msa0936140 | Msa1398450 | 0.809250 | 2.076068e-50 | -8.615850e-47 |
| Msa0936140 | Msa1408860 | 0.805239 | 1.469244e-49 | -8.615850e-47 |
| Msa0936140 | Msa1457770 | -0.831873 | 1.304372e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936140 | MtrunA17_Chr6g0451961 | 85.950 | 363 | 11 | 3 | 1 | 330 | 1 | 356 | 0.0 | 582 |
| Msa0936140 | MtrunA17_Chr1g0207651 | 32.676 | 355 | 173 | 10 | 27 | 329 | 24 | 364 | 2.29e-42 | 150 |
| Msa0936140 | MtrunA17_Chr3g0143831 | 22.812 | 320 | 184 | 10 | 31 | 328 | 41 | 319 | 5.40e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936140 | AT5G14970.1 | 48.138 | 376 | 128 | 11 | 1 | 330 | 1 | 355 | 7.92e-95 | 286 |
| Msa0936140 | AT2G14910.1 | 32.908 | 392 | 183 | 10 | 1 | 329 | 1 | 375 | 5.61e-45 | 158 |
| Msa0936140 | AT2G14910.2 | 30.894 | 369 | 175 | 10 | 1 | 306 | 1 | 352 | 1.04e-33 | 127 |
| Msa0936140 | AT1G63610.1 | 23.188 | 276 | 154 | 6 | 74 | 328 | 88 | 326 | 1.73e-13 | 70.9 |
Find 109 sgRNAs with CRISPR-Local
Find 356 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAGCTAGCTCTAACTTTA+TGG | 0.171310 | 6_3:+6804443 | Msa0936140:CDS |
| TTCACCTCCAAACTCTTTAA+AGG | 0.208375 | 6_3:-6802493 | None:intergenic |
| GAGAAGGTTGTTTCTGATTT+GGG | 0.261359 | 6_3:+6802544 | Msa0936140:CDS |
| TGAGAAGGTTGTTTCTGATT+TGG | 0.269725 | 6_3:+6802543 | Msa0936140:CDS |
| TGAAACGCCTTTAAAGAGTT+TGG | 0.302289 | 6_3:+6802486 | Msa0936140:CDS |
| AGGAAGAAGAGAGAGGGGAG+AGG | 0.316167 | 6_3:-6800056 | None:intergenic |
| ATTGGCAGGTGTATGTTATT+AGG | 0.317981 | 6_3:+6804946 | Msa0936140:intron |
| CTTGTTTCTTCTATCATCAC+TGG | 0.342003 | 6_3:+6800371 | Msa0936140:CDS |
| GGGAGAGGGTGGTGGAGAGA+TGG | 0.342989 | 6_3:-6800041 | None:intergenic |
| TGATTTGGGGTTAGCGAATT+CGG | 0.348201 | 6_3:+6802558 | Msa0936140:CDS |
| AGTAATGGCGCAGGAGTCTT+TGG | 0.369133 | 6_3:+6802595 | Msa0936140:CDS |
| AGAGAGAGGGGAGAGGGTGG+TGG | 0.369712 | 6_3:-6800049 | None:intergenic |
| GGAGAGGGTGGTGGAGAGAT+GGG | 0.382331 | 6_3:-6800040 | None:intergenic |
| GATGTCCTTGACGAGGAATC+TGG | 0.386448 | 6_3:+6802432 | Msa0936140:CDS |
| CTTTGGAGATTTGCCGCCTC+AGG | 0.387256 | 6_3:+6802612 | Msa0936140:CDS |
| GGTGGAGAGATGGGTGAGAT+GGG | 0.394624 | 6_3:-6800031 | None:intergenic |
| TTGCATTTGAGCTGTGTTGT+TGG | 0.397687 | 6_3:+6804997 | Msa0936140:CDS |
| GGAAGAAGAGAGAGGGGAGA+GGG | 0.409734 | 6_3:-6800055 | None:intergenic |
| TTATTAGGTCATCACTTAAG+AGG | 0.413839 | 6_3:+6804961 | Msa0936140:CDS |
| ATCGTTGTTGTGTTATAAAG+AGG | 0.415993 | 6_3:-6799908 | None:intergenic |
| CACTGTGAAGCCACGGTTGA+AGG | 0.422214 | 6_3:-6800174 | None:intergenic |
| AGATGGGTGAGATGGGTTGT+TGG | 0.427729 | 6_3:-6800024 | None:intergenic |
| CAAACTATTTCTACTATGCT+TGG | 0.427819 | 6_3:+6800284 | Msa0936140:CDS |
| GCACCAGTTCAATGTAAAAC+AGG | 0.428978 | 6_3:+6805148 | Msa0936140:three_prime_UTR |
| AGAAGAGAGAGGGGAGAGGG+TGG | 0.429852 | 6_3:-6800052 | None:intergenic |
| AACTCATCACCATCATCGTC+CGG | 0.437210 | 6_3:-6804498 | None:intergenic |
| TTTATGGAACAATCAGTAGA+AGG | 0.441983 | 6_3:+6804459 | Msa0936140:CDS |
| GAAATATCACATGCGGATCA+AGG | 0.445138 | 6_3:+6802454 | Msa0936140:CDS |
| TCTTCTTCTTCTTCCTTCCA+TGG | 0.449894 | 6_3:+6799956 | Msa0936140:exon |
| TGGTGGAGAGATGGGTGAGA+TGG | 0.453731 | 6_3:-6800032 | None:intergenic |
| TACCGTACAAGGCTTACAAC+TGG | 0.455111 | 6_3:-6805120 | None:intergenic |
| GTCTCCGTCAACGTGGTGGC+AGG | 0.465322 | 6_3:-6800126 | None:intergenic |
| TGAAACACCTTTAGAGATAA+CGG | 0.471773 | 6_3:-6800237 | None:intergenic |
| AGGTCATCACTTAAGAGGAT+TGG | 0.496502 | 6_3:+6804966 | Msa0936140:CDS |
| TTTAAAGAGTTTGGAGGTGA+AGG | 0.499329 | 6_3:+6802495 | Msa0936140:CDS |
| ACATCCTGCCACCACGTTGA+CGG | 0.502069 | 6_3:+6800122 | Msa0936140:CDS |
| GTCAACGTGGTGGCAGGATG+TGG | 0.506655 | 6_3:-6800120 | None:intergenic |
| GCAGGATGTGGTGAAGAGAA+AGG | 0.507084 | 6_3:-6800108 | None:intergenic |
| CTTACAACTGGTGTTATACA+AGG | 0.507375 | 6_3:-6805108 | None:intergenic |
| TCGGCCGTCATCAGAGGAAG+TGG | 0.517662 | 6_3:+6804368 | Msa0936140:CDS |
| GATAACTCCGTTATCTCTAA+AGG | 0.520590 | 6_3:+6800230 | Msa0936140:CDS |
| TTGAGATTCAACCTCTTCAT+CGG | 0.522451 | 6_3:+6800345 | Msa0936140:CDS |
| GACTATCACCCGGACGATGA+TGG | 0.523088 | 6_3:+6804489 | Msa0936140:CDS |
| ATGTGATATGCTTTAATGCT+TGG | 0.523281 | 6_3:-6805240 | None:intergenic |
| CGGCGGAGGAAGAAGAGAGA+GGG | 0.526127 | 6_3:-6800062 | None:intergenic |
| CGCTATGGAATGCAGAGTAC+AGG | 0.526987 | 6_3:+6802410 | Msa0936140:CDS |
| GGTGATGCGTGAGAGGATGA+AGG | 0.535643 | 6_3:-6800003 | None:intergenic |
| ATAAGCTAAGGTAAAGGCTA+AGG | 0.540160 | 6_3:+6799877 | Msa0936140:five_prime_UTR |
| GAGAAGAAGTTCTAAAAGCA+AGG | 0.541887 | 6_3:-6805196 | None:intergenic |
| AAATATCACATGCGGATCAA+GGG | 0.543711 | 6_3:+6802455 | Msa0936140:CDS |
| GAAACTTACAGCAGCAGTAA+TGG | 0.544279 | 6_3:+6802580 | Msa0936140:CDS |
| GAAAGGGTCGACGGTGGCGA+TGG | 0.544691 | 6_3:-6800091 | None:intergenic |
| CAATGTAAAACAGGAAGTGT+GGG | 0.545243 | 6_3:+6805157 | Msa0936140:three_prime_UTR |
| TACAACTGGTGTTATACAAG+GGG | 0.547285 | 6_3:-6805106 | None:intergenic |
| GGTTGTTGGTGATGCGTGAG+AGG | 0.550045 | 6_3:-6800010 | None:intergenic |
| GGCGATGGTGATGACGGCGG+AGG | 0.550503 | 6_3:-6800076 | None:intergenic |
| TCAATGTAAAACAGGAAGTG+TGG | 0.551448 | 6_3:+6805156 | Msa0936140:three_prime_UTR |
| AGAAGGTTGTTTCTGATTTG+GGG | 0.556586 | 6_3:+6802545 | Msa0936140:CDS |
| GGGGTGTTGAAGAGAAAATG+AGG | 0.556615 | 6_3:-6805066 | None:intergenic |
| AACGCCTTTAAAGAGTTTGG+AGG | 0.557457 | 6_3:+6802489 | Msa0936140:CDS |
| TTGTTTCTTCTATCATCACT+GGG | 0.557906 | 6_3:+6800372 | Msa0936140:CDS |
| TTTATAGAGAATAATAATGG+TGG | 0.558374 | 6_3:+6805023 | Msa0936140:exon |
| TCCTCCACTTCCTCTGATGA+CGG | 0.560560 | 6_3:-6804372 | None:intergenic |
| ACCAGAAAAGCAACTTTGCT+AGG | 0.561251 | 6_3:-6804551 | None:intergenic |
| AAGAGTTTGGAGGTGAAGGG+TGG | 0.561930 | 6_3:+6802499 | Msa0936140:CDS |
| GAAACAAGTAACCGATGAAG+AGG | 0.564989 | 6_3:-6800356 | None:intergenic |
| CAGGATGTGGTGAAGAGAAA+GGG | 0.572257 | 6_3:-6800107 | None:intergenic |
| TTAAAGAGTTTGGAGGTGAA+GGG | 0.573325 | 6_3:+6802496 | Msa0936140:CDS |
| GACGGTGGCGATGGTGATGA+CGG | 0.579091 | 6_3:-6800082 | None:intergenic |
| GTAACATCAAAATGATCAGA+AGG | 0.580361 | 6_3:-6800314 | None:intergenic |
| AAGGGTGGTGAAGAAGAACA+TGG | 0.582706 | 6_3:+6802514 | Msa0936140:CDS |
| ATTGTTGATGCTGCCATGGA+AGG | 0.584804 | 6_3:-6799969 | None:intergenic |
| CACCAGTTGTAAGCCTTGTA+CGG | 0.586127 | 6_3:+6805118 | Msa0936140:three_prime_UTR |
| TACAGCAGCAGTAATGGCGC+AGG | 0.586366 | 6_3:+6802586 | Msa0936140:CDS |
| GATAGGTGACTGAAATGTCT+CGG | 0.586884 | 6_3:+6804349 | Msa0936140:intron |
| TGAAATTGTTGATGCTGCCA+TGG | 0.587458 | 6_3:-6799973 | None:intergenic |
| ACTCATCACCATCATCGTCC+GGG | 0.591917 | 6_3:-6804497 | None:intergenic |
| AGGGTGGTGAAGAAGAACAT+GGG | 0.599277 | 6_3:+6802515 | Msa0936140:CDS |
| GGCGGAGGAAGAAGAGAGAG+GGG | 0.602193 | 6_3:-6800061 | None:intergenic |
| GTCTGAGTTGACAAACATGA+AGG | 0.606464 | 6_3:+6802660 | Msa0936140:CDS |
| TAGAGCTAGCTTCGTCGACA+AGG | 0.606575 | 6_3:-6804434 | None:intergenic |
| TGCTAGGTAATCGCGAGAAG+TGG | 0.609297 | 6_3:-6804535 | None:intergenic |
| AATGTCTCGGCCGTCATCAG+AGG | 0.610274 | 6_3:+6804362 | Msa0936140:CDS |
| TAGATATCACTGTGAAGCCA+CGG | 0.611648 | 6_3:-6800181 | None:intergenic |
| GTGATGCGTGAGAGGATGAA+GGG | 0.624710 | 6_3:-6800002 | None:intergenic |
| AATATCACATGCGGATCAAG+GGG | 0.625812 | 6_3:+6802456 | Msa0936140:CDS |
| GAGATAACGGAGTTATCGAG+AGG | 0.629687 | 6_3:-6800224 | None:intergenic |
| ACGGCGGAGGAAGAAGAGAG+AGG | 0.631341 | 6_3:-6800063 | None:intergenic |
| ATGAGGAAGAAGAATATACA+AGG | 0.633614 | 6_3:-6805049 | None:intergenic |
| CGTAAATCAACCTTCAACCG+TGG | 0.638048 | 6_3:+6800164 | Msa0936140:CDS |
| TATTTCCAGATTCCTCGTCA+AGG | 0.638754 | 6_3:-6802437 | None:intergenic |
| ATCACATGCGGATCAAGGGG+CGG | 0.640143 | 6_3:+6802459 | Msa0936140:CDS |
| AGAACATGGGGAAACTGAGA+AGG | 0.640390 | 6_3:+6802528 | Msa0936140:CDS |
| TGGTGAAGAGAAAGGGTCGA+CGG | 0.641567 | 6_3:-6800100 | None:intergenic |
| GGGTGGTGAAGAAGAACATG+GGG | 0.643013 | 6_3:+6802516 | Msa0936140:CDS |
| GCCGTCATCAGAGGAAGTGG+AGG | 0.649197 | 6_3:+6804371 | Msa0936140:CDS |
| TTACAACTGGTGTTATACAA+GGG | 0.668575 | 6_3:-6805107 | None:intergenic |
| TGAATGTATTTCAGAGCCTG+AGG | 0.668987 | 6_3:-6802628 | None:intergenic |
| GAATCTGGAAATATCACATG+CGG | 0.673688 | 6_3:+6802447 | Msa0936140:CDS |
| ATGTATTTCAGAGCCTGAGG+CGG | 0.676018 | 6_3:-6802625 | None:intergenic |
| TGAGTTGACAAACATGAAGG+AGG | 0.679770 | 6_3:+6802663 | Msa0936140:CDS |
| CAACGTCGTCTCCGTCAACG+TGG | 0.687491 | 6_3:-6800133 | None:intergenic |
| CGTCGTCTCCGTCAACGTGG+TGG | 0.693744 | 6_3:-6800130 | None:intergenic |
| GGTGGCGATGGTGATGACGG+CGG | 0.704025 | 6_3:-6800079 | None:intergenic |
| CAACTGGTGTTATACAAGGG+GGG | 0.713234 | 6_3:-6805104 | None:intergenic |
| ACAACTGGTGTTATACAAGG+GGG | 0.713530 | 6_3:-6805105 | None:intergenic |
| AGGAAACGTAGACTATCACC+CGG | 0.715138 | 6_3:+6804479 | Msa0936140:CDS |
| TGAAGAGAAAGGGTCGACGG+TGG | 0.716888 | 6_3:-6800097 | None:intergenic |
| AGTACAGGATGTCCTTGACG+AGG | 0.724418 | 6_3:+6802425 | Msa0936140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATTATAGATAATTG+AGG | - | chr6_3:6800413-6800432 | None:intergenic | 10.0% |
| !!! | TCATTTTGTTAAATTATTAT+CGG | + | chr6_3:6800816-6800835 | Msa0936140:intron | 10.0% |
| !!! | TCATTTTGTCAAATTATTAT+CGG | + | chr6_3:6800607-6800626 | Msa0936140:intron | 15.0% |
| !!! | GTTGACAATATAAATTATTT+TGG | - | chr6_3:6801270-6801289 | None:intergenic | 15.0% |
| !! | TTATGAATTTAGCATTATAT+TGG | + | chr6_3:6801349-6801368 | Msa0936140:intron | 15.0% |
| !!! | GAAATTGATAAATTTTGAAT+TGG | + | chr6_3:6802363-6802382 | Msa0936140:intron | 15.0% |
| !! | ATAAACTTAAAATTCAATCA+AGG | - | chr6_3:6802796-6802815 | None:intergenic | 15.0% |
| !!! | TGAATTTTAAGTTTATGTAT+CGG | + | chr6_3:6802800-6802819 | Msa0936140:intron | 15.0% |
| !!! | TTAGAATTTTGTTAATTTCA+AGG | + | chr6_3:6804824-6804843 | Msa0936140:intron | 15.0% |
| !!! | ACTTTTATAGAGAATAATAA+TGG | + | chr6_3:6805020-6805039 | Msa0936140:exon | 15.0% |
| !! | TATTTGATAAATCTCAAAGT+TGG | + | chr6_3:6801860-6801879 | Msa0936140:intron | 20.0% |
| !!! | GAATGAATTTTACAAAATCA+GGG | + | chr6_3:6801922-6801941 | Msa0936140:intron | 20.0% |
| !!! | AATGAATTTTACAAAATCAG+GGG | + | chr6_3:6801923-6801942 | Msa0936140:intron | 20.0% |
| !! | GTGACAACTTAATATAAATA+GGG | - | chr6_3:6802156-6802175 | None:intergenic | 20.0% |
| !!! | TGCAATTTTTTATTATTCCA+AGG | + | chr6_3:6802765-6802784 | Msa0936140:intron | 20.0% |
| !!! | AATTTTTTATTATTCCAAGG+AGG | + | chr6_3:6802768-6802787 | Msa0936140:intron | 20.0% |
| !!! | GAATTTTAAGTTTATGTATC+GGG | + | chr6_3:6802801-6802820 | Msa0936140:intron | 20.0% |
| !!! | AATAATAACCTTCAAGTTAT+CGG | - | chr6_3:6803181-6803200 | None:intergenic | 20.0% |
| !! | GTTATTATTGTGAGAAAAAA+AGG | + | chr6_3:6803192-6803211 | Msa0936140:intron | 20.0% |
| !!! | GAATAATTTGTTTGAAAGAA+TGG | - | chr6_3:6803300-6803319 | None:intergenic | 20.0% |
| !!! | TTATTCTTTGTTGTTTGTAT+TGG | + | chr6_3:6803314-6803333 | Msa0936140:intron | 20.0% |
| !!! | TATTCTTTGTTGTTTGTATT+GGG | + | chr6_3:6803315-6803334 | Msa0936140:intron | 20.0% |
| !!! | TAGCTTATTTCTATTTGTTA+AGG | + | chr6_3:6804284-6804303 | Msa0936140:intron | 20.0% |
| !!! | ATTTTGTTAATTTCATCTAC+TGG | - | chr6_3:6804694-6804713 | None:intergenic | 20.0% |
| !! | TTTATAGAGAATAATAATGG+TGG | + | chr6_3:6805023-6805042 | Msa0936140:exon | 20.0% |
| !!! | GCTTATGTTTTTGTTTTGTT+GGG | - | chr6_3:6799863-6799882 | None:intergenic | 25.0% |
| !!! | AGCTTATGTTTTTGTTTTGT+TGG | - | chr6_3:6799864-6799883 | None:intergenic | 25.0% |
| ! | CAAAACAAAAACATAAGCTA+AGG | + | chr6_3:6799865-6799884 | Msa0936140:five_prime_UTR | 25.0% |
| ! | AAAAACATAAGCTAAGGTAA+AGG | + | chr6_3:6799871-6799890 | Msa0936140:five_prime_UTR | 25.0% |
| !! | TTGTTAAAGTATTATCAGTG+TGG | + | chr6_3:6801022-6801041 | Msa0936140:intron | 25.0% |
| ! | AATTTGAGAGTGACAATAAT+TGG | + | chr6_3:6801194-6801213 | Msa0936140:intron | 25.0% |
| ! | ATACTTGAAAAGATTACGTT+TGG | + | chr6_3:6801612-6801631 | Msa0936140:intron | 25.0% |
| ! | AATTTAGCACTCAAAACATT+AGG | + | chr6_3:6801675-6801694 | Msa0936140:intron | 25.0% |
| ! | ATTTAGCACTCAAAACATTA+GGG | + | chr6_3:6801676-6801695 | Msa0936140:intron | 25.0% |
| ! | AAGATATTATCGCCAAATTA+AGG | + | chr6_3:6801736-6801755 | Msa0936140:intron | 25.0% |
| !! | CAAAATATGAAGTTGGTTAT+CGG | + | chr6_3:6801775-6801794 | Msa0936140:intron | 25.0% |
| ! | TTTGTAAAATTCATTCCAAC+CGG | - | chr6_3:6801918-6801937 | None:intergenic | 25.0% |
| !! | GGAATGAATTTTACAAAATC+AGG | + | chr6_3:6801921-6801940 | Msa0936140:intron | 25.0% |
| ! | CAACTTAATATAAATAGGGA+CGG | - | chr6_3:6802152-6802171 | None:intergenic | 25.0% |
| ! | GGTGACAACTTAATATAAAT+AGG | - | chr6_3:6802157-6802176 | None:intergenic | 25.0% |
| !!! | GCAATATTTTGAAGTTTTAG+AGG | + | chr6_3:6802258-6802277 | Msa0936140:intron | 25.0% |
| !!! | AGTTTTAGAGGATTAATGTA+AGG | + | chr6_3:6802270-6802289 | Msa0936140:intron | 25.0% |
| !!! | GTTTTAGAGGATTAATGTAA+GGG | + | chr6_3:6802271-6802290 | Msa0936140:intron | 25.0% |
| !!! | GCTCTATTTTTGTTACTAAT+TGG | + | chr6_3:6802302-6802321 | Msa0936140:intron | 25.0% |
| !!! | TTTTGTTACTAATTGGTTTC+TGG | + | chr6_3:6802309-6802328 | Msa0936140:intron | 25.0% |
| ! | ATAAAAAGTTTCACAACCAT+AGG | - | chr6_3:6802836-6802855 | None:intergenic | 25.0% |
| !! | ATGGTTGTGAAACTTTTTAT+CGG | + | chr6_3:6802836-6802855 | Msa0936140:intron | 25.0% |
| ! | TAAACTCAAATTACTATCAG+TGG | - | chr6_3:6802869-6802888 | None:intergenic | 25.0% |
| !! | TGACTTTTTACTTTATGACA+TGG | - | chr6_3:6802948-6802967 | None:intergenic | 25.0% |
| ! | TTGTAAATTTGTGAAAAGTG+AGG | + | chr6_3:6803372-6803391 | Msa0936140:intron | 25.0% |
| ! | ATTGACATATAACTAGTAAG+AGG | - | chr6_3:6803482-6803501 | None:intergenic | 25.0% |
| ! | ATTCATAGAATGGTGAAAAT+AGG | - | chr6_3:6803794-6803813 | None:intergenic | 25.0% |
| ! | AATGAATGCATCAAAAGAAA+TGG | + | chr6_3:6803826-6803845 | Msa0936140:intron | 25.0% |
| ! | TTACTCATAGACTGTTTAAA+AGG | + | chr6_3:6803854-6803873 | Msa0936140:intron | 25.0% |
| !!! | GACAATGTTTATTTTCTTTC+AGG | + | chr6_3:6803904-6803923 | Msa0936140:intron | 25.0% |
| !!! | TCAAAATGTTTTGAACAAGT+TGG | - | chr6_3:6804407-6804426 | None:intergenic | 25.0% |
| !! | TAGACGAATTTTCAATTTCA+TGG | - | chr6_3:6804728-6804747 | None:intergenic | 25.0% |
| ! | AAATTGAAAATTCGTCTATC+CGG | + | chr6_3:6804730-6804749 | Msa0936140:intron | 25.0% |
| ! | AATTTGGTCCATGAAATTAT+AGG | - | chr6_3:6804864-6804883 | None:intergenic | 25.0% |
| ATCGTTGTTGTGTTATAAAG+AGG | - | chr6_3:6799911-6799930 | None:intergenic | 30.0% | |
| ! | TGAAACACCTTTAGAGATAA+CGG | - | chr6_3:6800240-6800259 | None:intergenic | 30.0% |
| !! | CAAACTATTTCTACTATGCT+TGG | + | chr6_3:6800284-6800303 | Msa0936140:CDS | 30.0% |
| GTAACATCAAAATGATCAGA+AGG | - | chr6_3:6800317-6800336 | None:intergenic | 30.0% | |
| ! | TTGTTTCTTCTATCATCACT+GGG | + | chr6_3:6800372-6800391 | Msa0936140:CDS | 30.0% |
| TTAGAATTTAGTGTCAGTGT+TGG | - | chr6_3:6800569-6800588 | None:intergenic | 30.0% | |
| CTATCAATTATGTGTGTGTT+TGG | + | chr6_3:6800689-6800708 | Msa0936140:intron | 30.0% | |
| GGATTGTGTAAAATTGAGTA+TGG | + | chr6_3:6801102-6801121 | Msa0936140:intron | 30.0% | |
| TTATATTGGTGTGATTCAAG+TGG | + | chr6_3:6801363-6801382 | Msa0936140:intron | 30.0% | |
| !! | GGATGTTTTTAATTGTGCTT+TGG | + | chr6_3:6801430-6801449 | Msa0936140:intron | 30.0% |
| !!! | TGTAGTGATTAGTTTTGTAG+TGG | + | chr6_3:6801458-6801477 | Msa0936140:intron | 30.0% |
| !!! | TGTTGTTTTTAATTGTGCTC+TGG | + | chr6_3:6801589-6801608 | Msa0936140:intron | 30.0% |
| AGGTATCCAAAATATGAAGT+TGG | + | chr6_3:6801768-6801787 | Msa0936140:intron | 30.0% | |
| ! | CGATAACCAACTTCATATTT+TGG | - | chr6_3:6801777-6801796 | None:intergenic | 30.0% |
| ATAATATCCTAAACACGCTT+AGG | + | chr6_3:6803520-6803539 | Msa0936140:intron | 30.0% | |
| TAATATCCTAAACACGCTTA+GGG | + | chr6_3:6803521-6803540 | Msa0936140:intron | 30.0% | |
| ! | TAAACATGTGCACAAGTTTT+TGG | + | chr6_3:6803625-6803644 | Msa0936140:intron | 30.0% |
| GCTTATGACAACAAACTATA+TGG | - | chr6_3:6803717-6803736 | None:intergenic | 30.0% | |
| ! | CTTTTGATGCATTCATAGAA+TGG | - | chr6_3:6803804-6803823 | None:intergenic | 30.0% |
| ! | AACCAAGTATTGTCAAATAG+TGG | + | chr6_3:6804065-6804084 | Msa0936140:intron | 30.0% |
| TTGTACTAAAAAACGTATCG+TGG | - | chr6_3:6804138-6804157 | None:intergenic | 30.0% | |
| ! | AATCAAGTTGCAATTGAAAG+TGG | + | chr6_3:6804249-6804268 | Msa0936140:intron | 30.0% |
| TTTATGGAACAATCAGTAGA+AGG | + | chr6_3:6804459-6804478 | Msa0936140:CDS | 30.0% | |
| !! | CCAAGCAAAATTTGTTGTAA+GGG | - | chr6_3:6804598-6804617 | None:intergenic | 30.0% |
| !! | ACCAAGCAAAATTTGTTGTA+AGG | - | chr6_3:6804599-6804618 | None:intergenic | 30.0% |
| TGAATCATAAACTTAGTCTC+AGG | + | chr6_3:6804657-6804676 | Msa0936140:intron | 30.0% | |
| TTACGATGCCTATAATTTCA+TGG | + | chr6_3:6804853-6804872 | Msa0936140:intron | 30.0% | |
| TTATTAGGTCATCACTTAAG+AGG | + | chr6_3:6804961-6804980 | Msa0936140:CDS | 30.0% | |
| ATGAGGAAGAAGAATATACA+AGG | - | chr6_3:6805052-6805071 | None:intergenic | 30.0% | |
| !! | TTACAACTGGTGTTATACAA+GGG | - | chr6_3:6805110-6805129 | None:intergenic | 30.0% |
| ATGTGATATGCTTTAATGCT+TGG | - | chr6_3:6805243-6805262 | None:intergenic | 30.0% | |
| ATAAGCTAAGGTAAAGGCTA+AGG | + | chr6_3:6799877-6799896 | Msa0936140:five_prime_UTR | 35.0% | |
| GATAACTCCGTTATCTCTAA+AGG | + | chr6_3:6800230-6800249 | Msa0936140:CDS | 35.0% | |
| TTGAGATTCAACCTCTTCAT+CGG | + | chr6_3:6800345-6800364 | Msa0936140:CDS | 35.0% | |
| ! | CTTGTTTCTTCTATCATCAC+TGG | + | chr6_3:6800371-6800390 | Msa0936140:CDS | 35.0% |
| TCAGAACAATCATGTGTGTT+TGG | + | chr6_3:6800473-6800492 | Msa0936140:intron | 35.0% | |
| TTAGTGTCAATGTTGAACAC+CGG | - | chr6_3:6800778-6800797 | None:intergenic | 35.0% | |
| AATTGACAGTAATGTGCTGA+CGG | - | chr6_3:6800887-6800906 | None:intergenic | 35.0% | |
| CTGTCAATTATGTGTGTGTT+TGG | + | chr6_3:6800898-6800917 | Msa0936140:intron | 35.0% | |
| !! | TTTGGTTCTTAAGTACCGAA+AGG | + | chr6_3:6800916-6800935 | Msa0936140:intron | 35.0% |
| !! | TTCTATCAGAAGTGTCCTTT+CGG | - | chr6_3:6800934-6800953 | None:intergenic | 35.0% |
| TTAGAGATTCGTAGATTGAG+TGG | + | chr6_3:6801077-6801096 | Msa0936140:intron | 35.0% | |
| GAGTGACAATAATTGGATGA+TGG | + | chr6_3:6801201-6801220 | Msa0936140:intron | 35.0% | |
| TACTTAGCCAACAAAACTTC+AGG | + | chr6_3:6801225-6801244 | Msa0936140:intron | 35.0% | |
| ! | TTTTGGTCAACACATCACTA+CGG | - | chr6_3:6801253-6801272 | None:intergenic | 35.0% |
| GTTCGAACTCTAATCACATA+GGG | - | chr6_3:6801400-6801419 | None:intergenic | 35.0% | |
| TGTTCGAACTCTAATCACAT+AGG | - | chr6_3:6801401-6801420 | None:intergenic | 35.0% | |
| TGTGATTAGAGTTCGAACAT+TGG | + | chr6_3:6801402-6801421 | Msa0936140:intron | 35.0% | |
| GTGATTAGAGTTCGAACATT+GGG | + | chr6_3:6801403-6801422 | Msa0936140:intron | 35.0% | |
| !!! | ATTAGTTTTGTAGTGGAGTG+TGG | + | chr6_3:6801465-6801484 | Msa0936140:intron | 35.0% |
| AGAACCAAATTGTGTAGTTC+AGG | + | chr6_3:6801520-6801539 | Msa0936140:intron | 35.0% | |
| AACTAGAGTCGTATGTGATT+AGG | + | chr6_3:6801547-6801566 | Msa0936140:intron | 35.0% | |
| ! | TTACGTTTGGCATTTGAGTT+TGG | + | chr6_3:6801625-6801644 | Msa0936140:intron | 35.0% |
| !! | CCTTAAAGAGCACCTTAATT+TGG | - | chr6_3:6801751-6801770 | None:intergenic | 35.0% |
| ! | CCAAATTAAGGTGCTCTTTA+AGG | + | chr6_3:6801748-6801767 | Msa0936140:intron | 35.0% |
| AATGGTTGATTAAGGAAGCT+AGG | + | chr6_3:6801804-6801823 | Msa0936140:intron | 35.0% | |
| !! | AGTAAGTTCTGAAATTGGAG+AGG | + | chr6_3:6801947-6801966 | Msa0936140:intron | 35.0% |
| !! | GTAAGTTCTGAAATTGGAGA+GGG | + | chr6_3:6801948-6801967 | Msa0936140:intron | 35.0% |
| !! | TTTGCGCTTTTGAAAGATTG+AGG | + | chr6_3:6802222-6802241 | Msa0936140:intron | 35.0% |
| TTAGAGGATTAATGTAAGGG+TGG | + | chr6_3:6802274-6802293 | Msa0936140:intron | 35.0% | |
| !!! | GTTTCTGGTTTTTTGTGCAA+AGG | + | chr6_3:6802324-6802343 | Msa0936140:intron | 35.0% |
| ! | TTGTGCAAAGGTGATGTTTT+TGG | + | chr6_3:6802336-6802355 | Msa0936140:intron | 35.0% |
| ! | TGTGCAAAGGTGATGTTTTT+GGG | + | chr6_3:6802337-6802356 | Msa0936140:intron | 35.0% |
| GAATCTGGAAATATCACATG+CGG | + | chr6_3:6802447-6802466 | Msa0936140:CDS | 35.0% | |
| AAATATCACATGCGGATCAA+GGG | + | chr6_3:6802455-6802474 | Msa0936140:CDS | 35.0% | |
| ! | TGAAACGCCTTTAAAGAGTT+TGG | + | chr6_3:6802486-6802505 | Msa0936140:CDS | 35.0% |
| TTCACCTCCAAACTCTTTAA+AGG | - | chr6_3:6802496-6802515 | None:intergenic | 35.0% | |
| TTTAAAGAGTTTGGAGGTGA+AGG | + | chr6_3:6802495-6802514 | Msa0936140:CDS | 35.0% | |
| TTAAAGAGTTTGGAGGTGAA+GGG | + | chr6_3:6802496-6802515 | Msa0936140:CDS | 35.0% | |
| !! | TGAGAAGGTTGTTTCTGATT+TGG | + | chr6_3:6802543-6802562 | Msa0936140:CDS | 35.0% |
| !! | GAGAAGGTTGTTTCTGATTT+GGG | + | chr6_3:6802544-6802563 | Msa0936140:CDS | 35.0% |
| !! | AGAAGGTTGTTTCTGATTTG+GGG | + | chr6_3:6802545-6802564 | Msa0936140:CDS | 35.0% |
| CTACAGAACTATGTTTCGAT+CGG | + | chr6_3:6802899-6802918 | Msa0936140:intron | 35.0% | |
| AGAATTATTGACAATCGCTG+TGG | - | chr6_3:6803025-6803044 | None:intergenic | 35.0% | |
| ATGAACAACCGATAACTTGA+AGG | + | chr6_3:6803170-6803189 | Msa0936140:intron | 35.0% | |
| AGTACACCTATAAAAGCCTA+AGG | + | chr6_3:6803561-6803580 | Msa0936140:intron | 35.0% | |
| ! | TTTCGTCTCATTCTCTTTTC+CGG | + | chr6_3:6803757-6803776 | Msa0936140:intron | 35.0% |
| AAAATAGGATCAATTCTGGC+CGG | - | chr6_3:6803779-6803798 | None:intergenic | 35.0% | |
| GGTGAAAATAGGATCAATTC+TGG | - | chr6_3:6803783-6803802 | None:intergenic | 35.0% | |
| ! | CTGATATTTTTCTCGATACG+CGG | + | chr6_3:6804212-6804231 | Msa0936140:intron | 35.0% |
| TTCAACTTTGTTAATCGCAC+TGG | + | chr6_3:6804319-6804338 | Msa0936140:intron | 35.0% | |
| ! | CCCTTACAACAAATTTTGCT+TGG | + | chr6_3:6804595-6804614 | Msa0936140:intron | 35.0% |
| ACTAAATGAACGGCTCAAAA+AGG | + | chr6_3:6804763-6804782 | Msa0936140:intron | 35.0% | |
| ACATGCTAAAGAAAAGAGCT+CGG | - | chr6_3:6804896-6804915 | None:intergenic | 35.0% | |
| TAATAACATACACCTGCCAA+TGG | - | chr6_3:6804947-6804966 | None:intergenic | 35.0% | |
| ATTGGCAGGTGTATGTTATT+AGG | + | chr6_3:6804946-6804965 | Msa0936140:intron | 35.0% | |
| TATACAAGGGGGGTAAAAAT+GGG | - | chr6_3:6805097-6805116 | None:intergenic | 35.0% | |
| TTATACAAGGGGGGTAAAAA+TGG | - | chr6_3:6805098-6805117 | None:intergenic | 35.0% | |
| !! | TACAACTGGTGTTATACAAG+GGG | - | chr6_3:6805109-6805128 | None:intergenic | 35.0% |
| !! | CTTACAACTGGTGTTATACA+AGG | - | chr6_3:6805111-6805130 | None:intergenic | 35.0% |
| ! | CTTCCTGTTTTACATTGAAC+TGG | - | chr6_3:6805154-6805173 | None:intergenic | 35.0% |
| TCAATGTAAAACAGGAAGTG+TGG | + | chr6_3:6805156-6805175 | Msa0936140:three_prime_UTR | 35.0% | |
| ! | CAATGTAAAACAGGAAGTGT+GGG | + | chr6_3:6805157-6805176 | Msa0936140:three_prime_UTR | 35.0% |
| !! | GAGAAGAAGTTCTAAAAGCA+AGG | - | chr6_3:6805199-6805218 | None:intergenic | 35.0% |
| TCTTCTTCTTCTTCCTTCCA+TGG | + | chr6_3:6799956-6799975 | Msa0936140:exon | 40.0% | |
| TGAAATTGTTGATGCTGCCA+TGG | - | chr6_3:6799976-6799995 | None:intergenic | 40.0% | |
| TAGATATCACTGTGAAGCCA+CGG | - | chr6_3:6800184-6800203 | None:intergenic | 40.0% | |
| GAAACAAGTAACCGATGAAG+AGG | - | chr6_3:6800359-6800378 | None:intergenic | 40.0% | |
| CACATTTCTATCAGAAGGGT+CGG | - | chr6_3:6800538-6800557 | None:intergenic | 40.0% | |
| CGGACACATTTCTATCAGAA+GGG | - | chr6_3:6800542-6800561 | None:intergenic | 40.0% | |
| CCTTCTGATAGAAATGTGTC+CGG | + | chr6_3:6800540-6800559 | Msa0936140:intron | 40.0% | |
| GAAAGGACACTTCTGATAGA+AGG | + | chr6_3:6800933-6800952 | Msa0936140:intron | 40.0% | |
| CGAATCTCTAACACAAACAC+CGG | - | chr6_3:6801068-6801087 | None:intergenic | 40.0% | |
| AGATTCGTAGATTGAGTGGA+TGG | + | chr6_3:6801081-6801100 | Msa0936140:intron | 40.0% | |
| !! | TACGGTACCTGAAGTTTTGT+TGG | - | chr6_3:6801235-6801254 | None:intergenic | 40.0% |
| ACCAAATTGTGTAGTTCAGG+TGG | + | chr6_3:6801523-6801542 | Msa0936140:intron | 40.0% | |
| ACCACCTGAACTACACAATT+TGG | - | chr6_3:6801527-6801546 | None:intergenic | 40.0% | |
| TAGAGTCGTATGTGATTAGG+AGG | + | chr6_3:6801550-6801569 | Msa0936140:intron | 40.0% | |
| TGATTAGGAGGTCGAACATT+TGG | + | chr6_3:6801562-6801581 | Msa0936140:intron | 40.0% | |
| GGTGCACAAATGGTTGATTA+AGG | + | chr6_3:6801796-6801815 | Msa0936140:intron | 40.0% | |
| !! | GGGGAAGTAAGTTCTGAAAT+TGG | + | chr6_3:6801942-6801961 | Msa0936140:intron | 40.0% |
| !!! | TGCACCAGTACAGCATTTTT+TGG | + | chr6_3:6802107-6802126 | Msa0936140:intron | 40.0% |
| !!! | ACCAGTACAGCATTTTTTGG+TGG | + | chr6_3:6802110-6802129 | Msa0936140:intron | 40.0% |
| ACCACCAAAAAATGCTGTAC+TGG | - | chr6_3:6802114-6802133 | None:intergenic | 40.0% | |
| !!! | TGGTTGTTGCTGTTTTCGTT+AGG | + | chr6_3:6802383-6802402 | Msa0936140:intron | 40.0% |
| ! | TTTTCGTTAGGTACACGCTA+TGG | + | chr6_3:6802395-6802414 | Msa0936140:intron | 40.0% |
| TATTTCCAGATTCCTCGTCA+AGG | - | chr6_3:6802440-6802459 | None:intergenic | 40.0% | |
| GAAATATCACATGCGGATCA+AGG | + | chr6_3:6802454-6802473 | Msa0936140:CDS | 40.0% | |
| AATATCACATGCGGATCAAG+GGG | + | chr6_3:6802456-6802475 | Msa0936140:CDS | 40.0% | |
| ! | AACGCCTTTAAAGAGTTTGG+AGG | + | chr6_3:6802489-6802508 | Msa0936140:CDS | 40.0% |
| ! | TGATTTGGGGTTAGCGAATT+CGG | + | chr6_3:6802558-6802577 | Msa0936140:CDS | 40.0% |
| GAAACTTACAGCAGCAGTAA+TGG | + | chr6_3:6802580-6802599 | Msa0936140:CDS | 40.0% | |
| TGAATGTATTTCAGAGCCTG+AGG | - | chr6_3:6802631-6802650 | None:intergenic | 40.0% | |
| ! | GTCTGAGTTGACAAACATGA+AGG | + | chr6_3:6802660-6802679 | Msa0936140:CDS | 40.0% |
| ! | TGAGTTGACAAACATGAAGG+AGG | + | chr6_3:6802663-6802682 | Msa0936140:CDS | 40.0% |
| ! | AGTTCGCGTTTTTGTTGCTA+TGG | + | chr6_3:6802712-6802731 | Msa0936140:intron | 40.0% |
| CGCTTTATGGCGTCTTAAAA+CGG | - | chr6_3:6802972-6802991 | None:intergenic | 40.0% | |
| TCAATATCGGCCATAACAGA+TGG | - | chr6_3:6803055-6803074 | None:intergenic | 40.0% | |
| CAAACCAGCGTAGTCAATAT+CGG | - | chr6_3:6803068-6803087 | None:intergenic | 40.0% | |
| !! | GATATTGACTACGCTGGTTT+GGG | + | chr6_3:6803067-6803086 | Msa0936140:intron | 40.0% |
| TTGAAGGAGTTAGGTGGAAA+AGG | + | chr6_3:6803090-6803109 | Msa0936140:intron | 40.0% | |
| AGCATAGAGATGGAAAGAGA+TGG | - | chr6_3:6803237-6803256 | None:intergenic | 40.0% | |
| TTAGGGTAGTTGTTCATGTG+TGG | + | chr6_3:6803538-6803557 | Msa0936140:intron | 40.0% | |
| ACACCTATAAAAGCCTAAGG+AGG | + | chr6_3:6803564-6803583 | Msa0936140:intron | 40.0% | |
| CACCTATAAAAGCCTAAGGA+GGG | + | chr6_3:6803565-6803584 | Msa0936140:intron | 40.0% | |
| ACCTATAAAAGCCTAAGGAG+GGG | + | chr6_3:6803566-6803585 | Msa0936140:intron | 40.0% | |
| ! | TTGCATCATTTGCTGCTTCT+GGG | - | chr6_3:6803939-6803958 | None:intergenic | 40.0% |
| ! | ATTGCATCATTTGCTGCTTC+TGG | - | chr6_3:6803940-6803959 | None:intergenic | 40.0% |
| TGATGCAATTAGAACACGAC+AGG | + | chr6_3:6803951-6803970 | Msa0936140:intron | 40.0% | |
| GATGCAATTAGAACACGACA+GGG | + | chr6_3:6803952-6803971 | Msa0936140:intron | 40.0% | |
| ATGCAATTAGAACACGACAG+GGG | + | chr6_3:6803953-6803972 | Msa0936140:intron | 40.0% | |
| ! | TTGTGAGGCATTACCATATC+AGG | - | chr6_3:6804019-6804038 | None:intergenic | 40.0% |
| ! | AACAGAAGTTGTGACTTGTG+AGG | - | chr6_3:6804034-6804053 | None:intergenic | 40.0% |
| CGCCACTATTTGACAATACT+TGG | - | chr6_3:6804070-6804089 | None:intergenic | 40.0% | |
| GATAGGTGACTGAAATGTCT+CGG | + | chr6_3:6804349-6804368 | Msa0936140:intron | 40.0% | |
| !! | CGAAGCTAGCTCTAACTTTA+TGG | + | chr6_3:6804443-6804462 | Msa0936140:CDS | 40.0% |
| !!! | ACCTAGCAAAGTTGCTTTTC+TGG | + | chr6_3:6804550-6804569 | Msa0936140:CDS | 40.0% |
| ACCAGAAAAGCAACTTTGCT+AGG | - | chr6_3:6804554-6804573 | None:intergenic | 40.0% | |
| AGCTCGGTAAATCGTCAATT+TGG | - | chr6_3:6804880-6804899 | None:intergenic | 40.0% | |
| TGTGCTTAATCGTGTTCCAT+TGG | + | chr6_3:6804928-6804947 | Msa0936140:intron | 40.0% | |
| AGGTCATCACTTAAGAGGAT+TGG | + | chr6_3:6804966-6804985 | Msa0936140:CDS | 40.0% | |
| TTGCATTTGAGCTGTGTTGT+TGG | + | chr6_3:6804997-6805016 | Msa0936140:CDS | 40.0% | |
| ATACAAGGGGGGTAAAAATG+GGG | - | chr6_3:6805096-6805115 | None:intergenic | 40.0% | |
| !! | ACAACTGGTGTTATACAAGG+GGG | - | chr6_3:6805108-6805127 | None:intergenic | 40.0% |
| !!! | TGGTGCTTTTTTACCGTACA+AGG | - | chr6_3:6805134-6805153 | None:intergenic | 40.0% |
| GCACCAGTTCAATGTAAAAC+AGG | + | chr6_3:6805148-6805167 | Msa0936140:three_prime_UTR | 40.0% | |
| ATTGTTGATGCTGCCATGGA+AGG | - | chr6_3:6799972-6799991 | None:intergenic | 45.0% | |
| CAGGATGTGGTGAAGAGAAA+GGG | - | chr6_3:6800110-6800129 | None:intergenic | 45.0% | |
| CGTAAATCAACCTTCAACCG+TGG | + | chr6_3:6800164-6800183 | Msa0936140:CDS | 45.0% | |
| !! | GAGATAACGGAGTTATCGAG+AGG | - | chr6_3:6800227-6800246 | None:intergenic | 45.0% |
| CCGGACACATTTCTATCAGA+AGG | - | chr6_3:6800543-6800562 | None:intergenic | 45.0% | |
| ! | TTAGTGTCAGTGTTGGACAC+CGG | - | chr6_3:6800562-6800581 | None:intergenic | 45.0% |
| CGTGTTAGTAGTGTTGTGTC+CGG | + | chr6_3:6801046-6801065 | Msa0936140:intron | 45.0% | |
| !! | AGTTTTGTAGTGGAGTGTGG+AGG | + | chr6_3:6801468-6801487 | Msa0936140:intron | 45.0% |
| GTTGGTTATCGGTGCACAAA+TGG | + | chr6_3:6801786-6801805 | Msa0936140:intron | 45.0% | |
| TGTGGGATGGAAAGAGATAG+AGG | + | chr6_3:6801999-6802018 | Msa0936140:intron | 45.0% | |
| GTGGGATGGAAAGAGATAGA+GGG | + | chr6_3:6802000-6802019 | Msa0936140:intron | 45.0% | |
| TGGGATGGAAAGAGATAGAG+GGG | + | chr6_3:6802001-6802020 | Msa0936140:intron | 45.0% | |
| GGGTTGTGCAAAACATCCTA+CGG | + | chr6_3:6802021-6802040 | Msa0936140:intron | 45.0% | |
| ! | ATAGTGCAACAGTGCTGGAA+TGG | + | chr6_3:6802049-6802068 | Msa0936140:intron | 45.0% |
| GAGGTCAATCAACCTGTTGA+CGG | + | chr6_3:6802081-6802100 | Msa0936140:intron | 45.0% | |
| AAGGGTGGTGAAGAAGAACA+TGG | + | chr6_3:6802514-6802533 | Msa0936140:CDS | 45.0% | |
| AGGGTGGTGAAGAAGAACAT+GGG | + | chr6_3:6802515-6802534 | Msa0936140:CDS | 45.0% | |
| AGAACATGGGGAAACTGAGA+AGG | + | chr6_3:6802528-6802547 | Msa0936140:CDS | 45.0% | |
| ATGTATTTCAGAGCCTGAGG+CGG | - | chr6_3:6802628-6802647 | None:intergenic | 45.0% | |
| ! | ATTCAATCAAGGCACCTCCT+TGG | - | chr6_3:6802785-6802804 | None:intergenic | 45.0% |
| TATCGGGTGAATTGCTCCTA+TGG | + | chr6_3:6802817-6802836 | Msa0936140:intron | 45.0% | |
| !! | TCGATCGGTGTTTTCGATTG+TGG | + | chr6_3:6802914-6802933 | Msa0936140:intron | 45.0% |
| TCTTCCACTGCCATCTGTTA+TGG | + | chr6_3:6803042-6803061 | Msa0936140:intron | 45.0% | |
| ! | CGATATTGACTACGCTGGTT+TGG | + | chr6_3:6803066-6803085 | Msa0936140:intron | 45.0% |
| !! | TGGTTTGGGTTGAAGGAGTT+AGG | + | chr6_3:6803081-6803100 | Msa0936140:intron | 45.0% |
| !! | TTTGGGTTGAAGGAGTTAGG+TGG | + | chr6_3:6803084-6803103 | Msa0936140:intron | 45.0% |
| CAACTACCCTAAGCGTGTTT+AGG | - | chr6_3:6803530-6803549 | None:intergenic | 45.0% | |
| TAGAACACGACAGGGGAATT+CGG | + | chr6_3:6803960-6803979 | Msa0936140:intron | 45.0% | |
| GGGAATTCGGAACAATTTGC+TGG | + | chr6_3:6803973-6803992 | Msa0936140:intron | 45.0% | |
| TCGCTCTTTCGATCCTGATA+TGG | + | chr6_3:6804003-6804022 | Msa0936140:intron | 45.0% | |
| ATCGCACTGGATGTCTTGAT+AGG | + | chr6_3:6804332-6804351 | Msa0936140:intron | 45.0% | |
| AGGAAACGTAGACTATCACC+CGG | + | chr6_3:6804479-6804498 | Msa0936140:CDS | 45.0% | |
| AACTCATCACCATCATCGTC+CGG | - | chr6_3:6804501-6804520 | None:intergenic | 45.0% | |
| ATTGCAGACATGAGTTGTGC+AGG | - | chr6_3:6804622-6804641 | None:intergenic | 45.0% | |
| CTTAATCGTGTTCCATTGGC+AGG | + | chr6_3:6804932-6804951 | Msa0936140:intron | 45.0% | |
| !! | GGGGTGTTGAAGAGAAAATG+AGG | - | chr6_3:6805069-6805088 | None:intergenic | 45.0% |
| GGGGTAAAAATGGGGATTTG+GGG | - | chr6_3:6805088-6805107 | None:intergenic | 45.0% | |
| GGGGGTAAAAATGGGGATTT+GGG | - | chr6_3:6805089-6805108 | None:intergenic | 45.0% | |
| !! | CAACTGGTGTTATACAAGGG+GGG | - | chr6_3:6805107-6805126 | None:intergenic | 45.0% |
| ! | CACCAGTTGTAAGCCTTGTA+CGG | + | chr6_3:6805118-6805137 | Msa0936140:three_prime_UTR | 45.0% |
| TACCGTACAAGGCTTACAAC+TGG | - | chr6_3:6805123-6805142 | None:intergenic | 45.0% | |
| GTGATGCGTGAGAGGATGAA+GGG | - | chr6_3:6800005-6800024 | None:intergenic | 50.0% | |
| !! | AGATGGGTGAGATGGGTTGT+TGG | - | chr6_3:6800027-6800046 | None:intergenic | 50.0% |
| TGGTGAAGAGAAAGGGTCGA+CGG | - | chr6_3:6800103-6800122 | None:intergenic | 50.0% | |
| GCAGGATGTGGTGAAGAGAA+AGG | - | chr6_3:6800111-6800130 | None:intergenic | 50.0% | |
| CGGACACACTTCGATCAGAA+GGG | - | chr6_3:6800758-6800777 | None:intergenic | 50.0% | |
| CCTTCTGATCGAAGTGTGTC+CGG | + | chr6_3:6800756-6800775 | Msa0936140:intron | 50.0% | |
| AGAGTTCGAACATTGGGCAG+AGG | + | chr6_3:6801409-6801428 | Msa0936140:intron | 50.0% | |
| AGTGGAGTGTGGAGGATACT+TGG | + | chr6_3:6801476-6801495 | Msa0936140:intron | 50.0% | |
| ! | TTTTCCTACCAGTCCCCACT+GGG | - | chr6_3:6801834-6801853 | None:intergenic | 50.0% |
| ! | ATTTTCCTACCAGTCCCCAC+TGG | - | chr6_3:6801835-6801854 | None:intergenic | 50.0% |
| ! | AGTGGGGACTGGTAGGAAAA+TGG | + | chr6_3:6801834-6801853 | Msa0936140:intron | 50.0% |
| ! | GTGGGGACTGGTAGGAAAAT+GGG | + | chr6_3:6801835-6801854 | Msa0936140:intron | 50.0% |
| CTGAAATTGGAGAGGGATGC+AGG | + | chr6_3:6801955-6801974 | Msa0936140:intron | 50.0% | |
| CAATAGTGCGGCAATGGTGT+GGG | + | chr6_3:6801982-6802001 | Msa0936140:intron | 50.0% | |
| TGTTGCACTATCGTCACCGT+AGG | - | chr6_3:6802040-6802059 | None:intergenic | 50.0% | |
| TGACGATAGTGCAACAGTGC+TGG | + | chr6_3:6802044-6802063 | Msa0936140:intron | 50.0% | |
| TGTCACCAAATGCATGCGCT+TGG | + | chr6_3:6802170-6802189 | Msa0936140:intron | 50.0% | |
| TGACACCAAGCGCATGCATT+TGG | - | chr6_3:6802178-6802197 | None:intergenic | 50.0% | |
| CGCTATGGAATGCAGAGTAC+AGG | + | chr6_3:6802410-6802429 | Msa0936140:CDS | 50.0% | |
| AGTACAGGATGTCCTTGACG+AGG | + | chr6_3:6802425-6802444 | Msa0936140:CDS | 50.0% | |
| GATGTCCTTGACGAGGAATC+TGG | + | chr6_3:6802432-6802451 | Msa0936140:CDS | 50.0% | |
| AAGAGTTTGGAGGTGAAGGG+TGG | + | chr6_3:6802499-6802518 | Msa0936140:CDS | 50.0% | |
| GGGTGGTGAAGAAGAACATG+GGG | + | chr6_3:6802516-6802535 | Msa0936140:CDS | 50.0% | |
| AGTAATGGCGCAGGAGTCTT+TGG | + | chr6_3:6802595-6802614 | Msa0936140:CDS | 50.0% | |
| ! | TAAGACGCCATAAAGCGCCA+TGG | + | chr6_3:6802975-6802994 | Msa0936140:intron | 50.0% |
| GCCTACTTGTGAAGGATGGT+GGG | - | chr6_3:6803003-6803022 | None:intergenic | 50.0% | |
| TGTGGCCTACTTGTGAAGGA+TGG | - | chr6_3:6803007-6803026 | None:intergenic | 50.0% | |
| ! | ATGGCCGATATTGACTACGC+TGG | + | chr6_3:6803061-6803080 | Msa0936140:intron | 50.0% |
| !! | ACTACGCTGGTTTGGGTTGA+AGG | + | chr6_3:6803074-6803093 | Msa0936140:intron | 50.0% |
| ! | CACTGCGAAGAGCATAGAGA+TGG | - | chr6_3:6803247-6803266 | None:intergenic | 50.0% |
| ! | GCCCCTCCTTAGGCTTTTAT+AGG | - | chr6_3:6803570-6803589 | None:intergenic | 50.0% |
| ATAGTGGCGTTGCAGCACTA+TGG | + | chr6_3:6804081-6804100 | Msa0936140:intron | 50.0% | |
| GTTGCAGCACTATGGCTTAG+TGG | + | chr6_3:6804089-6804108 | Msa0936140:intron | 50.0% | |
| TCCTCCACTTCCTCTGATGA+CGG | - | chr6_3:6804375-6804394 | None:intergenic | 50.0% | |
| ! | TAGAGCTAGCTTCGTCGACA+AGG | - | chr6_3:6804437-6804456 | None:intergenic | 50.0% |
| ACTCATCACCATCATCGTCC+GGG | - | chr6_3:6804500-6804519 | None:intergenic | 50.0% | |
| TGCTAGGTAATCGCGAGAAG+TGG | - | chr6_3:6804538-6804557 | None:intergenic | 50.0% | |
| GGGGGGTAAAAATGGGGATT+TGG | - | chr6_3:6805090-6805109 | None:intergenic | 50.0% | |
| GGTGATGCGTGAGAGGATGA+AGG | - | chr6_3:6800006-6800025 | None:intergenic | 55.0% | |
| !! | GGTTGTTGGTGATGCGTGAG+AGG | - | chr6_3:6800013-6800032 | None:intergenic | 55.0% |
| GGTGGAGAGATGGGTGAGAT+GGG | - | chr6_3:6800034-6800053 | None:intergenic | 55.0% | |
| TGGTGGAGAGATGGGTGAGA+TGG | - | chr6_3:6800035-6800054 | None:intergenic | 55.0% | |
| GGAAGAAGAGAGAGGGGAGA+GGG | - | chr6_3:6800058-6800077 | None:intergenic | 55.0% | |
| AGGAAGAAGAGAGAGGGGAG+AGG | - | chr6_3:6800059-6800078 | None:intergenic | 55.0% | |
| TGAAGAGAAAGGGTCGACGG+TGG | - | chr6_3:6800100-6800119 | None:intergenic | 55.0% | |
| ACATCCTGCCACCACGTTGA+CGG | + | chr6_3:6800122-6800141 | Msa0936140:CDS | 55.0% | |
| CACTGTGAAGCCACGGTTGA+AGG | - | chr6_3:6800177-6800196 | None:intergenic | 55.0% | |
| CCGGACACACTTCGATCAGA+AGG | - | chr6_3:6800759-6800778 | None:intergenic | 55.0% | |
| TTTCCTACCAGTCCCCACTG+GGG | - | chr6_3:6801833-6801852 | None:intergenic | 55.0% | |
| ! | GATGCAGGAGCGCAATAGTG+CGG | + | chr6_3:6801970-6801989 | Msa0936140:intron | 55.0% |
| GCAATAGTGCGGCAATGGTG+TGG | + | chr6_3:6801981-6802000 | Msa0936140:intron | 55.0% | |
| ACTGGTGCACTACCGTCAAC+AGG | - | chr6_3:6802096-6802115 | None:intergenic | 55.0% | |
| ATCACATGCGGATCAAGGGG+CGG | + | chr6_3:6802459-6802478 | Msa0936140:CDS | 55.0% | |
| TACAGCAGCAGTAATGGCGC+AGG | + | chr6_3:6802586-6802605 | Msa0936140:CDS | 55.0% | |
| ! | CTTTGGAGATTTGCCGCCTC+AGG | + | chr6_3:6802612-6802631 | Msa0936140:CDS | 55.0% |
| GCCCACCATCCTTCACAAGT+AGG | + | chr6_3:6802999-6803018 | Msa0936140:intron | 55.0% | |
| GGCCTACTTGTGAAGGATGG+TGG | - | chr6_3:6803004-6803023 | None:intergenic | 55.0% | |
| TCGCTGTGGCCTACTTGTGA+AGG | - | chr6_3:6803011-6803030 | None:intergenic | 55.0% | |
| TCGGCCATAACAGATGGCAG+TGG | - | chr6_3:6803049-6803068 | None:intergenic | 55.0% | |
| GGCTCAGACACGCACAAACA+CGG | - | chr6_3:6803461-6803480 | None:intergenic | 55.0% | |
| !! | AAAGCCTAAGGAGGGGCGTT+TGG | + | chr6_3:6803573-6803592 | Msa0936140:intron | 55.0% |
| AATGTCTCGGCCGTCATCAG+AGG | + | chr6_3:6804362-6804381 | Msa0936140:CDS | 55.0% | |
| GACTATCACCCGGACGATGA+TGG | + | chr6_3:6804489-6804508 | Msa0936140:CDS | 55.0% | |
| !! | GGAGAGGGTGGTGGAGAGAT+GGG | - | chr6_3:6800043-6800062 | None:intergenic | 60.0% |
| AGAAGAGAGAGGGGAGAGGG+TGG | - | chr6_3:6800055-6800074 | None:intergenic | 60.0% | |
| GGCGGAGGAAGAAGAGAGAG+GGG | - | chr6_3:6800064-6800083 | None:intergenic | 60.0% | |
| CGGCGGAGGAAGAAGAGAGA+GGG | - | chr6_3:6800065-6800084 | None:intergenic | 60.0% | |
| ACGGCGGAGGAAGAAGAGAG+AGG | - | chr6_3:6800066-6800085 | None:intergenic | 60.0% | |
| ! | GACGGTGGCGATGGTGATGA+CGG | - | chr6_3:6800085-6800104 | None:intergenic | 60.0% |
| GTCAACGTGGTGGCAGGATG+TGG | - | chr6_3:6800123-6800142 | None:intergenic | 60.0% | |
| CAACGTCGTCTCCGTCAACG+TGG | - | chr6_3:6800136-6800155 | None:intergenic | 60.0% | |
| AGGAAGCTAGGCTACCCCAG+TGG | + | chr6_3:6801816-6801835 | Msa0936140:intron | 60.0% | |
| GGAAGCTAGGCTACCCCAGT+GGG | + | chr6_3:6801817-6801836 | Msa0936140:intron | 60.0% | |
| GAAGCTAGGCTACCCCAGTG+GGG | + | chr6_3:6801818-6801837 | Msa0936140:intron | 60.0% | |
| GGACACCCCGAGTGTGATGT+TGG | + | chr6_3:6801881-6801900 | Msa0936140:intron | 60.0% | |
| CTCGGCCAACATCACACTCG+GGG | - | chr6_3:6801889-6801908 | None:intergenic | 60.0% | |
| CCTCGGCCAACATCACACTC+GGG | - | chr6_3:6801890-6801909 | None:intergenic | 60.0% | |
| GCCTCGGCCAACATCACACT+CGG | - | chr6_3:6801891-6801910 | None:intergenic | 60.0% | |
| GTGTGATGTTGGCCGAGGCT+TGG | + | chr6_3:6801892-6801911 | Msa0936140:intron | 60.0% | |
| CATTCCAACCGGCCAAGCCT+CGG | - | chr6_3:6801907-6801926 | None:intergenic | 60.0% | |
| GGAGCGCAATAGTGCGGCAA+TGG | + | chr6_3:6801976-6801995 | Msa0936140:intron | 60.0% | |
| AGTGCGGCAATGGTGTGGGA+TGG | + | chr6_3:6801986-6802005 | Msa0936140:intron | 60.0% | |
| GCTGGAATGGCACTGTGACG+AGG | + | chr6_3:6802062-6802081 | Msa0936140:intron | 60.0% | |
| GCTTCCAAACGCCCCTCCTT+AGG | - | chr6_3:6803580-6803599 | None:intergenic | 60.0% | |
| TCGGCCGTCATCAGAGGAAG+TGG | + | chr6_3:6804368-6804387 | Msa0936140:CDS | 60.0% | |
| GCCGTCATCAGAGGAAGTGG+AGG | + | chr6_3:6804371-6804390 | Msa0936140:CDS | 60.0% | |
| !! | GGGAGAGGGTGGTGGAGAGA+TGG | - | chr6_3:6800044-6800063 | None:intergenic | 65.0% |
| AGAGAGAGGGGAGAGGGTGG+TGG | - | chr6_3:6800052-6800071 | None:intergenic | 65.0% | |
| !! | GGTGGCGATGGTGATGACGG+CGG | - | chr6_3:6800082-6800101 | None:intergenic | 65.0% |
| GAAAGGGTCGACGGTGGCGA+TGG | - | chr6_3:6800094-6800113 | None:intergenic | 65.0% | |
| GTCTCCGTCAACGTGGTGGC+AGG | - | chr6_3:6800129-6800148 | None:intergenic | 65.0% | |
| CGTCGTCTCCGTCAACGTGG+TGG | - | chr6_3:6800133-6800152 | None:intergenic | 65.0% | |
| TAGGCTACCCCAGTGGGGAC+TGG | + | chr6_3:6801823-6801842 | Msa0936140:intron | 65.0% | |
| ! | CTACCCCAGTGGGGACTGGT+AGG | + | chr6_3:6801827-6801846 | Msa0936140:intron | 65.0% |
| CCCGAGTGTGATGTTGGCCG+AGG | + | chr6_3:6801887-6801906 | Msa0936140:intron | 65.0% | |
| GATGTTGGCCGAGGCTTGGC+CGG | + | chr6_3:6801896-6801915 | Msa0936140:intron | 65.0% | |
| GTGGGCGCCATGGCGCTTTA+TGG | - | chr6_3:6802985-6803004 | None:intergenic | 65.0% | |
| !! | GTGAAGGATGGTGGGCGCCA+TGG | - | chr6_3:6802995-6803014 | None:intergenic | 65.0% |
| !! | GGCGATGGTGATGACGGCGG+AGG | - | chr6_3:6800079-6800098 | None:intergenic | 70.0% |
| TTGGCCGAGGCTTGGCCGGT+TGG | + | chr6_3:6801900-6801919 | Msa0936140:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 6799761 | 6805304 | 6799761 | ID=Msa0936140;Name=Msa0936140 |
| chr6_3 | mRNA | 6799761 | 6805304 | 6799761 | ID=Msa0936140-mRNA-1;Parent=Msa0936140;Name=Msa0936140-mRNA-1;_AED=0.06;_eAED=0.06;_QI=214|0.66|1|1|1|1|4|275|330 |
| chr6_3 | exon | 6799761 | 6800393 | 6799761 | ID=Msa0936140-mRNA-1:exon:2185;Parent=Msa0936140-mRNA-1 |
| chr6_3 | exon | 6802405 | 6802684 | 6802405 | ID=Msa0936140-mRNA-1:exon:2186;Parent=Msa0936140-mRNA-1 |
| chr6_3 | exon | 6804354 | 6804571 | 6804354 | ID=Msa0936140-mRNA-1:exon:2187;Parent=Msa0936140-mRNA-1 |
| chr6_3 | exon | 6804954 | 6805304 | 6804954 | ID=Msa0936140-mRNA-1:exon:2188;Parent=Msa0936140-mRNA-1 |
| chr6_3 | five_prime_UTR | 6799761 | 6799974 | 6799761 | ID=Msa0936140-mRNA-1:five_prime_utr;Parent=Msa0936140-mRNA-1 |
| chr6_3 | CDS | 6799975 | 6800393 | 6799975 | ID=Msa0936140-mRNA-1:cds;Parent=Msa0936140-mRNA-1 |
| chr6_3 | CDS | 6802405 | 6802684 | 6802405 | ID=Msa0936140-mRNA-1:cds;Parent=Msa0936140-mRNA-1 |
| chr6_3 | CDS | 6804354 | 6804571 | 6804354 | ID=Msa0936140-mRNA-1:cds;Parent=Msa0936140-mRNA-1 |
| chr6_3 | CDS | 6804954 | 6805029 | 6804954 | ID=Msa0936140-mRNA-1:cds;Parent=Msa0936140-mRNA-1 |
| chr6_3 | three_prime_UTR | 6805030 | 6805304 | 6805030 | ID=Msa0936140-mRNA-1:three_prime_utr;Parent=Msa0936140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
