AlfalfaGEDB | Msa0328870

M. sativa cultivar zhongmu-4 / Msa0328870

KEGG: K00134
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004365 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0009536 GO:0009555 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0010033 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043891 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0055081 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080022 GO:0080144 GO:0090567 GO:0099402
PFAM: PF00044.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0328870	XP_003596038.1	94.272	419	10	3	1	406	1	418	0.0	789

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0328870	sp\|Q9SAJ6\|G3PP1_ARATH	76.832	423	80	5	1	406	1	422	0.0	630

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000370	Msa0328870	0.806580	7.678079e-50	-8.615850e-47
Msa0000610	Msa0328870	-0.837793	4.213940e-57	-8.615850e-47
Msa0001510	Msa0328870	-0.822663	2.099529e-53	-8.615850e-47
Msa0002110	Msa0328870	-0.832136	1.122968e-55	-8.615850e-47
Msa0002690	Msa0328870	-0.815216	1.035588e-51	-8.615850e-47
Msa0002700	Msa0328870	-0.815865	7.426595e-52	-8.615850e-47
Msa0003340	Msa0328870	-0.815172	1.059204e-51	-8.615850e-47
Msa0004180	Msa0328870	-0.845217	4.659560e-59	-8.615850e-47
Msa0004340	Msa0328870	-0.806241	9.052741e-50	-8.615850e-47
Msa0006080	Msa0328870	0.837115	6.286860e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0328870	MtrunA17_Chr2g0310421	94.272	419	10	3	1	406	1	418	0.0	789
Msa0328870	MtrunA17_Chr6g0458861	69.940	336	87	3	82	403	2	337	6.16e-166	468
Msa0328870	MtrunA17_Chr4g0057861	67.771	332	93	3	83	400	5	336	1.21e-158	450
Msa0328870	MtrunA17_Chr3g0122971	66.766	337	79	3	79	402	2	318	1.56e-157	446
Msa0328870	MtrunA17_Chr8g0357071	63.241	253	79	2	158	399	59	308	1.46e-100	301
Msa0328870	MtrunA17_Chr3g0144151	48.503	334	153	8	80	395	82	414	2.92e-82	259
Msa0328870	MtrunA17_Chr7g0252641	46.951	328	158	6	83	395	69	395	1.70e-76	243
Msa0328870	MtrunA17_Chr8g0360951	71.942	139	31	1	251	389	1	131	9.18e-62	196
Msa0328870	MtrunA17_Chr2g0316821	75.510	49	12	0	291	339	7	55	9.02e-18	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0328870	AT1G79530.1	76.832	423	80	5	1	406	1	422	0.0	630
Msa0328870	AT1G16300.1	74.641	418	92	3	1	404	1	418	0.0	622
Msa0328870	AT1G13440.1	68.675	332	90	3	83	400	5	336	5.11e-163	461
Msa0328870	AT3G04120.1	68.373	332	91	3	83	400	5	336	1.10e-162	461
Msa0328870	AT1G13440.2	62.651	332	82	4	83	400	5	308	2.95e-140	402
Msa0328870	AT1G42970.1	46.418	349	165	9	65	395	66	410	1.49e-86	270
Msa0328870	AT1G12900.3	48.171	328	154	6	83	395	15	341	2.73e-80	251
Msa0328870	AT1G12900.4	48.171	328	154	6	83	395	15	341	2.73e-80	251
Msa0328870	AT1G12900.1	48.171	328	154	6	83	395	64	390	4.78e-80	252
Msa0328870	AT1G12900.5	47.734	331	157	6	80	395	103	432	6.40e-80	253

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Find 135 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAGGCTTGCTTCAG+AGG	0.524629	2_4:-41835680	Msa0328870:intron
AAAGTCCTTCCTGAACTAAA+TGG	0.364181	2_4:-41835911	Msa0328870:CDS
AAATGAAGGCTTGCTTCAGA+GGG	0.591059	2_4:-41835679	Msa0328870:intron
AAATGGAAAACTCACTGGAA+TGG	0.557070	2_4:-41835894	Msa0328870:CDS
AACATAGGTGCATCAGCAGA+TGG	0.588893	2_4:+41836967	None:intergenic
AACCGAGTGTTGGACCTTGT+AGG	0.560181	2_4:-41834890	Msa0328870:CDS
AAGAAACGATGGCAGATCTG+AGG	0.617817	2_4:+41841017	None:intergenic
AAGACAAGGGTTGGAATTAA+CGG	0.470607	2_4:-41839194	Msa0328870:intron
AAGCAGCACTGGGAAGACAA+GGG	0.707230	2_4:-41839207	Msa0328870:CDS
AAGTTCAACCGGTGCTGCAA+AGG	0.540468	2_4:-41836024	Msa0328870:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGTATTTCGTCCAAAATT+TGG	-	chr2_4:41835718-41835737	Msa0328870:intron	30.0%
AGGTTGCAAAACAACATATT+TGG	-	chr2_4:41836271-41836290	Msa0328870:CDS	30.0%
TGTAAGACTAATGAATCACA+TGG	+	chr2_4:41836307-41836326	None:intergenic	30.0%
CATTACATCCTAAATGAAAC+AGG	+	chr2_4:41836789-41836808	None:intergenic	30.0%
CTTATAAGATGCTCATAGTT+TGG	-	chr2_4:41837431-41837450	Msa0328870:CDS	30.0%
TATTTAGACATGTTGGCAAT+AGG	-	chr2_4:41837635-41837654	Msa0328870:intron	30.0%
ACAACTGTAGAAAAGGTAAA+AGG	+	chr2_4:41837745-41837764	None:intergenic	30.0%
CAATTGTACAACTGTAGAAA+AGG	+	chr2_4:41837752-41837771	None:intergenic	30.0%
GTTGTACAATTGCACAAAAT+TGG	-	chr2_4:41837760-41837779	Msa0328870:intron	30.0%
CTCAAATTAAGATTTGAAGG+TGG	+	chr2_4:41838763-41838782	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	41834578	41841246	41834578	ID=Msa0328870;Name=Msa0328870
chr2_4	mRNA	41834578	41841246	41834578	ID=Msa0328870-mRNA-1;Parent=Msa0328870;Name=Msa0328870-mRNA-1;_AED=0.13;_eAED=0.13;_QI=190\|0.84\|0.85\|1\|1\|1\|14\|281\|406
chr2_4	exon	41834578	41834913	41834578	ID=Msa0328870-mRNA-1:exon:12895;Parent=Msa0328870-mRNA-1
chr2_4	exon	41835210	41835275	41835210	ID=Msa0328870-mRNA-1:exon:12894;Parent=Msa0328870-mRNA-1
chr2_4	exon	41835610	41835693	41835610	ID=Msa0328870-mRNA-1:exon:12893;Parent=Msa0328870-mRNA-1
chr2_4	exon	41835800	41835942	41835800	ID=Msa0328870-mRNA-1:exon:12892;Parent=Msa0328870-mRNA-1
chr2_4	exon	41836025	41836122	41836025	ID=Msa0328870-mRNA-1:exon:12891;Parent=Msa0328870-mRNA-1
chr2_4	exon	41836239	41836299	41836239	ID=Msa0328870-mRNA-1:exon:12890;Parent=Msa0328870-mRNA-1
chr2_4	exon	41836873	41837019	41836873	ID=Msa0328870-mRNA-1:exon:12889;Parent=Msa0328870-mRNA-1
chr2_4	exon	41837131	41837230	41837131	ID=Msa0328870-mRNA-1:exon:12888;Parent=Msa0328870-mRNA-1
chr2_4	exon	41837367	41837464	41837367	ID=Msa0328870-mRNA-1:exon:12887;Parent=Msa0328870-mRNA-1
chr2_4	exon	41838425	41838525	41838425	ID=Msa0328870-mRNA-1:exon:12886;Parent=Msa0328870-mRNA-1
chr2_4	exon	41839195	41839233	41839195	ID=Msa0328870-mRNA-1:exon:12885;Parent=Msa0328870-mRNA-1
chr2_4	exon	41839322	41839389	41839322	ID=Msa0328870-mRNA-1:exon:12884;Parent=Msa0328870-mRNA-1
chr2_4	exon	41839498	41839592	41839498	ID=Msa0328870-mRNA-1:exon:12883;Parent=Msa0328870-mRNA-1
chr2_4	exon	41840991	41841246	41840991	ID=Msa0328870-mRNA-1:exon:12882;Parent=Msa0328870-mRNA-1
chr2_4	five_prime_UTR	41841057	41841246	41841057	ID=Msa0328870-mRNA-1:five_prime_utr;Parent=Msa0328870-mRNA-1
chr2_4	CDS	41840991	41841056	41840991	ID=Msa0328870-mRNA-1:cds;Parent=Msa0328870-mRNA-1
chr2_4	CDS	41839498	41839592	41839498	ID=Msa0328870-mRNA-1:cds;Parent=Msa0328870-mRNA-1
chr2_4	CDS	41839322	41839389	41839322	ID=Msa0328870-mRNA-1:cds;Parent=Msa0328870-mRNA-1
chr2_4	CDS	41839195	41839233	41839195	ID=Msa0328870-mRNA-1:cds;Parent=Msa0328870-mRNA-1
chr2_4	CDS	41838425	41838525	41838425	ID=Msa0328870-mRNA-1:cds;Parent=Msa0328870-mRNA-1
chr2_4	CDS	41837367	41837464	41837367	ID=Msa0328870-mRNA-1:cds;Parent=Msa0328870-mRNA-1
chr2_4	CDS	41837131	41837230	41837131	ID=Msa0328870-mRNA-1:cds;Parent=Msa0328870-mRNA-1
chr2_4	CDS	41836873	41837019	41836873	ID=Msa0328870-mRNA-1:cds;Parent=Msa0328870-mRNA-1
chr2_4	CDS	41836239	41836299	41836239	ID=Msa0328870-mRNA-1:cds;Parent=Msa0328870-mRNA-1
chr2_4	CDS	41836025	41836122	41836025	ID=Msa0328870-mRNA-1:cds;Parent=Msa0328870-mRNA-1
chr2_4	CDS	41835800	41835942	41835800	ID=Msa0328870-mRNA-1:cds;Parent=Msa0328870-mRNA-1
chr2_4	CDS	41835610	41835693	41835610	ID=Msa0328870-mRNA-1:cds;Parent=Msa0328870-mRNA-1
chr2_4	CDS	41835210	41835275	41835210	ID=Msa0328870-mRNA-1:cds;Parent=Msa0328870-mRNA-1
chr2_4	CDS	41834859	41834913	41834859	ID=Msa0328870-mRNA-1:cds;Parent=Msa0328870-mRNA-1
chr2_4	three_prime_UTR	41834578	41834858	41834578	ID=Msa0328870-mRNA-1:three_prime_utr;Parent=Msa0328870-mRNA-1

Gene Sequence

>Msa0328870

ATGGCCGCTTCTTCGATCCTCAGATCTGCCATCGTTTCTTCATCTTCTCCCACCGATCTCTTTCAGGTGCTTGGCAATGGCTCAAGTATTAGTTCAAAGTCCACGAGGTTGCAAAACAACATATTTGGAACTTCAATTCCATGTGATTCATTAGTCTTACAAAACTGCAATGCCCGGAGCATGCAGCCTATCAGGGCTACAGCAACGGAAATCCCTCTCCCTGTACAAAACTCAAGCAGCACTGGGAAGACAAGGGTTGGAATTAACGGTTTTGGAAGAATTGGAAGGTTGGTGTTACGTGTAGCTACTTCGCGGGATGATATTGATGTTGTTGCAATTAATGATCCTTTTATTGATGCTAAATATATGTATGATTCCACTCATGGACCATTCAAGGGAACTATTAAGGTTTTGGATGACACTACTTTGGAAATCAATGGGAAGCAGGTTAAAGTTGTGAGCAAAAGAGATCCCGTGGAGATCCCTTGGGGTGATTTTGGTGCTGACTATGTCATTGAGTCTTCAGGAGTTTTTACAACATTAGAGAAAGCGTCATCGCATTTGAAGGCTGGTGCCAAGAAAATCATAATATCAGCTCCATCTGCTGATGCACCTATGTTTGTGGTAGGAGTGAATGAGAAGACATACAACTCCAACATGGACATTGTTTCTAATGCAAGCTGTACAACAAATTGTCTTGCACCTCTTGCCAAGGTGGTTCACGAGGAGTTTGGTATCGTTGAAGGTTTGATGACAACCGTGCATGCAACAACAGCAACACAAAAGACTGTAGATGGTCCTTCAATGAAGGATTGGAGAGGGGGAAGAGGAGCAGCCCAAAATATAATTCCAAGTTCAACCGGTGCTGCAAAGGCTGTTGGCAAAGTCCTTCCTGAACTAAATGGAAAACTCACTGGAATGGCATTTCGTGTACCTACTGCTAATGTTTCTGTCGTGGACTTAACCTGCCGGCTTCAAAAGAATGCCTCCTATGAAGATGTCAAAGCAGCAATAAAGCTTGCTTCAGAGGGACAATTGAAGGGAATTCTTGGATACACAGATGAGGATGTTGTCTCTAATGACTTCGTTGGTGATTCAAGGTCGAGTATCTTTGATGCTAAGGCAGGGATTGGGCTTAGCAAGTCTTTCGTGAAGCTGGTCTCGTGCAACCGAGTGTTGGACCTTGTAGGGCACATGGCATTGGTGGGGGCCCAAAATTGA

Protein sequence

>Msa0328870

MAASSILRSAIVSSSSPTDLFQVLGNGSSISSKSTRLQNNIFGTSIPCDSLVLQNCNARSMQPIRATATEIPLPVQNSSSTGKTRVGINGFGRIGRLVLRVATSRDDIDVVAINDPFIDAKYMYDSTHGPFKGTIKVLDDTTLEINGKQVKVVSKRDPVEIPWGDFGADYVIESSGVFTTLEKASSHLKAGAKKIIISAPSADAPMFVVGVNEKTYNSNMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTANVSVVDLTCRLQKNASYEDVKAAIKLASEGQLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSKSFVKLVSCNRVLDLVGHMALVGAQN*