AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0364030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0364030 MtrunA17_Chr3g0103371 93.960 149 9 0 1 149 1 149 9.14e-92 262
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0364030 AT2G01870.1 37.398 123 61 5 34 149 13 126 4.09e-16 71.2

Find 41 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTCGTGTCTTAAAATT+TGG 0.120400 3_1:-56721602 Msa0364030:five_prime_UTR
GGAAATGAAGATAATGTTTA+TGG 0.128032 3_1:+56721628 None:intergenic
TCAACTTAGGAAAGAATATT+TGG 0.173434 3_1:-56720265 Msa0364030:three_prime_UTR
AAGCTCTTTGAGGGCTTCTT+TGG 0.197880 3_1:+56721331 None:intergenic
AGGGCTTCTTTGGCTTTCTC+TGG 0.231668 3_1:+56721341 None:intergenic
CTGCATAGTTCATGCATTAA+AGG 0.282045 3_1:-56721390 Msa0364030:CDS
GAGAGAGTACCCTTGAGTTT+TGG 0.292782 3_1:+56721266 None:intergenic
CTTCTCGTGTCTTAAAATTT+GGG 0.300531 3_1:-56721601 Msa0364030:five_prime_UTR
CCAATTGATGAAAATTTAAG+TGG 0.385000 3_1:+56720240 None:intergenic
GAAAGTGATGCAAATAATAA+TGG 0.386523 3_1:+56721494 None:intergenic
GTAATTAAGCCAGCCATTGA+TGG 0.399846 3_1:-56720452 Msa0364030:CDS
TTATTACATAATAACGATAA+AGG 0.404120 3_1:-56721464 Msa0364030:CDS
CTGCACTTGGATATAGGTTA+TGG 0.412024 3_1:+56720428 None:intergenic
TCGCGACATATATAAAGTTA+AGG 0.412406 3_1:-56720376 Msa0364030:three_prime_UTR
ACATATATAAAGTTAAGGTT+TGG 0.420592 3_1:-56720371 Msa0364030:three_prime_UTR
TTTCTGGTCAAGCTCTTTGA+GGG 0.426726 3_1:+56721322 None:intergenic
ACCTTTCTTGCACTTCTAGC+TGG 0.428554 3_1:-56720521 Msa0364030:CDS
CACACACTGCACTTGGATAT+AGG 0.429892 3_1:+56720422 None:intergenic
GGGCTTCTTTGGCTTTCTCT+GGG 0.431656 3_1:+56721342 None:intergenic
GTGTGATATTAATTAATTTG+CGG 0.439644 3_1:-56720404 Msa0364030:three_prime_UTR
TTAATATCACACACTGCACT+TGG 0.458769 3_1:+56720415 None:intergenic
TTTCTTGCACTTCTAGCTGG+TGG 0.505803 3_1:-56720518 Msa0364030:CDS
ACCAGCTAGAAGTGCAAGAA+AGG 0.506989 3_1:+56720520 None:intergenic
GGCTGCTTATAGATGCTAAG+AGG 0.520680 3_1:+56721518 None:intergenic
TATAGGTTATGGACCATCAA+TGG 0.534653 3_1:+56720439 None:intergenic
GACAACATTAAAATCAACTT+AGG 0.546871 3_1:-56720278 Msa0364030:three_prime_UTR
TGGCTGGCTTAATTACAGTA+AGG 0.551216 3_1:+56720459 None:intergenic
AGTTTCCTCTCCAAAACTCA+AGG 0.567427 3_1:-56721276 Msa0364030:CDS
GGTTATGGACCATCAATGGC+TGG 0.567707 3_1:+56720443 None:intergenic
CTTATCACCTCCTCTCTCGT+AGG 0.590439 3_1:+56720575 None:intergenic
ATAAAGGCATATTCAAAGAG+AGG 0.608157 3_1:-56721448 Msa0364030:CDS
GTTTCCTCTCCAAAACTCAA+GGG 0.619477 3_1:-56721275 Msa0364030:intron
GAATAACATCTGAATATGAG+TGG 0.621057 3_1:+56721550 None:intergenic
AGAAATGAAGCCTACGAGAG+AGG 0.629871 3_1:-56720585 Msa0364030:CDS
CAGAATCTTAGCAACATGCG+TGG 0.639323 3_1:+56720303 None:intergenic
AGAATCTTAGCAACATGCGT+GGG 0.645379 3_1:+56720304 None:intergenic
AAGGCATATTCAAAGAGAGG+AGG 0.658459 3_1:-56721445 Msa0364030:CDS
AATGAAGCCTACGAGAGAGG+AGG 0.660242 3_1:-56720582 Msa0364030:CDS
GTGAATGTAGTGAAGAGTGA+AGG 0.676798 3_1:-56721579 Msa0364030:five_prime_UTR
AGTGATGCAAATAATAATGG+TGG 0.676828 3_1:+56721497 None:intergenic
GAGGTGATAAGTGACAACAA+TGG 0.780630 3_1:-56720563 Msa0364030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTACATAATAACGATAA+AGG - chr3_1:56720389-56720408 Msa0364030:three_prime_UTR 15.0%
!!! ATTTCCCTTTTTTAATTTTA+CGG - chr3_1:56720752-56720771 Msa0364030:intron 15.0%
!! AAAACCGTAAAATTAAAAAA+GGG + chr3_1:56720759-56720778 None:intergenic 15.0%
!!! TTTGGAAAAAACAATTATTT+TGG - chr3_1:56720790-56720809 Msa0364030:intron 15.0%
!! ATTATTCAACATATTTGAAT+TGG + chr3_1:56721061-56721080 None:intergenic 15.0%
!! AAATATGTTGAATAATAACA+AGG - chr3_1:56721065-56721084 Msa0364030:intron 15.0%
!! TTATTACATAATAACGATAA+AGG - chr3_1:56720389-56720408 Msa0364030:three_prime_UTR 15.0%
!!! ATTTCCCTTTTTTAATTTTA+CGG - chr3_1:56720752-56720771 Msa0364030:intron 15.0%
!! AAAACCGTAAAATTAAAAAA+GGG + chr3_1:56720759-56720778 None:intergenic 15.0%
!!! TTTGGAAAAAACAATTATTT+TGG - chr3_1:56720790-56720809 Msa0364030:intron 15.0%
!! ATTATTCAACATATTTGAAT+TGG + chr3_1:56721061-56721080 None:intergenic 15.0%
!! AAATATGTTGAATAATAACA+AGG - chr3_1:56721065-56721084 Msa0364030:intron 15.0%
!! CAAAATAAGAGAAAAAGAAA+CGG + chr3_1:56720612-56720631 None:intergenic 20.0%
!! CAAAACCGTAAAATTAAAAA+AGG + chr3_1:56720760-56720779 None:intergenic 20.0%
!!! TTACATTTTATCTTGAGTTA+AGG + chr3_1:56720846-56720865 None:intergenic 20.0%
!! CGAAATGTAAATTTAGAAAA+GGG + chr3_1:56720973-56720992 None:intergenic 20.0%
!! ACGAAATGTAAATTTAGAAA+AGG + chr3_1:56720974-56720993 None:intergenic 20.0%
!! ACATCATATATAGTTAATCT+TGG + chr3_1:56721029-56721048 None:intergenic 20.0%
!! AAGTATGTACTATTTATAAG+TGG + chr3_1:56721223-56721242 None:intergenic 20.0%
!!! GTGTGATATTAATTAATTTG+CGG - chr3_1:56721449-56721468 Msa0364030:CDS 20.0%
!! ACATATATAAAGTTAAGGTT+TGG - chr3_1:56721482-56721501 Msa0364030:CDS 20.0%
!! CAAAATAAGAGAAAAAGAAA+CGG + chr3_1:56720612-56720631 None:intergenic 20.0%
!! CAAAACCGTAAAATTAAAAA+AGG + chr3_1:56720760-56720779 None:intergenic 20.0%
!!! TTACATTTTATCTTGAGTTA+AGG + chr3_1:56720846-56720865 None:intergenic 20.0%
!! CGAAATGTAAATTTAGAAAA+GGG + chr3_1:56720973-56720992 None:intergenic 20.0%
!! ACGAAATGTAAATTTAGAAA+AGG + chr3_1:56720974-56720993 None:intergenic 20.0%
!! ACATCATATATAGTTAATCT+TGG + chr3_1:56721029-56721048 None:intergenic 20.0%
!! AAGTATGTACTATTTATAAG+TGG + chr3_1:56721223-56721242 None:intergenic 20.0%
!!! GTGTGATATTAATTAATTTG+CGG - chr3_1:56721449-56721468 Msa0364030:CDS 20.0%
!! ACATATATAAAGTTAAGGTT+TGG - chr3_1:56721482-56721501 Msa0364030:CDS 20.0%
! GGAAATGAAGATAATGTTTA+TGG + chr3_1:56720228-56720247 None:intergenic 25.0%
! GAAAGTGATGCAAATAATAA+TGG + chr3_1:56720362-56720381 None:intergenic 25.0%
!! TAGAGATAGATTGAATTTTC+TGG + chr3_1:56720550-56720569 None:intergenic 25.0%
!! TGTAGTGCTTTTAAATTTTG+TGG - chr3_1:56720648-56720667 Msa0364030:intron 25.0%
! GAAGTTTATGTCTTATGATA+AGG - chr3_1:56720670-56720689 Msa0364030:intron 25.0%
! GAATTGCAATTGATTATAGT+AGG - chr3_1:56720727-56720746 Msa0364030:intron 25.0%
!!! CGGTTTTGTTTATTTCTTTT+TGG - chr3_1:56720772-56720791 Msa0364030:intron 25.0%
! GACTTTACACCTTATTATTA+CGG + chr3_1:56720929-56720948 None:intergenic 25.0%
! AATAATAAGGTGTAAAGTCA+AGG - chr3_1:56720930-56720949 Msa0364030:intron 25.0%
! ATAATAAGGTGTAAAGTCAA+GGG - chr3_1:56720931-56720950 Msa0364030:intron 25.0%
!!! TTCTCTTCATTTTTCATTCT+AGG - chr3_1:56721100-56721119 Msa0364030:intron 25.0%
! GACAACATTAAAATCAACTT+AGG - chr3_1:56721575-56721594 Msa0364030:five_prime_UTR 25.0%
! TCAACTTAGGAAAGAATATT+TGG - chr3_1:56721588-56721607 Msa0364030:five_prime_UTR 25.0%
! CCAATTGATGAAAATTTAAG+TGG + chr3_1:56721616-56721635 None:intergenic 25.0%
!! CCACTTAAATTTTCATCAAT+TGG - chr3_1:56721613-56721632 Msa0364030:five_prime_UTR 25.0%
! GGAAATGAAGATAATGTTTA+TGG + chr3_1:56720228-56720247 None:intergenic 25.0%
! GAAAGTGATGCAAATAATAA+TGG + chr3_1:56720362-56720381 None:intergenic 25.0%
!! TAGAGATAGATTGAATTTTC+TGG + chr3_1:56720550-56720569 None:intergenic 25.0%
!! TGTAGTGCTTTTAAATTTTG+TGG - chr3_1:56720648-56720667 Msa0364030:intron 25.0%
! GAAGTTTATGTCTTATGATA+AGG - chr3_1:56720670-56720689 Msa0364030:intron 25.0%
! GAATTGCAATTGATTATAGT+AGG - chr3_1:56720727-56720746 Msa0364030:intron 25.0%
!!! CGGTTTTGTTTATTTCTTTT+TGG - chr3_1:56720772-56720791 Msa0364030:intron 25.0%
! GACTTTACACCTTATTATTA+CGG + chr3_1:56720929-56720948 None:intergenic 25.0%
! AATAATAAGGTGTAAAGTCA+AGG - chr3_1:56720930-56720949 Msa0364030:intron 25.0%
! ATAATAAGGTGTAAAGTCAA+GGG - chr3_1:56720931-56720950 Msa0364030:intron 25.0%
!!! TTCTCTTCATTTTTCATTCT+AGG - chr3_1:56721100-56721119 Msa0364030:intron 25.0%
! GACAACATTAAAATCAACTT+AGG - chr3_1:56721575-56721594 Msa0364030:five_prime_UTR 25.0%
! TCAACTTAGGAAAGAATATT+TGG - chr3_1:56721588-56721607 Msa0364030:five_prime_UTR 25.0%
! CCAATTGATGAAAATTTAAG+TGG + chr3_1:56721616-56721635 None:intergenic 25.0%
!! CCACTTAAATTTTCATCAAT+TGG - chr3_1:56721613-56721632 Msa0364030:five_prime_UTR 25.0%
CTTCTCGTGTCTTAAAATTT+GGG - chr3_1:56720252-56720271 Msa0364030:three_prime_UTR 30.0%
GAATAACATCTGAATATGAG+TGG + chr3_1:56720306-56720325 None:intergenic 30.0%
AGTGATGCAAATAATAATGG+TGG + chr3_1:56720359-56720378 None:intergenic 30.0%
! ATAAAGGCATATTCAAAGAG+AGG - chr3_1:56720405-56720424 Msa0364030:three_prime_UTR 30.0%
AATTGACCACCGTAATAATA+AGG - chr3_1:56720917-56720936 Msa0364030:intron 30.0%
TTTACACCTTATTATTACGG+TGG + chr3_1:56720926-56720945 None:intergenic 30.0%
ACTTGTATAATCTTAGGAGA+GGG + chr3_1:56721002-56721021 None:intergenic 30.0%
!! TTCATTTTTCATTCTAGGAG+TGG - chr3_1:56721105-56721124 Msa0364030:intron 30.0%
!! TCATTTTTCATTCTAGGAGT+GGG - chr3_1:56721106-56721125 Msa0364030:intron 30.0%
TCGCGACATATATAAAGTTA+AGG - chr3_1:56721477-56721496 Msa0364030:CDS 30.0%
CTTCTCGTGTCTTAAAATTT+GGG - chr3_1:56720252-56720271 Msa0364030:three_prime_UTR 30.0%
GAATAACATCTGAATATGAG+TGG + chr3_1:56720306-56720325 None:intergenic 30.0%
AGTGATGCAAATAATAATGG+TGG + chr3_1:56720359-56720378 None:intergenic 30.0%
! ATAAAGGCATATTCAAAGAG+AGG - chr3_1:56720405-56720424 Msa0364030:three_prime_UTR 30.0%
AATTGACCACCGTAATAATA+AGG - chr3_1:56720917-56720936 Msa0364030:intron 30.0%
TTTACACCTTATTATTACGG+TGG + chr3_1:56720926-56720945 None:intergenic 30.0%
ACTTGTATAATCTTAGGAGA+GGG + chr3_1:56721002-56721021 None:intergenic 30.0%
!! TTCATTTTTCATTCTAGGAG+TGG - chr3_1:56721105-56721124 Msa0364030:intron 30.0%
!! TCATTTTTCATTCTAGGAGT+GGG - chr3_1:56721106-56721125 Msa0364030:intron 30.0%
TCGCGACATATATAAAGTTA+AGG - chr3_1:56721477-56721496 Msa0364030:CDS 30.0%
!!! TTTTAAGACACGAGAAGCAA+TGG + chr3_1:56720249-56720268 None:intergenic 35.0%
GCTTCTCGTGTCTTAAAATT+TGG - chr3_1:56720251-56720270 Msa0364030:three_prime_UTR 35.0%
CTGCATAGTTCATGCATTAA+AGG - chr3_1:56720463-56720482 Msa0364030:CDS 35.0%
TATAACAACGAGTGCAAAGT+AGG + chr3_1:56720818-56720837 None:intergenic 35.0%
CTTTGCACTCGTTGTTATAA+TGG - chr3_1:56720819-56720838 Msa0364030:intron 35.0%
TCAAAGACTAAACCGACTAA+CGG + chr3_1:56720891-56720910 None:intergenic 35.0%
GACTTGTATAATCTTAGGAG+AGG + chr3_1:56721003-56721022 None:intergenic 35.0%
! GGCATGACTTGTATAATCTT+AGG + chr3_1:56721008-56721027 None:intergenic 35.0%
AAATGATACTCTTCGAGTGA+GGG + chr3_1:56721132-56721151 None:intergenic 35.0%
AAAATGATACTCTTCGAGTG+AGG + chr3_1:56721133-56721152 None:intergenic 35.0%
CTCAATGAACTCAAACTCTT+TGG - chr3_1:56721191-56721210 Msa0364030:intron 35.0%
TATAGGTTATGGACCATCAA+TGG + chr3_1:56721417-56721436 None:intergenic 35.0%
TTAATATCACACACTGCACT+TGG + chr3_1:56721441-56721460 None:intergenic 35.0%
ATGCGTGGGATATAAAAACA+TGG + chr3_1:56721538-56721557 None:intergenic 35.0%
!!! TTTTAAGACACGAGAAGCAA+TGG + chr3_1:56720249-56720268 None:intergenic 35.0%
GCTTCTCGTGTCTTAAAATT+TGG - chr3_1:56720251-56720270 Msa0364030:three_prime_UTR 35.0%
CTGCATAGTTCATGCATTAA+AGG - chr3_1:56720463-56720482 Msa0364030:CDS 35.0%
TATAACAACGAGTGCAAAGT+AGG + chr3_1:56720818-56720837 None:intergenic 35.0%
CTTTGCACTCGTTGTTATAA+TGG - chr3_1:56720819-56720838 Msa0364030:intron 35.0%
TCAAAGACTAAACCGACTAA+CGG + chr3_1:56720891-56720910 None:intergenic 35.0%
GACTTGTATAATCTTAGGAG+AGG + chr3_1:56721003-56721022 None:intergenic 35.0%
! GGCATGACTTGTATAATCTT+AGG + chr3_1:56721008-56721027 None:intergenic 35.0%
AAATGATACTCTTCGAGTGA+GGG + chr3_1:56721132-56721151 None:intergenic 35.0%
AAAATGATACTCTTCGAGTG+AGG + chr3_1:56721133-56721152 None:intergenic 35.0%
CTCAATGAACTCAAACTCTT+TGG - chr3_1:56721191-56721210 Msa0364030:intron 35.0%
TATAGGTTATGGACCATCAA+TGG + chr3_1:56721417-56721436 None:intergenic 35.0%
TTAATATCACACACTGCACT+TGG + chr3_1:56721441-56721460 None:intergenic 35.0%
ATGCGTGGGATATAAAAACA+TGG + chr3_1:56721538-56721557 None:intergenic 35.0%
GTGAATGTAGTGAAGAGTGA+AGG - chr3_1:56720274-56720293 Msa0364030:three_prime_UTR 40.0%
AAGGCATATTCAAAGAGAGG+AGG - chr3_1:56720408-56720427 Msa0364030:three_prime_UTR 40.0%
! TTTCTGGTCAAGCTCTTTGA+GGG + chr3_1:56720534-56720553 None:intergenic 40.0%
!! TTTTCTGGTCAAGCTCTTTG+AGG + chr3_1:56720535-56720554 None:intergenic 40.0%
AGTTTCCTCTCCAAAACTCA+AGG - chr3_1:56720577-56720596 Msa0364030:CDS 40.0%
GTTTCCTCTCCAAAACTCAA+GGG - chr3_1:56720578-56720597 Msa0364030:CDS 40.0%
AAAATCCTTCGTGTCTAACG+AGG + chr3_1:56720696-56720715 None:intergenic 40.0%
TAAGGTGTAAAGTCAAGGGT+CGG - chr3_1:56720935-56720954 Msa0364030:intron 40.0%
GAGGTGATAAGTGACAACAA+TGG - chr3_1:56721290-56721309 Msa0364030:CDS 40.0%
!! TGGCTGGCTTAATTACAGTA+AGG + chr3_1:56721397-56721416 None:intergenic 40.0%
GTAATTAAGCCAGCCATTGA+TGG - chr3_1:56721401-56721420 Msa0364030:CDS 40.0%
CTGCACTTGGATATAGGTTA+TGG + chr3_1:56721428-56721447 None:intergenic 40.0%
AGAATCTTAGCAACATGCGT+GGG + chr3_1:56721552-56721571 None:intergenic 40.0%
GTGAATGTAGTGAAGAGTGA+AGG - chr3_1:56720274-56720293 Msa0364030:three_prime_UTR 40.0%
AAGGCATATTCAAAGAGAGG+AGG - chr3_1:56720408-56720427 Msa0364030:three_prime_UTR 40.0%
! TTTCTGGTCAAGCTCTTTGA+GGG + chr3_1:56720534-56720553 None:intergenic 40.0%
!! TTTTCTGGTCAAGCTCTTTG+AGG + chr3_1:56720535-56720554 None:intergenic 40.0%
AGTTTCCTCTCCAAAACTCA+AGG - chr3_1:56720577-56720596 Msa0364030:CDS 40.0%
GTTTCCTCTCCAAAACTCAA+GGG - chr3_1:56720578-56720597 Msa0364030:CDS 40.0%
AAAATCCTTCGTGTCTAACG+AGG + chr3_1:56720696-56720715 None:intergenic 40.0%
TAAGGTGTAAAGTCAAGGGT+CGG - chr3_1:56720935-56720954 Msa0364030:intron 40.0%
GAGGTGATAAGTGACAACAA+TGG - chr3_1:56721290-56721309 Msa0364030:CDS 40.0%
!! TGGCTGGCTTAATTACAGTA+AGG + chr3_1:56721397-56721416 None:intergenic 40.0%
GTAATTAAGCCAGCCATTGA+TGG - chr3_1:56721401-56721420 Msa0364030:CDS 40.0%
CTGCACTTGGATATAGGTTA+TGG + chr3_1:56721428-56721447 None:intergenic 40.0%
AGAATCTTAGCAACATGCGT+GGG + chr3_1:56721552-56721571 None:intergenic 40.0%
GGCTGCTTATAGATGCTAAG+AGG + chr3_1:56720338-56720357 None:intergenic 45.0%
! AAGCTCTTTGAGGGCTTCTT+TGG + chr3_1:56720525-56720544 None:intergenic 45.0%
!!! AGTACCCTTGAGTTTTGGAG+AGG + chr3_1:56720585-56720604 None:intergenic 45.0%
!!! GAGAGAGTACCCTTGAGTTT+TGG + chr3_1:56720590-56720609 None:intergenic 45.0%
AGACGTGTACATCCGTTAGT+CGG - chr3_1:56720876-56720895 Msa0364030:intron 45.0%
AGAAATGAAGCCTACGAGAG+AGG - chr3_1:56721268-56721287 Msa0364030:intron 45.0%
ACCTTTCTTGCACTTCTAGC+TGG - chr3_1:56721332-56721351 Msa0364030:CDS 45.0%
! ACCAGCTAGAAGTGCAAGAA+AGG + chr3_1:56721336-56721355 None:intergenic 45.0%
! TTTCTTGCACTTCTAGCTGG+TGG - chr3_1:56721335-56721354 Msa0364030:CDS 45.0%
CACACACTGCACTTGGATAT+AGG + chr3_1:56721434-56721453 None:intergenic 45.0%
CAGAATCTTAGCAACATGCG+TGG + chr3_1:56721553-56721572 None:intergenic 45.0%
GGCTGCTTATAGATGCTAAG+AGG + chr3_1:56720338-56720357 None:intergenic 45.0%
! AAGCTCTTTGAGGGCTTCTT+TGG + chr3_1:56720525-56720544 None:intergenic 45.0%
!!! AGTACCCTTGAGTTTTGGAG+AGG + chr3_1:56720585-56720604 None:intergenic 45.0%
!!! GAGAGAGTACCCTTGAGTTT+TGG + chr3_1:56720590-56720609 None:intergenic 45.0%
AGACGTGTACATCCGTTAGT+CGG - chr3_1:56720876-56720895 Msa0364030:intron 45.0%
AGAAATGAAGCCTACGAGAG+AGG - chr3_1:56721268-56721287 Msa0364030:intron 45.0%
ACCTTTCTTGCACTTCTAGC+TGG - chr3_1:56721332-56721351 Msa0364030:CDS 45.0%
! ACCAGCTAGAAGTGCAAGAA+AGG + chr3_1:56721336-56721355 None:intergenic 45.0%
! TTTCTTGCACTTCTAGCTGG+TGG - chr3_1:56721335-56721354 Msa0364030:CDS 45.0%
CACACACTGCACTTGGATAT+AGG + chr3_1:56721434-56721453 None:intergenic 45.0%
CAGAATCTTAGCAACATGCG+TGG + chr3_1:56721553-56721572 None:intergenic 45.0%
!! GGGCTTCTTTGGCTTTCTCT+GGG + chr3_1:56720514-56720533 None:intergenic 50.0%
!! AGGGCTTCTTTGGCTTTCTC+TGG + chr3_1:56720515-56720534 None:intergenic 50.0%
TAAGGCCTCGTTAGACACGA+AGG - chr3_1:56720688-56720707 Msa0364030:intron 50.0%
AATGAAGCCTACGAGAGAGG+AGG - chr3_1:56721271-56721290 Msa0364030:intron 50.0%
CTTATCACCTCCTCTCTCGT+AGG + chr3_1:56721281-56721300 None:intergenic 50.0%
GGTTATGGACCATCAATGGC+TGG + chr3_1:56721413-56721432 None:intergenic 50.0%
!! GGGCTTCTTTGGCTTTCTCT+GGG + chr3_1:56720514-56720533 None:intergenic 50.0%
!! AGGGCTTCTTTGGCTTTCTC+TGG + chr3_1:56720515-56720534 None:intergenic 50.0%
TAAGGCCTCGTTAGACACGA+AGG - chr3_1:56720688-56720707 Msa0364030:intron 50.0%
AATGAAGCCTACGAGAGAGG+AGG - chr3_1:56721271-56721290 Msa0364030:intron 50.0%
CTTATCACCTCCTCTCTCGT+AGG + chr3_1:56721281-56721300 None:intergenic 50.0%
GGTTATGGACCATCAATGGC+TGG + chr3_1:56721413-56721432 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 56720212 56721663 56720212 ID=Msa0364030;Name=Msa0364030
chr3_1 mRNA 56720212 56721663 56720212 ID=Msa0364030-mRNA-1;Parent=Msa0364030;Name=Msa0364030-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105|1|1|1|1|1|2|233|149
chr3_1 exon 56720212 56720611 56720212 ID=Msa0364030-mRNA-1:exon:10595;Parent=Msa0364030-mRNA-1
chr3_1 exon 56721276 56721663 56721276 ID=Msa0364030-mRNA-1:exon:10594;Parent=Msa0364030-mRNA-1
chr3_1 five_prime_UTR 56721559 56721663 56721559 ID=Msa0364030-mRNA-1:five_prime_utr;Parent=Msa0364030-mRNA-1
chr3_1 CDS 56721276 56721558 56721276 ID=Msa0364030-mRNA-1:cds;Parent=Msa0364030-mRNA-1
chr3_1 CDS 56720445 56720611 56720445 ID=Msa0364030-mRNA-1:cds;Parent=Msa0364030-mRNA-1
chr3_1 three_prime_UTR 56720212 56720444 56720212 ID=Msa0364030-mRNA-1:three_prime_utr;Parent=Msa0364030-mRNA-1
Gene Sequence

>Msa0364030

ATGTTATTCTCTATGAAACCTCTTAGCATCTATAAGCAGCCACCATTATTATTTGCATCACTTTCTAAATCGTTATTACATAATAACGATAAAGGCATATTCAAAGAGAGGAGGCTCATAAAATATTCTTCTTCATTTAATTTATGCTGCATAGTTCATGCATTAAAGGAAGATTCAAAGCAATATGAGATAGACCCAGAGAAAGCCAAAGAAGCCCTCAAAGAGCTTGACCAGAAAATTCAATCTATCTCTAGTAGAGAAGTTTCCTCTCCAAAACTCAAGGTATCAGAAATGAAGCCTACGAGAGAGGAGGTGATAAGTGACAACAATGGTAAGCTAGAAATTTCAGAGACCTTTCTTGCACTTCTAGCTGGTGGACTTGTTCTCTTTACTATATTGTACAATGTACTATTCCTTACTGTAATTAAGCCAGCCATTGATGGTCCATAA

Protein sequence

>Msa0364030

MLFSMKPLSIYKQPPLLFASLSKSLLHNNDKGIFKERRLIKYSSSFNLCCIVHALKEDSKQYEIDPEKAKEALKELDQKIQSISSREVSSPKLKVSEMKPTREEVISDNNGKLEISETFLALLAGGLVLFTILYNVLFLTVIKPAIDGP*