AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0802950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802950 MtrunA17_Chr5g0410791 91.268 355 7 2 1 331 1 355 0.0 616
Msa0802950 MtrunA17_Chr2g0289301 46.058 241 116 2 104 330 75 315 3.02e-59 193
Msa0802950 MtrunA17_Chr2g0289291 40.293 273 134 4 72 330 57 314 3.05e-52 174
Msa0802950 MtrunA17_Chr1g0202631 34.459 148 59 4 80 213 18 141 2.19e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802950 AT2G35490.1 58.521 311 83 7 52 331 80 375 1.14e-105 314
Msa0802950 AT4G04020.1 43.003 293 127 5 53 331 51 317 7.61e-72 226
Msa0802950 AT4G22240.1 45.418 251 120 4 96 331 61 309 2.74e-70 221

Find 128 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATATACCTTTCACATTT+TGG 0.069136 5_3:-17919073 None:intergenic
CGGAGCTTCTTAATGGAAAT+TGG 0.137957 5_3:+17915604 Msa0802950:CDS
TCAAGCTGTTGTGTATTTAA+AGG 0.171848 5_3:+17919118 Msa0802950:three_prime_UTR
TCTTTATCCTCCAAGGTTTC+AGG 0.177149 5_3:+17915303 Msa0802950:intron
TTATTTCACCTAAGCTAATA+AGG 0.205848 5_3:-17919239 None:intergenic
GAAGAGAGAGAAGAAGGTTT+AGG 0.227490 5_3:-17915123 None:intergenic
AATAATAATATATATTGATT+TGG 0.232043 5_3:+17919257 Msa0802950:three_prime_UTR
GAGGCCCCAGGCTAAGATTT+TGG 0.241414 5_3:-17918752 None:intergenic
AAGAGAGAGAAGAAGGTTTA+GGG 0.248806 5_3:-17915122 None:intergenic
AGTATATCACGTGTCATTTC+AGG 0.278085 5_3:+17918813 Msa0802950:CDS
TTTATATATAACAGAATTAC+AGG 0.284747 5_3:-17919193 None:intergenic
GAGGAACCGGAGCTTCTTAA+TGG 0.292365 5_3:+17915597 Msa0802950:CDS
ATAATAATATATATTGATTT+GGG 0.311097 5_3:+17919258 Msa0802950:three_prime_UTR
TCCTTCCTCCACCGGAGCTT+CGG 0.359087 5_3:-17915424 None:intergenic
TTTGGGTGGGCAGAGGGAAA+TGG 0.360329 5_3:-17919055 None:intergenic
GAGAATACCTGTATTCTTGC+AGG 0.368434 5_3:-17916660 None:intergenic
TATTTCACCTAAGCTAATAA+GGG 0.369113 5_3:-17919238 None:intergenic
TTTGGCTTCGGGTACGGGTT+CGG 0.370928 5_3:-17915277 None:intergenic
TTGGGTGGGCAGAGGGAAAT+GGG 0.375489 5_3:-17919054 None:intergenic
TCCAGCTCCGGTTGAGGAAC+CGG 0.381411 5_3:+17915584 Msa0802950:CDS
AGCTATAGCGATGCTGGAAA+TGG 0.384313 5_3:+17915384 Msa0802950:CDS
ATCCTCCAAGGTTTCAGGTT+CGG 0.389859 5_3:+17915308 Msa0802950:intron
ACCCCATTCATCGGAGATAT+CGG 0.397999 5_3:-17915247 None:intergenic
CACCGATATCTCCGATGAAT+GGG 0.399176 5_3:+17915245 Msa0802950:CDS
GAGTCCCCTTCTTGATTAGT+AGG 0.407924 5_3:+17918962 Msa0802950:exon
GTCTGAGTTCGTGGCTCAGC+TGG 0.408469 5_3:+17915545 Msa0802950:CDS
GCAACAATCTCTCGGTCCTC+TGG 0.412778 5_3:+17918776 Msa0802950:CDS
AGCTGAAGTGTCTGAGTTCG+TGG 0.413942 5_3:+17915536 Msa0802950:CDS
TTCGAAGAACGAGGATGAAT+GGG 0.414775 5_3:+17915335 Msa0802950:CDS
TCCGGTTCCTCAACCGGAGC+TGG 0.418179 5_3:-17915585 None:intergenic
AGAAGCTCCGGTTCCTCAAC+CGG 0.420996 5_3:-17915591 None:intergenic
GGAGGGAATGATGAGCTTGA+GGG 0.424981 5_3:+17915444 Msa0802950:CDS
TGGGTGGGCAGAGGGAAATG+GGG 0.428409 5_3:-17919053 None:intergenic
GCTTGTCCTCTCACCAGGTA+TGG 0.429636 5_3:-17918856 None:intergenic
GTCGCCGATGTCGCCGGTGG+CGG 0.430419 5_3:-17915208 None:intergenic
CCACCGATATCTCCGATGAA+TGG 0.434882 5_3:+17915244 Msa0802950:CDS
GGGAGAGAAGAGAGAGAAGA+AGG 0.440214 5_3:-17915129 None:intergenic
CTTCGAAGAACGAGGATGAA+TGG 0.442545 5_3:+17915334 Msa0802950:CDS
CTGAAAGATGATGAGGCAAA+AGG 0.448168 5_3:-17916609 None:intergenic
GGAGCTTCTTAATGGAAATT+GGG 0.448405 5_3:+17915605 Msa0802950:CDS
GGCTTCTGCTTCCGAAGCTC+CGG 0.449575 5_3:+17915413 Msa0802950:CDS
TCGAAGCCCTGCAAGAATAC+AGG 0.454672 5_3:+17916653 Msa0802950:CDS
GTTCACAACAGTGGAGCTAT+AGG 0.458564 5_3:-17916568 None:intergenic
ATCTCCGCCACCGGCGACAT+CGG 0.461752 5_3:+17915204 Msa0802950:CDS
AGCAGCAGGAGCATTACCTT+TGG 0.464327 5_3:+17916512 Msa0802950:CDS
GAAACGTGCTCTTGTTGATA+CGG 0.468444 5_3:+17915470 Msa0802950:CDS
CTGTTTGTCCTTGCAAGAGA+AGG 0.478451 5_3:+17918939 Msa0802950:CDS
GCCGGGAGCTATAGCGATGC+TGG 0.479717 5_3:+17915378 Msa0802950:CDS
ACAAGGACTTGCGAATATCA+AGG 0.487719 5_3:+17918904 Msa0802950:CDS
TGCTTCCGAAGCTCCGGTGG+AGG 0.494772 5_3:+17915419 Msa0802950:CDS
CTCCGCTTCATCTCCGCCAC+CGG 0.499195 5_3:+17915195 Msa0802950:CDS
CCCTACTCCAGCTCCGGTTG+AGG 0.499200 5_3:+17915578 Msa0802950:CDS
CAATTTCCATTAAGAAGCTC+CGG 0.508343 5_3:-17915603 None:intergenic
TGCTAACCCTACTCCAGCTC+CGG 0.509109 5_3:+17915572 Msa0802950:CDS
TCATTCCCTCCTTCCTCCAC+CGG 0.509274 5_3:-17915432 None:intergenic
TCCTCAACCGGAGCTGGAGT+AGG 0.509816 5_3:-17915579 None:intergenic
CATTCATCCTCGTTCTTCGA+AGG 0.514164 5_3:-17915333 None:intergenic
GCGGAGATGAAGCGGAGAGA+AGG 0.516052 5_3:-17915189 None:intergenic
AGGAGGGAATGATGAGCTTG+AGG 0.516146 5_3:+17915443 Msa0802950:CDS
AGCATTACCTTTGGTGAAGG+TGG 0.517212 5_3:+17916521 Msa0802950:CDS
CCAGGTATGGGAATCTTAAG+AGG 0.518200 5_3:-17918843 None:intergenic
CAAGAGCTTGTCCTCTCACC+AGG 0.518418 5_3:-17918861 None:intergenic
CTGTTGCCTCTTCTAGCAGC+AGG 0.518463 5_3:+17916498 Msa0802950:CDS
TGAAAGATGATGAGGCAAAA+GGG 0.519153 5_3:-17916608 None:intergenic
TTTGGCCAAAATCTTAGCCT+GGG 0.525313 5_3:+17918747 Msa0802950:CDS
TACTTCCTACTAATCAAGAA+GGG 0.525799 5_3:-17918967 None:intergenic
CTTGTCCTCTCACCAGGTAT+GGG 0.526234 5_3:-17918855 None:intergenic
CTGGTGAGAGGACAAGCTCT+TGG 0.530530 5_3:+17918862 Msa0802950:CDS
GTGGGCAGAGGGAAATGGGG+TGG 0.530810 5_3:-17919050 None:intergenic
GGATTTCTCACCCCATTCAT+CGG 0.532988 5_3:-17915256 None:intergenic
GGAGCTTCGGAAGCAGAAGC+CGG 0.533335 5_3:-17915411 None:intergenic
CCTCAACCGGAGCTGGAGTA+GGG 0.535928 5_3:-17915578 None:intergenic
TCCGAAGCTCCGGTGGAGGA+AGG 0.537667 5_3:+17915423 Msa0802950:CDS
CAAGTCCTTGTCAAGATATG+TGG 0.538461 5_3:-17918892 None:intergenic
AAGGGAATCGGTGAGAGCGA+GGG 0.540536 5_3:-17915170 None:intergenic
TGAAGCGGAGAGAAGGGAAT+CGG 0.540766 5_3:-17915182 None:intergenic
GAGATTGTTGCAGAGGCCCC+AGG 0.541693 5_3:-17918764 None:intergenic
CGCCGGTGGCGGAGATGAAG+CGG 0.543024 5_3:-17915197 None:intergenic
GGGCCTCTGCAACAATCTCT+CGG 0.543281 5_3:+17918768 Msa0802950:CDS
TTACTTCCTACTAATCAAGA+AGG 0.544198 5_3:-17918968 None:intergenic
AATCAGGTTACATTCAAAGA+AGG 0.544455 5_3:+17918666 Msa0802950:intron
AGGGAATCGGTGAGAGCGAG+GGG 0.544952 5_3:-17915169 None:intergenic
TTCTGCTTCCGAAGCTCCGG+TGG 0.547279 5_3:+17915416 Msa0802950:CDS
CGGAGATGAAGCGGAGAGAA+GGG 0.547347 5_3:-17915188 None:intergenic
TGTTTGTCCTTGCAAGAGAA+GGG 0.549187 5_3:+17918940 Msa0802950:CDS
CAAGGACTTGCGAATATCAA+GGG 0.550792 5_3:+17918905 Msa0802950:CDS
GAAGGGAATCGGTGAGAGCG+AGG 0.552044 5_3:-17915171 None:intergenic
GGACCGAGAGATTGTTGCAG+AGG 0.552909 5_3:-17918771 None:intergenic
ATCAGCGTCGCCGATGTCGC+CGG 0.555042 5_3:-17915214 None:intergenic
CCTCTTAAGATTCCCATACC+TGG 0.555697 5_3:+17918843 Msa0802950:CDS
TCCAGCATCGCTATAGCTCC+CGG 0.556872 5_3:-17915379 None:intergenic
GAGGGAATGATGAGCTTGAG+GGG 0.557038 5_3:+17915445 Msa0802950:CDS
AGAATACCTGTATTCTTGCA+GGG 0.561505 5_3:-17916659 None:intergenic
AACGAGGATGAATGGGGAGA+AGG 0.562177 5_3:+17915342 Msa0802950:CDS
GAATTACAGGTTTACAACAC+AGG 0.567869 5_3:-17919180 None:intergenic
GATGAGAGGAACACGTAGTG+TGG 0.575131 5_3:-17915088 None:intergenic
TCTCGGTCCTCTGGAGAATG+TGG 0.575723 5_3:+17918785 Msa0802950:CDS
GAAGCTCCGGTGGAGGAAGG+AGG 0.576759 5_3:+17915426 Msa0802950:CDS
AGGAGCATTACCTTTGGTGA+AGG 0.578672 5_3:+17916518 Msa0802950:CDS
GAATATCAAGGGGAGATGGC+GGG 0.578933 5_3:+17918916 Msa0802950:CDS
ATTTCACCTAAGCTAATAAG+GGG 0.579026 5_3:-17919237 None:intergenic
GGGGAGAGAGAGATTCGAGA+GGG 0.579833 5_3:-17915150 None:intergenic
CGATGCTGGAAATGGAACTC+CGG 0.580650 5_3:+17915392 Msa0802950:CDS
GGGGACTCCCTTCTCTTGCA+AGG 0.586669 5_3:-17918947 None:intergenic
TTGCGAATATCAAGGGGAGA+TGG 0.589364 5_3:+17918912 Msa0802950:CDS
CTGCCCACCCAAAATGTGAA+AGG 0.591170 5_3:+17919065 Msa0802950:three_prime_UTR
CGAATATCAAGGGGAGATGG+CGG 0.593044 5_3:+17918915 Msa0802950:CDS
AAGCTCCGGTGGAGGAAGGA+GGG 0.601932 5_3:+17915427 Msa0802950:CDS
AGGGCTTCGAACTTCAAATG+AGG 0.604253 5_3:-17916640 None:intergenic
TTGGCCAAAATCTTAGCCTG+GGG 0.612553 5_3:+17918748 Msa0802950:CDS
AATGCTCCTGCTGCTAGAAG+AGG 0.620670 5_3:-17916504 None:intergenic
TTCGGTTCCTTCGAAGAACG+AGG 0.624221 5_3:+17915326 Msa0802950:CDS
AGCGTCGCCGATGTCGCCGG+TGG 0.633818 5_3:-17915211 None:intergenic
TCATCGGAGATATCGGTGGA+TGG 0.639488 5_3:-17915240 None:intergenic
ACTTCCTACTAATCAAGAAG+GGG 0.640290 5_3:-17918966 None:intergenic
AGATGCACTGAAAGATGATG+AGG 0.643499 5_3:-17916616 None:intergenic
AGATTCCCATACCTGGTGAG+AGG 0.651644 5_3:+17918850 Msa0802950:CDS
TCTTACCACATATCTTGACA+AGG 0.653066 5_3:+17918887 Msa0802950:CDS
CCATTCATCGGAGATATCGG+TGG 0.655548 5_3:-17915244 None:intergenic
TGTGGAAGAGAGAAGAGACA+TGG 0.661649 5_3:-17915070 None:intergenic
TCGAAGAACGAGGATGAATG+GGG 0.664578 5_3:+17915336 Msa0802950:CDS
ACCGATATCTCCGATGAATG+GGG 0.667674 5_3:+17915246 Msa0802950:CDS
AGGGGAGAGAGAGATTCGAG+AGG 0.683598 5_3:-17915151 None:intergenic
AAGGACTTGCGAATATCAAG+GGG 0.684902 5_3:+17918906 Msa0802950:CDS
GGGAGAGAGAGATTCGAGAG+GGG 0.695795 5_3:-17915149 None:intergenic
TGTCACAGAGTTCACAACAG+TGG 0.699209 5_3:-17916577 None:intergenic
TTTCACCTAAGCTAATAAGG+GGG 0.706298 5_3:-17919236 None:intergenic
CTTGCAACCACATTCTCCAG+AGG 0.715896 5_3:-17918792 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACAAATTTTAATCATA+GGG + chr5_3:17915791-17915810 Msa0802950:intron 10.0%
!! TAAACTATTTATATTGTAAA+AGG + chr5_3:17916112-17916131 Msa0802950:intron 10.0%
!!! TATCTTTTCTTTTTTATATT+CGG + chr5_3:17919027-17919046 Msa0802950:three_prime_UTR 10.0%
!!! CTTTTACAAATTTTAATCAT+AGG + chr5_3:17915790-17915809 Msa0802950:intron 15.0%
!!! ATTAATGATCTTTTTTATGT+TGG + chr5_3:17916003-17916022 Msa0802950:intron 15.0%
!!! TTAATGATCTTTTTTATGTT+GGG + chr5_3:17916004-17916023 Msa0802950:intron 15.0%
!! TTCATTACTAAATTGAAAAA+AGG + chr5_3:17916699-17916718 Msa0802950:intron 15.0%
!!! ATTATTTTCTTAGATATGAT+AGG - chr5_3:17917069-17917088 None:intergenic 15.0%
!! CAAAACTGTAATATTATTTA+TGG + chr5_3:17917290-17917309 Msa0802950:intron 15.0%
!! TGTAATATTATTTATGGAAA+AGG + chr5_3:17917296-17917315 Msa0802950:intron 15.0%
!!! TAAATTAAGTTGATTTTACA+CGG - chr5_3:17918221-17918240 None:intergenic 15.0%
!! AATGATTAACTTATAACAAA+GGG - chr5_3:17918575-17918594 None:intergenic 15.0%
!! TAATGATTAACTTATAACAA+AGG - chr5_3:17918576-17918595 None:intergenic 15.0%
!! TTTATATATAACAGAATTAC+AGG - chr5_3:17919196-17919215 None:intergenic 15.0%
!!! CAATTTATTGACAATGTTTT+AGG + chr5_3:17916219-17916238 Msa0802950:intron 20.0%
!! TAAATTGAAAAAAGGCAAAA+AGG + chr5_3:17916707-17916726 Msa0802950:intron 20.0%
!!! TTTGCTATAAAGAATTAAGA+TGG + chr5_3:17917158-17917177 Msa0802950:intron 20.0%
!!! GTTTTGTTATCTTGATTTTA+CGG - chr5_3:17917276-17917295 None:intergenic 20.0%
!!! TGGAATAGAGATTTTATTAA+CGG - chr5_3:17917918-17917937 None:intergenic 20.0%
!! ATACTAAGAAAAACATTTGT+CGG - chr5_3:17918306-17918325 None:intergenic 20.0%
! ATAAGATGTTAACACAAACA+GGG - chr5_3:17916047-17916066 None:intergenic 25.0%
! AATAAGATGTTAACACAAAC+AGG - chr5_3:17916048-17916067 None:intergenic 25.0%
!! ATGTTTTCAATGCAAAGTAA+AGG - chr5_3:17916335-17916354 None:intergenic 25.0%
!! ATTTTGTATCTTAGAAACGA+AGG + chr5_3:17916360-17916379 Msa0802950:intron 25.0%
! AATTTAGTAATGAAATGCGA+AGG - chr5_3:17916693-17916712 None:intergenic 25.0%
! GATACTTATCTAATGAGAAA+AGG - chr5_3:17916827-17916846 None:intergenic 25.0%
! TAGTAAGTTACTGTGAAATA+TGG + chr5_3:17916901-17916920 Msa0802950:intron 25.0%
! TTAGATATGATAGGACATTA+AGG - chr5_3:17917060-17917079 None:intergenic 25.0%
! GTCTGAGTAGTTAATTTAAA+TGG - chr5_3:17917113-17917132 None:intergenic 25.0%
! ACATTCTGTTATAAAAGTGA+GGG - chr5_3:17917483-17917502 None:intergenic 25.0%
! AACATTCTGTTATAAAAGTG+AGG - chr5_3:17917484-17917503 None:intergenic 25.0%
! CTTAACAGCTTATTAACAAT+TGG - chr5_3:17918011-17918030 None:intergenic 25.0%
! CTTAGTATTAAGCAATAAGA+TGG + chr5_3:17918318-17918337 Msa0802950:intron 25.0%
! TAACACTTCTAAATGAAATC+AGG + chr5_3:17918650-17918669 Msa0802950:intron 25.0%
!! TCAATTTTAGACTTTATCTC+TGG - chr5_3:17918705-17918724 None:intergenic 25.0%
!!! AAATGTTTATGTTTTCTGGT+AGG - chr5_3:17918728-17918747 None:intergenic 25.0%
!! CCAAAAATGTTTATGTTTTC+TGG - chr5_3:17918732-17918751 None:intergenic 25.0%
!! CCAGAAAACATAAACATTTT+TGG + chr5_3:17918729-17918748 Msa0802950:CDS 25.0%
!! GAATATACCTTTCACATTTT+GGG - chr5_3:17919075-17919094 None:intergenic 25.0%
!! TGAATATACCTTTCACATTT+TGG - chr5_3:17919076-17919095 None:intergenic 25.0%
!!! GCCTATGTGTTTTTTTTTAA+CGG + chr5_3:17919148-17919167 Msa0802950:three_prime_UTR 25.0%
! ACCGTTAAAAAAAAACACAT+AGG - chr5_3:17919152-17919171 None:intergenic 25.0%
! TATTTCACCTAAGCTAATAA+GGG - chr5_3:17919241-17919260 None:intergenic 25.0%
! TTATTTCACCTAAGCTAATA+AGG - chr5_3:17919242-17919261 None:intergenic 25.0%
AGTTTGATTGACATCATAGT+TGG + chr5_3:17915821-17915840 Msa0802950:intron 30.0%
! TACGTTTTATGAGACTGTTT+GGG - chr5_3:17916264-17916283 None:intergenic 30.0%
! ATACGTTTTATGAGACTGTT+TGG - chr5_3:17916265-17916284 None:intergenic 30.0%
ACTTTGCATTGAAAACATAG+AGG + chr5_3:17916337-17916356 Msa0802950:intron 30.0%
!!! TTTTGAGTTAGTTACATCCA+TGG - chr5_3:17916394-17916413 None:intergenic 30.0%
! ATGATTGTCAAACTGATTTC+AGG + chr5_3:17916457-17916476 Msa0802950:intron 30.0%
AAAAAAAGAGCAAACCTAGT+AGG + chr5_3:17916755-17916774 Msa0802950:intron 30.0%
TATCTAATGAGAAAAGGCTT+TGG - chr5_3:17916821-17916840 None:intergenic 30.0%
AATCACAACACAACATCAAT+TGG - chr5_3:17916938-17916957 None:intergenic 30.0%
TAAAAAAACCCTAGATGAGA+TGG + chr5_3:17917014-17917033 Msa0802950:intron 30.0%
AAAAAAACCCTAGATGAGAT+GGG + chr5_3:17917015-17917034 Msa0802950:intron 30.0%
CAATTTACAAAAGCCTTAGT+TGG + chr5_3:17917182-17917201 Msa0802950:intron 30.0%
TGAGAAATATTGTCAGAAGT+TGG - chr5_3:17917440-17917459 None:intergenic 30.0%
AGGGAAGAATTAGTTACATT+TGG + chr5_3:17917702-17917721 Msa0802950:intron 30.0%
! AGAATTAGTTACATTTGGTG+AGG + chr5_3:17917707-17917726 Msa0802950:intron 30.0%
TTGGTTAGGAAAATTATCTC+TGG + chr5_3:17917819-17917838 Msa0802950:intron 30.0%
TTAGGAAAATTATCTCTGGT+AGG + chr5_3:17917823-17917842 Msa0802950:intron 30.0%
GAAGAAAAGGAAATAACCAA+GGG - chr5_3:17917871-17917890 None:intergenic 30.0%
AGAAGAAAAGGAAATAACCA+AGG - chr5_3:17917872-17917891 None:intergenic 30.0%
AATAGCTCTTACAGAAGAAA+AGG - chr5_3:17917884-17917903 None:intergenic 30.0%
ACTGAGAATTCAAGTATCAA+TGG - chr5_3:17917938-17917957 None:intergenic 30.0%
! AACTATCCTATACCTTCTTT+TGG - chr5_3:17918191-17918210 None:intergenic 30.0%
AAAAACAATACTGTGAACTC+AGG - chr5_3:17918399-17918418 None:intergenic 30.0%
AATCAGGTTACATTCAAAGA+AGG + chr5_3:17918666-17918685 Msa0802950:intron 30.0%
! ATTTTAGACTTTATCTCTGG+AGG - chr5_3:17918702-17918721 None:intergenic 30.0%
TACTTCCTACTAATCAAGAA+GGG - chr5_3:17918970-17918989 None:intergenic 30.0%
TTACTTCCTACTAATCAAGA+AGG - chr5_3:17918971-17918990 None:intergenic 30.0%
TCAAGCTGTTGTGTATTTAA+AGG + chr5_3:17919118-17919137 Msa0802950:three_prime_UTR 30.0%
ATTTCACCTAAGCTAATAAG+GGG - chr5_3:17919240-17919259 None:intergenic 30.0%
AAGAGAGAGAAGAAGGTTTA+GGG - chr5_3:17915125-17915144 None:intergenic 35.0%
CTCTTGTTGATACGGTTTAT+GGG + chr5_3:17915478-17915497 Msa0802950:intron 35.0%
CAATTTCCATTAAGAAGCTC+CGG - chr5_3:17915606-17915625 None:intergenic 35.0%
GGAGCTTCTTAATGGAAATT+GGG + chr5_3:17915605-17915624 Msa0802950:CDS 35.0%
AGTTGGAAATCTCTGTATAC+CGG + chr5_3:17915838-17915857 Msa0802950:intron 35.0%
ACGTCACACTGATAATAAGT+TGG + chr5_3:17915874-17915893 Msa0802950:intron 35.0%
!! GTTGGGAGTATTTAGAACTT+AGG + chr5_3:17916021-17916040 Msa0802950:intron 35.0%
ACTTATTTGAGCGTATCTAC+TGG - chr5_3:17916289-17916308 None:intergenic 35.0%
CAAAATAAGCCAATCCAAAC+AGG + chr5_3:17916309-17916328 Msa0802950:intron 35.0%
!!! AAACGAAGGTATTTTTGCCA+TGG + chr5_3:17916374-17916393 Msa0802950:intron 35.0%
! ATTTTATCCACCTTCACCAA+AGG - chr5_3:17916531-17916550 None:intergenic 35.0%
TGAAAGATGATGAGGCAAAA+GGG - chr5_3:17916611-17916630 None:intergenic 35.0%
AGAATACCTGTATTCTTGCA+GGG - chr5_3:17916662-17916681 None:intergenic 35.0%
! TATTTTGCCTTTCACCTACT+AGG - chr5_3:17916772-17916791 None:intergenic 35.0%
CACAATATCAAGGATTGTGA+CGG - chr5_3:17916864-17916883 None:intergenic 35.0%
TTGATGTTGTGTTGTGATTG+CGG + chr5_3:17916939-17916958 Msa0802950:intron 35.0%
TGAGAGTCTTAATCACTCTT+GGG - chr5_3:17917213-17917232 None:intergenic 35.0%
TTGAGAGTCTTAATCACTCT+TGG - chr5_3:17917214-17917233 None:intergenic 35.0%
! TCACTAAGTCTGAAGCTAAA+GGG - chr5_3:17917247-17917266 None:intergenic 35.0%
! ATCACTAAGTCTGAAGCTAA+AGG - chr5_3:17917248-17917267 None:intergenic 35.0%
CTGTTATAAAAGTGAGGGAA+AGG - chr5_3:17917478-17917497 None:intergenic 35.0%
TTAGTCCAGTAAGAGTTAGT+GGG - chr5_3:17917527-17917546 None:intergenic 35.0%
TTTCCAAATTGCTGACCTAT+GGG - chr5_3:17917654-17917673 None:intergenic 35.0%
! CAATTTGGAAAGTGTATGTC+AGG + chr5_3:17917663-17917682 Msa0802950:intron 35.0%
! ATTAGTTACATTTGGTGAGG+TGG + chr5_3:17917710-17917729 Msa0802950:intron 35.0%
! GAGAGAATCATTCATGCTTT+TGG + chr5_3:17917789-17917808 Msa0802950:intron 35.0%
!! TCATGCTTTTGGTGATTTGT+TGG + chr5_3:17917800-17917819 Msa0802950:intron 35.0%
!!! CTTTTGGTGATTTGTTGGTT+AGG + chr5_3:17917805-17917824 Msa0802950:intron 35.0%
CTATCACCTAGCAAGTTAAA+CGG + chr5_3:17917960-17917979 Msa0802950:intron 35.0%
! AGTTAAACGGTTGAGTTTTG+TGG + chr5_3:17917973-17917992 Msa0802950:intron 35.0%
!! GTTAAACGGTTGAGTTTTGT+GGG + chr5_3:17917974-17917993 Msa0802950:intron 35.0%
CAACACATACATATTGCTCA+AGG + chr5_3:17918051-17918070 Msa0802950:intron 35.0%
CTTTGACTACATCCAAAAGA+AGG + chr5_3:17918176-17918195 Msa0802950:intron 35.0%
! CTACATCCAAAAGAAGGTAT+AGG + chr5_3:17918182-17918201 Msa0802950:intron 35.0%
ACAAACAGAAGAGCTTATGA+AGG - chr5_3:17918273-17918292 None:intergenic 35.0%
AAGAACAAATACAACGTGAC+TGG - chr5_3:17918465-17918484 None:intergenic 35.0%
!! AAAAAGTTCTAAGCAAGCTG+AGG - chr5_3:17918603-17918622 None:intergenic 35.0%
!! AGTATATCACGTGTCATTTC+AGG + chr5_3:17918813-17918832 Msa0802950:CDS 35.0%
TCTTACCACATATCTTGACA+AGG + chr5_3:17918887-17918906 Msa0802950:CDS 35.0%
ACTTCCTACTAATCAAGAAG+GGG - chr5_3:17918969-17918988 None:intergenic 35.0%
!! ATACCTTTCACATTTTGGGT+GGG - chr5_3:17919071-17919090 None:intergenic 35.0%
! TATACCTTTCACATTTTGGG+TGG - chr5_3:17919072-17919091 None:intergenic 35.0%
GAATTACAGGTTTACAACAC+AGG - chr5_3:17919183-17919202 None:intergenic 35.0%
TTTCACCTAAGCTAATAAGG+GGG - chr5_3:17919239-17919258 None:intergenic 35.0%
GAAGAGAGAGAAGAAGGTTT+AGG - chr5_3:17915126-17915145 None:intergenic 40.0%
! GATAAAGATGGTTTGGCTTC+GGG - chr5_3:17915291-17915310 None:intergenic 40.0%
! GGATAAAGATGGTTTGGCTT+CGG - chr5_3:17915292-17915311 None:intergenic 40.0%
CTTGGAGGATAAAGATGGTT+TGG - chr5_3:17915298-17915317 None:intergenic 40.0%
CAAACCATCTTTATCCTCCA+AGG + chr5_3:17915296-17915315 Msa0802950:intron 40.0%
GAAACCTTGGAGGATAAAGA+TGG - chr5_3:17915303-17915322 None:intergenic 40.0%
TCTTTATCCTCCAAGGTTTC+AGG + chr5_3:17915303-17915322 Msa0802950:intron 40.0%
TTCGAAGAACGAGGATGAAT+GGG + chr5_3:17915335-17915354 Msa0802950:CDS 40.0%
GAAACGTGCTCTTGTTGATA+CGG + chr5_3:17915470-17915489 Msa0802950:CDS 40.0%
GCTCTTGTTGATACGGTTTA+TGG + chr5_3:17915477-17915496 Msa0802950:intron 40.0%
CGGAGCTTCTTAATGGAAAT+TGG + chr5_3:17915604-17915623 Msa0802950:CDS 40.0%
AAATCTCTGTATACCGGACA+GGG + chr5_3:17915844-17915863 Msa0802950:intron 40.0%
!! GCTGTTTTCACAAGCTATCT+TGG + chr5_3:17916171-17916190 Msa0802950:intron 40.0%
AAGTAAAGGCCTGTTTGGAT+TGG - chr5_3:17916321-17916340 None:intergenic 40.0%
ATGCAAAGTAAAGGCCTGTT+TGG - chr5_3:17916326-17916345 None:intergenic 40.0%
CTGAAAGATGATGAGGCAAA+AGG - chr5_3:17916612-17916631 None:intergenic 40.0%
AGATGCACTGAAAGATGATG+AGG - chr5_3:17916619-17916638 None:intergenic 40.0%
GAGAATACCTGTATTCTTGC+AGG - chr5_3:17916663-17916682 None:intergenic 40.0%
! TTCTAGCTGTCATGTGAAAG+AGG + chr5_3:17916730-17916749 Msa0802950:intron 40.0%
CGTCACAATCCTTGATATTG+TGG + chr5_3:17916862-17916881 Msa0802950:intron 40.0%
TGCAACTCTCCACAATATCA+AGG - chr5_3:17916874-17916893 None:intergenic 40.0%
CGTATAACCCATCTCATCTA+GGG - chr5_3:17917025-17917044 None:intergenic 40.0%
TCGTATAACCCATCTCATCT+AGG - chr5_3:17917026-17917045 None:intergenic 40.0%
ATGGAAAAGGTTGAGCACAA+AGG + chr5_3:17917309-17917328 Msa0802950:intron 40.0%
ATATCCCCACTAACTCTTAC+TGG + chr5_3:17917519-17917538 Msa0802950:intron 40.0%
TAGTCCAGTAAGAGTTAGTG+GGG - chr5_3:17917526-17917545 None:intergenic 40.0%
CTTAGTCCAGTAAGAGTTAG+TGG - chr5_3:17917528-17917547 None:intergenic 40.0%
CACTAACTCTTACTGGACTA+AGG + chr5_3:17917526-17917545 Msa0802950:intron 40.0%
! GTTGATAGGACTCTGTGTTT+GGG - chr5_3:17917552-17917571 None:intergenic 40.0%
! TGTTGATAGGACTCTGTGTT+TGG - chr5_3:17917553-17917572 None:intergenic 40.0%
AACACAGAGTCCTATCAACA+TGG + chr5_3:17917553-17917572 Msa0802950:intron 40.0%
!! GGAGTATTGATAGGACTTGT+GGG + chr5_3:17917591-17917610 Msa0802950:intron 40.0%
TTCCAAATTGCTGACCTATG+GGG - chr5_3:17917653-17917672 None:intergenic 40.0%
CTTTCCAAATTGCTGACCTA+TGG - chr5_3:17917655-17917674 None:intergenic 40.0%
! GGAAAGTGTATGTCAGGAAA+AGG + chr5_3:17917669-17917688 Msa0802950:intron 40.0%
AGTGTATGTCAGGAAAAGGA+AGG + chr5_3:17917673-17917692 Msa0802950:intron 40.0%
GTGTATGTCAGGAAAAGGAA+GGG + chr5_3:17917674-17917693 Msa0802950:intron 40.0%
TGTATGTCAGGAAAAGGAAG+GGG + chr5_3:17917675-17917694 Msa0802950:intron 40.0%
AGGTGGTAGGAATATTCTCT+AGG + chr5_3:17917727-17917746 Msa0802950:intron 40.0%
TGGTAGGAATATTCTCTAGG+TGG + chr5_3:17917730-17917749 Msa0802950:intron 40.0%
!! ACTCAACCGTTTAACTTGCT+AGG - chr5_3:17917969-17917988 None:intergenic 40.0%
! CATATTGCTCAAGGTACTAC+TGG + chr5_3:17918060-17918079 Msa0802950:intron 40.0%
! CTGGTTTGCATCTTTCTGAA+AGG + chr5_3:17918079-17918098 Msa0802950:intron 40.0%
ACTAAGGTAGTATGCCAGTA+GGG - chr5_3:17918133-17918152 None:intergenic 40.0%
AACTAAGGTAGTATGCCAGT+AGG - chr5_3:17918134-17918153 None:intergenic 40.0%
AAGGCACAACTAAGGAACTA+AGG - chr5_3:17918149-17918168 None:intergenic 40.0%
TAGTTCCTTAGTTGTGCCTT+TGG + chr5_3:17918149-17918168 Msa0802950:intron 40.0%
AGTTCCTTAGTTGTGCCTTT+GGG + chr5_3:17918150-17918169 Msa0802950:intron 40.0%
ATGTAGTCAAAGATGCCCAA+AGG - chr5_3:17918168-17918187 None:intergenic 40.0%
ATATTTGCATGACAGAGCAG+CGG - chr5_3:17918505-17918524 None:intergenic 40.0%
! TTTTGGCCAAAATCTTAGCC+TGG + chr5_3:17918746-17918765 Msa0802950:CDS 40.0%
TTTGGCCAAAATCTTAGCCT+GGG + chr5_3:17918747-17918766 Msa0802950:CDS 40.0%
CAAGTCCTTGTCAAGATATG+TGG - chr5_3:17918895-17918914 None:intergenic 40.0%
ACAAGGACTTGCGAATATCA+AGG + chr5_3:17918904-17918923 Msa0802950:CDS 40.0%
CAAGGACTTGCGAATATCAA+GGG + chr5_3:17918905-17918924 Msa0802950:CDS 40.0%
AAGGACTTGCGAATATCAAG+GGG + chr5_3:17918906-17918925 Msa0802950:CDS 40.0%
TGTTTGTCCTTGCAAGAGAA+GGG + chr5_3:17918940-17918959 Msa0802950:CDS 40.0%
CACCGATATCTCCGATGAAT+GGG + chr5_3:17915245-17915264 Msa0802950:CDS 45.0%
ACCGATATCTCCGATGAATG+GGG + chr5_3:17915246-17915265 Msa0802950:CDS 45.0%
ACCCCATTCATCGGAGATAT+CGG - chr5_3:17915250-17915269 None:intergenic 45.0%
GGATTTCTCACCCCATTCAT+CGG - chr5_3:17915259-17915278 None:intergenic 45.0%
!! ATCCTCCAAGGTTTCAGGTT+CGG + chr5_3:17915308-17915327 Msa0802950:intron 45.0%
CATTCATCCTCGTTCTTCGA+AGG - chr5_3:17915336-17915355 None:intergenic 45.0%
CTTCGAAGAACGAGGATGAA+TGG + chr5_3:17915334-17915353 Msa0802950:CDS 45.0%
TCGAAGAACGAGGATGAATG+GGG + chr5_3:17915336-17915355 Msa0802950:CDS 45.0%
AGCTATAGCGATGCTGGAAA+TGG + chr5_3:17915384-17915403 Msa0802950:CDS 45.0%
GAAATCTCTGTATACCGGAC+AGG + chr5_3:17915843-17915862 Msa0802950:intron 45.0%
AGAGTCTGACACGACACATT+TGG - chr5_3:17915936-17915955 None:intergenic 45.0%
!! AGCTCTATGTAGCACTGACA+CGG - chr5_3:17915962-17915981 None:intergenic 45.0%
!! AGGAGCATTACCTTTGGTGA+AGG + chr5_3:17916518-17916537 Msa0802950:CDS 45.0%
AGCATTACCTTTGGTGAAGG+TGG + chr5_3:17916521-17916540 Msa0802950:CDS 45.0%
GTTCACAACAGTGGAGCTAT+AGG - chr5_3:17916571-17916590 None:intergenic 45.0%
TGTCACAGAGTTCACAACAG+TGG - chr5_3:17916580-17916599 None:intergenic 45.0%
AGGGCTTCGAACTTCAAATG+AGG - chr5_3:17916643-17916662 None:intergenic 45.0%
GAGCAAACCTAGTAGGTGAA+AGG + chr5_3:17916762-17916781 Msa0802950:intron 45.0%
ATGTTGTGTTGTGATTGCGG+AGG + chr5_3:17916942-17916961 Msa0802950:intron 45.0%
TGAGCACAAAGGCTCTACAA+TGG + chr5_3:17917320-17917339 Msa0802950:intron 45.0%
AGTGTTCACACTTCACACTC+TGG - chr5_3:17917373-17917392 None:intergenic 45.0%
!! TAGAAGCATTGTGCTCTGGT+AGG - chr5_3:17917396-17917415 None:intergenic 45.0%
!! TGGTTAGAAGCATTGTGCTC+TGG - chr5_3:17917400-17917419 None:intergenic 45.0%
AGCACAATGCTTCTAACCAG+AGG + chr5_3:17917401-17917420 Msa0802950:intron 45.0%
GCACAATGCTTCTAACCAGA+GGG + chr5_3:17917402-17917421 Msa0802950:intron 45.0%
TGGTTAGTAGAGTTTCCCTC+TGG - chr5_3:17917420-17917439 None:intergenic 45.0%
TCACAAGCAGCCATGTTGAT+AGG - chr5_3:17917566-17917585 None:intergenic 45.0%
ATCAACATGGCTGCTTGTGA+CGG + chr5_3:17917566-17917585 Msa0802950:intron 45.0%
!! GGGAGTATTGATAGGACTTG+TGG + chr5_3:17917590-17917609 Msa0802950:intron 45.0%
TCCAAATTGCTGACCTATGG+GGG - chr5_3:17917652-17917671 None:intergenic 45.0%
GTATGTCAGGAAAAGGAAGG+GGG + chr5_3:17917676-17917695 Msa0802950:intron 45.0%
! GTTACATTTGGTGAGGTGGT+AGG + chr5_3:17917714-17917733 Msa0802950:intron 45.0%
TTATCTCTGGTAGGAGCCAT+AGG + chr5_3:17917832-17917851 Msa0802950:intron 45.0%
GGGAAAATATCCAGAGCCTA+TGG - chr5_3:17917851-17917870 None:intergenic 45.0%
!!! AGGCTCTGGATATTTTCCCT+TGG + chr5_3:17917852-17917871 Msa0802950:intron 45.0%
! TGTTGTTGTTCAGACGAGAC+AGG - chr5_3:17918036-17918055 None:intergenic 45.0%
TATTTGCATGACAGAGCAGC+GGG - chr5_3:17918504-17918523 None:intergenic 45.0%
TTGGCCAAAATCTTAGCCTG+GGG + chr5_3:17918748-17918767 Msa0802950:CDS 45.0%
CCAGGTATGGGAATCTTAAG+AGG - chr5_3:17918846-17918865 None:intergenic 45.0%
CCTCTTAAGATTCCCATACC+TGG + chr5_3:17918843-17918862 Msa0802950:CDS 45.0%
TTGCGAATATCAAGGGGAGA+TGG + chr5_3:17918912-17918931 Msa0802950:CDS 45.0%
CTGTTTGTCCTTGCAAGAGA+AGG + chr5_3:17918939-17918958 Msa0802950:CDS 45.0%
GAGTCCCCTTCTTGATTAGT+AGG + chr5_3:17918962-17918981 Msa0802950:exon 45.0%
! GTTCACCCCCTTATTAGCTT+AGG + chr5_3:17919231-17919250 Msa0802950:three_prime_UTR 45.0%
!!! AATAATAATATATATTGATT+TGG + chr5_3:17919257-17919276 Msa0802950:three_prime_UTR 5.0%
GATGAGAGGAACACGTAGTG+TGG - chr5_3:17915091-17915110 None:intergenic 50.0%
! GGGTTTTGCGAGAAGATGAG+AGG - chr5_3:17915105-17915124 None:intergenic 50.0%
GGGAGAGAAGAGAGAGAAGA+AGG - chr5_3:17915132-17915151 None:intergenic 50.0%
TGAAGCGGAGAGAAGGGAAT+CGG - chr5_3:17915185-17915204 None:intergenic 50.0%
TCATCGGAGATATCGGTGGA+TGG - chr5_3:17915243-17915262 None:intergenic 50.0%
CCATTCATCGGAGATATCGG+TGG - chr5_3:17915247-17915266 None:intergenic 50.0%
CCACCGATATCTCCGATGAA+TGG + chr5_3:17915244-17915263 Msa0802950:CDS 50.0%
! AGATGGTTTGGCTTCGGGTA+CGG - chr5_3:17915286-17915305 None:intergenic 50.0%
AACCGAACCTGAAACCTTGG+AGG - chr5_3:17915313-17915332 None:intergenic 50.0%
AGGAACCGAACCTGAAACCT+TGG - chr5_3:17915316-17915335 None:intergenic 50.0%
TTCGGTTCCTTCGAAGAACG+AGG + chr5_3:17915326-17915345 Msa0802950:CDS 50.0%
AACGAGGATGAATGGGGAGA+AGG + chr5_3:17915342-17915361 Msa0802950:CDS 50.0%
GAAGGAGCGAAAAATGACGC+CGG + chr5_3:17915360-17915379 Msa0802950:CDS 50.0%
AAGGAGCGAAAAATGACGCC+GGG + chr5_3:17915361-17915380 Msa0802950:CDS 50.0%
CGATGCTGGAAATGGAACTC+CGG + chr5_3:17915392-17915411 Msa0802950:CDS 50.0%
AGGAGGGAATGATGAGCTTG+AGG + chr5_3:17915443-17915462 Msa0802950:CDS 50.0%
GGAGGGAATGATGAGCTTGA+GGG + chr5_3:17915444-17915463 Msa0802950:CDS 50.0%
GAGGGAATGATGAGCTTGAG+GGG + chr5_3:17915445-17915464 Msa0802950:CDS 50.0%
ACGGTTTATGGGACTGAGCT+TGG + chr5_3:17915489-17915508 Msa0802950:intron 50.0%
CGGTTTATGGGACTGAGCTT+GGG + chr5_3:17915490-17915509 Msa0802950:intron 50.0%
! AGCTGAAGTGTCTGAGTTCG+TGG + chr5_3:17915536-17915555 Msa0802950:CDS 50.0%
GAGGAACCGGAGCTTCTTAA+TGG + chr5_3:17915597-17915616 Msa0802950:CDS 50.0%
!! GCTCTATGTAGCACTGACAC+GGG - chr5_3:17915961-17915980 None:intergenic 50.0%
AATGCTCCTGCTGCTAGAAG+AGG - chr5_3:17916507-17916526 None:intergenic 50.0%
!! AGCAGCAGGAGCATTACCTT+TGG + chr5_3:17916512-17916531 Msa0802950:CDS 50.0%
TCGAAGCCCTGCAAGAATAC+AGG + chr5_3:17916653-17916672 Msa0802950:CDS 50.0%
CACAAAGAGCCATGATGTCG+TGG + chr5_3:17916965-17916984 Msa0802950:intron 50.0%
CAAGTGTAGCCACGACATCA+TGG - chr5_3:17916977-17916996 None:intergenic 50.0%
GTGGCTACACTTGCAGTTGT+GGG + chr5_3:17916984-17917003 Msa0802950:intron 50.0%
CTCTTGGGAGCAACCAACTA+AGG - chr5_3:17917198-17917217 None:intergenic 50.0%
GCACAAAGGCTCTACAATGG+TGG + chr5_3:17917323-17917342 Msa0802950:intron 50.0%
!! GTGACGGAGGGAGTATTGAT+AGG + chr5_3:17917582-17917601 Msa0802950:intron 50.0%
GGTCAACACCAGTATCCACA+TGG - chr5_3:17917631-17917650 None:intergenic 50.0%
!! ATACTGGTGTTGACCCCCAT+AGG + chr5_3:17917636-17917655 Msa0802950:intron 50.0%
ACCCCCATAGGTCAGCAATT+TGG + chr5_3:17917648-17917667 Msa0802950:intron 50.0%
! GATGCCCAAAGGCACAACTA+AGG - chr5_3:17918157-17918176 None:intergenic 50.0%
CTTGCAACCACATTCTCCAG+AGG - chr5_3:17918795-17918814 None:intergenic 50.0%
AGATTCCCATACCTGGTGAG+AGG + chr5_3:17918850-17918869 Msa0802950:CDS 50.0%
CTTGTCCTCTCACCAGGTAT+GGG - chr5_3:17918858-17918877 None:intergenic 50.0%
CGAATATCAAGGGGAGATGG+CGG + chr5_3:17918915-17918934 Msa0802950:CDS 50.0%
GAATATCAAGGGGAGATGGC+GGG + chr5_3:17918916-17918935 Msa0802950:CDS 50.0%
!! TCACATTTTGGGTGGGCAGA+GGG - chr5_3:17919064-17919083 None:intergenic 50.0%
!! TTCACATTTTGGGTGGGCAG+AGG - chr5_3:17919065-17919084 None:intergenic 50.0%
CTGCCCACCCAAAATGTGAA+AGG + chr5_3:17919065-17919084 Msa0802950:three_prime_UTR 50.0%
GGGAGAGAGAGATTCGAGAG+GGG - chr5_3:17915152-17915171 None:intergenic 55.0%
GGGGAGAGAGAGATTCGAGA+GGG - chr5_3:17915153-17915172 None:intergenic 55.0%
AGGGGAGAGAGAGATTCGAG+AGG - chr5_3:17915154-17915173 None:intergenic 55.0%
AAGGGAATCGGTGAGAGCGA+GGG - chr5_3:17915173-17915192 None:intergenic 55.0%
CGGAGATGAAGCGGAGAGAA+GGG - chr5_3:17915191-17915210 None:intergenic 55.0%
! TTTGGCTTCGGGTACGGGTT+CGG - chr5_3:17915280-17915299 None:intergenic 55.0%
! GATGGTTTGGCTTCGGGTAC+GGG - chr5_3:17915285-17915304 None:intergenic 55.0%
TCCAGCATCGCTATAGCTCC+CGG - chr5_3:17915382-17915401 None:intergenic 55.0%
TCATTCCCTCCTTCCTCCAC+CGG - chr5_3:17915435-17915454 None:intergenic 55.0%
ACTGAGCTTGGGTTTCGAGC+TGG + chr5_3:17915501-17915520 Msa0802950:intron 55.0%
CTGAGCTTGGGTTTCGAGCT+GGG + chr5_3:17915502-17915521 Msa0802950:intron 55.0%
TGCTAACCCTACTCCAGCTC+CGG + chr5_3:17915572-17915591 Msa0802950:CDS 55.0%
AGAAGCTCCGGTTCCTCAAC+CGG - chr5_3:17915594-17915613 None:intergenic 55.0%
TGACGTCTCAATGCCCTGTC+CGG - chr5_3:17915860-17915879 None:intergenic 55.0%
CTGTTGCCTCTTCTAGCAGC+AGG + chr5_3:17916498-17916517 Msa0802950:CDS 55.0%
CGTGGCTACACTTGCAGTTG+TGG + chr5_3:17916983-17917002 Msa0802950:intron 55.0%
AACATGGCTGCTTGTGACGG+AGG + chr5_3:17917569-17917588 Msa0802950:intron 55.0%
! ACATGGCTGCTTGTGACGGA+GGG + chr5_3:17917570-17917589 Msa0802950:intron 55.0%
TCCACATGGAAGCCTGGATC+AGG - chr5_3:17917617-17917636 None:intergenic 55.0%
CCAGTATCCACATGGAAGCC+TGG - chr5_3:17917623-17917642 None:intergenic 55.0%
CCAGGCTTCCATGTGGATAC+TGG + chr5_3:17917620-17917639 Msa0802950:intron 55.0%
! AGGAAAAGGAAGGGGGTGCA+GGG + chr5_3:17917683-17917702 Msa0802950:intron 55.0%
GCAAGAGTTGCTGACCCTAC+TGG + chr5_3:17918116-17918135 Msa0802950:intron 55.0%
! GAGGCCCCAGGCTAAGATTT+TGG - chr5_3:17918755-17918774 None:intergenic 55.0%
GGGCCTCTGCAACAATCTCT+CGG + chr5_3:17918768-17918787 Msa0802950:CDS 55.0%
GGACCGAGAGATTGTTGCAG+AGG - chr5_3:17918774-17918793 None:intergenic 55.0%
GCAACAATCTCTCGGTCCTC+TGG + chr5_3:17918776-17918795 Msa0802950:CDS 55.0%
! TCTCGGTCCTCTGGAGAATG+TGG + chr5_3:17918785-17918804 Msa0802950:CDS 55.0%
GCTTGTCCTCTCACCAGGTA+TGG - chr5_3:17918859-17918878 None:intergenic 55.0%
CAAGAGCTTGTCCTCTCACC+AGG - chr5_3:17918864-17918883 None:intergenic 55.0%
CTGGTGAGAGGACAAGCTCT+TGG + chr5_3:17918862-17918881 Msa0802950:CDS 55.0%
TTGGGTGGGCAGAGGGAAAT+GGG - chr5_3:17919057-17919076 None:intergenic 55.0%
TTTGGGTGGGCAGAGGGAAA+TGG - chr5_3:17919058-17919077 None:intergenic 55.0%
AGGGAATCGGTGAGAGCGAG+GGG - chr5_3:17915172-17915191 None:intergenic 60.0%
GAAGGGAATCGGTGAGAGCG+AGG - chr5_3:17915174-17915193 None:intergenic 60.0%
GCGGAGATGAAGCGGAGAGA+AGG - chr5_3:17915192-17915211 None:intergenic 60.0%
GGAGCTTCGGAAGCAGAAGC+CGG - chr5_3:17915414-17915433 None:intergenic 60.0%
GGCTTCTGCTTCCGAAGCTC+CGG + chr5_3:17915413-17915432 Msa0802950:CDS 60.0%
TTCTGCTTCCGAAGCTCCGG+TGG + chr5_3:17915416-17915435 Msa0802950:CDS 60.0%
TCCTTCCTCCACCGGAGCTT+CGG - chr5_3:17915427-17915446 None:intergenic 60.0%
AAGCTCCGGTGGAGGAAGGA+GGG + chr5_3:17915427-17915446 Msa0802950:CDS 60.0%
GCTTGGGTTTCGAGCTGGGT+CGG + chr5_3:17915506-17915525 Msa0802950:intron 60.0%
GTCTGAGTTCGTGGCTCAGC+TGG + chr5_3:17915545-17915564 Msa0802950:CDS 60.0%
CCTCAACCGGAGCTGGAGTA+GGG - chr5_3:17915581-17915600 None:intergenic 60.0%
TCCTCAACCGGAGCTGGAGT+AGG - chr5_3:17915582-17915601 None:intergenic 60.0%
TCCAGCTCCGGTTGAGGAAC+CGG + chr5_3:17915584-17915603 Msa0802950:CDS 60.0%
AGGACTTGTGGGCCTGATCC+AGG + chr5_3:17917602-17917621 Msa0802950:intron 60.0%
GCCTGATCCAGGCTTCCATG+TGG + chr5_3:17917613-17917632 Msa0802950:intron 60.0%
! CAGGAAAAGGAAGGGGGTGC+AGG + chr5_3:17917682-17917701 Msa0802950:intron 60.0%
CTGGTAGGAGCCATAGGCTC+TGG + chr5_3:17917838-17917857 Msa0802950:intron 60.0%
GAGATTGTTGCAGAGGCCCC+AGG - chr5_3:17918767-17918786 None:intergenic 60.0%
GGGGACTCCCTTCTCTTGCA+AGG - chr5_3:17918950-17918969 None:intergenic 60.0%
TGGGTGGGCAGAGGGAAATG+GGG - chr5_3:17919056-17919075 None:intergenic 60.0%
CTCCGCTTCATCTCCGCCAC+CGG + chr5_3:17915195-17915214 Msa0802950:CDS 65.0%
ATCTCCGCCACCGGCGACAT+CGG + chr5_3:17915204-17915223 Msa0802950:CDS 65.0%
ATCAGCGTCGCCGATGTCGC+CGG - chr5_3:17915217-17915236 None:intergenic 65.0%
GCCGGGAGCTATAGCGATGC+TGG + chr5_3:17915378-17915397 Msa0802950:CDS 65.0%
TGCTTCCGAAGCTCCGGTGG+AGG + chr5_3:17915419-17915438 Msa0802950:CDS 65.0%
TCCGAAGCTCCGGTGGAGGA+AGG + chr5_3:17915423-17915442 Msa0802950:CDS 65.0%
GAAGCTCCGGTGGAGGAAGG+AGG + chr5_3:17915426-17915445 Msa0802950:CDS 65.0%
TGGGTTTCGAGCTGGGTCGG+AGG + chr5_3:17915509-17915528 Msa0802950:intron 65.0%
CCCTACTCCAGCTCCGGTTG+AGG + chr5_3:17915578-17915597 Msa0802950:CDS 65.0%
TCCGGTTCCTCAACCGGAGC+TGG - chr5_3:17915588-17915607 None:intergenic 65.0%
GTGGGCAGAGGGAAATGGGG+TGG - chr5_3:17919053-17919072 None:intergenic 65.0%
!! CGCCGGTGGCGGAGATGAAG+CGG - chr5_3:17915200-17915219 None:intergenic 70.0%
GTCGCCGATGTCGCCGGTGG+CGG - chr5_3:17915211-17915230 None:intergenic 75.0%
AGCGTCGCCGATGTCGCCGG+TGG - chr5_3:17915214-17915233 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 17915072 17919280 17915072 ID=Msa0802950;Name=Msa0802950
chr5_3 mRNA 17915072 17919280 17915072 ID=Msa0802950-mRNA-1;Parent=Msa0802950;Name=Msa0802950-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.4|1|0.25|0.4|5|300|331
chr5_3 exon 17915072 17915284 17915072 ID=Msa0802950-mRNA-1:exon:7340;Parent=Msa0802950-mRNA-1
chr5_3 exon 17915318 17915491 17915318 ID=Msa0802950-mRNA-1:exon:7341;Parent=Msa0802950-mRNA-1
chr5_3 exon 17915531 17915634 17915531 ID=Msa0802950-mRNA-1:exon:7342;Parent=Msa0802950-mRNA-1
chr5_3 exon 17916479 17916674 17916479 ID=Msa0802950-mRNA-1:exon:7343;Parent=Msa0802950-mRNA-1
chr5_3 exon 17918672 17919280 17918672 ID=Msa0802950-mRNA-1:exon:7344;Parent=Msa0802950-mRNA-1
chr5_3 CDS 17915072 17915284 17915072 ID=Msa0802950-mRNA-1:cds;Parent=Msa0802950-mRNA-1
chr5_3 CDS 17915318 17915491 17915318 ID=Msa0802950-mRNA-1:cds;Parent=Msa0802950-mRNA-1
chr5_3 CDS 17915531 17915634 17915531 ID=Msa0802950-mRNA-1:cds;Parent=Msa0802950-mRNA-1
chr5_3 CDS 17916479 17916674 17916479 ID=Msa0802950-mRNA-1:cds;Parent=Msa0802950-mRNA-1
chr5_3 CDS 17918672 17918980 17918672 ID=Msa0802950-mRNA-1:cds;Parent=Msa0802950-mRNA-1
chr5_3 three_prime_UTR 17918981 17919280 17918981 ID=Msa0802950-mRNA-1:three_prime_utr;Parent=Msa0802950-mRNA-1
Gene Sequence

>Msa0802950

ATGTCTCTTCTCTCTTCCACACTACGTGTTCCTCTCATCTTCTCGCAAAACCCTAAACCTTCTTCTCTCTCTTCTCTCCCCTCTCGAATCTCTCTCTCCCCTCGCTCTCACCGATTCCCTTCTCTCCGCTTCATCTCCGCCACCGGCGACATCGGCGACGCTGATATACCATCCACCGATATCTCCGATGAATGGGGTGAGAAATCCGAACCCGTTTCAGGTTCGGTTCCTTCGAAGAACGAGGATGAATGGGGAGAAGGAGCGAAAAATGACGCCGGGAGCTATAGCGATGCTGGAAATGGAACTCCGGCTTCTGCTTCCGAAGCTCCGGTGGAGGAAGGAGGGAATGATGAGCTTGAGGGGTTGAAACGTGCTCTTGTTGATACGGTTCGAGCTGAAGTGTCTGAGTTCGTGGCTCAGCTGGAAGCTGCTAACCCTACTCCAGCTCCGGTTGAGGAACCGGAGCTTCTTAATGGAAATTGGGTATTGCTGTACACAGCATCTTCTGAACTGTTGCCTCTTCTAGCAGCAGGAGCATTACCTTTGGTGAAGGTGGATAAAATCTTGCAAACAATTGATACCTATAGCTCCACTGTTGTGAACTCTGTGACATTGTCTAGCCCTTTTGCCTCATCATCTTTCAGTGCATCTGCCTCATTTGAAGTTCGAAGCCCTGCAAGAATACAGGTTACATTCAAAGAAGGATCACTACAGCCTCCAGAGATAAAGTCTAAAATTGACCTACCAGAAAACATAAACATTTTTGGCCAAAATCTTAGCCTGGGGCCTCTGCAACAATCTCTCGGTCCTCTGGAGAATGTGGTTGCAAGTATATCACGTGTCATTTCAGGTCAGTCACCTCTTAAGATTCCCATACCTGGTGAGAGGACAAGCTCTTGGCTTCTTACCACATATCTTGACAAGGACTTGCGAATATCAAGGGGAGATGGCGGGCTGTTTGTCCTTGCAAGAGAAGGGAGTCCCCTTCTTGATTAG

Protein sequence

>Msa0802950

MSLLSSTLRVPLIFSQNPKPSSLSSLPSRISLSPRSHRFPSLRFISATGDIGDADIPSTDISDEWGEKSEPVSGSVPSKNEDEWGEGAKNDAGSYSDAGNGTPASASEAPVEEGGNDELEGLKRALVDTVRAEVSEFVAQLEAANPTPAPVEEPELLNGNWVLLYTASSELLPLLAAGALPLVKVDKILQTIDTYSSTVVNSVTLSSPFASSSFSASASFEVRSPARIQVTFKEGSLQPPEIKSKIDLPENINIFGQNLSLGPLQQSLGPLENVVASISRVISGQSPLKIPIPGERTSSWLLTTYLDKDLRISRGDGGLFVLAREGSPLLD*