AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0403740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0403740 MtrunA17_Chr3g0103371 93.960 149 9 0 1 149 1 149 9.14e-92 262
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0403740 AT2G01870.1 37.398 123 61 5 34 149 13 126 4.09e-16 71.2

Find 41 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTCGTGTCTTAAAATT+TGG 0.120400 3_2:-34311480 Msa0403740:five_prime_UTR
GGAAATGAAGATAATGTTTA+TGG 0.128032 3_2:+34311506 None:intergenic
TCAACTTAGGAAAGAATATT+TGG 0.173434 3_2:-34310143 Msa0403740:three_prime_UTR
AAGCTCTTTGAGGGCTTCTT+TGG 0.197880 3_2:+34311209 None:intergenic
AGGGCTTCTTTGGCTTTCTC+TGG 0.231668 3_2:+34311219 None:intergenic
CTGCATAGTTCATGCATTAA+AGG 0.282045 3_2:-34311268 Msa0403740:CDS
GAGAGAGTACCCTTGAGTTT+TGG 0.292782 3_2:+34311144 None:intergenic
CTTCTCGTGTCTTAAAATTT+GGG 0.300531 3_2:-34311479 Msa0403740:five_prime_UTR
CCAATTGATGAAAATTTAAG+TGG 0.385000 3_2:+34310118 None:intergenic
GAAAGTGATGCAAATAATAA+TGG 0.386523 3_2:+34311372 None:intergenic
GTAATTAAGCCAGCCATTGA+TGG 0.399846 3_2:-34310330 Msa0403740:CDS
TTATTACATAATAACGATAA+AGG 0.404120 3_2:-34311342 Msa0403740:CDS
CTGCACTTGGATATAGGTTA+TGG 0.412024 3_2:+34310306 None:intergenic
TCGCGACATATATAAAGTTA+AGG 0.412406 3_2:-34310254 Msa0403740:three_prime_UTR
ACATATATAAAGTTAAGGTT+TGG 0.420592 3_2:-34310249 Msa0403740:three_prime_UTR
TTTCTGGTCAAGCTCTTTGA+GGG 0.426726 3_2:+34311200 None:intergenic
ACCTTTCTTGCACTTCTAGC+TGG 0.428554 3_2:-34310399 Msa0403740:CDS
CACACACTGCACTTGGATAT+AGG 0.429892 3_2:+34310300 None:intergenic
GGGCTTCTTTGGCTTTCTCT+GGG 0.431656 3_2:+34311220 None:intergenic
GTGTGATATTAATTAATTTG+CGG 0.439644 3_2:-34310282 Msa0403740:three_prime_UTR
TTAATATCACACACTGCACT+TGG 0.458769 3_2:+34310293 None:intergenic
TTTCTTGCACTTCTAGCTGG+TGG 0.505803 3_2:-34310396 Msa0403740:CDS
ACCAGCTAGAAGTGCAAGAA+AGG 0.506989 3_2:+34310398 None:intergenic
GGCTGCTTATAGATGCTAAG+AGG 0.520680 3_2:+34311396 None:intergenic
TATAGGTTATGGACCATCAA+TGG 0.534653 3_2:+34310317 None:intergenic
GACAACATTAAAATCAACTT+AGG 0.546871 3_2:-34310156 Msa0403740:three_prime_UTR
TGGCTGGCTTAATTACAGTA+AGG 0.551216 3_2:+34310337 None:intergenic
AGTTTCCTCTCCAAAACTCA+AGG 0.567427 3_2:-34311154 Msa0403740:CDS
GGTTATGGACCATCAATGGC+TGG 0.567707 3_2:+34310321 None:intergenic
CTTATCACCTCCTCTCTCGT+AGG 0.590439 3_2:+34310453 None:intergenic
ATAAAGGCATATTCAAAGAG+AGG 0.608157 3_2:-34311326 Msa0403740:CDS
GTTTCCTCTCCAAAACTCAA+GGG 0.619477 3_2:-34311153 Msa0403740:intron
GAATAACATCTGAATATGAG+TGG 0.621057 3_2:+34311428 None:intergenic
AGAAATGAAGCCTACGAGAG+AGG 0.629871 3_2:-34310463 Msa0403740:CDS
CAGAATCTTAGCAACATGCG+TGG 0.639323 3_2:+34310181 None:intergenic
AGAATCTTAGCAACATGCGT+GGG 0.645379 3_2:+34310182 None:intergenic
AAGGCATATTCAAAGAGAGG+AGG 0.658459 3_2:-34311323 Msa0403740:CDS
AATGAAGCCTACGAGAGAGG+AGG 0.660242 3_2:-34310460 Msa0403740:CDS
GTGAATGTAGTGAAGAGTGA+AGG 0.676798 3_2:-34311457 Msa0403740:five_prime_UTR
AGTGATGCAAATAATAATGG+TGG 0.676828 3_2:+34311375 None:intergenic
GAGGTGATAAGTGACAACAA+TGG 0.780630 3_2:-34310441 Msa0403740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTACATAATAACGATAA+AGG - chr3_2:34310267-34310286 Msa0403740:three_prime_UTR 15.0%
!!! ATTTCCCTTTTTTAATTTTA+CGG - chr3_2:34310630-34310649 Msa0403740:intron 15.0%
!! AAAACCGTAAAATTAAAAAA+GGG + chr3_2:34310637-34310656 None:intergenic 15.0%
!!! TTTGGAAAAAACAATTATTT+TGG - chr3_2:34310668-34310687 Msa0403740:intron 15.0%
!! ATTATTCAACATATTTGAAT+TGG + chr3_2:34310939-34310958 None:intergenic 15.0%
!! AAATATGTTGAATAATAACA+AGG - chr3_2:34310943-34310962 Msa0403740:intron 15.0%
!! TTATTACATAATAACGATAA+AGG - chr3_2:34310267-34310286 Msa0403740:three_prime_UTR 15.0%
!!! ATTTCCCTTTTTTAATTTTA+CGG - chr3_2:34310630-34310649 Msa0403740:intron 15.0%
!! AAAACCGTAAAATTAAAAAA+GGG + chr3_2:34310637-34310656 None:intergenic 15.0%
!!! TTTGGAAAAAACAATTATTT+TGG - chr3_2:34310668-34310687 Msa0403740:intron 15.0%
!! ATTATTCAACATATTTGAAT+TGG + chr3_2:34310939-34310958 None:intergenic 15.0%
!! AAATATGTTGAATAATAACA+AGG - chr3_2:34310943-34310962 Msa0403740:intron 15.0%
!! CAAAATAAGAGAAAAAGAAA+CGG + chr3_2:34310490-34310509 None:intergenic 20.0%
!! CAAAACCGTAAAATTAAAAA+AGG + chr3_2:34310638-34310657 None:intergenic 20.0%
!!! TTACATTTTATCTTGAGTTA+AGG + chr3_2:34310724-34310743 None:intergenic 20.0%
!! CGAAATGTAAATTTAGAAAA+GGG + chr3_2:34310851-34310870 None:intergenic 20.0%
!! ACGAAATGTAAATTTAGAAA+AGG + chr3_2:34310852-34310871 None:intergenic 20.0%
!! ACATCATATATAGTTAATCT+TGG + chr3_2:34310907-34310926 None:intergenic 20.0%
!! AAGTATGTACTATTTATAAG+TGG + chr3_2:34311101-34311120 None:intergenic 20.0%
!!! GTGTGATATTAATTAATTTG+CGG - chr3_2:34311327-34311346 Msa0403740:CDS 20.0%
!! ACATATATAAAGTTAAGGTT+TGG - chr3_2:34311360-34311379 Msa0403740:CDS 20.0%
!! CAAAATAAGAGAAAAAGAAA+CGG + chr3_2:34310490-34310509 None:intergenic 20.0%
!! CAAAACCGTAAAATTAAAAA+AGG + chr3_2:34310638-34310657 None:intergenic 20.0%
!!! TTACATTTTATCTTGAGTTA+AGG + chr3_2:34310724-34310743 None:intergenic 20.0%
!! CGAAATGTAAATTTAGAAAA+GGG + chr3_2:34310851-34310870 None:intergenic 20.0%
!! ACGAAATGTAAATTTAGAAA+AGG + chr3_2:34310852-34310871 None:intergenic 20.0%
!! ACATCATATATAGTTAATCT+TGG + chr3_2:34310907-34310926 None:intergenic 20.0%
!! AAGTATGTACTATTTATAAG+TGG + chr3_2:34311101-34311120 None:intergenic 20.0%
!!! GTGTGATATTAATTAATTTG+CGG - chr3_2:34311327-34311346 Msa0403740:CDS 20.0%
!! ACATATATAAAGTTAAGGTT+TGG - chr3_2:34311360-34311379 Msa0403740:CDS 20.0%
! GGAAATGAAGATAATGTTTA+TGG + chr3_2:34310106-34310125 None:intergenic 25.0%
! GAAAGTGATGCAAATAATAA+TGG + chr3_2:34310240-34310259 None:intergenic 25.0%
!! TAGAGATAGATTGAATTTTC+TGG + chr3_2:34310428-34310447 None:intergenic 25.0%
!! TGTAGTGCTTTTAAATTTTG+TGG - chr3_2:34310526-34310545 Msa0403740:intron 25.0%
! GAAGTTTATGTCTTATGATA+AGG - chr3_2:34310548-34310567 Msa0403740:intron 25.0%
! GAATTGCAATTGATTATAGT+AGG - chr3_2:34310605-34310624 Msa0403740:intron 25.0%
!!! CGGTTTTGTTTATTTCTTTT+TGG - chr3_2:34310650-34310669 Msa0403740:intron 25.0%
! GACTTTACACCTTATTATTA+CGG + chr3_2:34310807-34310826 None:intergenic 25.0%
! AATAATAAGGTGTAAAGTCA+AGG - chr3_2:34310808-34310827 Msa0403740:intron 25.0%
! ATAATAAGGTGTAAAGTCAA+GGG - chr3_2:34310809-34310828 Msa0403740:intron 25.0%
!!! TTCTCTTCATTTTTCATTCT+AGG - chr3_2:34310978-34310997 Msa0403740:intron 25.0%
! GACAACATTAAAATCAACTT+AGG - chr3_2:34311453-34311472 Msa0403740:five_prime_UTR 25.0%
! TCAACTTAGGAAAGAATATT+TGG - chr3_2:34311466-34311485 Msa0403740:five_prime_UTR 25.0%
! CCAATTGATGAAAATTTAAG+TGG + chr3_2:34311494-34311513 None:intergenic 25.0%
!! CCACTTAAATTTTCATCAAT+TGG - chr3_2:34311491-34311510 Msa0403740:five_prime_UTR 25.0%
! GGAAATGAAGATAATGTTTA+TGG + chr3_2:34310106-34310125 None:intergenic 25.0%
! GAAAGTGATGCAAATAATAA+TGG + chr3_2:34310240-34310259 None:intergenic 25.0%
!! TAGAGATAGATTGAATTTTC+TGG + chr3_2:34310428-34310447 None:intergenic 25.0%
!! TGTAGTGCTTTTAAATTTTG+TGG - chr3_2:34310526-34310545 Msa0403740:intron 25.0%
! GAAGTTTATGTCTTATGATA+AGG - chr3_2:34310548-34310567 Msa0403740:intron 25.0%
! GAATTGCAATTGATTATAGT+AGG - chr3_2:34310605-34310624 Msa0403740:intron 25.0%
!!! CGGTTTTGTTTATTTCTTTT+TGG - chr3_2:34310650-34310669 Msa0403740:intron 25.0%
! GACTTTACACCTTATTATTA+CGG + chr3_2:34310807-34310826 None:intergenic 25.0%
! AATAATAAGGTGTAAAGTCA+AGG - chr3_2:34310808-34310827 Msa0403740:intron 25.0%
! ATAATAAGGTGTAAAGTCAA+GGG - chr3_2:34310809-34310828 Msa0403740:intron 25.0%
!!! TTCTCTTCATTTTTCATTCT+AGG - chr3_2:34310978-34310997 Msa0403740:intron 25.0%
! GACAACATTAAAATCAACTT+AGG - chr3_2:34311453-34311472 Msa0403740:five_prime_UTR 25.0%
! TCAACTTAGGAAAGAATATT+TGG - chr3_2:34311466-34311485 Msa0403740:five_prime_UTR 25.0%
! CCAATTGATGAAAATTTAAG+TGG + chr3_2:34311494-34311513 None:intergenic 25.0%
!! CCACTTAAATTTTCATCAAT+TGG - chr3_2:34311491-34311510 Msa0403740:five_prime_UTR 25.0%
CTTCTCGTGTCTTAAAATTT+GGG - chr3_2:34310130-34310149 Msa0403740:three_prime_UTR 30.0%
GAATAACATCTGAATATGAG+TGG + chr3_2:34310184-34310203 None:intergenic 30.0%
AGTGATGCAAATAATAATGG+TGG + chr3_2:34310237-34310256 None:intergenic 30.0%
! ATAAAGGCATATTCAAAGAG+AGG - chr3_2:34310283-34310302 Msa0403740:three_prime_UTR 30.0%
AATTGACCACCGTAATAATA+AGG - chr3_2:34310795-34310814 Msa0403740:intron 30.0%
TTTACACCTTATTATTACGG+TGG + chr3_2:34310804-34310823 None:intergenic 30.0%
ACTTGTATAATCTTAGGAGA+GGG + chr3_2:34310880-34310899 None:intergenic 30.0%
!! TTCATTTTTCATTCTAGGAG+TGG - chr3_2:34310983-34311002 Msa0403740:intron 30.0%
!! TCATTTTTCATTCTAGGAGT+GGG - chr3_2:34310984-34311003 Msa0403740:intron 30.0%
TCGCGACATATATAAAGTTA+AGG - chr3_2:34311355-34311374 Msa0403740:CDS 30.0%
CTTCTCGTGTCTTAAAATTT+GGG - chr3_2:34310130-34310149 Msa0403740:three_prime_UTR 30.0%
GAATAACATCTGAATATGAG+TGG + chr3_2:34310184-34310203 None:intergenic 30.0%
AGTGATGCAAATAATAATGG+TGG + chr3_2:34310237-34310256 None:intergenic 30.0%
! ATAAAGGCATATTCAAAGAG+AGG - chr3_2:34310283-34310302 Msa0403740:three_prime_UTR 30.0%
AATTGACCACCGTAATAATA+AGG - chr3_2:34310795-34310814 Msa0403740:intron 30.0%
TTTACACCTTATTATTACGG+TGG + chr3_2:34310804-34310823 None:intergenic 30.0%
ACTTGTATAATCTTAGGAGA+GGG + chr3_2:34310880-34310899 None:intergenic 30.0%
!! TTCATTTTTCATTCTAGGAG+TGG - chr3_2:34310983-34311002 Msa0403740:intron 30.0%
!! TCATTTTTCATTCTAGGAGT+GGG - chr3_2:34310984-34311003 Msa0403740:intron 30.0%
TCGCGACATATATAAAGTTA+AGG - chr3_2:34311355-34311374 Msa0403740:CDS 30.0%
!!! TTTTAAGACACGAGAAGCAA+TGG + chr3_2:34310127-34310146 None:intergenic 35.0%
GCTTCTCGTGTCTTAAAATT+TGG - chr3_2:34310129-34310148 Msa0403740:three_prime_UTR 35.0%
CTGCATAGTTCATGCATTAA+AGG - chr3_2:34310341-34310360 Msa0403740:CDS 35.0%
TATAACAACGAGTGCAAAGT+AGG + chr3_2:34310696-34310715 None:intergenic 35.0%
CTTTGCACTCGTTGTTATAA+TGG - chr3_2:34310697-34310716 Msa0403740:intron 35.0%
TCAAAGACTAAACCGACTAA+CGG + chr3_2:34310769-34310788 None:intergenic 35.0%
GACTTGTATAATCTTAGGAG+AGG + chr3_2:34310881-34310900 None:intergenic 35.0%
! GGCATGACTTGTATAATCTT+AGG + chr3_2:34310886-34310905 None:intergenic 35.0%
AAATGATACTCTTCGAGTGA+GGG + chr3_2:34311010-34311029 None:intergenic 35.0%
AAAATGATACTCTTCGAGTG+AGG + chr3_2:34311011-34311030 None:intergenic 35.0%
CTCAATGAACTCAAACTCTT+TGG - chr3_2:34311069-34311088 Msa0403740:intron 35.0%
TATAGGTTATGGACCATCAA+TGG + chr3_2:34311295-34311314 None:intergenic 35.0%
TTAATATCACACACTGCACT+TGG + chr3_2:34311319-34311338 None:intergenic 35.0%
ATGCGTGGGATATAAAAACA+TGG + chr3_2:34311416-34311435 None:intergenic 35.0%
!!! TTTTAAGACACGAGAAGCAA+TGG + chr3_2:34310127-34310146 None:intergenic 35.0%
GCTTCTCGTGTCTTAAAATT+TGG - chr3_2:34310129-34310148 Msa0403740:three_prime_UTR 35.0%
CTGCATAGTTCATGCATTAA+AGG - chr3_2:34310341-34310360 Msa0403740:CDS 35.0%
TATAACAACGAGTGCAAAGT+AGG + chr3_2:34310696-34310715 None:intergenic 35.0%
CTTTGCACTCGTTGTTATAA+TGG - chr3_2:34310697-34310716 Msa0403740:intron 35.0%
TCAAAGACTAAACCGACTAA+CGG + chr3_2:34310769-34310788 None:intergenic 35.0%
GACTTGTATAATCTTAGGAG+AGG + chr3_2:34310881-34310900 None:intergenic 35.0%
! GGCATGACTTGTATAATCTT+AGG + chr3_2:34310886-34310905 None:intergenic 35.0%
AAATGATACTCTTCGAGTGA+GGG + chr3_2:34311010-34311029 None:intergenic 35.0%
AAAATGATACTCTTCGAGTG+AGG + chr3_2:34311011-34311030 None:intergenic 35.0%
CTCAATGAACTCAAACTCTT+TGG - chr3_2:34311069-34311088 Msa0403740:intron 35.0%
TATAGGTTATGGACCATCAA+TGG + chr3_2:34311295-34311314 None:intergenic 35.0%
TTAATATCACACACTGCACT+TGG + chr3_2:34311319-34311338 None:intergenic 35.0%
ATGCGTGGGATATAAAAACA+TGG + chr3_2:34311416-34311435 None:intergenic 35.0%
GTGAATGTAGTGAAGAGTGA+AGG - chr3_2:34310152-34310171 Msa0403740:three_prime_UTR 40.0%
AAGGCATATTCAAAGAGAGG+AGG - chr3_2:34310286-34310305 Msa0403740:three_prime_UTR 40.0%
! TTTCTGGTCAAGCTCTTTGA+GGG + chr3_2:34310412-34310431 None:intergenic 40.0%
!! TTTTCTGGTCAAGCTCTTTG+AGG + chr3_2:34310413-34310432 None:intergenic 40.0%
AGTTTCCTCTCCAAAACTCA+AGG - chr3_2:34310455-34310474 Msa0403740:CDS 40.0%
GTTTCCTCTCCAAAACTCAA+GGG - chr3_2:34310456-34310475 Msa0403740:CDS 40.0%
AAAATCCTTCGTGTCTAACG+AGG + chr3_2:34310574-34310593 None:intergenic 40.0%
TAAGGTGTAAAGTCAAGGGT+CGG - chr3_2:34310813-34310832 Msa0403740:intron 40.0%
GAGGTGATAAGTGACAACAA+TGG - chr3_2:34311168-34311187 Msa0403740:CDS 40.0%
!! TGGCTGGCTTAATTACAGTA+AGG + chr3_2:34311275-34311294 None:intergenic 40.0%
GTAATTAAGCCAGCCATTGA+TGG - chr3_2:34311279-34311298 Msa0403740:CDS 40.0%
CTGCACTTGGATATAGGTTA+TGG + chr3_2:34311306-34311325 None:intergenic 40.0%
AGAATCTTAGCAACATGCGT+GGG + chr3_2:34311430-34311449 None:intergenic 40.0%
GTGAATGTAGTGAAGAGTGA+AGG - chr3_2:34310152-34310171 Msa0403740:three_prime_UTR 40.0%
AAGGCATATTCAAAGAGAGG+AGG - chr3_2:34310286-34310305 Msa0403740:three_prime_UTR 40.0%
! TTTCTGGTCAAGCTCTTTGA+GGG + chr3_2:34310412-34310431 None:intergenic 40.0%
!! TTTTCTGGTCAAGCTCTTTG+AGG + chr3_2:34310413-34310432 None:intergenic 40.0%
AGTTTCCTCTCCAAAACTCA+AGG - chr3_2:34310455-34310474 Msa0403740:CDS 40.0%
GTTTCCTCTCCAAAACTCAA+GGG - chr3_2:34310456-34310475 Msa0403740:CDS 40.0%
AAAATCCTTCGTGTCTAACG+AGG + chr3_2:34310574-34310593 None:intergenic 40.0%
TAAGGTGTAAAGTCAAGGGT+CGG - chr3_2:34310813-34310832 Msa0403740:intron 40.0%
GAGGTGATAAGTGACAACAA+TGG - chr3_2:34311168-34311187 Msa0403740:CDS 40.0%
!! TGGCTGGCTTAATTACAGTA+AGG + chr3_2:34311275-34311294 None:intergenic 40.0%
GTAATTAAGCCAGCCATTGA+TGG - chr3_2:34311279-34311298 Msa0403740:CDS 40.0%
CTGCACTTGGATATAGGTTA+TGG + chr3_2:34311306-34311325 None:intergenic 40.0%
AGAATCTTAGCAACATGCGT+GGG + chr3_2:34311430-34311449 None:intergenic 40.0%
GGCTGCTTATAGATGCTAAG+AGG + chr3_2:34310216-34310235 None:intergenic 45.0%
! AAGCTCTTTGAGGGCTTCTT+TGG + chr3_2:34310403-34310422 None:intergenic 45.0%
!!! AGTACCCTTGAGTTTTGGAG+AGG + chr3_2:34310463-34310482 None:intergenic 45.0%
!!! GAGAGAGTACCCTTGAGTTT+TGG + chr3_2:34310468-34310487 None:intergenic 45.0%
AGACGTGTACATCCGTTAGT+CGG - chr3_2:34310754-34310773 Msa0403740:intron 45.0%
AGAAATGAAGCCTACGAGAG+AGG - chr3_2:34311146-34311165 Msa0403740:intron 45.0%
ACCTTTCTTGCACTTCTAGC+TGG - chr3_2:34311210-34311229 Msa0403740:CDS 45.0%
! ACCAGCTAGAAGTGCAAGAA+AGG + chr3_2:34311214-34311233 None:intergenic 45.0%
! TTTCTTGCACTTCTAGCTGG+TGG - chr3_2:34311213-34311232 Msa0403740:CDS 45.0%
CACACACTGCACTTGGATAT+AGG + chr3_2:34311312-34311331 None:intergenic 45.0%
CAGAATCTTAGCAACATGCG+TGG + chr3_2:34311431-34311450 None:intergenic 45.0%
GGCTGCTTATAGATGCTAAG+AGG + chr3_2:34310216-34310235 None:intergenic 45.0%
! AAGCTCTTTGAGGGCTTCTT+TGG + chr3_2:34310403-34310422 None:intergenic 45.0%
!!! AGTACCCTTGAGTTTTGGAG+AGG + chr3_2:34310463-34310482 None:intergenic 45.0%
!!! GAGAGAGTACCCTTGAGTTT+TGG + chr3_2:34310468-34310487 None:intergenic 45.0%
AGACGTGTACATCCGTTAGT+CGG - chr3_2:34310754-34310773 Msa0403740:intron 45.0%
AGAAATGAAGCCTACGAGAG+AGG - chr3_2:34311146-34311165 Msa0403740:intron 45.0%
ACCTTTCTTGCACTTCTAGC+TGG - chr3_2:34311210-34311229 Msa0403740:CDS 45.0%
! ACCAGCTAGAAGTGCAAGAA+AGG + chr3_2:34311214-34311233 None:intergenic 45.0%
! TTTCTTGCACTTCTAGCTGG+TGG - chr3_2:34311213-34311232 Msa0403740:CDS 45.0%
CACACACTGCACTTGGATAT+AGG + chr3_2:34311312-34311331 None:intergenic 45.0%
CAGAATCTTAGCAACATGCG+TGG + chr3_2:34311431-34311450 None:intergenic 45.0%
!! GGGCTTCTTTGGCTTTCTCT+GGG + chr3_2:34310392-34310411 None:intergenic 50.0%
!! AGGGCTTCTTTGGCTTTCTC+TGG + chr3_2:34310393-34310412 None:intergenic 50.0%
TAAGGCCTCGTTAGACACGA+AGG - chr3_2:34310566-34310585 Msa0403740:intron 50.0%
AATGAAGCCTACGAGAGAGG+AGG - chr3_2:34311149-34311168 Msa0403740:intron 50.0%
CTTATCACCTCCTCTCTCGT+AGG + chr3_2:34311159-34311178 None:intergenic 50.0%
GGTTATGGACCATCAATGGC+TGG + chr3_2:34311291-34311310 None:intergenic 50.0%
!! GGGCTTCTTTGGCTTTCTCT+GGG + chr3_2:34310392-34310411 None:intergenic 50.0%
!! AGGGCTTCTTTGGCTTTCTC+TGG + chr3_2:34310393-34310412 None:intergenic 50.0%
TAAGGCCTCGTTAGACACGA+AGG - chr3_2:34310566-34310585 Msa0403740:intron 50.0%
AATGAAGCCTACGAGAGAGG+AGG - chr3_2:34311149-34311168 Msa0403740:intron 50.0%
CTTATCACCTCCTCTCTCGT+AGG + chr3_2:34311159-34311178 None:intergenic 50.0%
GGTTATGGACCATCAATGGC+TGG + chr3_2:34311291-34311310 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 34310090 34311541 34310090 ID=Msa0403740;Name=Msa0403740
chr3_2 mRNA 34310090 34311541 34310090 ID=Msa0403740-mRNA-1;Parent=Msa0403740;Name=Msa0403740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105|1|1|1|1|1|2|233|149
chr3_2 exon 34310090 34310489 34310090 ID=Msa0403740-mRNA-1:exon:6829;Parent=Msa0403740-mRNA-1
chr3_2 exon 34311154 34311541 34311154 ID=Msa0403740-mRNA-1:exon:6828;Parent=Msa0403740-mRNA-1
chr3_2 five_prime_UTR 34311437 34311541 34311437 ID=Msa0403740-mRNA-1:five_prime_utr;Parent=Msa0403740-mRNA-1
chr3_2 CDS 34311154 34311436 34311154 ID=Msa0403740-mRNA-1:cds;Parent=Msa0403740-mRNA-1
chr3_2 CDS 34310323 34310489 34310323 ID=Msa0403740-mRNA-1:cds;Parent=Msa0403740-mRNA-1
chr3_2 three_prime_UTR 34310090 34310322 34310090 ID=Msa0403740-mRNA-1:three_prime_utr;Parent=Msa0403740-mRNA-1
Gene Sequence

>Msa0403740

ATGTTATTCTCTATGAAACCTCTTAGCATCTATAAGCAGCCACCATTATTATTTGCATCACTTTCTAAATCGTTATTACATAATAACGATAAAGGCATATTCAAAGAGAGGAGGCTCATAAAATATTCTTCTTCATTTAATTTATGCTGCATAGTTCATGCATTAAAGGAAGATTCAAAGCAATATGAGATAGACCCAGAGAAAGCCAAAGAAGCCCTCAAAGAGCTTGACCAGAAAATTCAATCTATCTCTAGTAGAGAAGTTTCCTCTCCAAAACTCAAGGTATCAGAAATGAAGCCTACGAGAGAGGAGGTGATAAGTGACAACAATGGTAAGCTAGAAATTTCAGAGACCTTTCTTGCACTTCTAGCTGGTGGACTTGTTCTCTTTACTATATTGTACAATGTACTATTCCTTACTGTAATTAAGCCAGCCATTGATGGTCCATAA

Protein sequence

>Msa0403740

MLFSMKPLSIYKQPPLLFASLSKSLLHNNDKGIFKERRLIKYSSSFNLCCIVHALKEDSKQYEIDPEKAKEALKELDQKIQSISSREVSSPKLKVSEMKPTREEVISDNNGKLEISETFLALLAGGLVLFTILYNVLFLTVIKPAIDGP*