AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1341390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341390 MtrunA17_Chr7g0274821 93.733 367 11 4 1 355 1 367 0.0 680
Msa1341390 MtrunA17_Chr1g0190011 55.882 340 132 6 13 350 5 328 4.76e-118 344
Msa1341390 MtrunA17_Chr1g0179461 42.157 204 83 6 66 244 69 262 2.78e-38 140
Msa1341390 MtrunA17_Chr5g0397551 39.453 256 121 12 65 293 69 317 1.23e-37 137
Msa1341390 MtrunA17_Chr7g0245841 47.396 192 92 5 66 250 60 249 4.78e-36 133
Msa1341390 MtrunA17_Chr8g0349091 44.131 213 96 5 54 250 77 282 5.80e-36 133
Msa1341390 MtrunA17_Chr4g0056761 43.810 210 103 4 52 248 58 265 1.50e-34 129
Msa1341390 MtrunA17_Chr7g0247431 40.385 208 110 4 63 257 86 292 3.06e-34 129
Msa1341390 MtrunA17_Chr4g0054661 38.912 239 116 6 28 246 31 259 3.40e-34 129
Msa1341390 MtrunA17_Chr8g0386741 36.444 225 125 6 63 271 94 316 2.45e-33 126
Msa1341390 MtrunA17_Chr1g0188211 40.000 230 101 7 41 244 31 249 3.32e-33 126
Msa1341390 MtrunA17_Chr8g0351761 34.516 310 162 11 52 334 56 351 2.06e-32 124
Msa1341390 MtrunA17_Chr5g0398621 38.947 190 95 5 62 244 42 217 2.01e-30 116
Msa1341390 MtrunA17_Chr6g0476061 49.167 120 58 1 128 244 127 246 7.67e-29 114
Msa1341390 MtrunA17_Chr1g0168121 40.299 134 79 1 111 243 48 181 1.24e-22 95.9
Msa1341390 MtrunA17_Chr4g0027371 45.600 125 58 3 127 243 15 137 7.37e-22 93.2
Msa1341390 MtrunA17_Chr4g0027351 44.068 118 63 3 124 238 11 128 1.41e-20 86.7
Msa1341390 MtrunA17_Chr1g0190051 42.857 133 68 1 111 243 89 213 1.76e-20 90.5
Msa1341390 MtrunA17_Chr3g0112131 37.594 133 75 1 111 243 94 218 9.60e-20 88.6
Msa1341390 MtrunA17_Chr4g0027331 42.373 118 62 3 126 237 14 131 3.31e-19 82.8
Msa1341390 MtrunA17_Chr1g0165101 32.210 267 131 11 14 256 51 291 8.49e-18 83.6
Msa1341390 MtrunA17_Chr3g0133051 32.609 138 89 2 110 243 80 217 1.26e-17 82.0
Msa1341390 MtrunA17_Chr5g0398531 37.288 118 74 0 126 243 122 239 2.15e-17 82.0
Msa1341390 MtrunA17_Chr5g0427311 33.333 117 75 2 130 243 79 195 2.41e-17 80.5
Msa1341390 MtrunA17_Chr6g0476241 32.701 211 100 7 49 243 103 287 2.99e-17 81.3
Msa1341390 MtrunA17_Chr8g0351651 28.814 236 124 4 14 243 28 225 4.37e-17 80.9
Msa1341390 MtrunA17_Chr7g0250031 36.090 133 77 1 111 243 72 196 1.10e-16 79.0
Msa1341390 MtrunA17_Chr5g0443311 27.778 234 126 4 11 244 1 191 1.11e-16 79.0
Msa1341390 MtrunA17_Chr5g0417581 33.529 170 86 5 128 273 16 182 2.87e-16 76.6
Msa1341390 MtrunA17_Chr3g0086021 30.168 179 111 4 98 270 78 248 3.81e-14 72.4
Msa1341390 MtrunA17_Chr4g0027301 39.823 113 58 3 134 238 29 139 7.85e-14 68.2
Msa1341390 MtrunA17_Chr5g0435681 33.913 115 76 0 129 243 114 228 1.74e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341390 AT3G04590.2 50.725 345 125 11 43 355 80 411 7.29e-86 265
Msa1341390 AT3G04590.1 56.540 237 78 5 43 264 80 306 4.74e-70 221
Msa1341390 AT5G28590.1 46.256 227 81 7 121 337 20 215 2.78e-47 160
Msa1341390 AT2G33620.1 45.078 193 100 3 63 250 94 285 3.34e-45 158
Msa1341390 AT2G33620.4 45.078 193 100 3 63 250 94 285 3.34e-45 158
Msa1341390 AT2G33620.2 45.078 193 100 3 63 250 94 285 3.34e-45 158
Msa1341390 AT2G33620.3 45.078 193 100 3 63 250 94 285 3.34e-45 158
Msa1341390 AT4G12080.1 39.689 257 128 8 66 299 89 341 2.49e-44 156
Msa1341390 AT4G25320.1 44.131 213 101 5 50 244 70 282 5.22e-43 154
Msa1341390 AT2G45850.1 44.898 196 96 4 64 252 96 286 1.62e-41 149
Msa1341390 AT2G45850.2 44.898 196 96 4 64 252 96 286 1.62e-41 149
Msa1341390 AT2G45850.3 44.385 187 92 4 64 243 96 277 1.45e-38 139
Msa1341390 AT5G62260.1 37.611 226 103 6 55 250 65 282 1.78e-37 139
Msa1341390 AT5G62260.3 37.611 226 103 6 55 250 65 282 1.78e-37 139
Msa1341390 AT1G63480.5 43.590 195 92 6 65 251 92 276 3.13e-36 135
Msa1341390 AT1G63480.7 43.590 195 92 6 65 251 92 276 3.13e-36 135
Msa1341390 AT1G63480.4 43.590 195 92 6 65 251 92 276 3.13e-36 135
Msa1341390 AT1G63480.3 43.590 195 92 6 65 251 92 276 3.13e-36 135
Msa1341390 AT1G63480.6 43.590 195 92 6 65 251 92 276 3.13e-36 135
Msa1341390 AT1G63480.2 43.590 195 92 6 65 251 98 282 3.90e-36 134
Msa1341390 AT1G63480.1 43.590 195 92 6 65 251 98 282 3.90e-36 134
Msa1341390 AT4G17950.1 36.626 243 120 6 65 277 130 368 5.17e-36 136
Msa1341390 AT5G62260.2 38.785 214 93 6 55 238 65 270 1.19e-35 131
Msa1341390 AT5G51590.1 55.556 117 49 1 131 244 178 294 2.19e-35 134
Msa1341390 AT5G46640.1 41.102 236 107 6 65 277 101 327 2.27e-35 133
Msa1341390 AT4G22770.2 42.132 197 98 4 64 244 70 266 2.39e-33 126
Msa1341390 AT4G22770.1 42.132 197 98 4 64 244 70 266 2.39e-33 126
Msa1341390 AT3G61310.1 42.781 187 94 3 65 244 100 280 4.76e-33 126
Msa1341390 AT1G63470.1 41.117 197 91 6 65 244 104 292 1.53e-32 125
Msa1341390 AT4G00200.2 52.033 123 56 1 131 250 123 245 5.88e-29 114
Msa1341390 AT4G00200.1 52.033 123 56 1 131 250 123 245 5.88e-29 114
Msa1341390 AT3G60870.1 32.090 134 89 1 110 243 65 196 2.75e-19 86.7
Msa1341390 AT4G14465.1 37.313 134 83 1 111 243 73 206 9.46e-18 82.8
Msa1341390 AT1G76500.1 33.803 142 77 2 111 243 87 220 1.17e-17 82.8
Msa1341390 AT3G04570.1 35.461 141 75 2 111 243 95 227 3.19e-16 79.0
Msa1341390 AT3G55560.1 36.220 127 80 1 118 243 102 228 1.96e-15 76.6
Msa1341390 AT4G12050.1 33.858 127 83 1 118 243 132 258 5.98e-15 75.5
Msa1341390 AT1G14490.2 31.667 120 75 2 131 243 49 168 9.77e-15 73.2
Msa1341390 AT4G22810.1 33.600 125 80 1 122 243 123 247 1.14e-14 74.3
Msa1341390 AT1G14490.1 31.933 119 74 2 132 243 31 149 1.57e-14 72.0
Msa1341390 AT4G17800.1 33.083 133 81 1 111 243 97 221 7.44e-14 71.6
Msa1341390 AT4G35390.1 34.074 135 79 2 111 243 78 204 8.93e-14 71.6
Msa1341390 AT5G49700.1 27.711 249 120 6 2 243 7 202 1.16e-13 70.9
Msa1341390 AT2G36560.1 30.556 144 92 5 107 244 82 223 1.90e-13 72.0
Msa1341390 AT2G35270.1 32.331 133 82 1 111 243 93 217 2.21e-13 70.1
Msa1341390 AT2G42940.1 35.965 114 73 0 131 244 80 193 2.88e-13 69.3

Find 148 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATATTATTTCGCTTAC+TGG 0.134288 tig0004828:+122966 Msa1341390:CDS
GAACTGGACCAGCAGCTTTA+AGG 0.151788 tig0004828:-123088 None:intergenic
TGCAATTTATGCAACAAAAT+AGG 0.176992 tig0004828:+122002 Msa1341390:CDS
GCAATTTATGCAACAAAATA+GGG 0.199709 tig0004828:+122003 Msa1341390:CDS
AAATCTCATTCTCTCTTTCT+AGG 0.208145 tig0004828:+120515 Msa1341390:CDS
CAAATTCTCAATCAGGAATT+TGG 0.241504 tig0004828:-123967 None:intergenic
CGGATGGCGCATACTATAAA+TGG 0.259174 tig0004828:-124076 None:intergenic
CTCCGTCAACCAGCATCTTC+AGG 0.315212 tig0004828:+122073 Msa1341390:CDS
GGTGGAAGAAAGAGCTTAAT+TGG 0.350801 tig0004828:-120181 None:intergenic
TTAGCAGCTAGGGCTTGTTC+AGG 0.361515 tig0004828:-120395 None:intergenic
GAGAGAATGAGATTTCTTAG+AGG 0.362002 tig0004828:-120507 None:intergenic
TACCTTATTTATCATGGTAT+AGG 0.366696 tig0004828:-124247 None:intergenic
AGAGCTTAATTGGTTGTCAT+TGG 0.370721 tig0004828:-120171 None:intergenic
TACCTATACCATGATAAATA+AGG 0.371169 tig0004828:+124245 Msa1341390:three_prime_UTR
TATATTTCCCTTCCGTTTCA+AGG 0.373603 tig0004828:+124308 Msa1341390:three_prime_UTR
GTTGCTGGTGTTGTTGTTGT+TGG 0.374911 tig0004828:-120214 None:intergenic
AGAGGTAGACCTAGAAAATA+TGG 0.378143 tig0004828:+120368 Msa1341390:CDS
CTCATTATTGCAGGAAGAAC+AGG 0.378894 tig0004828:+123905 Msa1341390:intron
TGCTTCCTAGCTTAGCTTGT+GGG 0.379329 tig0004828:+124284 Msa1341390:three_prime_UTR
AACTGGACCAGCAGCTTTAA+GGG 0.379611 tig0004828:-123087 None:intergenic
CCTTCTAAGATTACCTGAAC+TGG 0.384145 tig0004828:-123104 None:intergenic
TAACCAGCATGTCTTGAATC+TGG 0.387032 tig0004828:-123796 None:intergenic
CGCTGGAAGAGTCGACTGTT+TGG 0.391063 tig0004828:-123660 None:intergenic
CTACCTCTCTTCCTCTTAGC+TGG 0.391774 tig0004828:-120353 None:intergenic
GGCGAGCCAGCATCAAGTTT+AGG 0.392871 tig0004828:+123631 Msa1341390:CDS
TAAAGCTGCTGGTCCAGTTC+AGG 0.403368 tig0004828:+123091 Msa1341390:CDS
TGTTCATCATTTCCTCGGAT+TGG 0.407349 tig0004828:-123688 None:intergenic
GCCATCTCAAATTCTCAATC+AGG 0.415987 tig0004828:-123974 None:intergenic
GACACTAGTGCTGGTGGAAA+AGG 0.420179 tig0004828:+123574 Msa1341390:CDS
CATGTCATTGCTGTTGCTGC+TGG 0.421863 tig0004828:+120765 Msa1341390:CDS
CTTGATGCTGGCTCGCCAAC+TGG 0.422763 tig0004828:-123625 None:intergenic
TTCGCCCTCCGGTTTCATTA+CGG 0.428138 tig0004828:-122998 None:intergenic
GTTGTTGGTGGTTGTGGTGG+TGG 0.428283 tig0004828:-120199 None:intergenic
TAAATATACCTTATTTATCA+TGG 0.429893 tig0004828:-124253 None:intergenic
GTTGTTGTTGTTGGTGGTTG+TGG 0.436641 tig0004828:-120205 None:intergenic
GGTGGGCCCCTTAAAGCTGC+TGG 0.437762 tig0004828:+123080 Msa1341390:CDS
TCCTATGTCCGTAATGAAAC+CGG 0.439359 tig0004828:+122990 Msa1341390:CDS
CAAGTTGTTGAATCATGTAA+TGG 0.441011 tig0004828:-123729 None:intergenic
GTCAGAAGCCACGACCTTAA+CGG 0.450596 tig0004828:-124096 None:intergenic
TGGGGTGATGCAGGCAATGC+AGG 0.457106 tig0004828:+120726 Msa1341390:intron
ATGTGGGACCCATCCGTGTT+TGG 0.457507 tig0004828:-120281 None:intergenic
GCTGGTGTTGTTGTTGTTGG+TGG 0.458412 tig0004828:-120211 None:intergenic
ATAGTATGCGCCATCCGTTA+AGG 0.460483 tig0004828:+124082 Msa1341390:three_prime_UTR
AATTCTGATGGACAAATCAT+AGG 0.463502 tig0004828:+123047 Msa1341390:CDS
TGGTCATAGCCTCCATTCTC+GGG 0.466277 tig0004828:-123947 None:intergenic
GGTTCGATGGCACCAATGTC+TGG 0.467018 tig0004828:+124002 Msa1341390:three_prime_UTR
GAGAATTTGAGATGGCTTGT+GGG 0.469001 tig0004828:+123981 Msa1341390:exon
TCTCACCAGTCTCCCGAGAA+TGG 0.469905 tig0004828:+123935 Msa1341390:CDS
AGCCTCCATTCTCGGGAGAC+TGG 0.470077 tig0004828:-123940 None:intergenic
ATCATAGGTGGTGGTGTTGG+TGG 0.470575 tig0004828:+123062 Msa1341390:CDS
TTCTTAGAGGTGAAAGAAGG+AGG 0.470890 tig0004828:-120494 None:intergenic
TGTAAGAAGTGTAGCTTGGA+TGG 0.471489 tig0004828:-120005 None:intergenic
TATGCATTCAATAGGATGTT+GGG 0.475179 tig0004828:+121969 Msa1341390:intron
TTGGTCATAGCCTCCATTCT+CGG 0.475797 tig0004828:-123948 None:intergenic
ATTCTTGTTGTTATCAAGAG+TGG 0.478438 tig0004828:-120453 None:intergenic
TGACTTGATTTGTGCTGCCA+CGG 0.478635 tig0004828:-120136 None:intergenic
GCGGAAGAAGCCACTGAATG+AGG 0.479604 tig0004828:-120311 None:intergenic
CATTACATGATTCAACAACT+TGG 0.485575 tig0004828:+123730 Msa1341390:CDS
GATTTCTTAGAGGTGAAAGA+AGG 0.487496 tig0004828:-120497 None:intergenic
CTTGATGTTCATCATTTCCT+CGG 0.490079 tig0004828:-123693 None:intergenic
TTAGAGGTGAAAGAAGGAGG+AGG 0.495629 tig0004828:-120491 None:intergenic
CTCCTGAAGATGCTGGTTGA+CGG 0.496465 tig0004828:-122075 None:intergenic
ATATGCATTATGTCTGCATC+TGG 0.497917 tig0004828:+122031 Msa1341390:CDS
GCTGGCTCGCCAACTGGTGA+TGG 0.498545 tig0004828:-123619 None:intergenic
ACCTCCCAGGTCTACAGAGT+GGG 0.499164 tig0004828:+123765 Msa1341390:CDS
AAATGATGAACATCAAGCTA+TGG 0.500826 tig0004828:+123699 Msa1341390:CDS
CTCAGCTTGAACCAGCTAAG+AGG 0.502476 tig0004828:+120342 Msa1341390:CDS
AAGACCACCACTTCGCCCTC+CGG 0.503832 tig0004828:-123009 None:intergenic
TTATCAAGAGTGGGTGGAGT+GGG 0.504060 tig0004828:-120443 None:intergenic
CTGAATGAGGGTAAAGTATG+TGG 0.508435 tig0004828:-120298 None:intergenic
TTCTTGTTGTTATCAAGAGT+GGG 0.510115 tig0004828:-120452 None:intergenic
TGCGCCATCCGTTAAGGTCG+TGG 0.515945 tig0004828:+124088 Msa1341390:three_prime_UTR
AGGAGGCAACATTATGTATG+AGG 0.516281 tig0004828:+122093 Msa1341390:CDS
AAATACATCACAAGTAAATG+AGG 0.517819 tig0004828:-124165 None:intergenic
ATCTTGTAAGAAGTGTAGCT+TGG 0.519210 tig0004828:-120009 None:intergenic
GTTGTTGTTGGTGGTTGTGG+TGG 0.524710 tig0004828:-120202 None:intergenic
GTATGCTTGTCTAATTCTGA+TGG 0.531450 tig0004828:+123035 Msa1341390:CDS
GTTTGCACGTGACACCTCCC+AGG 0.535717 tig0004828:+123752 Msa1341390:CDS
TCCGGTTTCATTACGGACAT+AGG 0.536430 tig0004828:-122991 None:intergenic
GTATGCATTCAATAGGATGT+TGG 0.536594 tig0004828:+121968 Msa1341390:intron
GTTCGTCGGAGATGCGGTGG+TGG 0.542289 tig0004828:-120249 None:intergenic
CACTGGACTTCATACCTGAC+AGG 0.545872 tig0004828:-123822 None:intergenic
TCATAGGTGGTGGTGTTGGT+GGG 0.546536 tig0004828:+123063 Msa1341390:CDS
CATCCAGATTCAAGACATGC+TGG 0.548607 tig0004828:+123793 Msa1341390:CDS
CAAATCATAGGTGGTGGTGT+TGG 0.550092 tig0004828:+123059 Msa1341390:CDS
ATGGAGCAAGCACCTTGAAA+CGG 0.550654 tig0004828:-124320 None:intergenic
CATACTTTACCCTCATTCAG+TGG 0.553520 tig0004828:+120301 Msa1341390:CDS
ACCGTTCGTCGGAGATGCGG+TGG 0.555343 tig0004828:-120252 None:intergenic
CATGCTGGTTATGACCTGTC+AGG 0.555450 tig0004828:+123808 Msa1341390:CDS
CATTGCTGTTGCTGCTGGTG+AGG 0.555993 tig0004828:+120770 Msa1341390:CDS
AGCAAGCACCTTGAAACGGA+AGG 0.556073 tig0004828:-124316 None:intergenic
TATAGCCCACAAGCTAAGCT+AGG 0.556445 tig0004828:-124289 None:intergenic
ATGCTTCCTAGCTTAGCTTG+TGG 0.556684 tig0004828:+124283 Msa1341390:three_prime_UTR
TGAGAATTTGAGATGGCTTG+TGG 0.563343 tig0004828:+123980 Msa1341390:exon
GTAAGAAGTGTAGCTTGGAT+GGG 0.563774 tig0004828:-120004 None:intergenic
TCCTCGGATTGGATTCCCGC+TGG 0.565035 tig0004828:-123677 None:intergenic
ATTGCAGGAAGAACAGGTCA+TGG 0.575958 tig0004828:+123911 Msa1341390:intron
ACGGAGAGAGGCATTAGAGA+TGG 0.577094 tig0004828:-122056 None:intergenic
CACCTCGTGACAAAGACTGC+TGG 0.581481 tig0004828:-124053 None:intergenic
AATGATGAACATCAAGCTAT+GGG 0.582749 tig0004828:+123700 Msa1341390:CDS
GGAAAAGGTGATCCCTCTGC+TGG 0.584167 tig0004828:+123589 Msa1341390:CDS
TCCTGATTGAGAATTTGAGA+TGG 0.587653 tig0004828:+123973 Msa1341390:exon
AACAAGAAGGACACTAGTGC+TGG 0.587899 tig0004828:+123565 Msa1341390:CDS
TGGAAGAGTCGACTGTTTGG+TGG 0.588873 tig0004828:-123657 None:intergenic
GAGATGGCTTGTGGGTTCGA+TGG 0.589349 tig0004828:+123989 Msa1341390:three_prime_UTR
TAATCCCTACAGGTCATTGT+CGG 0.592613 tig0004828:+123526 Msa1341390:intron
GAACCAGCTAAGAGGAAGAG+AGG 0.597787 tig0004828:+120350 Msa1341390:CDS
TTGTTGTTATCAAGAGTGGG+TGG 0.598399 tig0004828:-120449 None:intergenic
CGGAAGAAGCCACTGAATGA+GGG 0.600082 tig0004828:-120310 None:intergenic
TGGAAACCTAAACTTGATGC+TGG 0.602657 tig0004828:-123637 None:intergenic
GAAACCGGAGGGCGAAGTGG+TGG 0.603275 tig0004828:+123005 Msa1341390:CDS
CAATTTATGCAACAAAATAG+GGG 0.604932 tig0004828:+122004 Msa1341390:CDS
AAGAAGGACACTAGTGCTGG+TGG 0.607696 tig0004828:+123568 Msa1341390:CDS
AGATGCTGGTTGACGGAGAG+AGG 0.610130 tig0004828:-122068 None:intergenic
TTTGGTAAAAGACCGTTCGT+CGG 0.610276 tig0004828:-120263 None:intergenic
GATGCAGGCAATGCAGGACA+AGG 0.611195 tig0004828:+120732 Msa1341390:intron
AAGACCGTTCGTCGGAGATG+CGG 0.611771 tig0004828:-120255 None:intergenic
TACAACTGTTAACCAGACAT+TGG 0.620305 tig0004828:-124014 None:intergenic
TTGCAGGAAGAACAGGTCAT+GGG 0.620825 tig0004828:+123912 Msa1341390:intron
CAAAGACTGCTGGTATGTAG+TGG 0.621373 tig0004828:-124043 None:intergenic
AATGAAACCGGAGGGCGAAG+TGG 0.622641 tig0004828:+123002 Msa1341390:CDS
AAACAGTCGACTCTTCCAGC+GGG 0.624900 tig0004828:+123662 Msa1341390:CDS
GATGAACATCAAGCTATGGG+TGG 0.627293 tig0004828:+123703 Msa1341390:CDS
GTTATCAAGAGTGGGTGGAG+TGG 0.627711 tig0004828:-120444 None:intergenic
CACCTCCCAGGTCTACAGAG+TGG 0.633953 tig0004828:+123764 Msa1341390:CDS
ACCACCGCATCTCCGACGAA+CGG 0.636034 tig0004828:+120251 Msa1341390:CDS
GCAAGCACCTTGAAACGGAA+GGG 0.638256 tig0004828:-124315 None:intergenic
ATGTTGCCTCCTGAAGATGC+TGG 0.639283 tig0004828:-122082 None:intergenic
TGAATGAGGGTAAAGTATGT+GGG 0.641240 tig0004828:-120297 None:intergenic
TGATGGCAACTTACCAGCAG+AGG 0.643200 tig0004828:-123602 None:intergenic
GGTAAGTTGCCATCACCAGT+TGG 0.643376 tig0004828:+123610 Msa1341390:CDS
ACTGGACCAGCAGCTTTAAG+GGG 0.646372 tig0004828:-123086 None:intergenic
GATGGCAACTTACCAGCAGA+GGG 0.646608 tig0004828:-123601 None:intergenic
CACCAGTCTCCCGAGAATGG+AGG 0.648200 tig0004828:+123938 Msa1341390:CDS
CCTCCCAGGTCTACAGAGTG+GGG 0.652955 tig0004828:+123766 Msa1341390:CDS
GAAGCCACGACCTTAACGGA+TGG 0.655831 tig0004828:-124092 None:intergenic
TCTGATGGACAAATCATAGG+TGG 0.664275 tig0004828:+123050 Msa1341390:CDS
TCCAGCGGGAATCCAATCCG+AGG 0.670950 tig0004828:+123676 Msa1341390:CDS
GATGGACAAATCATAGGTGG+TGG 0.676431 tig0004828:+123053 Msa1341390:CDS
ATGTCCGTAATGAAACCGGA+GGG 0.676572 tig0004828:+122994 Msa1341390:CDS
CGTCAACCAGCATCTTCAGG+AGG 0.676685 tig0004828:+122076 Msa1341390:CDS
TATGTCCGTAATGAAACCGG+AGG 0.677990 tig0004828:+122993 Msa1341390:CDS
CTCCCAGGTCTACAGAGTGG+GGG 0.684142 tig0004828:+123767 Msa1341390:CDS
TCACAGTATTGAGACTTGTG+AGG 0.689854 tig0004828:+119979 Msa1341390:five_prime_UTR
CAAACAGTCGACTCTTCCAG+CGG 0.690163 tig0004828:+123661 Msa1341390:CDS
TACCAGCAGTCTTTGTCACG+AGG 0.704449 tig0004828:+124051 Msa1341390:three_prime_UTR
CCCCACTCTGTAGACCTGGG+AGG 0.709027 tig0004828:-123766 None:intergenic
TTCAAGCTGAGAAGAAACAG+CGG 0.720213 tig0004828:-120330 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATAATCTTAAACAAAA+TGG - tig0004828:120951-120970 None:intergenic 10.0%
!!! AAATTATATTTGTTTTTCAA+TGG - tig0004828:121351-121370 None:intergenic 10.0%
!! AAATTCAAAGTAATATAAAT+AGG - tig0004828:122287-122306 None:intergenic 10.0%
!! AAGAGAAAAATAAAAAAATA+TGG - tig0004828:122528-122547 None:intergenic 10.0%
!! TGTTATAAATATAGATATTT+CGG + tig0004828:123401-123420 Msa1341390:intron 10.0%
!!! CTTAATTTTATTTAGTTTGA+TGG + tig0004828:120694-120713 Msa1341390:intron 15.0%
!! TGCTTGTTTATTATTATAAA+AGG + tig0004828:121122-121141 Msa1341390:intron 15.0%
!!! TTTTAACAAACTTAAACAAA+CGG + tig0004828:121296-121315 Msa1341390:intron 15.0%
!! AAAAATAAAAAAATATGGAC+GGG - tig0004828:122523-122542 None:intergenic 15.0%
!! GAAAAATAAAAAAATATGGA+CGG - tig0004828:122524-122543 None:intergenic 15.0%
!!! GTTGATCTTTTTAATTTTTT+AGG + tig0004828:122870-122889 Msa1341390:intron 15.0%
!! ATTAATCAAAAATAACTTCT+TGG - tig0004828:123503-123522 None:intergenic 15.0%
!! GATGTATTTAAAAATTAGAA+TGG + tig0004828:124179-124198 Msa1341390:three_prime_UTR 15.0%
!!! TAAATATACCTTATTTATCA+TGG - tig0004828:124256-124275 None:intergenic 15.0%
!! TGATTGATTATCATAATTCA+AGG + tig0004828:120655-120674 Msa1341390:intron 20.0%
!!! TTTATTTAGTTTGATGGTTA+TGG + tig0004828:120700-120719 Msa1341390:intron 20.0%
!! TTTAACAAACTTAAACAAAC+GGG + tig0004828:121297-121316 Msa1341390:intron 20.0%
!! TTGGAGAAATAATCAATTAT+TGG + tig0004828:121389-121408 Msa1341390:intron 20.0%
!!! TTTTTAAGATGCTAATTTCT+TGG + tig0004828:121562-121581 Msa1341390:intron 20.0%
!! TAAAATGTAAAGATAAACCT+TGG - tig0004828:122383-122402 None:intergenic 20.0%
!! AAAATAAAAAAATATGGACG+GGG - tig0004828:122522-122541 None:intergenic 20.0%
!! GAAATATTCTTATAAGAAGT+GGG - tig0004828:122703-122722 None:intergenic 20.0%
!! AGAAATATTCTTATAAGAAG+TGG - tig0004828:122704-122723 None:intergenic 20.0%
!! AAATTGTGTCTATATTAGAT+TGG + tig0004828:122759-122778 Msa1341390:intron 20.0%
!!! AATTTTTTAGGTGTATGATT+TGG + tig0004828:122882-122901 Msa1341390:intron 20.0%
!! TATTTAAAAATTAGAATGGC+TGG + tig0004828:124183-124202 Msa1341390:three_prime_UTR 20.0%
! CACAAATCAAGTCAAAAAAA+TGG + tig0004828:120145-120164 Msa1341390:exon 25.0%
! TGATTCTTTCTCTAATTTCT+AGG + tig0004828:120540-120559 Msa1341390:intron 25.0%
! GATTCTTTCTCTAATTTCTA+GGG + tig0004828:120541-120560 Msa1341390:intron 25.0%
! CACTTAATCATGAATTGATT+TGG + tig0004828:120581-120600 Msa1341390:intron 25.0%
! ATTGCTCAAGTTAATGTATT+TGG + tig0004828:120918-120937 Msa1341390:intron 25.0%
! TTGCTCAAGTTAATGTATTT+GGG + tig0004828:120919-120938 Msa1341390:intron 25.0%
!! AAGTTAATGTATTTGGGTTT+GGG + tig0004828:120925-120944 Msa1341390:intron 25.0%
!!! AAAGCTATTTTGATTAGCTT+TGG - tig0004828:121179-121198 None:intergenic 25.0%
! ATTTCTCCAAATCTAATCAA+GGG - tig0004828:121379-121398 None:intergenic 25.0%
! TATTTCTCCAAATCTAATCA+AGG - tig0004828:121380-121399 None:intergenic 25.0%
!! AGACAATAGCATTTTTCATA+TGG + tig0004828:121530-121549 Msa1341390:intron 25.0%
!! ATCCAAGAATAATGCTTTTA+GGG + tig0004828:121641-121660 Msa1341390:intron 25.0%
! TTTAAGCAAAATATGCTTGT+AGG + tig0004828:121758-121777 Msa1341390:intron 25.0%
! ATTAAGATCCTAAAACATCT+TGG - tig0004828:121829-121848 None:intergenic 25.0%
! TGAAAACCAAATTGGATAAA+TGG - tig0004828:121912-121931 None:intergenic 25.0%
! GAAAAAGATGAAAACCAAAT+TGG - tig0004828:121920-121939 None:intergenic 25.0%
! TATTTGAGTATGCATTCAAT+AGG + tig0004828:121961-121980 Msa1341390:intron 25.0%
! TGCAATTTATGCAACAAAAT+AGG + tig0004828:122002-122021 Msa1341390:CDS 25.0%
! GCAATTTATGCAACAAAATA+GGG + tig0004828:122003-122022 Msa1341390:CDS 25.0%
! CAATTTATGCAACAAAATAG+GGG + tig0004828:122004-122023 Msa1341390:CDS 25.0%
! TGAAGATTGTTTGAAGAATA+GGG - tig0004828:122187-122206 None:intergenic 25.0%
! TTGAAGATTGTTTGAAGAAT+AGG - tig0004828:122188-122207 None:intergenic 25.0%
! TTCTTCAAACAATCTTCAAA+AGG + tig0004828:122189-122208 Msa1341390:intron 25.0%
! AAACAATCTTCAAAAGGAAA+CGG + tig0004828:122195-122214 Msa1341390:intron 25.0%
!! TTATCTTTACATTTTACCCA+TGG + tig0004828:122387-122406 Msa1341390:intron 25.0%
!! CTAACCAAAAAAACTTTTTG+TGG + tig0004828:122631-122650 Msa1341390:intron 25.0%
!!! TTGACCACAAAAAGTTTTTT+TGG - tig0004828:122638-122657 None:intergenic 25.0%
! TTAATAAAAACACTGTACTG+CGG + tig0004828:122838-122857 Msa1341390:intron 25.0%
! TTCTTTAATGCTTTGATATC+AGG + tig0004828:122938-122957 Msa1341390:intron 25.0%
! TCTTTAATGCTTTGATATCA+GGG + tig0004828:122939-122958 Msa1341390:intron 25.0%
! TTTGATATTATTTCGCTTAC+TGG + tig0004828:122966-122985 Msa1341390:CDS 25.0%
! TGTGAATGTAATTCATTATC+AGG - tig0004828:123480-123499 None:intergenic 25.0%
!!! ATTTTTTATGGACAACAAGA+AGG + tig0004828:123552-123571 Msa1341390:CDS 25.0%
! TTATACCATAAGAAAATCAG+TGG - tig0004828:123866-123885 None:intergenic 25.0%
!! AGGCAAAACAATATTTTTCA+AGG - tig0004828:124148-124167 None:intergenic 25.0%
! AAATACATCACAAGTAAATG+AGG - tig0004828:124168-124187 None:intergenic 25.0%
! TACCTATACCATGATAAATA+AGG + tig0004828:124245-124264 Msa1341390:three_prime_UTR 25.0%
!! TACCTTATTTATCATGGTAT+AGG - tig0004828:124250-124269 None:intergenic 25.0%
!! TTCTTGTTGTTATCAAGAGT+GGG - tig0004828:120455-120474 None:intergenic 30.0%
!! ATTCTTGTTGTTATCAAGAG+TGG - tig0004828:120456-120475 None:intergenic 30.0%
AAATCTCATTCTCTCTTTCT+AGG + tig0004828:120515-120534 Msa1341390:CDS 30.0%
! TAGTTTGATGGTTATGGTAA+TGG + tig0004828:120706-120725 Msa1341390:intron 30.0%
! AGTTTGATGGTTATGGTAAT+GGG + tig0004828:120707-120726 Msa1341390:intron 30.0%
! TGATTTTGAATTTCTGCATC+TGG + tig0004828:120836-120855 Msa1341390:intron 30.0%
! CAAGTTAATGTATTTGGGTT+TGG + tig0004828:120924-120943 Msa1341390:intron 30.0%
! AGATTTTGAATTTCCCTCTA+TGG + tig0004828:121145-121164 Msa1341390:intron 30.0%
! GATTTTGAATTTCCCTCTAT+GGG + tig0004828:121146-121165 Msa1341390:intron 30.0%
TTTCTTCCCTTGATTAGATT+TGG + tig0004828:121370-121389 Msa1341390:intron 30.0%
GGATATACGTAGTAAATAAG+AGG - tig0004828:121417-121436 None:intergenic 30.0%
!! CCATCAACTTATTTTCACTA+AGG - tig0004828:121598-121617 None:intergenic 30.0%
! CCTTAGTGAAAATAAGTTGA+TGG + tig0004828:121595-121614 Msa1341390:intron 30.0%
! GATCCAAGAATAATGCTTTT+AGG + tig0004828:121640-121659 Msa1341390:intron 30.0%
! TCCAAGAATAATGCTTTTAG+GGG + tig0004828:121642-121661 Msa1341390:intron 30.0%
!!! TTTTTGAGTGATGCTGTTAT+AGG - tig0004828:121704-121723 None:intergenic 30.0%
! TGTTTGCCATTTATCCAATT+TGG + tig0004828:121903-121922 Msa1341390:intron 30.0%
TATGCATTCAATAGGATGTT+GGG + tig0004828:121969-121988 Msa1341390:intron 30.0%
ATAAATAGGAATATGAGCCT+TGG - tig0004828:122273-122292 None:intergenic 30.0%
TACTTGTGTTAAAGAAACCA+AGG + tig0004828:122363-122382 Msa1341390:intron 30.0%
TAGCATATTCAATCAACATG+TGG - tig0004828:122438-122457 None:intergenic 30.0%
! AAACTTTTTGTGGTCAAATC+TGG + tig0004828:122641-122660 Msa1341390:intron 30.0%
! AGAATATTTCTACCTTCAAG+AGG + tig0004828:122713-122732 Msa1341390:intron 30.0%
! AATTCTGATGGACAAATCAT+AGG + tig0004828:123047-123066 Msa1341390:CDS 30.0%
TTTACCTTGTGAATATTGAG+CGG + tig0004828:123179-123198 Msa1341390:intron 30.0%
ACAGAAACTACAAAAGAAAC+AGG - tig0004828:123222-123241 None:intergenic 30.0%
! TTTCTGTTATAGCCTTTTTC+TGG + tig0004828:123235-123254 Msa1341390:intron 30.0%
!!! TTTTTTGTTCTGCCAGAAAA+AGG - tig0004828:123250-123269 None:intergenic 30.0%
TAACTATGTAGTGAAATCAG+TGG + tig0004828:123345-123364 Msa1341390:intron 30.0%
GAATGTAATTCATTATCAGG+TGG - tig0004828:123477-123496 None:intergenic 30.0%
GATTAATAGTTAATCCCTAC+AGG + tig0004828:123516-123535 Msa1341390:intron 30.0%
!!! CATTGTCGGTACATTTTTTA+TGG + tig0004828:123540-123559 Msa1341390:CDS 30.0%
AAATGATGAACATCAAGCTA+TGG + tig0004828:123699-123718 Msa1341390:CDS 30.0%
AATGATGAACATCAAGCTAT+GGG + tig0004828:123700-123719 Msa1341390:CDS 30.0%
CAAGTTGTTGAATCATGTAA+TGG - tig0004828:123732-123751 None:intergenic 30.0%
CATTACATGATTCAACAACT+TGG + tig0004828:123730-123749 Msa1341390:CDS 30.0%
CAAATTCTCAATCAGGAATT+TGG - tig0004828:123970-123989 None:intergenic 30.0%
!! TAATGCCTCTTCATTTTTGT+GGG + tig0004828:124213-124232 Msa1341390:three_prime_UTR 30.0%
! ATCTTGTAAGAAGTGTAGCT+TGG - tig0004828:120012-120031 None:intergenic 35.0%
AGAGCTTAATTGGTTGTCAT+TGG - tig0004828:120174-120193 None:intergenic 35.0%
TGAATGAGGGTAAAGTATGT+GGG - tig0004828:120300-120319 None:intergenic 35.0%
AGAGGTAGACCTAGAAAATA+TGG + tig0004828:120368-120387 Msa1341390:CDS 35.0%
!!! TCAGGAGTACCATATTTTCT+AGG - tig0004828:120380-120399 None:intergenic 35.0%
!!! AGAAGCTTTTTTAGCAGCTA+GGG - tig0004828:120408-120427 None:intergenic 35.0%
!!! TAGAAGCTTTTTTAGCAGCT+AGG - tig0004828:120409-120428 None:intergenic 35.0%
GATTTCTTAGAGGTGAAAGA+AGG - tig0004828:120500-120519 None:intergenic 35.0%
GAGAGAATGAGATTTCTTAG+AGG - tig0004828:120510-120529 None:intergenic 35.0%
! GTTTGATGGTTATGGTAATG+GGG + tig0004828:120708-120727 Msa1341390:intron 35.0%
TTTGGAAGAAAACCCATAGA+GGG - tig0004828:121161-121180 None:intergenic 35.0%
GCTATTGTCTCAATGAGAAA+TGG - tig0004828:121520-121539 None:intergenic 35.0%
!! TCCCCTAAAAGCATTATTCT+TGG - tig0004828:121646-121665 None:intergenic 35.0%
! TGTGAATTTTCCTGCATCAA+CGG + tig0004828:121865-121884 Msa1341390:intron 35.0%
GTATGCATTCAATAGGATGT+TGG + tig0004828:121968-121987 Msa1341390:intron 35.0%
ATATGCATTATGTCTGCATC+TGG + tig0004828:122031-122050 Msa1341390:CDS 35.0%
GTTGAGTGTTATCATAACCA+AGG + tig0004828:122253-122272 Msa1341390:intron 35.0%
! TTTTCTCTTGTCGTAGAATC+AGG + tig0004828:122326-122345 Msa1341390:intron 35.0%
CAGTGGTAATAATGGCTTAT+GGG + tig0004828:122803-122822 Msa1341390:intron 35.0%
TAATGCTTTGATATCAGGGT+CGG + tig0004828:122943-122962 Msa1341390:intron 35.0%
GTATGCTTGTCTAATTCTGA+TGG + tig0004828:123035-123054 Msa1341390:CDS 35.0%
GGAACTGCAAATGAATTTGT+AGG + tig0004828:123125-123144 Msa1341390:intron 35.0%
CTGCAAATGAATTTGTAGGT+TGG + tig0004828:123129-123148 Msa1341390:intron 35.0%
GTAAAACAAATGCAAGACAG+CGG - tig0004828:123164-123183 None:intergenic 35.0%
! AAATCGACTTCTGCCAAAAA+AGG + tig0004828:123291-123310 Msa1341390:intron 35.0%
! AATCGACTTCTGCCAAAAAA+GGG + tig0004828:123292-123311 Msa1341390:intron 35.0%
AAATCAGTGGAATGAAAAGC+AGG + tig0004828:123358-123377 Msa1341390:intron 35.0%
AATCAGTGGAATGAAAAGCA+GGG + tig0004828:123359-123378 Msa1341390:intron 35.0%
CTTGATGTTCATCATTTCCT+CGG - tig0004828:123696-123715 None:intergenic 35.0%
ATAAGAAAATCAGTGGAGGA+TGG - tig0004828:123859-123878 None:intergenic 35.0%
!!! ATCCTCCACTGATTTTCTTA+TGG + tig0004828:123858-123877 Msa1341390:intron 35.0%
TACCATAAGAAAATCAGTGG+AGG - tig0004828:123863-123882 None:intergenic 35.0%
TCCTGATTGAGAATTTGAGA+TGG + tig0004828:123973-123992 Msa1341390:exon 35.0%
TACAACTGTTAACCAGACAT+TGG - tig0004828:124017-124036 None:intergenic 35.0%
!! CTAATGCCTCTTCATTTTTG+TGG + tig0004828:124212-124231 Msa1341390:three_prime_UTR 35.0%
TATATTTCCCTTCCGTTTCA+AGG + tig0004828:124308-124327 Msa1341390:three_prime_UTR 35.0%
! TCACAGTATTGAGACTTGTG+AGG + tig0004828:119979-119998 Msa1341390:five_prime_UTR 40.0%
! GTAAGAAGTGTAGCTTGGAT+GGG - tig0004828:120007-120026 None:intergenic 40.0%
! TGTAAGAAGTGTAGCTTGGA+TGG - tig0004828:120008-120027 None:intergenic 40.0%
GGTGGAAGAAAGAGCTTAAT+TGG - tig0004828:120184-120203 None:intergenic 40.0%
TTTGGTAAAAGACCGTTCGT+CGG - tig0004828:120266-120285 None:intergenic 40.0%
! GAACGGTCTTTTACCAAACA+CGG + tig0004828:120268-120287 Msa1341390:CDS 40.0%
! GTCTTTTACCAAACACGGAT+GGG + tig0004828:120273-120292 Msa1341390:CDS 40.0%
CTGAATGAGGGTAAAGTATG+TGG - tig0004828:120301-120320 None:intergenic 40.0%
CATACTTTACCCTCATTCAG+TGG + tig0004828:120301-120320 Msa1341390:CDS 40.0%
TTCAAGCTGAGAAGAAACAG+CGG - tig0004828:120333-120352 None:intergenic 40.0%
! TTGTTGTTATCAAGAGTGGG+TGG - tig0004828:120452-120471 None:intergenic 40.0%
TTCTTAGAGGTGAAAGAAGG+AGG - tig0004828:120497-120516 None:intergenic 40.0%
! CTTTGGAAGAAAACCCATAG+AGG - tig0004828:121162-121181 None:intergenic 40.0%
AATAAGTGCCAAAACAACCG+TGG - tig0004828:121447-121466 None:intergenic 40.0%
TTAGTCCTAGACGAGATATC+AGG + tig0004828:121465-121484 Msa1341390:intron 40.0%
TGAGAAATGGCTGAGCATAT+CGG - tig0004828:121507-121526 None:intergenic 40.0%
TGGCGAACTTAAAGGAGAAA+GGG - tig0004828:121802-121821 None:intergenic 40.0%
AGATCCTAAAACATCTTGGC+TGG - tig0004828:121825-121844 None:intergenic 40.0%
AGGAGGCAACATTATGTATG+AGG + tig0004828:122093-122112 Msa1341390:CDS 40.0%
CTGTTGAAACTTGCAGCATA+TGG + tig0004828:122220-122239 Msa1341390:intron 40.0%
TACCCATGGTGTTCCAAAAA+AGG + tig0004828:122401-122420 Msa1341390:intron 40.0%
!!! TGCCTTTTTTGGAACACCAT+GGG - tig0004828:122406-122425 None:intergenic 40.0%
TTTGTGGTCAAATCTGGATG+TGG + tig0004828:122647-122666 Msa1341390:intron 40.0%
TCAAATCTGGATGTGGATGT+TGG + tig0004828:122654-122673 Msa1341390:intron 40.0%
TTAATGTTAGTGCGTAGCAG+TGG + tig0004828:122786-122805 Msa1341390:intron 40.0%
GCAGTGGTAATAATGGCTTA+TGG + tig0004828:122802-122821 Msa1341390:intron 40.0%
TCCTATGTCCGTAATGAAAC+CGG + tig0004828:122990-123009 Msa1341390:CDS 40.0%
! TCTGATGGACAAATCATAGG+TGG + tig0004828:123050-123069 Msa1341390:CDS 40.0%
!! CCTTCTAAGATTACCTGAAC+TGG - tig0004828:123107-123126 None:intergenic 40.0%
CCAGTTCAGGTAATCTTAGA+AGG + tig0004828:123104-123123 Msa1341390:intron 40.0%
AGAACCGCTCAATATTCACA+AGG - tig0004828:123186-123205 None:intergenic 40.0%
! ATCGACTTCTGCCAAAAAAG+GGG + tig0004828:123293-123312 Msa1341390:intron 40.0%
AAAAAAGGGGGAAATGAGGT+GGG + tig0004828:123306-123325 Msa1341390:intron 40.0%
ATTCATTATCAGGTGGTGCT+TGG - tig0004828:123470-123489 None:intergenic 40.0%
TAATCCCTACAGGTCATTGT+CGG + tig0004828:123526-123545 Msa1341390:intron 40.0%
TGGAAACCTAAACTTGATGC+TGG - tig0004828:123640-123659 None:intergenic 40.0%
TGTTCATCATTTCCTCGGAT+TGG - tig0004828:123691-123710 None:intergenic 40.0%
TAACCAGCATGTCTTGAATC+TGG - tig0004828:123799-123818 None:intergenic 40.0%
! GGTATGAAGTCCAGTGATTT+TGG + tig0004828:123829-123848 Msa1341390:intron 40.0%
GGATGGTATACCAAAATCAC+TGG - tig0004828:123842-123861 None:intergenic 40.0%
AGCGAAGTTCTCATTATTGC+AGG + tig0004828:123896-123915 Msa1341390:intron 40.0%
CTCATTATTGCAGGAAGAAC+AGG + tig0004828:123905-123924 Msa1341390:intron 40.0%
GCCATCTCAAATTCTCAATC+AGG - tig0004828:123977-123996 None:intergenic 40.0%
! TGAGAATTTGAGATGGCTTG+TGG + tig0004828:123980-123999 Msa1341390:exon 40.0%
! GAGAATTTGAGATGGCTTGT+GGG + tig0004828:123981-124000 Msa1341390:exon 40.0%
ACAGACCCACAAAAATGAAG+AGG - tig0004828:124221-124240 None:intergenic 40.0%
!! TGACTTGATTTGTGCTGCCA+CGG - tig0004828:120139-120158 None:intergenic 45.0%
!! GTTGTTGTTGTTGGTGGTTG+TGG - tig0004828:120208-120227 None:intergenic 45.0%
!! GTTGCTGGTGTTGTTGTTGT+TGG - tig0004828:120217-120236 None:intergenic 45.0%
!!! TGGAGTTTTGTTGCTGTTGC+TGG - tig0004828:120232-120251 None:intergenic 45.0%
! GGTCTTTTACCAAACACGGA+TGG + tig0004828:120272-120291 Msa1341390:CDS 45.0%
TTATCAAGAGTGGGTGGAGT+GGG - tig0004828:120446-120465 None:intergenic 45.0%
TTAGAGGTGAAAGAAGGAGG+AGG - tig0004828:120494-120513 None:intergenic 45.0%
!! TTATGGTAATGGGGTGATGC+AGG + tig0004828:120717-120736 Msa1341390:intron 45.0%
ACGTATATCCTTAGCCACCA+CGG + tig0004828:121427-121446 Msa1341390:intron 45.0%
CCAAACCTGATATCTCGTCT+AGG - tig0004828:121473-121492 None:intergenic 45.0%
CCTAGACGAGATATCAGGTT+TGG + tig0004828:121470-121489 Msa1341390:intron 45.0%
AGACGAGATATCAGGTTTGG+AGG + tig0004828:121473-121492 Msa1341390:intron 45.0%
GTGGCGAACTTAAAGGAGAA+AGG - tig0004828:121803-121822 None:intergenic 45.0%
TCCTAAAACATCTTGGCTGG+TGG - tig0004828:121822-121841 None:intergenic 45.0%
TAGTCAAACACCGTTGATGC+AGG - tig0004828:121878-121897 None:intergenic 45.0%
!!! GTGCCTTTTTTGGAACACCA+TGG - tig0004828:122407-122426 None:intergenic 45.0%
!!! GGATGCACAAGTGCCTTTTT+TGG - tig0004828:122417-122436 None:intergenic 45.0%
AATCTGGATGTGGATGTTGG+AGG + tig0004828:122657-122676 Msa1341390:intron 45.0%
CTACCTTCAAGAGGACAGAT+AGG + tig0004828:122722-122741 Msa1341390:intron 45.0%
CTTCAAGAGGACAGATAGGA+CGG + tig0004828:122726-122745 Msa1341390:intron 45.0%
GTGCGTAGCAGTGGTAATAA+TGG + tig0004828:122795-122814 Msa1341390:intron 45.0%
TCCGGTTTCATTACGGACAT+AGG - tig0004828:122994-123013 None:intergenic 45.0%
TATGTCCGTAATGAAACCGG+AGG + tig0004828:122993-123012 Msa1341390:CDS 45.0%
ATGTCCGTAATGAAACCGGA+GGG + tig0004828:122994-123013 Msa1341390:CDS 45.0%
GATGGACAAATCATAGGTGG+TGG + tig0004828:123053-123072 Msa1341390:CDS 45.0%
! CAAATCATAGGTGGTGGTGT+TGG + tig0004828:123059-123078 Msa1341390:CDS 45.0%
! AACTGGACCAGCAGCTTTAA+GGG - tig0004828:123090-123109 None:intergenic 45.0%
TCGACTTCTGCCAAAAAAGG+GGG + tig0004828:123294-123313 Msa1341390:intron 45.0%
TGCCAAAAAAGGGGGAAATG+AGG + tig0004828:123302-123321 Msa1341390:intron 45.0%
!!! CACCTCATTTCCCCCTTTTT+TGG - tig0004828:123307-123326 None:intergenic 45.0%
CAAAAAAGGGGGAAATGAGG+TGG + tig0004828:123305-123324 Msa1341390:intron 45.0%
ATTATCAGGTGGTGCTTGGT+AGG - tig0004828:123466-123485 None:intergenic 45.0%
! TGTACCGACAATGACCTGTA+GGG - tig0004828:123533-123552 None:intergenic 45.0%
! ATGTACCGACAATGACCTGT+AGG - tig0004828:123534-123553 None:intergenic 45.0%
AACAAGAAGGACACTAGTGC+TGG + tig0004828:123565-123584 Msa1341390:CDS 45.0%
GATGAACATCAAGCTATGGG+TGG + tig0004828:123703-123722 Msa1341390:CDS 45.0%
CATCCAGATTCAAGACATGC+TGG + tig0004828:123793-123812 Msa1341390:CDS 45.0%
ATTGCAGGAAGAACAGGTCA+TGG + tig0004828:123911-123930 Msa1341390:intron 45.0%
TTGCAGGAAGAACAGGTCAT+GGG + tig0004828:123912-123931 Msa1341390:intron 45.0%
TTGGTCATAGCCTCCATTCT+CGG - tig0004828:123951-123970 None:intergenic 45.0%
CAAAGACTGCTGGTATGTAG+TGG - tig0004828:124046-124065 None:intergenic 45.0%
CGGATGGCGCATACTATAAA+TGG - tig0004828:124079-124098 None:intergenic 45.0%
ATAGTATGCGCCATCCGTTA+AGG + tig0004828:124082-124101 Msa1341390:three_prime_UTR 45.0%
! ATGCTTCCTAGCTTAGCTTG+TGG + tig0004828:124283-124302 Msa1341390:three_prime_UTR 45.0%
!! TGCTTCCTAGCTTAGCTTGT+GGG + tig0004828:124284-124303 Msa1341390:three_prime_UTR 45.0%
TATAGCCCACAAGCTAAGCT+AGG - tig0004828:124292-124311 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG + tig0004828:120989-121008 Msa1341390:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTGA+GGG + tig0004828:120990-121009 Msa1341390:intron 5.0%
AAAAATTGCAGCGTCAGCCG+TGG + tig0004828:120119-120138 Msa1341390:five_prime_UTR 50.0%
!! GTTGTTGTTGGTGGTTGTGG+TGG - tig0004828:120205-120224 None:intergenic 50.0%
!! GCTGGTGTTGTTGTTGTTGG+TGG - tig0004828:120214-120233 None:intergenic 50.0%
CGGAAGAAGCCACTGAATGA+GGG - tig0004828:120313-120332 None:intergenic 50.0%
CTCAGCTTGAACCAGCTAAG+AGG + tig0004828:120342-120361 Msa1341390:CDS 50.0%
GAACCAGCTAAGAGGAAGAG+AGG + tig0004828:120350-120369 Msa1341390:CDS 50.0%
CTACCTCTCTTCCTCTTAGC+TGG - tig0004828:120356-120375 None:intergenic 50.0%
! TTAGCAGCTAGGGCTTGTTC+AGG - tig0004828:120398-120417 None:intergenic 50.0%
GTTATCAAGAGTGGGTGGAG+TGG - tig0004828:120447-120466 None:intergenic 50.0%
! CATGTCATTGCTGTTGCTGC+TGG + tig0004828:120765-120784 Msa1341390:CDS 50.0%
ACCTGGTAAGTACAGTGACG+CGG + tig0004828:120866-120885 Msa1341390:intron 50.0%
CAAAACAACCGTGGTGGCTA+AGG - tig0004828:121438-121457 None:intergenic 50.0%
! CTTAGCCACCACGGTTGTTT+TGG + tig0004828:121436-121455 Msa1341390:intron 50.0%
AAGTGCCAAAACAACCGTGG+TGG - tig0004828:121444-121463 None:intergenic 50.0%
GGGGACACTCTAGTAACATC+TGG + tig0004828:121661-121680 Msa1341390:intron 50.0%
! TTGGCTGGTGGCGAACTTAA+AGG - tig0004828:121810-121829 None:intergenic 50.0%
! GCCACCAGCCAAGATGTTTT+AGG + tig0004828:121818-121837 Msa1341390:intron 50.0%
!! ACGGAGAGAGGCATTAGAGA+TGG - tig0004828:122059-122078 None:intergenic 50.0%
! CTCCTGAAGATGCTGGTTGA+CGG - tig0004828:122078-122097 None:intergenic 50.0%
ATGTTGCCTCCTGAAGATGC+TGG - tig0004828:122085-122104 None:intergenic 50.0%
TGCACGCATCTGTGTGCTTA+TGG + tig0004828:122578-122597 Msa1341390:intron 50.0%
CGTCCTATCTGTCCTCTTGA+AGG - tig0004828:122728-122747 None:intergenic 50.0%
TTCGCCCTCCGGTTTCATTA+CGG - tig0004828:123001-123020 None:intergenic 50.0%
! ATCATAGGTGGTGGTGTTGG+TGG + tig0004828:123062-123081 Msa1341390:CDS 50.0%
!! TCATAGGTGGTGGTGTTGGT+GGG + tig0004828:123063-123082 Msa1341390:CDS 50.0%
!! ACTGGACCAGCAGCTTTAAG+GGG - tig0004828:123089-123108 None:intergenic 50.0%
GAACTGGACCAGCAGCTTTA+AGG - tig0004828:123091-123110 None:intergenic 50.0%
TAAAGCTGCTGGTCCAGTTC+AGG + tig0004828:123091-123110 Msa1341390:CDS 50.0%
TAGGTGTGAAAGCAGGAAGG+TGG - tig0004828:123447-123466 None:intergenic 50.0%
TGGTAGGTGTGAAAGCAGGA+AGG - tig0004828:123450-123469 None:intergenic 50.0%
TGCTTGGTAGGTGTGAAAGC+AGG - tig0004828:123454-123473 None:intergenic 50.0%
! AAGAAGGACACTAGTGCTGG+TGG + tig0004828:123568-123587 Msa1341390:CDS 50.0%
!! GACACTAGTGCTGGTGGAAA+AGG + tig0004828:123574-123593 Msa1341390:CDS 50.0%
GATGGCAACTTACCAGCAGA+GGG - tig0004828:123604-123623 None:intergenic 50.0%
TGATGGCAACTTACCAGCAG+AGG - tig0004828:123605-123624 None:intergenic 50.0%
GGTAAGTTGCCATCACCAGT+TGG + tig0004828:123610-123629 Msa1341390:CDS 50.0%
TGGAAGAGTCGACTGTTTGG+TGG - tig0004828:123660-123679 None:intergenic 50.0%
! CAAACAGTCGACTCTTCCAG+CGG + tig0004828:123661-123680 Msa1341390:CDS 50.0%
! AAACAGTCGACTCTTCCAGC+GGG + tig0004828:123662-123681 Msa1341390:CDS 50.0%
! CATGCTGGTTATGACCTGTC+AGG + tig0004828:123808-123827 Msa1341390:CDS 50.0%
CACTGGACTTCATACCTGAC+AGG - tig0004828:123825-123844 None:intergenic 50.0%
TGGTCATAGCCTCCATTCTC+GGG - tig0004828:123950-123969 None:intergenic 50.0%
TACCAGCAGTCTTTGTCACG+AGG + tig0004828:124051-124070 Msa1341390:three_prime_UTR 50.0%
GTCAGAAGCCACGACCTTAA+CGG - tig0004828:124099-124118 None:intergenic 50.0%
GCAAGCACCTTGAAACGGAA+GGG - tig0004828:124318-124337 None:intergenic 50.0%
AGCAAGCACCTTGAAACGGA+AGG - tig0004828:124319-124338 None:intergenic 50.0%
!! GTTGTTGGTGGTTGTGGTGG+TGG - tig0004828:120202-120221 None:intergenic 55.0%
AAGACCGTTCGTCGGAGATG+CGG - tig0004828:120258-120277 None:intergenic 55.0%
ATGTGGGACCCATCCGTGTT+TGG - tig0004828:120284-120303 None:intergenic 55.0%
GCGGAAGAAGCCACTGAATG+AGG - tig0004828:120314-120333 None:intergenic 55.0%
GATGCAGGCAATGCAGGACA+AGG + tig0004828:120732-120751 Msa1341390:intron 55.0%
! CATTGCTGTTGCTGCTGGTG+AGG + tig0004828:120770-120789 Msa1341390:CDS 55.0%
GCGTCACTGTACTTACCAGG+TGG - tig0004828:120867-120886 None:intergenic 55.0%
CCTGGTAAGTACAGTGACGC+GGG + tig0004828:120867-120886 Msa1341390:intron 55.0%
! AGATGCTGGTTGACGGAGAG+AGG - tig0004828:122071-122090 None:intergenic 55.0%
CTCCGTCAACCAGCATCTTC+AGG + tig0004828:122073-122092 Msa1341390:CDS 55.0%
CGTCAACCAGCATCTTCAGG+AGG + tig0004828:122076-122095 Msa1341390:CDS 55.0%
AATGAAACCGGAGGGCGAAG+TGG + tig0004828:123002-123021 Msa1341390:CDS 55.0%
GGAAAAGGTGATCCCTCTGC+TGG + tig0004828:123589-123608 Msa1341390:CDS 55.0%
GGCGAGCCAGCATCAAGTTT+AGG + tig0004828:123631-123650 Msa1341390:CDS 55.0%
CGCTGGAAGAGTCGACTGTT+TGG - tig0004828:123663-123682 None:intergenic 55.0%
ACCTCCCAGGTCTACAGAGT+GGG + tig0004828:123765-123784 Msa1341390:CDS 55.0%
TCTCACCAGTCTCCCGAGAA+TGG + tig0004828:123935-123954 Msa1341390:CDS 55.0%
! GAGATGGCTTGTGGGTTCGA+TGG + tig0004828:123989-124008 Msa1341390:three_prime_UTR 55.0%
GGTTCGATGGCACCAATGTC+TGG + tig0004828:124002-124021 Msa1341390:three_prime_UTR 55.0%
CACCTCGTGACAAAGACTGC+TGG - tig0004828:124056-124075 None:intergenic 55.0%
GAAGCCACGACCTTAACGGA+TGG - tig0004828:124095-124114 None:intergenic 55.0%
ACCACCGCATCTCCGACGAA+CGG + tig0004828:120251-120270 Msa1341390:CDS 60.0%
TGGGGTGATGCAGGCAATGC+AGG + tig0004828:120726-120745 Msa1341390:intron 60.0%
CTGCATCTGGTTGCACCACC+TGG + tig0004828:120849-120868 Msa1341390:intron 60.0%
CCCGCGTCACTGTACTTACC+AGG - tig0004828:120870-120889 None:intergenic 60.0%
AAGACCACCACTTCGCCCTC+CGG - tig0004828:123012-123031 None:intergenic 60.0%
!! CTTGATGCTGGCTCGCCAAC+TGG - tig0004828:123628-123647 None:intergenic 60.0%
TCCAGCGGGAATCCAATCCG+AGG + tig0004828:123676-123695 Msa1341390:CDS 60.0%
! TCCTCGGATTGGATTCCCGC+TGG - tig0004828:123680-123699 None:intergenic 60.0%
GTTTGCACGTGACACCTCCC+AGG + tig0004828:123752-123771 Msa1341390:CDS 60.0%
CACCTCCCAGGTCTACAGAG+TGG + tig0004828:123764-123783 Msa1341390:CDS 60.0%
CCTCCCAGGTCTACAGAGTG+GGG + tig0004828:123766-123785 Msa1341390:CDS 60.0%
CTCCCAGGTCTACAGAGTGG+GGG + tig0004828:123767-123786 Msa1341390:CDS 60.0%
CTCCCCCACTCTGTAGACCT+GGG - tig0004828:123772-123791 None:intergenic 60.0%
ACTCCCCCACTCTGTAGACC+TGG - tig0004828:123773-123792 None:intergenic 60.0%
CACCAGTCTCCCGAGAATGG+AGG + tig0004828:123938-123957 Msa1341390:CDS 60.0%
AGCCTCCATTCTCGGGAGAC+TGG - tig0004828:123943-123962 None:intergenic 60.0%
TGCGCCATCCGTTAAGGTCG+TGG + tig0004828:124088-124107 Msa1341390:three_prime_UTR 60.0%
GTTCGTCGGAGATGCGGTGG+TGG - tig0004828:120252-120271 None:intergenic 65.0%
ACCGTTCGTCGGAGATGCGG+TGG - tig0004828:120255-120274 None:intergenic 65.0%
GAAACCGGAGGGCGAAGTGG+TGG + tig0004828:123005-123024 Msa1341390:CDS 65.0%
GGTGGGCCCCTTAAAGCTGC+TGG + tig0004828:123080-123099 Msa1341390:CDS 65.0%
!! GCTGGCTCGCCAACTGGTGA+TGG - tig0004828:123622-123641 None:intergenic 65.0%
CCCCACTCTGTAGACCTGGG+AGG - tig0004828:123769-123788 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0004828 gene 119955 124340 119955 ID=Msa1341390;Name=Msa1341390
tig0004828 mRNA 119955 124340 119955 ID=Msa1341390-mRNA-1;Parent=Msa1341390;Name=Msa1341390-mRNA-1;_AED=0.06;_eAED=0.06;_QI=209|1|1|1|1|1|6|358|355
tig0004828 exon 119955 120536 119955 ID=Msa1341390-mRNA-1:exon:3103;Parent=Msa1341390-mRNA-1
tig0004828 exon 120739 120791 120739 ID=Msa1341390-mRNA-1:exon:3104;Parent=Msa1341390-mRNA-1
tig0004828 exon 121983 122114 121983 ID=Msa1341390-mRNA-1:exon:3105;Parent=Msa1341390-mRNA-1
tig0004828 exon 122960 123112 122960 ID=Msa1341390-mRNA-1:exon:3106;Parent=Msa1341390-mRNA-1
tig0004828 exon 123538 123829 123538 ID=Msa1341390-mRNA-1:exon:3107;Parent=Msa1341390-mRNA-1
tig0004828 exon 123918 124340 123918 ID=Msa1341390-mRNA-1:exon:3108;Parent=Msa1341390-mRNA-1
tig0004828 five_prime_UTR 119955 120163 119955 ID=Msa1341390-mRNA-1:five_prime_utr;Parent=Msa1341390-mRNA-1
tig0004828 CDS 120164 120536 120164 ID=Msa1341390-mRNA-1:cds;Parent=Msa1341390-mRNA-1
tig0004828 CDS 120739 120791 120739 ID=Msa1341390-mRNA-1:cds;Parent=Msa1341390-mRNA-1
tig0004828 CDS 121983 122114 121983 ID=Msa1341390-mRNA-1:cds;Parent=Msa1341390-mRNA-1
tig0004828 CDS 122960 123112 122960 ID=Msa1341390-mRNA-1:cds;Parent=Msa1341390-mRNA-1
tig0004828 CDS 123538 123829 123538 ID=Msa1341390-mRNA-1:cds;Parent=Msa1341390-mRNA-1
tig0004828 CDS 123918 123982 123918 ID=Msa1341390-mRNA-1:cds;Parent=Msa1341390-mRNA-1
tig0004828 three_prime_UTR 123983 124340 123983 ID=Msa1341390-mRNA-1:three_prime_utr;Parent=Msa1341390-mRNA-1
Gene Sequence

>Msa1341390

ATGGACTCCAATGACAACCAATTAAGCTCTTTCTTCCACCACCACAACCACCAACAACAACAACACCAGCAACAGCAACAAAACTCCACCACCGCATCTCCGACGAACGGTCTTTTACCAAACACGGATGGGTCCCACATACTTTACCCTCATTCAGTGGCTTCTTCCGCTGTTTCTTCTCAGCTTGAACCAGCTAAGAGGAAGAGAGGTAGACCTAGAAAATATGGTACTCCTGAACAAGCCCTAGCTGCTAAAAAAGCTTCTACGTCGTCGTTTTCTCCCACTCCACCCACTCTTGATAACAACAAGAATACTCACTCTTTCTCTCCTCCTCCTTCTTTCACCTCTAAGAAATCTCATTCTCTCTTTCTAGGCAATGCAGGACAAGGTTTCAGTGCACATGTCATTGCTGTTGCTGCTGGTGAGGATGTTGGGCAGAAAATTATGCAATTTATGCAACAAAATAGGGGTGAGATATGCATTATGTCTGCATCTGGTTCCATCTCTAATGCCTCTCTCCGTCAACCAGCATCTTCAGGAGGCAACATTATGTATGAGGGTCGGTTTGATATTATTTCGCTTACTGGTTCCTATGTCCGTAATGAAACCGGAGGGCGAAGTGGTGGTCTTAGTGTATGCTTGTCTAATTCTGATGGACAAATCATAGGTGGTGGTGTTGGTGGGCCCCTTAAAGCTGCTGGTCCAGTTCAGGTCATTGTCGGTACATTTTTTATGGACAACAAGAAGGACACTAGTGCTGGTGGAAAAGGTGATCCCTCTGCTGGTAAGTTGCCATCACCAGTTGGCGAGCCAGCATCAAGTTTAGGTTTCCACCAAACAGTCGACTCTTCCAGCGGGAATCCAATCCGAGGAAATGATGAACATCAAGCTATGGGTGGAAGCCATTACATGATTCAACAACTTGGTTTGCACGTGACACCTCCCAGGTCTACAGAGTGGGGGAGTCATCCAGATTCAAGACATGCTGGTTATGACCTGTCAGGAAGAACAGGTCATGGGTCTCACCAGTCTCCCGAGAATGGAGGCTATGACCAAATTCCTGATTGA
Protein sequence

>Msa1341390

MDSNDNQLSSFFHHHNHQQQQHQQQQQNSTTASPTNGLLPNTDGSHILYPHSVASSAVSSQLEPAKRKRGRPRKYGTPEQALAAKKASTSSFSPTPPTLDNNKNTHSFSPPPSFTSKKSHSLFLGNAGQGFSAHVIAVAAGEDVGQKIMQFMQQNRGEICIMSASGSISNASLRQPASSGGNIMYEGRFDIISLTGSYVRNETGGRSGGLSVCLSNSDGQIIGGGVGGPLKAAGPVQVIVGTFFMDNKKDTSAGGKGDPSAGKLPSPVGEPASSLGFHQTVDSSSGNPIRGNDEHQAMGGSHYMIQQLGLHVTPPRSTEWGSHPDSRHAGYDLSGRTGHGSHQSPENGGYDQIPD*