AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0040860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040860 MtrunA17_Chr1g0206141 95.844 385 13 1 1 385 1 382 0.0 758
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040860 AT4G21210.1 59.950 397 133 8 4 385 18 403 9.23e-161 457
Msa0040860 AT3G01200.1 62.466 365 122 6 29 385 20 377 2.76e-148 425
Msa0040860 AT4G21210.2 55.668 397 123 9 4 385 18 376 7.44e-141 405

Find 121 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCATCTCAAAACGCTATT+AGG 0.180944 1_1:+71130442 Msa0040860:CDS
CTGAGAAGGCCTGCAAATTA+TGG 0.189713 1_1:+71129683 Msa0040860:CDS
AATGCCTAGGACTCTCTTTC+AGG 0.211691 1_1:+71130005 Msa0040860:CDS
CATTTGGGTGTGTCTCCTTC+TGG 0.228537 1_1:+71129757 Msa0040860:CDS
ATTCTACGTTATATATATTA+TGG 0.229558 1_1:+71130616 Msa0040860:three_prime_UTR
AACTTTGATGCTTTACAATA+TGG 0.236909 1_1:-71130490 None:intergenic
AACCCTGTCTGGCCTGTTAT+TGG 0.245589 1_1:+71130195 Msa0040860:CDS
TGATGATGTAGAGAGGTTAT+TGG 0.259176 1_1:+71129585 Msa0040860:CDS
GGCCTTCCTCGTGGTGCTTC+GGG 0.269673 1_1:+71129778 Msa0040860:CDS
AGAGGCCATTGCTTCTCATT+TGG 0.277345 1_1:+71129741 Msa0040860:CDS
CCCTGGACCACCGGTTCAGC+TGG 0.278178 1_1:-71127031 None:intergenic
TGGCCTTCCTCGTGGTGCTT+CGG 0.279151 1_1:+71129777 Msa0040860:CDS
GAGGCCATTGCTTCTCATTT+GGG 0.292504 1_1:+71129742 Msa0040860:CDS
CGAGAGGAACTTGAATTTGC+AGG 0.302596 1_1:+71130156 Msa0040860:CDS
TTTGGACATAATCGTGAAAT+TGG 0.309134 1_1:-71126909 None:intergenic
TTAAACTAGTTACCAATAAC+AGG 0.318039 1_1:-71130207 None:intergenic
AATACGTGCCGGTCGAAAAT+TGG 0.320881 1_1:+71127061 Msa0040860:CDS
AAGGCTGATATTGTTCTTAC+CGG 0.326597 1_1:+71129892 Msa0040860:CDS
TGGAGAGTTGTTGGATTCTA+TGG 0.333606 1_1:-71127108 None:intergenic
AGTTGTTGGATTCTATGGTC+TGG 0.342902 1_1:-71127103 None:intergenic
ACACTGTGTTAATGCTGCTT+TGG 0.350893 1_1:+71127241 Msa0040860:CDS
CCCAGCTGAACCGGTGGTCC+AGG 0.354359 1_1:+71127030 Msa0040860:CDS
TTCAGCTGGGGACTCACCTT+GGG 0.380039 1_1:-71127017 None:intergenic
GTTGTTGGATTCTATGGTCT+GGG 0.380440 1_1:-71127102 None:intergenic
CTTACCGGGGTTTCCCGAAC+CGG 0.381722 1_1:+71129907 Msa0040860:CDS
AAAACAAGGGCTAAAACTTT+GGG 0.383297 1_1:+71130087 Msa0040860:CDS
TGAGAAGGCCTGCAAATTAT+GGG 0.385262 1_1:+71129684 Msa0040860:CDS
AGGTGAGTCCCCAGCTGAAC+CGG 0.390015 1_1:+71127021 Msa0040860:CDS
AGCATCTCAAAACGCTATTA+GGG 0.392814 1_1:+71130443 Msa0040860:CDS
TCTTGCACAGAAAGGATATA+AGG 0.396354 1_1:+71129951 Msa0040860:CDS
AGAATCACGAACTAATTATT+CGG 0.401536 1_1:+71130119 Msa0040860:CDS
CACTGTGTTAATGCTGCTTT+GGG 0.405411 1_1:+71127242 Msa0040860:CDS
CAAAGGTGTCTTCCCGGTTC+GGG 0.406454 1_1:-71129920 None:intergenic
AATAGACAAAGGTGTCTTCC+CGG 0.408718 1_1:-71129926 None:intergenic
TCTTTGCTCAAAACCCTGTC+TGG 0.413483 1_1:+71130184 Msa0040860:CDS
TCCACCTCCGGTTCCTTTCG+CGG 0.415535 1_1:+71127127 Msa0040860:CDS
CTTTCAGGTTGATCCAAAGA+AGG 0.417408 1_1:+71130020 Msa0040860:CDS
GATTCTATGGTCTGGGTTCG+AGG 0.419326 1_1:-71127095 None:intergenic
ACAAAGGTGTCTTCCCGGTT+CGG 0.421615 1_1:-71129921 None:intergenic
TATATTGTCTCTGATGGAAC+CGG 0.427728 1_1:+71127206 Msa0040860:CDS
AGGCACACCCCATAATTTGC+AGG 0.429143 1_1:-71129692 None:intergenic
TGTAGAAGTGGATGTGTGTT+TGG 0.429379 1_1:-71126927 None:intergenic
AGGTCGACCGCGAAAGGAAC+CGG 0.432748 1_1:-71127134 None:intergenic
AACCGGAGGTGGAGAGTTGT+TGG 0.438244 1_1:-71127117 None:intergenic
GGTTCCTTTCGCGGTCGACC+TGG 0.440238 1_1:+71127136 Msa0040860:CDS
GAAGCAATGGCCTCTGTAAT+GGG 0.440509 1_1:-71129733 None:intergenic
TGTACTTATGCTTGCGGTCG+TGG 0.443222 1_1:-71130412 None:intergenic
GCCAACGTACCGATTGTAAT+GGG 0.443904 1_1:+71129976 Msa0040860:CDS
TCAATTTATATTGTCTCTGA+TGG 0.444492 1_1:+71127200 Msa0040860:CDS
ACAGGATCGAAGTCAGTTAC+AGG 0.446068 1_1:+71126990 Msa0040860:CDS
GTTCAGCTGGGGACTCACCT+TGG 0.448291 1_1:-71127018 None:intergenic
AGAAGCAATGGCCTCTGTAA+TGG 0.453238 1_1:-71129734 None:intergenic
TGCTGAAGAAAATGAAGAAT+CGG 0.455105 1_1:-71129659 None:intergenic
TTCACTATCAAGCAAGATGA+TGG 0.456113 1_1:+71129847 Msa0040860:CDS
GATAATAAAGCAAGCAGTGA+AGG 0.457050 1_1:+71129609 Msa0040860:CDS
TCTATTTATCTTGCACAGAA+AGG 0.471352 1_1:+71129943 Msa0040860:CDS
TTTGGCTTGACTATAAATCA+TGG 0.473507 1_1:+71130045 Msa0040860:CDS
AGGCTGATATTGTTCTTACC+GGG 0.473769 1_1:+71129893 Msa0040860:CDS
GAAAACATATGAGTACAAAC+AGG 0.474008 1_1:-71127299 None:intergenic
ACCGCGAAAGGAACCGGAGG+TGG 0.478788 1_1:-71127128 None:intergenic
ACAGTGTTCAGCGGTCCAAC+CGG 0.487559 1_1:-71127225 None:intergenic
TGAAGACGGTTCAGAGTTCA+AGG 0.490416 1_1:+71127172 Msa0040860:CDS
GGCACGTATTGCACGAGCCC+TGG 0.490898 1_1:-71127048 None:intergenic
GGTCCTAGTACATTAGTAGA+AGG 0.496207 1_1:-71129712 None:intergenic
CGCCAACGTACCGATTGTAA+TGG 0.502330 1_1:+71129975 Msa0040860:CDS
TCAACCTGAAAGAGAGTCCT+AGG 0.502593 1_1:-71130009 None:intergenic
TTACCAATAACAGGCCAGAC+AGG 0.503657 1_1:-71130198 None:intergenic
GGGTCAGTTTGATTATTGCT+TGG 0.511262 1_1:+71127262 Msa0040860:CDS
CCTGGACCACCGGTTCAGCT+GGG 0.512697 1_1:-71127030 None:intergenic
TGCCCGAAGCACCACGAGGA+AGG 0.516356 1_1:-71129780 None:intergenic
CATGCTTTGATTTGTAGAAG+TGG 0.516416 1_1:-71126939 None:intergenic
CTTCACTGACAGTGTCATCC+AGG 0.521359 1_1:-71127154 None:intergenic
ATTTCCACACCCATTACAAT+CGG 0.523246 1_1:-71129985 None:intergenic
ACGAACTAATTATTCGGAGA+TGG 0.528392 1_1:+71130125 Msa0040860:CDS
GTGCCTTCTACTAATGTACT+AGG 0.528949 1_1:+71129709 Msa0040860:CDS
ATCCAACAACTCTCCACCTC+CGG 0.531155 1_1:+71127115 Msa0040860:CDS
TCATCCAGGTCGACCGCGAA+AGG 0.533115 1_1:-71127140 None:intergenic
CCAGCTGAACCGGTGGTCCA+GGG 0.533135 1_1:+71127031 Msa0040860:CDS
TTGCACGAGCCCTGGACCAC+CGG 0.533336 1_1:-71127040 None:intergenic
AGCAGTGAAGGAAGATGCAT+TGG 0.539636 1_1:+71129621 Msa0040860:CDS
GCACCACGAGGAAGGCCAGA+AGG 0.540325 1_1:-71129772 None:intergenic
AAACTGCAGCCGTTGTATTG+AGG 0.546382 1_1:+71130384 Msa0040860:CDS
GGTAAGAACAATATCAGCCT+TGG 0.556039 1_1:-71129890 None:intergenic
TCACTATCAAGCAAGATGAT+GGG 0.560687 1_1:+71129848 Msa0040860:CDS
TTACCGGGGTTTCCCGAACC+GGG 0.561422 1_1:+71129908 Msa0040860:CDS
ACCCATTACAATCGGTACGT+TGG 0.563055 1_1:-71129977 None:intergenic
TCTCCGATGATTACTTTCGT+AGG 0.573677 1_1:+71129809 Msa0040860:CDS
GATGACACTGTCAGTGAAGA+CGG 0.583603 1_1:+71127158 Msa0040860:CDS
AGGGCTCGTGCAATACGTGC+CGG 0.584604 1_1:+71127050 Msa0040860:CDS
CTGGACCACCGGTTCAGCTG+GGG 0.586413 1_1:-71127029 None:intergenic
AGTTTCAAAATTGATAGCAA+TGG 0.587513 1_1:-71130640 None:intergenic
TCAGCCTTGGCAAGATTCTG+TGG 0.588473 1_1:-71129877 None:intergenic
TACCAATAACAGGCCAGACA+GGG 0.591708 1_1:-71130197 None:intergenic
CGAAAGTAATCATCGGAGAG+TGG 0.593726 1_1:-71129805 None:intergenic
CACACCCAAATGAGAAGCAA+TGG 0.594750 1_1:-71129746 None:intergenic
CGTACCGATTGTAATGGGTG+TGG 0.597883 1_1:+71129981 Msa0040860:CDS
CACTATCAAGCAAGATGATG+GGG 0.598005 1_1:+71129849 Msa0040860:CDS
ATCTCCACAGAATCTTGCCA+AGG 0.605005 1_1:+71129873 Msa0040860:CDS
TCTGGGTTCGAGGACTAGAC+CGG 0.605618 1_1:-71127085 None:intergenic
GATTATTGCTTGGTTGATCG+TGG 0.606004 1_1:+71127272 Msa0040860:CDS
ACTAGATTGATGATGTAGAG+AGG 0.606048 1_1:+71129578 Msa0040860:intron
TGAGTCCCCAGCTGAACCGG+TGG 0.615425 1_1:+71127024 Msa0040860:CDS
AATCCTACGAAAGTAATCAT+CGG 0.619260 1_1:-71129812 None:intergenic
GGAGATGGATTATATTCGAG+AGG 0.620322 1_1:+71130140 Msa0040860:CDS
ACATTGTGTACTTATGCTTG+CGG 0.621650 1_1:-71130418 None:intergenic
GGCTGATATTGTTCTTACCG+GGG 0.633144 1_1:+71129894 Msa0040860:CDS
TAATGGGTGTGGAAATGCCT+AGG 0.639068 1_1:+71129992 Msa0040860:CDS
TGTGCAAGATAAATAGACAA+AGG 0.639412 1_1:-71129937 None:intergenic
CTTCCCGGTTCGGGAAACCC+CGG 0.642703 1_1:-71129911 None:intergenic
GTGCCGGTCGAAAATTGGAC+CGG 0.644141 1_1:+71127066 Msa0040860:CDS
GTCAGTTACAGGAAAACCCA+AGG 0.646536 1_1:+71127001 Msa0040860:CDS
AGCATTAACACAGTGTTCAG+CGG 0.649027 1_1:-71127234 None:intergenic
AGGAACTTGAATTTGCAGGA+AGG 0.656716 1_1:+71130160 Msa0040860:CDS
GAGAAGGCCTGCAAATTATG+GGG 0.658515 1_1:+71129685 Msa0040860:CDS
TCTCCTTCTGGCCTTCCTCG+TGG 0.666025 1_1:+71129769 Msa0040860:CDS
TTGTCTCTGATGGAACCGGT+TGG 0.666341 1_1:+71127210 Msa0040860:CDS
GTGGAAAAGCCTCAATACAA+CGG 0.674206 1_1:-71130393 None:intergenic
TCGACCGCGAAAGGAACCGG+AGG 0.689587 1_1:-71127131 None:intergenic
AAAACATATGAGTACAAACA+GGG 0.728365 1_1:-71127298 None:intergenic
GGAATGCCCGAAGCACCACG+AGG 0.754720 1_1:-71129784 None:intergenic
TGTACTAGGACCCATTACAG+AGG 0.756735 1_1:+71129723 Msa0040860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAAAAATGAATAAATAA+AGG + chr1_1:71127752-71127771 Msa0040860:intron 10.0%
!! AAGAAAAATGAATAAATAAA+GGG + chr1_1:71127753-71127772 Msa0040860:intron 10.0%
!!! ATATTAAAATCATTCAATTT+TGG - chr1_1:71128318-71128337 None:intergenic 10.0%
!!! AAAAAATACATTTTTTTTTG+AGG + chr1_1:71128438-71128457 Msa0040860:intron 10.0%
!! AGAAAAATGAATAAATAAAG+GGG + chr1_1:71127754-71127773 Msa0040860:intron 15.0%
!! AAAGTGAAATATATTGAATT+GGG + chr1_1:71127777-71127796 Msa0040860:intron 15.0%
!! AGTATTAATTAGAGTTATAA+AGG + chr1_1:71127812-71127831 Msa0040860:intron 15.0%
!! GTATTAATTAGAGTTATAAA+GGG + chr1_1:71127813-71127832 Msa0040860:intron 15.0%
!! CAATTATTAAGAGAAATAAA+TGG + chr1_1:71129012-71129031 Msa0040860:intron 15.0%
!! ATTAAATGGAGAAAATTAAA+AGG - chr1_1:71129042-71129061 None:intergenic 15.0%
!!! TAATTTTCTCCATTTAATTA+AGG + chr1_1:71129044-71129063 Msa0040860:intron 15.0%
!!! AATTTTCTCCATTTAATTAA+GGG + chr1_1:71129045-71129064 Msa0040860:intron 15.0%
!! TAAAAATACCCTTAATTAAA+TGG - chr1_1:71129056-71129075 None:intergenic 15.0%
!! TTGAAATTGATCTTATAAAA+TGG + chr1_1:71129104-71129123 Msa0040860:intron 15.0%
!! TGAAATTGATCTTATAAAAT+GGG + chr1_1:71129105-71129124 Msa0040860:intron 15.0%
!! ATTCTACGTTATATATATTA+TGG + chr1_1:71130616-71130635 Msa0040860:three_prime_UTR 15.0%
!! CTATGATAAATATCACAATT+TGG - chr1_1:71127398-71127417 None:intergenic 20.0%
!!! ATAGTAATCTTCATTTTTTG+CGG + chr1_1:71127414-71127433 Msa0040860:intron 20.0%
!!! AATTTTAGTGTTAGAAACTA+TGG - chr1_1:71127680-71127699 None:intergenic 20.0%
!! GAAAGTGAAATATATTGAAT+TGG + chr1_1:71127776-71127795 Msa0040860:intron 20.0%
!! AAAAGTGGAATATATTGAAT+TGG + chr1_1:71127838-71127857 Msa0040860:intron 20.0%
!! AAAGTGGAATATATTGAATT+GGG + chr1_1:71127839-71127858 Msa0040860:intron 20.0%
!!! CTTTTTTTTCTTTCTAAACA+AGG - chr1_1:71128036-71128055 None:intergenic 20.0%
!! ATTGGATGATCTTAATATAT+AGG - chr1_1:71128114-71128133 None:intergenic 20.0%
!!! GTATCTGAATTAAAGTTTTT+TGG - chr1_1:71128255-71128274 None:intergenic 20.0%
!!! CAGATTTTCAAACTTAAAAA+TGG - chr1_1:71128287-71128306 None:intergenic 20.0%
!! TAAGTTTGAAAATCTGAAAA+AGG + chr1_1:71128291-71128310 Msa0040860:intron 20.0%
!! TCAGTTTGTATACATTATAT+CGG + chr1_1:71128397-71128416 Msa0040860:intron 20.0%
!! AGAACGTCATAAAAAAAAAA+TGG + chr1_1:71128567-71128586 Msa0040860:intron 20.0%
!! GAACGTCATAAAAAAAAAAT+GGG + chr1_1:71128568-71128587 Msa0040860:intron 20.0%
!!! TTTTCTTAATTCTTATGCAT+TGG - chr1_1:71128937-71128956 None:intergenic 20.0%
!!! AACATTTTACAAAAATCTGA+GGG + chr1_1:71129357-71129376 Msa0040860:intron 20.0%
!!! GCAATTTTTTTAACAACATA+CGG - chr1_1:71129397-71129416 None:intergenic 20.0%
!!! AAAATAGTCCCTAATTTTTA+CGG - chr1_1:71129424-71129443 None:intergenic 20.0%
!!! ATGATTTTGATTAGTTCAAA+GGG + chr1_1:71130272-71130291 Msa0040860:intron 20.0%
!! TGATATATATGTCACAAAAA+AGG - chr1_1:71130597-71130616 None:intergenic 20.0%
! TCAATTTATATTGTCTCTGA+TGG + chr1_1:71127200-71127219 Msa0040860:CDS 25.0%
! AAAACATATGAGTACAAACA+GGG - chr1_1:71127301-71127320 None:intergenic 25.0%
!! TTTGTACTCATATGTTTTCT+GGG + chr1_1:71127303-71127322 Msa0040860:CDS 25.0%
! AAATAAGTTCCTAAAATGTG+TGG - chr1_1:71127448-71127467 None:intergenic 25.0%
! TAAGTAATAACAATTGTGCA+TGG + chr1_1:71127504-71127523 Msa0040860:intron 25.0%
! AATAGTAACATTTCAATGAG+TGG - chr1_1:71127552-71127571 None:intergenic 25.0%
! TCATGGAGAAATTACATATT+GGG + chr1_1:71127641-71127660 Msa0040860:intron 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr1_1:71127885-71127904 Msa0040860:intron 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr1_1:71127886-71127905 Msa0040860:intron 25.0%
!!! GGACACTTTTTTTTAGTATA+TGG + chr1_1:71127907-71127926 Msa0040860:intron 25.0%
! TATGAAAAAGGGACAAAAAT+TGG - chr1_1:71128132-71128151 None:intergenic 25.0%
!!! TTGTCCCTTTTTCATATTTT+TGG + chr1_1:71128136-71128155 Msa0040860:intron 25.0%
! CAGTCCAAAAATATGAAAAA+GGG - chr1_1:71128143-71128162 None:intergenic 25.0%
!!! CTTTTTCATATTTTTGGACT+GGG + chr1_1:71128142-71128161 Msa0040860:intron 25.0%
!!! TCTGAATTAAAGTTTTTTGG+AGG - chr1_1:71128252-71128271 None:intergenic 25.0%
! AAATGTGTTGAAGAAGAAAA+TGG - chr1_1:71128754-71128773 None:intergenic 25.0%
!!! TGTGTGATTTTTTAAAGTTC+AGG + chr1_1:71128861-71128880 Msa0040860:intron 25.0%
!!! GTGTGATTTTTTAAAGTTCA+GGG + chr1_1:71128862-71128881 Msa0040860:intron 25.0%
!!! TTTTTTTAAAAGTCGGTATC+CGG + chr1_1:71129247-71129266 Msa0040860:intron 25.0%
!! CTCAGATTTTTGTAAAATGT+TGG - chr1_1:71129358-71129377 None:intergenic 25.0%
!! CAACATTTTACAAAAATCTG+AGG + chr1_1:71129356-71129375 Msa0040860:intron 25.0%
! ATTGCTAATCCGTAAAAATT+AGG + chr1_1:71129412-71129431 Msa0040860:intron 25.0%
! TTGCTAATCCGTAAAAATTA+GGG + chr1_1:71129413-71129432 Msa0040860:intron 25.0%
! TGAATAAGAATATTGTTCCA+CGG - chr1_1:71129464-71129483 None:intergenic 25.0%
!! TATAAATCATGGTGTTTTAC+AGG + chr1_1:71130056-71130075 Msa0040860:CDS 25.0%
! AGAATCACGAACTAATTATT+CGG + chr1_1:71130119-71130138 Msa0040860:CDS 25.0%
! TTAAACTAGTTACCAATAAC+AGG - chr1_1:71130210-71130229 None:intergenic 25.0%
! CTTTGAACTAATCAAAATCA+TGG - chr1_1:71130273-71130292 None:intergenic 25.0%
!!! CATGATTTTGATTAGTTCAA+AGG + chr1_1:71130271-71130290 Msa0040860:intron 25.0%
! AACTTTGATGCTTTACAATA+TGG - chr1_1:71130493-71130512 None:intergenic 25.0%
!! AGTTTCAAAATTGATAGCAA+TGG - chr1_1:71130643-71130662 None:intergenic 25.0%
TTTGGACATAATCGTGAAAT+TGG - chr1_1:71126912-71126931 None:intergenic 30.0%
GAAAACATATGAGTACAAAC+AGG - chr1_1:71127302-71127321 None:intergenic 30.0%
! GTTTGTACTCATATGTTTTC+TGG + chr1_1:71127302-71127321 Msa0040860:CDS 30.0%
! TTGTACTCATATGTTTTCTG+GGG + chr1_1:71127304-71127323 Msa0040860:CDS 30.0%
CAAAGTGGATAAAGAATGAA+GGG - chr1_1:71127342-71127361 None:intergenic 30.0%
! GTACATTAACCACACATTTT+AGG + chr1_1:71127436-71127455 Msa0040860:intron 30.0%
AAAAATTGTGCACAACTTGA+CGG - chr1_1:71127473-71127492 None:intergenic 30.0%
ATGTAATAGTATGATCGTCA+TGG + chr1_1:71127624-71127643 Msa0040860:intron 30.0%
GTCATGGAGAAATTACATAT+TGG + chr1_1:71127640-71127659 Msa0040860:intron 30.0%
GAGTTATAAAGGGAAAAAAG+TGG + chr1_1:71127823-71127842 Msa0040860:intron 30.0%
! CTCATATTTTCACTCATTCA+CGG + chr1_1:71128075-71128094 Msa0040860:intron 30.0%
GGATGATCTTAATATATAGG+AGG - chr1_1:71128111-71128130 None:intergenic 30.0%
CCAGTCCAAAAATATGAAAA+AGG - chr1_1:71128144-71128163 None:intergenic 30.0%
!!! CCTTTTTCATATTTTTGGAC+TGG + chr1_1:71128141-71128160 Msa0040860:intron 30.0%
TGATGATAATTCCACATCAT+CGG - chr1_1:71128209-71128228 None:intergenic 30.0%
AAAAAAAAAATGGGCCATTG+AGG + chr1_1:71128577-71128596 Msa0040860:intron 30.0%
AATTGACCAAAGAGATTGAA+GGG - chr1_1:71128780-71128799 None:intergenic 30.0%
TTCAATCTCTTTGGTCAATT+GGG + chr1_1:71128780-71128799 Msa0040860:intron 30.0%
TATGCAAAAGCAAAATCTCA+GGG + chr1_1:71128809-71128828 Msa0040860:intron 30.0%
!!! TGGGACAATTTTTTTTGCAA+AGG + chr1_1:71129124-71129143 Msa0040860:intron 30.0%
CTCTTTATTAGTTGATCCTT+GGG - chr1_1:71129273-71129292 None:intergenic 30.0%
TCTCTTTATTAGTTGATCCT+TGG - chr1_1:71129274-71129293 None:intergenic 30.0%
!!! ACTGTCATTTTACAATGCTA+GGG + chr1_1:71129302-71129321 Msa0040860:intron 30.0%
TGCTGAAGAAAATGAAGAAT+CGG - chr1_1:71129662-71129681 None:intergenic 30.0%
AATCCTACGAAAGTAATCAT+CGG - chr1_1:71129815-71129834 None:intergenic 30.0%
TGTGCAAGATAAATAGACAA+AGG - chr1_1:71129940-71129959 None:intergenic 30.0%
TCTATTTATCTTGCACAGAA+AGG + chr1_1:71129943-71129962 Msa0040860:CDS 30.0%
!! TTTGGCTTGACTATAAATCA+TGG + chr1_1:71130045-71130064 Msa0040860:CDS 30.0%
TACAGGACATTAGAAAAACA+AGG + chr1_1:71130073-71130092 Msa0040860:CDS 30.0%
ACAGGACATTAGAAAAACAA+GGG + chr1_1:71130074-71130093 Msa0040860:CDS 30.0%
AAAAACAAGGGCTAAAACTT+TGG + chr1_1:71130086-71130105 Msa0040860:CDS 30.0%
AAAACAAGGGCTAAAACTTT+GGG + chr1_1:71130087-71130106 Msa0040860:CDS 30.0%
TACATTCAAACTAATGCTGA+TGG + chr1_1:71130308-71130327 Msa0040860:intron 30.0%
!! CATGCTTTGATTTGTAGAAG+TGG - chr1_1:71126942-71126961 None:intergenic 35.0%
TATATTGTCTCTGATGGAAC+CGG + chr1_1:71127206-71127225 Msa0040860:CDS 35.0%
GCAAAGTGGATAAAGAATGA+AGG - chr1_1:71127343-71127362 None:intergenic 35.0%
AAAATTGTGCACAACTTGAC+GGG - chr1_1:71127472-71127491 None:intergenic 35.0%
ATAAGTGTGAAATGAGCCAA+GGG - chr1_1:71127732-71127751 None:intergenic 35.0%
AATAAGTGTGAAATGAGCCA+AGG - chr1_1:71127733-71127752 None:intergenic 35.0%
AGTATATGGCTCAGTTAATC+CGG + chr1_1:71127921-71127940 Msa0040860:intron 35.0%
TCCCTATTTGTAAAACCATG+TGG + chr1_1:71127963-71127982 Msa0040860:intron 35.0%
!! GCCACATGGTTTTACAAATA+GGG - chr1_1:71127967-71127986 None:intergenic 35.0%
CGTGAATGAGTGAAAATATG+AGG - chr1_1:71128077-71128096 None:intergenic 35.0%
!!! CATATTTTTGGACTGGGAAA+TGG + chr1_1:71128148-71128167 Msa0040860:intron 35.0%
GATGATAATTCCACATCATC+GGG - chr1_1:71128208-71128227 None:intergenic 35.0%
! GCTTTTGTACATAACCTCAA+TGG - chr1_1:71128594-71128613 None:intergenic 35.0%
TTTCTTCCCTTCAATCTCTT+TGG + chr1_1:71128771-71128790 Msa0040860:intron 35.0%
CAATTGACCAAAGAGATTGA+AGG - chr1_1:71128781-71128800 None:intergenic 35.0%
CTTCAATCTCTTTGGTCAAT+TGG + chr1_1:71128779-71128798 Msa0040860:intron 35.0%
GTATGCAAAAGCAAAATCTC+AGG + chr1_1:71128808-71128827 Msa0040860:intron 35.0%
! TATTGACATTTTACGATGCC+AGG + chr1_1:71129191-71129210 Msa0040860:intron 35.0%
! ATTGACATTTTACGATGCCA+GGG + chr1_1:71129192-71129211 Msa0040860:intron 35.0%
TTTATTACTACCTTTGTCCC+TGG - chr1_1:71129212-71129231 None:intergenic 35.0%
!!! GACTGTCATTTTACAATGCT+AGG + chr1_1:71129301-71129320 Msa0040860:intron 35.0%
!! ACTAGATTGATGATGTAGAG+AGG + chr1_1:71129578-71129597 Msa0040860:intron 35.0%
! TGATGATGTAGAGAGGTTAT+TGG + chr1_1:71129585-71129604 Msa0040860:CDS 35.0%
GATAATAAAGCAAGCAGTGA+AGG + chr1_1:71129609-71129628 Msa0040860:CDS 35.0%
TTCACTATCAAGCAAGATGA+TGG + chr1_1:71129847-71129866 Msa0040860:CDS 35.0%
TCACTATCAAGCAAGATGAT+GGG + chr1_1:71129848-71129867 Msa0040860:CDS 35.0%
AAGGCTGATATTGTTCTTAC+CGG + chr1_1:71129892-71129911 Msa0040860:CDS 35.0%
TCTTGCACAGAAAGGATATA+AGG + chr1_1:71129951-71129970 Msa0040860:CDS 35.0%
ATTTCCACACCCATTACAAT+CGG - chr1_1:71129988-71130007 None:intergenic 35.0%
! GTTGATCCAAAGAAGGTTTT+TGG + chr1_1:71130027-71130046 Msa0040860:CDS 35.0%
ACGAACTAATTATTCGGAGA+TGG + chr1_1:71130125-71130144 Msa0040860:CDS 35.0%
ACATTGTGTACTTATGCTTG+CGG - chr1_1:71130421-71130440 None:intergenic 35.0%
TAGCATCTCAAAACGCTATT+AGG + chr1_1:71130442-71130461 Msa0040860:CDS 35.0%
AGCATCTCAAAACGCTATTA+GGG + chr1_1:71130443-71130462 Msa0040860:CDS 35.0%
!!! AGTCGTATATTTTAGCCAAC+AGG + chr1_1:71130567-71130586 Msa0040860:three_prime_UTR 35.0%
TGTAGAAGTGGATGTGTGTT+TGG - chr1_1:71126930-71126949 None:intergenic 40.0%
! CGTTGTTGTTGTTGTTGTTG+CGG - chr1_1:71126968-71126987 None:intergenic 40.0%
AACAACAACAACAACGACAC+AGG + chr1_1:71126972-71126991 Msa0040860:CDS 40.0%
GTTGTTGGATTCTATGGTCT+GGG - chr1_1:71127105-71127124 None:intergenic 40.0%
AGTTGTTGGATTCTATGGTC+TGG - chr1_1:71127106-71127125 None:intergenic 40.0%
TGGAGAGTTGTTGGATTCTA+TGG - chr1_1:71127111-71127130 None:intergenic 40.0%
AGCATTAACACAGTGTTCAG+CGG - chr1_1:71127237-71127256 None:intergenic 40.0%
! ACACTGTGTTAATGCTGCTT+TGG + chr1_1:71127241-71127260 Msa0040860:CDS 40.0%
!! CACTGTGTTAATGCTGCTTT+GGG + chr1_1:71127242-71127261 Msa0040860:CDS 40.0%
GGGTCAGTTTGATTATTGCT+TGG + chr1_1:71127262-71127281 Msa0040860:CDS 40.0%
GATTATTGCTTGGTTGATCG+TGG + chr1_1:71127272-71127291 Msa0040860:CDS 40.0%
TGGGTGTGTATAAAGCAAAG+TGG - chr1_1:71127357-71127376 None:intergenic 40.0%
CTCAATTAATTCAGGACGGA+GGG - chr1_1:71127709-71127728 None:intergenic 40.0%
AGGGCTCAATTAATTCAGGA+CGG - chr1_1:71127713-71127732 None:intergenic 40.0%
TCCTGAATTAATTGAGCCCT+TGG + chr1_1:71127713-71127732 Msa0040860:intron 40.0%
GTATATGGCTCAGTTAATCC+GGG + chr1_1:71127922-71127941 Msa0040860:intron 40.0%
!! GGCCACATGGTTTTACAAAT+AGG - chr1_1:71127968-71127987 None:intergenic 40.0%
TTTCATACAACCCGATGATG+TGG + chr1_1:71128195-71128214 Msa0040860:intron 40.0%
ATGTGCAGCAGCTAGATTTA+GGG - chr1_1:71128639-71128658 None:intergenic 40.0%
! TGCACATGTTTTACAGGTTG+TGG + chr1_1:71128652-71128671 Msa0040860:intron 40.0%
AAAGTGCAGCCAACAGAAAT+TGG - chr1_1:71128686-71128705 None:intergenic 40.0%
!!! TTTTAAAGTTCAGGGTGTGC+AGG + chr1_1:71128870-71128889 Msa0040860:intron 40.0%
!! GCAAAGGTGTCTTACATAGA+TGG + chr1_1:71129140-71129159 Msa0040860:intron 40.0%
TTATTAGTTGATCCTTGGGC+CGG - chr1_1:71129269-71129288 None:intergenic 40.0%
GACAAGTATCTACAATTCCG+TGG + chr1_1:71129444-71129463 Msa0040860:intron 40.0%
! ATTTTCTTCAGCAGCTGAGA+AGG + chr1_1:71129669-71129688 Msa0040860:CDS 40.0%
TGAGAAGGCCTGCAAATTAT+GGG + chr1_1:71129684-71129703 Msa0040860:CDS 40.0%
GTGCCTTCTACTAATGTACT+AGG + chr1_1:71129709-71129728 Msa0040860:CDS 40.0%
GGTCCTAGTACATTAGTAGA+AGG - chr1_1:71129715-71129734 None:intergenic 40.0%
TCTCCGATGATTACTTTCGT+AGG + chr1_1:71129809-71129828 Msa0040860:CDS 40.0%
CACTATCAAGCAAGATGATG+GGG + chr1_1:71129849-71129868 Msa0040860:CDS 40.0%
GGTAAGAACAATATCAGCCT+TGG - chr1_1:71129893-71129912 None:intergenic 40.0%
AGGCTGATATTGTTCTTACC+GGG + chr1_1:71129893-71129912 Msa0040860:CDS 40.0%
!! AATAGACAAAGGTGTCTTCC+CGG - chr1_1:71129929-71129948 None:intergenic 40.0%
!! CTTTCAGGTTGATCCAAAGA+AGG + chr1_1:71130020-71130039 Msa0040860:CDS 40.0%
GTCAAGCCAAAAACCTTCTT+TGG - chr1_1:71130036-71130055 None:intergenic 40.0%
!! GGAGATGGATTATATTCGAG+AGG + chr1_1:71130140-71130159 Msa0040860:CDS 40.0%
AGGAACTTGAATTTGCAGGA+AGG + chr1_1:71130160-71130179 Msa0040860:CDS 40.0%
GTGGAAAAGCCTCAATACAA+CGG - chr1_1:71130396-71130415 None:intergenic 40.0%
! CACAAAAAAGGCATACCTGT+TGG - chr1_1:71130585-71130604 None:intergenic 40.0%
ACAGGATCGAAGTCAGTTAC+AGG + chr1_1:71126990-71127009 Msa0040860:CDS 45.0%
GTCAGTTACAGGAAAACCCA+AGG + chr1_1:71127001-71127020 Msa0040860:CDS 45.0%
! AATACGTGCCGGTCGAAAAT+TGG + chr1_1:71127061-71127080 Msa0040860:CDS 45.0%
GATGACACTGTCAGTGAAGA+CGG + chr1_1:71127158-71127177 Msa0040860:CDS 45.0%
TGAAGACGGTTCAGAGTTCA+AGG + chr1_1:71127172-71127191 Msa0040860:CDS 45.0%
GACGAGTTACAGCATTGTGT+GGG - chr1_1:71127376-71127395 None:intergenic 45.0%
GCTCAATTAATTCAGGACGG+AGG - chr1_1:71127710-71127729 None:intergenic 45.0%
GCCAAGGGCTCAATTAATTC+AGG - chr1_1:71127717-71127736 None:intergenic 45.0%
TTGTAAAACCATGTGGCCAG+TGG + chr1_1:71127970-71127989 Msa0040860:intron 45.0%
GTTAAATAGTCTACACCCCC+TGG - chr1_1:71128014-71128033 None:intergenic 45.0%
CATGTGCAGCAGCTAGATTT+AGG - chr1_1:71128640-71128659 None:intergenic 45.0%
! AGCTGCTGCACATGTTTTAC+AGG + chr1_1:71128646-71128665 Msa0040860:intron 45.0%
GCCAACAGAAATTGGAATGG+CGG - chr1_1:71128678-71128697 None:intergenic 45.0%
GCAGCCAACAGAAATTGGAA+TGG - chr1_1:71128681-71128700 None:intergenic 45.0%
TCTCTTTGGTCAATTGGGTC+AGG + chr1_1:71128785-71128804 Msa0040860:intron 45.0%
CTCTTTGGTCAATTGGGTCA+GGG + chr1_1:71128786-71128805 Msa0040860:intron 45.0%
! TTATGCATTGGCCACATGCA+GGG - chr1_1:71128925-71128944 None:intergenic 45.0%
! TTTTACGATGCCAGGGACAA+AGG + chr1_1:71129199-71129218 Msa0040860:intron 45.0%
AGCAGTGAAGGAAGATGCAT+TGG + chr1_1:71129621-71129640 Msa0040860:CDS 45.0%
CTGAGAAGGCCTGCAAATTA+TGG + chr1_1:71129683-71129702 Msa0040860:CDS 45.0%
GAGAAGGCCTGCAAATTATG+GGG + chr1_1:71129685-71129704 Msa0040860:CDS 45.0%
TGTACTAGGACCCATTACAG+AGG + chr1_1:71129723-71129742 Msa0040860:CDS 45.0%
GAAGCAATGGCCTCTGTAAT+GGG - chr1_1:71129736-71129755 None:intergenic 45.0%
AGAAGCAATGGCCTCTGTAA+TGG - chr1_1:71129737-71129756 None:intergenic 45.0%
AGAGGCCATTGCTTCTCATT+TGG + chr1_1:71129741-71129760 Msa0040860:CDS 45.0%
GAGGCCATTGCTTCTCATTT+GGG + chr1_1:71129742-71129761 Msa0040860:CDS 45.0%
CACACCCAAATGAGAAGCAA+TGG - chr1_1:71129749-71129768 None:intergenic 45.0%
CGAAAGTAATCATCGGAGAG+TGG - chr1_1:71129808-71129827 None:intergenic 45.0%
ATCTCCACAGAATCTTGCCA+AGG + chr1_1:71129873-71129892 Msa0040860:CDS 45.0%
GGCTGATATTGTTCTTACCG+GGG + chr1_1:71129894-71129913 Msa0040860:CDS 45.0%
!! GCCAACGTACCGATTGTAAT+GGG + chr1_1:71129976-71129995 Msa0040860:CDS 45.0%
ACCCATTACAATCGGTACGT+TGG - chr1_1:71129980-71129999 None:intergenic 45.0%
! TAATGGGTGTGGAAATGCCT+AGG + chr1_1:71129992-71130011 Msa0040860:CDS 45.0%
AATGCCTAGGACTCTCTTTC+AGG + chr1_1:71130005-71130024 Msa0040860:CDS 45.0%
TCAACCTGAAAGAGAGTCCT+AGG - chr1_1:71130012-71130031 None:intergenic 45.0%
CGAGAGGAACTTGAATTTGC+AGG + chr1_1:71130156-71130175 Msa0040860:CDS 45.0%
TCTTTGCTCAAAACCCTGTC+TGG + chr1_1:71130184-71130203 Msa0040860:CDS 45.0%
TACCAATAACAGGCCAGACA+GGG - chr1_1:71130200-71130219 None:intergenic 45.0%
TTACCAATAACAGGCCAGAC+AGG - chr1_1:71130201-71130220 None:intergenic 45.0%
AAACTGCAGCCGTTGTATTG+AGG + chr1_1:71130384-71130403 Msa0040860:CDS 45.0%
!!! TTTTTATTTACTTATAAAAT+TGG - chr1_1:71128347-71128366 None:intergenic 5.0%
!!! TATTTTATTTTTTTAAAAGT+CGG + chr1_1:71129240-71129259 Msa0040860:intron 5.0%
! AGACCGGTCCAATTTTCGAC+CGG - chr1_1:71127072-71127091 None:intergenic 50.0%
GATTCTATGGTCTGGGTTCG+AGG - chr1_1:71127098-71127117 None:intergenic 50.0%
ATCCAACAACTCTCCACCTC+CGG + chr1_1:71127115-71127134 Msa0040860:CDS 50.0%
CTTCACTGACAGTGTCATCC+AGG - chr1_1:71127157-71127176 None:intergenic 50.0%
TTGTCTCTGATGGAACCGGT+TGG + chr1_1:71127210-71127229 Msa0040860:CDS 50.0%
GGACGAGTTACAGCATTGTG+TGG - chr1_1:71127377-71127396 None:intergenic 50.0%
ATGGCTCAGTTAATCCGGGA+CGG + chr1_1:71127926-71127945 Msa0040860:intron 50.0%
GCCGCCATTCCAATTTCTGT+TGG + chr1_1:71128674-71128693 Msa0040860:intron 50.0%
GCGGAGCTATGTTGATGTGA+GGG - chr1_1:71128902-71128921 None:intergenic 50.0%
! TATGCATTGGCCACATGCAG+GGG - chr1_1:71128924-71128943 None:intergenic 50.0%
! CTTATGCATTGGCCACATGC+AGG - chr1_1:71128926-71128945 None:intergenic 50.0%
! AGGCACACCCCATAATTTGC+AGG - chr1_1:71129695-71129714 None:intergenic 50.0%
CATTTGGGTGTGTCTCCTTC+TGG + chr1_1:71129757-71129776 Msa0040860:CDS 50.0%
TCAGCCTTGGCAAGATTCTG+TGG - chr1_1:71129880-71129899 None:intergenic 50.0%
!! ACAAAGGTGTCTTCCCGGTT+CGG - chr1_1:71129924-71129943 None:intergenic 50.0%
!! CGCCAACGTACCGATTGTAA+TGG + chr1_1:71129975-71129994 Msa0040860:CDS 50.0%
!! CGTACCGATTGTAATGGGTG+TGG + chr1_1:71129981-71130000 Msa0040860:CDS 50.0%
AACCCTGTCTGGCCTGTTAT+TGG + chr1_1:71130195-71130214 Msa0040860:CDS 50.0%
TGTACTTATGCTTGCGGTCG+TGG - chr1_1:71130415-71130434 None:intergenic 50.0%
TTCAGCTGGGGACTCACCTT+GGG - chr1_1:71127020-71127039 None:intergenic 55.0%
! GTGCCGGTCGAAAATTGGAC+CGG + chr1_1:71127066-71127085 Msa0040860:CDS 55.0%
TCTGGGTTCGAGGACTAGAC+CGG - chr1_1:71127088-71127107 None:intergenic 55.0%
AACCGGAGGTGGAGAGTTGT+TGG - chr1_1:71127120-71127139 None:intergenic 55.0%
ACAGTGTTCAGCGGTCCAAC+CGG - chr1_1:71127228-71127247 None:intergenic 55.0%
CTCAGTTAATCCGGGACGGA+GGG + chr1_1:71127930-71127949 Msa0040860:intron 55.0%
AAGATGTACTCCCTCCGTCC+CGG - chr1_1:71127943-71127962 None:intergenic 55.0%
GGCGGAGCTATGTTGATGTG+AGG - chr1_1:71128903-71128922 None:intergenic 55.0%
AAAAGTCGGTATCCGGCCCA+AGG + chr1_1:71129254-71129273 Msa0040860:intron 55.0%
!! CAAAGGTGTCTTCCCGGTTC+GGG - chr1_1:71129923-71129942 None:intergenic 55.0%
GTTCAGCTGGGGACTCACCT+TGG - chr1_1:71127021-71127040 None:intergenic 60.0%
AGGTGAGTCCCCAGCTGAAC+CGG + chr1_1:71127021-71127040 Msa0040860:CDS 60.0%
AGGGCTCGTGCAATACGTGC+CGG + chr1_1:71127050-71127069 Msa0040860:CDS 60.0%
TCCACCTCCGGTTCCTTTCG+CGG + chr1_1:71127127-71127146 Msa0040860:CDS 60.0%
AGGTCGACCGCGAAAGGAAC+CGG - chr1_1:71127137-71127156 None:intergenic 60.0%
TCATCCAGGTCGACCGCGAA+AGG - chr1_1:71127143-71127162 None:intergenic 60.0%
GCTCAGTTAATCCGGGACGG+AGG + chr1_1:71127929-71127948 Msa0040860:intron 60.0%
TGGATACGCCACTGGCCACA+TGG - chr1_1:71127981-71128000 None:intergenic 60.0%
ATGTGGCCAGTGGCGTATCC+AGG + chr1_1:71127980-71127999 Msa0040860:intron 60.0%
GTATCCAGGACCCTGGACCA+GGG + chr1_1:71127994-71128013 Msa0040860:intron 60.0%
TATCCAGGACCCTGGACCAG+GGG + chr1_1:71127995-71128014 Msa0040860:intron 60.0%
AGTCTACACCCCCTGGTCCA+GGG - chr1_1:71128007-71128026 None:intergenic 60.0%
TAGTCTACACCCCCTGGTCC+AGG - chr1_1:71128008-71128027 None:intergenic 60.0%
! TCTCCTTCTGGCCTTCCTCG+TGG + chr1_1:71129769-71129788 Msa0040860:CDS 60.0%
TGGCCTTCCTCGTGGTGCTT+CGG + chr1_1:71129777-71129796 Msa0040860:CDS 60.0%
CTTACCGGGGTTTCCCGAAC+CGG + chr1_1:71129907-71129926 Msa0040860:CDS 60.0%
TTACCGGGGTTTCCCGAACC+GGG + chr1_1:71129908-71129927 Msa0040860:CDS 60.0%
TGAGTCCCCAGCTGAACCGG+TGG + chr1_1:71127024-71127043 Msa0040860:CDS 65.0%
!! CTGGACCACCGGTTCAGCTG+GGG - chr1_1:71127032-71127051 None:intergenic 65.0%
!! CCTGGACCACCGGTTCAGCT+GGG - chr1_1:71127033-71127052 None:intergenic 65.0%
CCAGCTGAACCGGTGGTCCA+GGG + chr1_1:71127031-71127050 Msa0040860:CDS 65.0%
TTGCACGAGCCCTGGACCAC+CGG - chr1_1:71127043-71127062 None:intergenic 65.0%
GGCACGTATTGCACGAGCCC+TGG - chr1_1:71127051-71127070 None:intergenic 65.0%
ACCGCGAAAGGAACCGGAGG+TGG - chr1_1:71127131-71127150 None:intergenic 65.0%
TCGACCGCGAAAGGAACCGG+AGG - chr1_1:71127134-71127153 None:intergenic 65.0%
GGTTCCTTTCGCGGTCGACC+TGG + chr1_1:71127136-71127155 Msa0040860:CDS 65.0%
CAGGGTCCTGGATACGCCAC+TGG - chr1_1:71127989-71128008 None:intergenic 65.0%
CAGTGGCGTATCCAGGACCC+TGG + chr1_1:71127987-71128006 Msa0040860:intron 65.0%
CGTATCCAGGACCCTGGACC+AGG + chr1_1:71127993-71128012 Msa0040860:intron 65.0%
ATCCAGGACCCTGGACCAGG+GGG + chr1_1:71127996-71128015 Msa0040860:intron 65.0%
CATAGCTCCGCCCCTGCATG+TGG + chr1_1:71128911-71128930 Msa0040860:intron 65.0%
! GCATTGGCCACATGCAGGGG+CGG - chr1_1:71128921-71128940 None:intergenic 65.0%
GCACCACGAGGAAGGCCAGA+AGG - chr1_1:71129775-71129794 None:intergenic 65.0%
GGCCTTCCTCGTGGTGCTTC+GGG + chr1_1:71129778-71129797 Msa0040860:CDS 65.0%
! TGCCCGAAGCACCACGAGGA+AGG - chr1_1:71129783-71129802 None:intergenic 65.0%
! GGAATGCCCGAAGCACCACG+AGG - chr1_1:71129787-71129806 None:intergenic 65.0%
!! CTTCCCGGTTCGGGAAACCC+CGG - chr1_1:71129914-71129933 None:intergenic 65.0%
CCCAGCTGAACCGGTGGTCC+AGG + chr1_1:71127030-71127049 Msa0040860:CDS 70.0%
!! CCCTGGACCACCGGTTCAGC+TGG - chr1_1:71127034-71127053 None:intergenic 70.0%
CACCCCCTGGTCCAGGGTCC+TGG - chr1_1:71128001-71128020 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 71126843 71130710 71126843 ID=Msa0040860;Name=Msa0040860
chr1_1 mRNA 71126843 71130710 71126843 ID=Msa0040860-mRNA-1;Parent=Msa0040860;Name=Msa0040860-mRNA-1;_AED=0.05;_eAED=0.05;_QI=63|1|1|1|1|1|3|247|385
chr1_1 exon 71126843 71127325 71126843 ID=Msa0040860-mRNA-1:exon:23499;Parent=Msa0040860-mRNA-1
chr1_1 exon 71129583 71130216 71129583 ID=Msa0040860-mRNA-1:exon:23500;Parent=Msa0040860-mRNA-1
chr1_1 exon 71130360 71130710 71130360 ID=Msa0040860-mRNA-1:exon:23501;Parent=Msa0040860-mRNA-1
chr1_1 five_prime_UTR 71126843 71126905 71126843 ID=Msa0040860-mRNA-1:five_prime_utr;Parent=Msa0040860-mRNA-1
chr1_1 CDS 71126906 71127325 71126906 ID=Msa0040860-mRNA-1:cds;Parent=Msa0040860-mRNA-1
chr1_1 CDS 71129583 71130216 71129583 ID=Msa0040860-mRNA-1:cds;Parent=Msa0040860-mRNA-1
chr1_1 CDS 71130360 71130463 71130360 ID=Msa0040860-mRNA-1:cds;Parent=Msa0040860-mRNA-1
chr1_1 three_prime_UTR 71130464 71130710 71130464 ID=Msa0040860-mRNA-1:three_prime_utr;Parent=Msa0040860-mRNA-1
Gene Sequence

>Msa0040860

ATGCCAATTTCACGATTATGTCCAAACACACATCCACTTCTACAAATCAAAGCATGCAACCGCAACAACAACAACAACAACGACACAGGATCGAAGTCAGTTACAGGAAAACCCAAGGTGAGTCCCCAGCTGAACCGGTGGTCCAGGGCTCGTGCAATACGTGCCGGTCGAAAATTGGACCGGTCTAGTCCTCGAACCCAGACCATAGAATCCAACAACTCTCCACCTCCGGTTCCTTTCGCGGTCGACCTGGATGACACTGTCAGTGAAGACGGTTCAGAGTTCAAGGCTAAGTCAATTTATATTGTCTCTGATGGAACCGGTTGGACCGCTGAACACTGTGTTAATGCTGCTTTGGGTCAGTTTGATTATTGCTTGGTTGATCGTGGTTGCCCTGTTTGTACTCATATGTTTTCTGGGATTGATGATGTAGAGAGGTTATTGGAGATAATAAAGCAAGCAGTGAAGGAAGATGCATTGGTTGTGTATACTTTAGCCGATTCTTCATTTTCTTCAGCAGCTGAGAAGGCCTGCAAATTATGGGGTGTGCCTTCTACTAATGTACTAGGACCCATTACAGAGGCCATTGCTTCTCATTTGGGTGTGTCTCCTTCTGGCCTTCCTCGTGGTGCTTCGGGCATTCCACTCTCCGATGATTACTTTCGTAGGATTGAAGCTATTGAATTCACTATCAAGCAAGATGATGGGGCATCTCCACAGAATCTTGCCAAGGCTGATATTGTTCTTACCGGGGTTTCCCGAACCGGGAAGACACCTTTGTCTATTTATCTTGCACAGAAAGGATATAAGGTCGCCAACGTACCGATTGTAATGGGTGTGGAAATGCCTAGGACTCTCTTTCAGGTTGATCCAAAGAAGGTTTTTGGCTTGACTATAAATCATGGTGTTTTACAGGACATTAGAAAAACAAGGGCTAAAACTTTGGGATTTAGTTCAGAATCACGAACTAATTATTCGGAGATGGATTATATTCGAGAGGAACTTGAATTTGCAGGAAGGCTCTTTGCTCAAAACCCTGTCTGGCCTGTTATTGATGTGACTGCTAAAGCGATAGAAGAAACTGCAGCCGTTGTATTGAGGCTTTTCCACGACCGCAAGCATAAGTACACAATGTCTAGCATCTCAAAACGCTATTAG

Protein sequence

>Msa0040860

MPISRLCPNTHPLLQIKACNRNNNNNNDTGSKSVTGKPKVSPQLNRWSRARAIRAGRKLDRSSPRTQTIESNNSPPPVPFAVDLDDTVSEDGSEFKAKSIYIVSDGTGWTAEHCVNAALGQFDYCLVDRGCPVCTHMFSGIDDVERLLEIIKQAVKEDALVVYTLADSSFSSAAEKACKLWGVPSTNVLGPITEAIASHLGVSPSGLPRGASGIPLSDDYFRRIEAIEFTIKQDDGASPQNLAKADIVLTGVSRTGKTPLSIYLAQKGYKVANVPIVMGVEMPRTLFQVDPKKVFGLTINHGVLQDIRKTRAKTLGFSSESRTNYSEMDYIREELEFAGRLFAQNPVWPVIDVTAKAIEETAAVVLRLFHDRKHKYTMSSISKRY*