AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0950620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0950620 MtrunA17_Chr6g0466681 85.799 169 5 1 88 237 177 345 7.81e-99 291
Msa0950620 MtrunA17_Chr6g0466681 60.714 112 25 2 1 95 1 110 2.10e-35 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0950620 AT4G09750.1 69.048 168 33 1 88 236 154 321 1.31e-79 242
Msa0950620 AT4G09750.1 58.621 58 20 1 24 77 18 75 1.37e-14 72.0

Find 70 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATTACTTACAACATTTA+AGG 0.105302 6_3:-39239211 None:intergenic
GATATAACTGTCACTAATTT+TGG 0.108331 6_3:-39239258 None:intergenic
ACTTATTCGTATAGAGCTTT+AGG 0.234807 6_3:-39239324 None:intergenic
TCTATACGAATAAGTTTCTA+TGG 0.247318 6_3:+39239332 Msa0950620:three_prime_UTR
AATGAGAGATACAATGTTAA+AGG 0.263034 6_3:-39233372 None:intergenic
AGGTTGCACTAACAGAAAAT+TGG 0.277567 6_3:+39238395 Msa0950620:intron
CTAATTAATTACAGGCTTGC+AGG 0.288075 6_3:+39238847 Msa0950620:intron
GCATCTCTTTCGGCTTAAAT+AGG 0.294619 6_3:+39239054 Msa0950620:exon
ATCAAAAGATTAAAATAGTA+TGG 0.315953 6_3:+39239152 Msa0950620:three_prime_UTR
TCGATCCTTGGCATCTCTTT+CGG 0.317606 6_3:+39239044 Msa0950620:CDS
AGCATTAAATGAAAGGTGTT+TGG 0.325335 6_3:-39238977 None:intergenic
CACAGTTACCTGTAGATCTT+TGG 0.325674 6_3:-39237557 None:intergenic
CGTGTCATTACTGTTTCTTC+TGG 0.335143 6_3:+39237511 Msa0950620:CDS
TGAACTGATGGTACCATTAC+TGG 0.338898 6_3:+39237468 Msa0950620:CDS
TTAGGAAAATGTACACTTCA+TGG 0.364230 6_3:-39239306 None:intergenic
CCAGATACCAACTTCTCCTT+TGG 0.367870 6_3:-39238925 None:intergenic
AAGGCGCGGACACGGTTATC+TGG 0.368865 6_3:+39238890 Msa0950620:CDS
GGTTGCACTAACAGAAAATT+GGG 0.372940 6_3:+39238396 Msa0950620:intron
TGGCAATGCTATATTGAAAC+AGG 0.378565 6_3:-39239238 None:intergenic
CACTGATAGTCTTCGATCCT+TGG 0.380159 6_3:+39239032 Msa0950620:CDS
TCTCATTATGTTTCTTATCA+AGG 0.380949 6_3:+39233388 Msa0950620:CDS
CCAAAGGAGAAGTTGGTATC+TGG 0.391733 6_3:+39238925 Msa0950620:CDS
GCATTAAATGAAAGGTGTTT+GGG 0.399601 6_3:-39238976 None:intergenic
GGGAAGAATTGCATTGTAAC+AGG 0.410191 6_3:+39235871 Msa0950620:CDS
ATTTGTGTTTCTGTTTCCTC+TGG 0.412827 6_3:-39235844 None:intergenic
CCAGGTTGGGCTGACACTCC+TGG 0.413309 6_3:+39238463 Msa0950620:CDS
ACAGGAGCAAACTCTGGAAT+TGG 0.413799 6_3:+39235889 Msa0950620:CDS
ACAGTAATGACACGTGCATC+AGG 0.419282 6_3:-39237502 None:intergenic
TTACTCGATGCATCCAGGTT+GGG 0.430651 6_3:+39238450 Msa0950620:CDS
GTCATTACTGTTTCTTCTGG+TGG 0.452728 6_3:+39237514 Msa0950620:CDS
CTTTGTAGTTCAGTTTGAAT+CGG 0.453394 6_3:+39239107 Msa0950620:three_prime_UTR
TACTTCTACGCTAAACAGTA+AGG 0.463379 6_3:+39239082 Msa0950620:three_prime_UTR
TCCCTTGACCAAAGATCTAC+AGG 0.490363 6_3:+39237549 Msa0950620:CDS
GTGAAACATACAAGAACAAA+GGG 0.495041 6_3:+39238419 Msa0950620:CDS
AAGCTTAGAACAAGCGAAGA+AGG 0.497019 6_3:+39238871 Msa0950620:CDS
TTTACTCGATGCATCCAGGT+TGG 0.504519 6_3:+39238449 Msa0950620:CDS
GTTACAATGCAATTCTTCCC+TGG 0.509486 6_3:-39235868 None:intergenic
TGTCAAGGATATCAAGTCAA+TGG 0.525599 6_3:+39236585 Msa0950620:CDS
AATTGGTTATGCGGCAGCCG+AGG 0.526551 6_3:+39235906 Msa0950620:CDS
CCAGGAGTGTCAGCCCAACC+TGG 0.529866 6_3:-39238463 None:intergenic
ATTGGTTATGCGGCAGCCGA+GGG 0.531732 6_3:+39235907 Msa0950620:CDS
ACCTGTAGATCTTTGGTCAA+GGG 0.546962 6_3:-39237550 None:intergenic
CTTTCATTTAATGCTACAAG+TGG 0.547346 6_3:+39238985 Msa0950620:CDS
TAATTAATTACAGGCTTGCA+GGG 0.550954 6_3:+39238848 Msa0950620:intron
ATATCAAGTCAATGGCTTCG+AGG 0.552041 6_3:+39236593 Msa0950620:CDS
ACTACAACCAAAGGAGAAGT+TGG 0.556290 6_3:+39238918 Msa0950620:CDS
TTCTAAGAATTTCAAACCAG+AGG 0.557905 6_3:+39235828 Msa0950620:CDS
TTACGCCATGACTGAACTGA+TGG 0.563971 6_3:+39237456 Msa0950620:CDS
TACCTGTAGATCTTTGGTCA+AGG 0.568894 6_3:-39237551 None:intergenic
GAAACAGAAACACAAATACC+AGG 0.569965 6_3:+39235850 Msa0950620:CDS
TTGTGATCTGTCATCTGTCA+AGG 0.571689 6_3:+39236570 Msa0950620:CDS
CACTTGTAGCATTAAATGAA+AGG 0.577862 6_3:-39238984 None:intergenic
GGGGAAGCTTTCTCCAGTAA+TGG 0.579221 6_3:-39237481 None:intergenic
CTATACGAATAAGTTTCTAT+GGG 0.587873 6_3:+39239333 Msa0950620:three_prime_UTR
ATTGTAACAGGAGCAAACTC+TGG 0.588444 6_3:+39235883 Msa0950620:CDS
ACATACAAGAACAAAGGGAT+AGG 0.589492 6_3:+39238424 Msa0950620:CDS
AAGCGAAGAAGGCGCGGACA+CGG 0.590204 6_3:+39238882 Msa0950620:CDS
TTAAGCCGAAAGAGATGCCA+AGG 0.597074 6_3:-39239049 None:intergenic
CAGTAATGACACGTGCATCA+GGG 0.598705 6_3:-39237501 None:intergenic
TGGTACCATCAGTTCAGTCA+TGG 0.610823 6_3:-39237461 None:intergenic
AAACCGCTGTGCAAGACCCT+CGG 0.611055 6_3:-39235923 None:intergenic
CTGGTTGGCACTACAACCAA+AGG 0.614640 6_3:+39238909 Msa0950620:CDS
AGTAATGACACGTGCATCAG+GGG 0.621348 6_3:-39237500 None:intergenic
GGTGAAACATACAAGAACAA+AGG 0.631717 6_3:+39238418 Msa0950620:CDS
AAACAGAAACACAAATACCA+GGG 0.633281 6_3:+39235851 Msa0950620:CDS
TAGAACAAGCGAAGAAGGCG+CGG 0.636188 6_3:+39238876 Msa0950620:CDS
ACTTCTACGCTAAACAGTAA+GGG 0.646890 6_3:+39239083 Msa0950620:three_prime_UTR
CAGCCGAGGGTCTTGCACAG+CGG 0.674108 6_3:+39235920 Msa0950620:CDS
AAACTCTGGAATTGGTTATG+CGG 0.681764 6_3:+39235897 Msa0950620:CDS
GTTGCACTAACAGAAAATTG+GGG 0.760563 6_3:+39238397 Msa0950620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATTGTTATTGTTATT+AGG + chr6_3:39233807-39233826 Msa0950620:intron 10.0%
!! ATGATAATAATTATTGTTAT+TGG + chr6_3:39234463-39234482 Msa0950620:intron 10.0%
!!! AAGATAAAATTTTATACATA+AGG - chr6_3:39235796-39235815 None:intergenic 10.0%
!!! TTTATTTTCTTGAAATAAAA+TGG - chr6_3:39236922-39236941 None:intergenic 10.0%
!!! TCTTATTTATAAGAGATATT+TGG + chr6_3:39233623-39233642 Msa0950620:intron 15.0%
!! CTTATTTATAAGAGATATTT+GGG + chr6_3:39233624-39233643 Msa0950620:intron 15.0%
!! TCTTAAAAGATATATAATGA+TGG + chr6_3:39233774-39233793 Msa0950620:intron 15.0%
!! TAAGTACTAAAAACAATTTA+AGG + chr6_3:39234341-39234360 Msa0950620:intron 15.0%
!! AAGTACTAAAAACAATTTAA+GGG + chr6_3:39234342-39234361 Msa0950620:intron 15.0%
!! ATTATGCAATAAATATATAG+AGG + chr6_3:39234756-39234775 Msa0950620:intron 15.0%
!! TTCATATAATTCTTAGAATT+TGG - chr6_3:39235211-39235230 None:intergenic 15.0%
!!! TTTTGTTTGTTTATTTTGAT+TGG + chr6_3:39235555-39235574 Msa0950620:intron 15.0%
!!! TTATCTTTTGTTATAAAAAG+AGG + chr6_3:39236337-39236356 Msa0950620:intron 15.0%
!! AGTTTAATATAAAAAACTTG+CGG + chr6_3:39236871-39236890 Msa0950620:intron 15.0%
!!! AGATTTTCAAGAAAATAAAT+TGG - chr6_3:39236999-39237018 None:intergenic 15.0%
!!! ATTTTCTTGAAAATCTAATA+TGG + chr6_3:39237003-39237022 Msa0950620:intron 15.0%
!!! TACTATTTTAATCTTTTGAT+TGG - chr6_3:39239152-39239171 None:intergenic 15.0%
!! ATCAAAAGATTAAAATAGTA+TGG + chr6_3:39239152-39239171 Msa0950620:three_prime_UTR 15.0%
!!! ATTTTATGTTCCGTTTTTTA+TGG - chr6_3:39233308-39233327 None:intergenic 20.0%
!! GAACATAAAATGAAAAAAAG+TGG + chr6_3:39233317-39233336 Msa0950620:exon 20.0%
!! AATGAAATGTGAAATTGTTA+AGG - chr6_3:39233434-39233453 None:intergenic 20.0%
!!! GTAAAATAGTTGATTCAAAA+TGG - chr6_3:39233589-39233608 None:intergenic 20.0%
!! ATATCTCTTATAAATAAGAC+CGG - chr6_3:39233622-39233641 None:intergenic 20.0%
!!! ATAAAATTTGTTTTACCAAC+TGG + chr6_3:39233930-39233949 Msa0950620:intron 20.0%
!!! ATTTATATCTAGCTTTTTGT+TGG + chr6_3:39234086-39234105 Msa0950620:intron 20.0%
!!! TTTATATCTAGCTTTTTGTT+GGG + chr6_3:39234087-39234106 Msa0950620:intron 20.0%
!!! CTTTTAGACATTAAGTATAT+GGG - chr6_3:39234182-39234201 None:intergenic 20.0%
!!! ACTTTTAGACATTAAGTATA+TGG - chr6_3:39234183-39234202 None:intergenic 20.0%
!!! ACTTAATGTCTAAAAGTTTT+CGG + chr6_3:39234186-39234205 Msa0950620:intron 20.0%
!! AAAAGCTTATAAGATTGAAT+TGG + chr6_3:39235660-39235679 Msa0950620:intron 20.0%
!! TAAAGTAAGTAAATTCAAAC+AGG - chr6_3:39236159-39236178 None:intergenic 20.0%
!!! TAAAAAGTCTAATATGCTTT+TGG - chr6_3:39236442-39236461 None:intergenic 20.0%
!!! TTTTCACAATTTTGTTGATT+TGG + chr6_3:39236495-39236514 Msa0950620:intron 20.0%
!! GTTTAATATAAAAAACTTGC+GGG + chr6_3:39236872-39236891 Msa0950620:intron 20.0%
!! TATCAAATAGAAAACTATAG+AGG - chr6_3:39237231-39237250 None:intergenic 20.0%
!!! GTACTGATATTTTAAATTCA+AGG + chr6_3:39237728-39237747 Msa0950620:intron 20.0%
!!! ATGCAAATTTTGTGATATAT+TGG + chr6_3:39238365-39238384 Msa0950620:intron 20.0%
!!! AATAATCAATAGGTTTTCTA+CGG - chr6_3:39238549-39238568 None:intergenic 20.0%
!!! GAATGGTTTTAATAATCAAT+AGG - chr6_3:39238559-39238578 None:intergenic 20.0%
!! TTGATTATTAAAACCATTCA+TGG + chr6_3:39238560-39238579 Msa0950620:intron 20.0%
!! TGATTATTAAAACCATTCAT+GGG + chr6_3:39238561-39238580 Msa0950620:intron 20.0%
!! TCAATATTATAGTCTCATAA+TGG - chr6_3:39238676-39238695 None:intergenic 20.0%
!! ATGATTACTTACAACATTTA+AGG - chr6_3:39239214-39239233 None:intergenic 20.0%
!!! ACAGTTATATCAATTGTTTT+CGG + chr6_3:39239270-39239289 Msa0950620:three_prime_UTR 20.0%
! AATGAGAGATACAATGTTAA+AGG - chr6_3:39233375-39233394 None:intergenic 25.0%
! TCTCATTATGTTTCTTATCA+AGG + chr6_3:39233388-39233407 Msa0950620:CDS 25.0%
! ATCATTGAATTTCTTAAGTC+AGG + chr6_3:39233836-39233855 Msa0950620:intron 25.0%
! TAGAGCACAAATATCAATTT+AGG + chr6_3:39233885-39233904 Msa0950620:intron 25.0%
!! AGTTTAGTGTTGGATATATA+AGG + chr6_3:39234149-39234168 Msa0950620:intron 25.0%
!! GTTTAGTGTTGGATATATAA+GGG + chr6_3:39234150-39234169 Msa0950620:intron 25.0%
! ACATGTAGTGATTAAATAGT+GGG + chr6_3:39234303-39234322 Msa0950620:intron 25.0%
! CTGCTATATTATATTGTTCA+TGG + chr6_3:39234424-39234443 Msa0950620:intron 25.0%
! CAAAAATAGTTGCTATAAGT+TGG + chr6_3:39234516-39234535 Msa0950620:intron 25.0%
! CTTAAATCCAAGTTATAAGA+CGG + chr6_3:39234578-39234597 Msa0950620:intron 25.0%
! TGAGACTTATATAAGTTTGA+AGG + chr6_3:39234955-39234974 Msa0950620:intron 25.0%
! TTATATAAGTTTGAAGGATG+TGG + chr6_3:39234961-39234980 Msa0950620:intron 25.0%
! TTATATGAACTGAGTTATAG+TGG + chr6_3:39235222-39235241 Msa0950620:intron 25.0%
!! AAAGAAAAGGGAATGAATTT+TGG - chr6_3:39235310-39235329 None:intergenic 25.0%
!! TTTTAGACACTCAAAGAAAA+GGG - chr6_3:39235322-39235341 None:intergenic 25.0%
!! ATTTTAGACACTCAAAGAAA+AGG - chr6_3:39235323-39235342 None:intergenic 25.0%
! CACACACATTGTATTTATAA+TGG + chr6_3:39235384-39235403 Msa0950620:intron 25.0%
! AGAAGTAATAACAATCAATC+TGG + chr6_3:39235469-39235488 Msa0950620:intron 25.0%
! GAAGTAATAACAATCAATCT+GGG + chr6_3:39235470-39235489 Msa0950620:intron 25.0%
! AAAAGAAGAATGTAGAAAAG+TGG + chr6_3:39235754-39235773 Msa0950620:intron 25.0%
! AAAATTCCAGAAACAAACAT+CGG - chr6_3:39235960-39235979 None:intergenic 25.0%
! TGTAATTATATGCTAATCTG+TGG + chr6_3:39235992-39236011 Msa0950620:intron 25.0%
!!! TAATATGCTTTTGGTAGTTA+CGG - chr6_3:39236433-39236452 None:intergenic 25.0%
!!! GTATTCGGTTATTTCATTTT+TGG - chr6_3:39236743-39236762 None:intergenic 25.0%
! CATATCACAAAAAACTATAG+AGG + chr6_3:39237194-39237213 Msa0950620:intron 25.0%
!! TATTTGATAACACTTGATAG+TGG + chr6_3:39237242-39237261 Msa0950620:intron 25.0%
! CAACTAACTCAATCATTTAT+AGG + chr6_3:39237592-39237611 Msa0950620:intron 25.0%
! ATTGACAACATTAGTCATTA+TGG - chr6_3:39237986-39238005 None:intergenic 25.0%
!!! TATAATATTGATTTCGTAGC+AGG + chr6_3:39238685-39238704 Msa0950620:intron 25.0%
!!! ATAATATTGATTTCGTAGCA+GGG + chr6_3:39238686-39238705 Msa0950620:intron 25.0%
!!! GCATTTGATTTTTATTTCGT+GGG + chr6_3:39238708-39238727 Msa0950620:intron 25.0%
!!! CATTTGATTTTTATTTCGTG+GGG + chr6_3:39238709-39238728 Msa0950620:intron 25.0%
! GTACATAATCATTAGGATTT+AGG - chr6_3:39238823-39238842 None:intergenic 25.0%
!!! TTTGCAGTTTTTGTTTAGAT+CGG + chr6_3:39239176-39239195 Msa0950620:three_prime_UTR 25.0%
!! GATATAACTGTCACTAATTT+TGG - chr6_3:39239261-39239280 None:intergenic 25.0%
! TCTATACGAATAAGTTTCTA+TGG + chr6_3:39239332-39239351 Msa0950620:three_prime_UTR 25.0%
! CTATACGAATAAGTTTCTAT+GGG + chr6_3:39239333-39239352 Msa0950620:three_prime_UTR 25.0%
GAAATTACATACAGAAAAGC+AGG - chr6_3:39233554-39233573 None:intergenic 30.0%
! AAACCACATACATCAACTTT+TGG + chr6_3:39233681-39233700 Msa0950620:intron 30.0%
CCAACTTATAAGAGACATTT+CGG - chr6_3:39233732-39233751 None:intergenic 30.0%
CAATGTTTGAATTTCGATAG+AGG + chr6_3:39233998-39234017 Msa0950620:intron 30.0%
AACACTAAACTCATTCATAG+TGG - chr6_3:39234140-39234159 None:intergenic 30.0%
ACTATGAATGAGTTTAGTGT+TGG + chr6_3:39234139-39234158 Msa0950620:intron 30.0%
GACATGTAGTGATTAAATAG+TGG + chr6_3:39234302-39234321 Msa0950620:intron 30.0%
GTTGACTAATGATATGTGAT+AGG + chr6_3:39234492-39234511 Msa0950620:intron 30.0%
!! AACTCTCATTGACTAACTTT+TGG + chr6_3:39234543-39234562 Msa0950620:intron 30.0%
!! ACTCTCATTGACTAACTTTT+GGG + chr6_3:39234544-39234563 Msa0950620:intron 30.0%
GTAGGTATGAAGATGTTTAT+TGG + chr6_3:39234697-39234716 Msa0950620:intron 30.0%
!!! TCTATGTTTGTTTTGAACAC+TGG - chr6_3:39234737-39234756 None:intergenic 30.0%
TATAGAGGATCTTACAATGT+TGG + chr6_3:39234771-39234790 Msa0950620:intron 30.0%
TCAAGTCAGTATAATGATTG+AGG + chr6_3:39234887-39234906 Msa0950620:intron 30.0%
ATATCATCATCAATCAAGGT+AGG - chr6_3:39234936-39234955 None:intergenic 30.0%
TCTCATATCATCATCAATCA+AGG - chr6_3:39234940-39234959 None:intergenic 30.0%
TAACTACTTCACCATATTAC+TGG - chr6_3:39235027-39235046 None:intergenic 30.0%
AGTAATATGGTGAAGTAGTT+AGG + chr6_3:39235026-39235045 Msa0950620:intron 30.0%
AGATAAGCATCAAGAATTTG+AGG - chr6_3:39235250-39235269 None:intergenic 30.0%
CTTATCTTAGAACACAACAT+TGG + chr6_3:39235263-39235282 Msa0950620:intron 30.0%
! AAAGGGAATGAATTTTGGAT+TGG - chr6_3:39235305-39235324 None:intergenic 30.0%
! TTCTAAGAATTTCAAACCAG+AGG + chr6_3:39235828-39235847 Msa0950620:CDS 30.0%
AAACAGAAACACAAATACCA+GGG + chr6_3:39235851-39235870 Msa0950620:CDS 30.0%
AGAAACAAACATCGGAAAAA+AGG - chr6_3:39235952-39235971 None:intergenic 30.0%
!!! TTTTTTCCGATGTTTGTTTC+TGG + chr6_3:39235951-39235970 Msa0950620:intron 30.0%
CTATCTTGTATGTCGTAATA+AGG + chr6_3:39236044-39236063 Msa0950620:intron 30.0%
TGGCAATCAAAATGTGTATT+TGG + chr6_3:39236107-39236126 Msa0950620:intron 30.0%
CAATCAAAATGTGTATTTGG+AGG + chr6_3:39236110-39236129 Msa0950620:intron 30.0%
GAAACTGTTTACAGAACATA+TGG + chr6_3:39236205-39236224 Msa0950620:intron 30.0%
! CTTCAGATTAAAAGTGTGTT+CGG - chr6_3:39236807-39236826 None:intergenic 30.0%
!! ACACTTTTAATCTGAAGTGT+CGG + chr6_3:39236810-39236829 Msa0950620:intron 30.0%
TGCAATACAAATTTATCTGC+TGG + chr6_3:39236959-39236978 Msa0950620:intron 30.0%
TGGAACAATTTATTGCATCA+AGG + chr6_3:39237023-39237042 Msa0950620:intron 30.0%
! TGAGAACACTGATTATAAGA+CGG - chr6_3:39237170-39237189 None:intergenic 30.0%
ATCACAAAAAACTATAGAGG+CGG + chr6_3:39237197-39237216 Msa0950620:intron 30.0%
CAAATAGAAAACTATAGAGG+CGG - chr6_3:39237228-39237247 None:intergenic 30.0%
TTGTTTCGCAAAAAACGATT+TGG - chr6_3:39237268-39237287 None:intergenic 30.0%
! AACTTTGCTGTCAATGTATT+AGG + chr6_3:39237430-39237449 Msa0950620:intron 30.0%
ACAAAAAATTCGCATTGTAG+TGG + chr6_3:39237933-39237952 Msa0950620:intron 30.0%
GTGAAACATACAAGAACAAA+GGG + chr6_3:39238419-39238438 Msa0950620:CDS 30.0%
!! GGCATTTGATTTTTATTTCG+TGG + chr6_3:39238707-39238726 Msa0950620:intron 30.0%
AAGAATCTGACTTCAATTCT+TGG - chr6_3:39238761-39238780 None:intergenic 30.0%
TAGGTCAGTACATAATCATT+AGG - chr6_3:39238830-39238849 None:intergenic 30.0%
! GTACTGACCTAATTAATTAC+AGG + chr6_3:39238839-39238858 Msa0950620:intron 30.0%
TAATTAATTACAGGCTTGCA+GGG + chr6_3:39238848-39238867 Msa0950620:intron 30.0%
!! GCATTAAATGAAAGGTGTTT+GGG - chr6_3:39238979-39238998 None:intergenic 30.0%
!! AGCATTAAATGAAAGGTGTT+TGG - chr6_3:39238980-39238999 None:intergenic 30.0%
CACTTGTAGCATTAAATGAA+AGG - chr6_3:39238987-39239006 None:intergenic 30.0%
CTTTCATTTAATGCTACAAG+TGG + chr6_3:39238985-39239004 Msa0950620:CDS 30.0%
CTTTGTAGTTCAGTTTGAAT+CGG + chr6_3:39239107-39239126 Msa0950620:three_prime_UTR 30.0%
TTAGGAAAATGTACACTTCA+TGG - chr6_3:39239309-39239328 None:intergenic 30.0%
ACTTATTCGTATAGAGCTTT+AGG - chr6_3:39239327-39239346 None:intergenic 30.0%
CACACGTCAACCATAAAAAA+CGG + chr6_3:39233295-39233314 Msa0950620:five_prime_UTR 35.0%
GTTTGTGTTTCAAACAGACA+TGG + chr6_3:39233483-39233502 Msa0950620:intron 35.0%
!!! CAAACTGCTTTTGGTGTTTA+TGG + chr6_3:39233509-39233528 Msa0950620:intron 35.0%
! CTATTTTACTATCTCCTCTC+CGG + chr6_3:39233600-39233619 Msa0950620:intron 35.0%
TCTTATAAATAAGACCGGAG+AGG - chr6_3:39233617-39233636 None:intergenic 35.0%
! TGAACCAGATACATCCATTT+TGG - chr6_3:39233654-39233673 None:intergenic 35.0%
!! TCACCAAAAGTTGATGTATG+TGG - chr6_3:39233687-39233706 None:intergenic 35.0%
GTCAATAAAAGAGACATGTC+AGG - chr6_3:39233710-39233729 None:intergenic 35.0%
CCGAAATGTCTCTTATAAGT+TGG + chr6_3:39233729-39233748 Msa0950620:intron 35.0%
! ATGTCTCTTATAAGTTGGAC+CGG + chr6_3:39233734-39233753 Msa0950620:intron 35.0%
GAACTAATAAACACTCTCTC+CGG - chr6_3:39233756-39233775 None:intergenic 35.0%
!!! TTTGTTTTACCAACTGGAGT+TGG + chr6_3:39233936-39233955 Msa0950620:intron 35.0%
!! TTGTTTTACCAACTGGAGTT+GGG + chr6_3:39233937-39233956 Msa0950620:intron 35.0%
TTTATTGTCGTGCCAAGAAT+AGG + chr6_3:39234029-39234048 Msa0950620:intron 35.0%
AGGTTCACTAATCCTATTCT+TGG - chr6_3:39234044-39234063 None:intergenic 35.0%
! GAATAGGATTAGTGAACCTA+TGG + chr6_3:39234045-39234064 Msa0950620:intron 35.0%
ATTAGTGAACCTATGGCTAT+GGG + chr6_3:39234052-39234071 Msa0950620:intron 35.0%
!! AACTCATTCATAGTGGATGT+GGG - chr6_3:39234133-39234152 None:intergenic 35.0%
!! AAACTCATTCATAGTGGATG+TGG - chr6_3:39234134-39234153 None:intergenic 35.0%
! TAGTGTTGGATATATAAGGG+TGG + chr6_3:39234153-39234172 Msa0950620:intron 35.0%
ATCACTACATGTCTGAAAGT+GGG - chr6_3:39234295-39234314 None:intergenic 35.0%
AATCACTACATGTCTGAAAG+TGG - chr6_3:39234296-39234315 None:intergenic 35.0%
!! CTCTCATTGACTAACTTTTG+GGG + chr6_3:39234545-39234564 Msa0950620:intron 35.0%
TCTGATACCGTCTTATAACT+TGG - chr6_3:39234588-39234607 None:intergenic 35.0%
! AACATCTGGAACATGAAGTT+TGG - chr6_3:39234672-39234691 None:intergenic 35.0%
TGTTCCAGATGTTCAATAGT+AGG + chr6_3:39234679-39234698 Msa0950620:intron 35.0%
CATACCTACTATTGAACATC+TGG - chr6_3:39234686-39234705 None:intergenic 35.0%
! CTTACAATGTTGGTAGATTG+AGG + chr6_3:39234781-39234800 Msa0950620:intron 35.0%
TTGGTAGATTGAGGAAAGAA+AGG + chr6_3:39234790-39234809 Msa0950620:intron 35.0%
AGTCAGTATAATGATTGAGG+TGG + chr6_3:39234890-39234909 Msa0950620:intron 35.0%
GTGGATGAGAGGTTTAAAAA+GGG + chr6_3:39234909-39234928 Msa0950620:intron 35.0%
AAGTTTGAAGGATGTGGTAT+TGG + chr6_3:39234967-39234986 Msa0950620:intron 35.0%
AGTTTGAAGGATGTGGTATT+GGG + chr6_3:39234968-39234987 Msa0950620:intron 35.0%
AATATGGTGAAGTAGTTAGG+TGG + chr6_3:39235029-39235048 Msa0950620:intron 35.0%
ATTTCCAACCCCAAAATATG+TGG + chr6_3:39235060-39235079 Msa0950620:intron 35.0%
TTTCCAACCCCAAAATATGT+GGG + chr6_3:39235061-39235080 Msa0950620:intron 35.0%
! AATCGGATTCTAAGAATGCA+TGG + chr6_3:39235139-39235158 Msa0950620:intron 35.0%
! TAATTAGTAAGCACTAGCCT+AGG + chr6_3:39235432-39235451 Msa0950620:intron 35.0%
! TCTAGAGTATAGAACTTCCT+AGG - chr6_3:39235452-39235471 None:intergenic 35.0%
! ATTTGTGTTTCTGTTTCCTC+TGG - chr6_3:39235847-39235866 None:intergenic 35.0%
GAAACAGAAACACAAATACC+AGG + chr6_3:39235850-39235869 Msa0950620:CDS 35.0%
!! AAACTCTGGAATTGGTTATG+CGG + chr6_3:39235897-39235916 Msa0950620:CDS 35.0%
TCTCAAATTCAGACCAAAAC+TGG + chr6_3:39236087-39236106 Msa0950620:intron 35.0%
!!! CACATTTTGATTGCCAGTTT+TGG - chr6_3:39236103-39236122 None:intergenic 35.0%
! TATTGCCGCCAATTCTTTTA+GGG + chr6_3:39236133-39236152 Msa0950620:intron 35.0%
ACATTATCCTAGAGAGCTTA+TGG - chr6_3:39236276-39236295 None:intergenic 35.0%
TGTCAAGGATATCAAGTCAA+TGG + chr6_3:39236585-39236604 Msa0950620:CDS 35.0%
ATGAAACACTAACACATACG+CGG + chr6_3:39236685-39236704 Msa0950620:intron 35.0%
! GGACTTTTGTGTATTGCTTA+TGG + chr6_3:39236893-39236912 Msa0950620:intron 35.0%
TGTTCACTACAGGTAGAATT+GGG - chr6_3:39237136-39237155 None:intergenic 35.0%
ATGTTCACTACAGGTAGAAT+TGG - chr6_3:39237137-39237156 None:intergenic 35.0%
GATTTAGGCTAAACTATTGC+GGG - chr6_3:39237307-39237326 None:intergenic 35.0%
CGATTTAGGCTAAACTATTG+CGG - chr6_3:39237308-39237327 None:intergenic 35.0%
! GAGTTTACCTATTCTTTTCC+AGG + chr6_3:39237398-39237417 Msa0950620:intron 35.0%
ACTCAAACCTGGAAAAGAAT+AGG - chr6_3:39237408-39237427 None:intergenic 35.0%
! TATTCTGAGAGCAGCTTTAA+TGG + chr6_3:39237649-39237668 Msa0950620:intron 35.0%
! ATTCTGAGAGCAGCTTTAAT+GGG + chr6_3:39237650-39237669 Msa0950620:intron 35.0%
CATCAATAGCTATGAAACAC+TGG - chr6_3:39237865-39237884 None:intergenic 35.0%
TTGTATCACTATTCAGTCAC+AGG - chr6_3:39238046-39238065 None:intergenic 35.0%
TTGAATAGAGGTTAGGACTT+AGG + chr6_3:39238285-39238304 Msa0950620:intron 35.0%
TGTGATATATTGGAAATGCC+AGG + chr6_3:39238375-39238394 Msa0950620:intron 35.0%
! AATTTTCTGTTAGTGCAACC+TGG - chr6_3:39238396-39238415 None:intergenic 35.0%
AGGTTGCACTAACAGAAAAT+TGG + chr6_3:39238395-39238414 Msa0950620:intron 35.0%
GGTTGCACTAACAGAAAATT+GGG + chr6_3:39238396-39238415 Msa0950620:intron 35.0%
GTTGCACTAACAGAAAATTG+GGG + chr6_3:39238397-39238416 Msa0950620:CDS 35.0%
GGTGAAACATACAAGAACAA+AGG + chr6_3:39238418-39238437 Msa0950620:CDS 35.0%
ACATACAAGAACAAAGGGAT+AGG + chr6_3:39238424-39238443 Msa0950620:CDS 35.0%
! GTTTTCTACGGATGATGTTA+AGG - chr6_3:39238537-39238556 None:intergenic 35.0%
!! AGTCTCATAATGGACTCAAA+GGG - chr6_3:39238666-39238685 None:intergenic 35.0%
!! TAGTCTCATAATGGACTCAA+AGG - chr6_3:39238667-39238686 None:intergenic 35.0%
!! TGATTTTTATTTCGTGGGGA+TGG + chr6_3:39238713-39238732 Msa0950620:intron 35.0%
ATTCTTGGAGTCGTGTATTT+GGG - chr6_3:39238746-39238765 None:intergenic 35.0%
AATTCTTGGAGTCGTGTATT+TGG - chr6_3:39238747-39238766 None:intergenic 35.0%
! TTGAAGTCAGATTCTTTTCG+TGG + chr6_3:39238765-39238784 Msa0950620:intron 35.0%
! TGAAGTCAGATTCTTTTCGT+GGG + chr6_3:39238766-39238785 Msa0950620:intron 35.0%
CTGCAAGCCTGTAATTAATT+AGG - chr6_3:39238849-39238868 None:intergenic 35.0%
CTAATTAATTACAGGCTTGC+AGG + chr6_3:39238847-39238866 Msa0950620:intron 35.0%
TACTTCTACGCTAAACAGTA+AGG + chr6_3:39239082-39239101 Msa0950620:three_prime_UTR 35.0%
ACTTCTACGCTAAACAGTAA+GGG + chr6_3:39239083-39239102 Msa0950620:three_prime_UTR 35.0%
TGGCAATGCTATATTGAAAC+AGG - chr6_3:39239241-39239260 None:intergenic 35.0%
! ACATGGAGACAAACTGCTTT+TGG + chr6_3:39233500-39233519 Msa0950620:intron 40.0%
GATATTTGGGTCGACCAAAA+TGG + chr6_3:39233637-39233656 Msa0950620:intron 40.0%
TCGACCAAAATGGATGTATC+TGG + chr6_3:39233647-39233666 Msa0950620:intron 40.0%
! TGTTTTACCAACTGGAGTTG+GGG + chr6_3:39233938-39233957 Msa0950620:intron 40.0%
!! ATTGATTCGTCACGTTGTAC+AGG - chr6_3:39233982-39234001 None:intergenic 40.0%
GATTAGTGAACCTATGGCTA+TGG + chr6_3:39234051-39234070 Msa0950620:intron 40.0%
! GTTTTTGTTCCCATAGCCAT+AGG - chr6_3:39234064-39234083 None:intergenic 40.0%
TTGTTGGGTTTAAGTGTGAC+CGG + chr6_3:39234102-39234121 Msa0950620:intron 40.0%
TCTATGGGTGGACAATTAAC+AGG - chr6_3:39234638-39234657 None:intergenic 40.0%
ATTGTCCACCCATAGATGTT+CGG + chr6_3:39234642-39234661 Msa0950620:intron 40.0%
! ATCTGGAACATGAAGTTTGG+AGG - chr6_3:39234669-39234688 None:intergenic 40.0%
ATTGGACATCATCGATGTCA+TGG - chr6_3:39234836-39234855 None:intergenic 40.0%
ATGACATCGATGATGTCCAA+TGG + chr6_3:39234835-39234854 Msa0950620:intron 40.0%
!! CATTATACTGACTTGAGCGT+TGG - chr6_3:39234883-39234902 None:intergenic 40.0%
TAATGATTGAGGTGGATGAG+AGG + chr6_3:39234898-39234917 Msa0950620:intron 40.0%
GGTGGATGAGAGGTTTAAAA+AGG + chr6_3:39234908-39234927 Msa0950620:intron 40.0%
! AAGGATGTGGTATTGGGATT+CGG + chr6_3:39234974-39234993 Msa0950620:intron 40.0%
! TATTACTGGTTGTTCCGAAG+TGG - chr6_3:39235013-39235032 None:intergenic 40.0%
CTTCGGAACAACCAGTAATA+TGG + chr6_3:39235013-39235032 Msa0950620:intron 40.0%
! AAGTCCGACCCACATATTTT+GGG - chr6_3:39235072-39235091 None:intergenic 40.0%
! AATATCTGGAGCATGAGGTT+TGG - chr6_3:39235095-39235114 None:intergenic 40.0%
CACACATAGGACTGAATATC+TGG - chr6_3:39235109-39235128 None:intergenic 40.0%
TATTCAGTCCTATGTGTGTG+AGG + chr6_3:39235111-39235130 Msa0950620:intron 40.0%
CAGTTATCGCCATGAAACTA+GGG - chr6_3:39235699-39235718 None:intergenic 40.0%
GTTACAATGCAATTCTTCCC+TGG - chr6_3:39235871-39235890 None:intergenic 40.0%
GGGAAGAATTGCATTGTAAC+AGG + chr6_3:39235871-39235890 Msa0950620:CDS 40.0%
ATTGTAACAGGAGCAAACTC+TGG + chr6_3:39235883-39235902 Msa0950620:CDS 40.0%
AAGATAGACATTTGCACCAC+TGG - chr6_3:39236031-39236050 None:intergenic 40.0%
GTATGTCGTAATAAGGAGAG+AGG + chr6_3:39236051-39236070 Msa0950620:intron 40.0%
! GTATTGCCGCCAATTCTTTT+AGG + chr6_3:39236132-39236151 Msa0950620:intron 40.0%
CAAACAGGCCCTAAAAGAAT+TGG - chr6_3:39236144-39236163 None:intergenic 40.0%
CCTAGAGAGCTTATGGAAAT+CGG - chr6_3:39236269-39236288 None:intergenic 40.0%
!! TTGGTAGTTACGGTCTTGTT+TGG - chr6_3:39236423-39236442 None:intergenic 40.0%
TTGTGATCTGTCATCTGTCA+AGG + chr6_3:39236570-39236589 Msa0950620:CDS 40.0%
ATATCAAGTCAATGGCTTCG+AGG + chr6_3:39236593-39236612 Msa0950620:CDS 40.0%
! GTGCACTGGAACATTCTTTT+CGG - chr6_3:39236623-39236642 None:intergenic 40.0%
TAATTTACCAACACGTGCAC+TGG - chr6_3:39236637-39236656 None:intergenic 40.0%
CTGAGACATGCAGTTGTATT+CGG - chr6_3:39236758-39236777 None:intergenic 40.0%
TGCATCAAGGTTAACAATGC+TGG + chr6_3:39237036-39237055 Msa0950620:intron 40.0%
AAATCGAGTTACCACATCAG+AGG + chr6_3:39237071-39237090 Msa0950620:intron 40.0%
AATCGAGTTACCACATCAGA+GGG + chr6_3:39237072-39237091 Msa0950620:intron 40.0%
GTTCACTACAGGTAGAATTG+GGG - chr6_3:39237135-39237154 None:intergenic 40.0%
AGCAGATCAATGTTCACTAC+AGG - chr6_3:39237146-39237165 None:intergenic 40.0%
CATTTCGCGAAACACGATTT+AGG - chr6_3:39237322-39237341 None:intergenic 40.0%
! GATAGTGGCTATAGCATAGT+GGG - chr6_3:39237362-39237381 None:intergenic 40.0%
!! TGATAGTGGCTATAGCATAG+TGG - chr6_3:39237363-39237382 None:intergenic 40.0%
TAGCCACTATCAGACAAAAC+TGG + chr6_3:39237371-39237390 Msa0950620:intron 40.0%
!! AGACCAGTTTTGTCTGATAG+TGG - chr6_3:39237377-39237396 None:intergenic 40.0%
AGCAAAGTTCAACTCAAACC+TGG - chr6_3:39237419-39237438 None:intergenic 40.0%
TGAACTGATGGTACCATTAC+TGG + chr6_3:39237468-39237487 Msa0950620:CDS 40.0%
! CGTGTCATTACTGTTTCTTC+TGG + chr6_3:39237511-39237530 Msa0950620:CDS 40.0%
! GTCATTACTGTTTCTTCTGG+TGG + chr6_3:39237514-39237533 Msa0950620:CDS 40.0%
ACCTGTAGATCTTTGGTCAA+GGG - chr6_3:39237553-39237572 None:intergenic 40.0%
TACCTGTAGATCTTTGGTCA+AGG - chr6_3:39237554-39237573 None:intergenic 40.0%
CACAGTTACCTGTAGATCTT+TGG - chr6_3:39237560-39237579 None:intergenic 40.0%
TAAAGCTGCTCTCAGAATAC+TGG - chr6_3:39237648-39237667 None:intergenic 40.0%
CTTGTTTCGAGCATACTGTA+AGG - chr6_3:39237677-39237696 None:intergenic 40.0%
ATAGCTATGAAACACTGGCA+CGG - chr6_3:39237860-39237879 None:intergenic 40.0%
AAGCTGTTAAACCAAGCCTT+AGG + chr6_3:39238120-39238139 Msa0950620:intron 40.0%
! TCAATTAGTCTCCTAAGGCT+TGG - chr6_3:39238134-39238153 None:intergenic 40.0%
AAGCCTTAGGAGACTAATTG+AGG + chr6_3:39238133-39238152 Msa0950620:intron 40.0%
! CAACCTCAATTAGTCTCCTA+AGG - chr6_3:39238139-39238158 None:intergenic 40.0%
TTCCTACATTTGTAACTCGG+GGG - chr6_3:39238203-39238222 None:intergenic 40.0%
CTTCCTACATTTGTAACTCG+GGG - chr6_3:39238204-39238223 None:intergenic 40.0%
CCTTCCTACATTTGTAACTC+GGG - chr6_3:39238205-39238224 None:intergenic 40.0%
CCCTTCCTACATTTGTAACT+CGG - chr6_3:39238206-39238225 None:intergenic 40.0%
CCGAGTTACAAATGTAGGAA+GGG + chr6_3:39238203-39238222 Msa0950620:intron 40.0%
CGAGTTACAAATGTAGGAAG+GGG + chr6_3:39238204-39238223 Msa0950620:intron 40.0%
!! ACTTACGATTTTGAGAAGCC+TGG - chr6_3:39238505-39238524 None:intergenic 40.0%
CTATGTCGTGGGATACTTTA+GGG - chr6_3:39238642-39238661 None:intergenic 40.0%
TCTATGTCGTGGGATACTTT+AGG - chr6_3:39238643-39238662 None:intergenic 40.0%
! GAAGTCAGATTCTTTTCGTG+GGG + chr6_3:39238767-39238786 Msa0950620:intron 40.0%
AAGCTTAGAACAAGCGAAGA+AGG + chr6_3:39238871-39238890 Msa0950620:CDS 40.0%
ACTACAACCAAAGGAGAAGT+TGG + chr6_3:39238918-39238937 Msa0950620:CDS 40.0%
GCATCTCTTTCGGCTTAAAT+AGG + chr6_3:39239054-39239073 Msa0950620:exon 40.0%
TGCTCCATAACCACAAGAGA+GGG - chr6_3:39234228-39234247 None:intergenic 45.0%
ATGCTCCATAACCACAAGAG+AGG - chr6_3:39234229-39234248 None:intergenic 45.0%
GTCTGAAAGTGGGAATGTTG+TGG - chr6_3:39234285-39234304 None:intergenic 45.0%
TTGGAGGACCGAACATCTAT+GGG - chr6_3:39234653-39234672 None:intergenic 45.0%
TTTGGAGGACCGAACATCTA+TGG - chr6_3:39234654-39234673 None:intergenic 45.0%
GGAAAGAAAGGTTCTGTGTG+TGG + chr6_3:39234802-39234821 Msa0950620:intron 45.0%
ACATCGATGATGTCCAATGG+TGG + chr6_3:39234838-39234857 Msa0950620:intron 45.0%
CATCGATGATGTCCAATGGT+GGG + chr6_3:39234839-39234858 Msa0950620:intron 45.0%
ATCGATGATGTCCAATGGTG+GGG + chr6_3:39234840-39234859 Msa0950620:intron 45.0%
! AGGATGTGGTATTGGGATTC+GGG + chr6_3:39234975-39234994 Msa0950620:intron 45.0%
! GGAAGCACAAAAGTCCACTT+CGG + chr6_3:39234996-39235015 Msa0950620:intron 45.0%
CAACCCCAAAATATGTGGGT+CGG + chr6_3:39235065-39235084 Msa0950620:intron 45.0%
! AGTCCGACCCACATATTTTG+GGG - chr6_3:39235071-39235090 None:intergenic 45.0%
! GAAGTCCGACCCACATATTT+TGG - chr6_3:39235073-39235092 None:intergenic 45.0%
! GACTGAATATCTGGAGCATG+AGG - chr6_3:39235100-39235119 None:intergenic 45.0%
ATTCACCACCTCACACACAT+AGG - chr6_3:39235122-39235141 None:intergenic 45.0%
ATGTGTGTGAGGTGGTGAAT+CGG + chr6_3:39235122-39235141 Msa0950620:intron 45.0%
CCAAAAGCTAGATTGTGGGA+GGG - chr6_3:39235169-39235188 None:intergenic 45.0%
!!! CCTCCCACAATCTAGCTTTT+GGG + chr6_3:39235167-39235186 Msa0950620:intron 45.0%
!!! CTCCCACAATCTAGCTTTTG+GGG + chr6_3:39235168-39235187 Msa0950620:intron 45.0%
GACCCCAAAAGCTAGATTGT+GGG - chr6_3:39235173-39235192 None:intergenic 45.0%
TGTGACTGACCCTAGTTTCA+TGG + chr6_3:39235687-39235706 Msa0950620:intron 45.0%
GCAGTTATCGCCATGAAACT+AGG - chr6_3:39235700-39235719 None:intergenic 45.0%
!! ACAGGAGCAAACTCTGGAAT+TGG + chr6_3:39235889-39235908 Msa0950620:CDS 45.0%
! TGGTTAGTGATTTTCGCCAG+TGG + chr6_3:39236012-39236031 Msa0950620:intron 45.0%
TCGTAATAAGGAGAGAGGAG+AGG + chr6_3:39236056-39236075 Msa0950620:intron 45.0%
ACAGGCCCTAAAAGAATTGG+CGG - chr6_3:39236141-39236160 None:intergenic 45.0%
CCGATTTCCATAAGCTCTCT+AGG + chr6_3:39236266-39236285 Msa0950620:intron 45.0%
ACAACTGCATGTCTCAGTGT+TGG + chr6_3:39236761-39236780 Msa0950620:intron 45.0%
TGTTGGACACTAACACGTGT+AGG + chr6_3:39236778-39236797 Msa0950620:intron 45.0%
ATCGAGTTACCACATCAGAG+GGG + chr6_3:39237073-39237092 Msa0950620:intron 45.0%
TTACGCCATGACTGAACTGA+TGG + chr6_3:39237456-39237475 Msa0950620:CDS 45.0%
TGGTACCATCAGTTCAGTCA+TGG - chr6_3:39237464-39237483 None:intergenic 45.0%
AGTAATGACACGTGCATCAG+GGG - chr6_3:39237503-39237522 None:intergenic 45.0%
CAGTAATGACACGTGCATCA+GGG - chr6_3:39237504-39237523 None:intergenic 45.0%
ACAGTAATGACACGTGCATC+AGG - chr6_3:39237505-39237524 None:intergenic 45.0%
TCCCTTGACCAAAGATCTAC+AGG + chr6_3:39237549-39237568 Msa0950620:CDS 45.0%
GTAACCATCTGTGTCAGTGT+CGG - chr6_3:39237774-39237793 None:intergenic 45.0%
TTCCCCCGAGTTACAAATGT+AGG + chr6_3:39238198-39238217 Msa0950620:intron 45.0%
CCCGAGTTACAAATGTAGGA+AGG + chr6_3:39238202-39238221 Msa0950620:intron 45.0%
GGAAGGGGTTTAAATTGTGC+AGG + chr6_3:39238219-39238238 Msa0950620:intron 45.0%
! GGATTTTACTCGATGCATCC+AGG + chr6_3:39238445-39238464 Msa0950620:CDS 45.0%
TTTACTCGATGCATCCAGGT+TGG + chr6_3:39238449-39238468 Msa0950620:CDS 45.0%
TTACTCGATGCATCCAGGTT+GGG + chr6_3:39238450-39238469 Msa0950620:CDS 45.0%
! GGCAAACTTTTTGCAACACC+AGG - chr6_3:39238484-39238503 None:intergenic 45.0%
! GGTGTTGCAAAAAGTTTGCC+AGG + chr6_3:39238484-39238503 Msa0950620:CDS 45.0%
AGACGCTTTCTTCCCATGAA+TGG - chr6_3:39238576-39238595 None:intergenic 45.0%
ACTCAAAGGGTCTATGTCGT+GGG - chr6_3:39238653-39238672 None:intergenic 45.0%
! TCAGATTCTTTTCGTGGGGA+TGG + chr6_3:39238771-39238790 Msa0950620:intron 45.0%
CCAGATACCAACTTCTCCTT+TGG - chr6_3:39238928-39238947 None:intergenic 45.0%
!! CCAAAGGAGAAGTTGGTATC+TGG + chr6_3:39238925-39238944 Msa0950620:CDS 45.0%
CACTGATAGTCTTCGATCCT+TGG + chr6_3:39239032-39239051 Msa0950620:CDS 45.0%
TCGATCCTTGGCATCTCTTT+CGG + chr6_3:39239044-39239063 Msa0950620:CDS 45.0%
TTAAGCCGAAAGAGATGCCA+AGG - chr6_3:39239052-39239071 None:intergenic 45.0%
TGGAGTTGGGGTCAGTTGAA+GGG + chr6_3:39233950-39233969 Msa0950620:intron 50.0%
TGGGTTTAAGTGTGACCGGT+TGG + chr6_3:39234106-39234125 Msa0950620:intron 50.0%
!! ATAGTGGATGTGGGACCAAC+CGG - chr6_3:39234124-39234143 None:intergenic 50.0%
GTCTCCCTCTCTTGTGGTTA+TGG + chr6_3:39234221-39234240 Msa0950620:intron 50.0%
! GCATTGACCTGTGTTGCTCT+CGG + chr6_3:39234245-39234264 Msa0950620:intron 50.0%
! CATTGACCTGTGTTGCTCTC+GGG + chr6_3:39234246-39234265 Msa0950620:intron 50.0%
! ATTGACCTGTGTTGCTCTCG+GGG + chr6_3:39234247-39234266 Msa0950620:intron 50.0%
TCGATGATGTCCAATGGTGG+GGG + chr6_3:39234841-39234860 Msa0950620:intron 50.0%
!!! CGACCCACATATTTTGGGGT+TGG - chr6_3:39235067-39235086 None:intergenic 50.0%
TCAGTCCTATGTGTGTGAGG+TGG + chr6_3:39235114-39235133 Msa0950620:intron 50.0%
!!! CCCTCCCACAATCTAGCTTT+TGG + chr6_3:39235166-39235185 Msa0950620:intron 50.0%
CCCAAAAGCTAGATTGTGGG+AGG - chr6_3:39235170-39235189 None:intergenic 50.0%
CGACCCCAAAAGCTAGATTG+TGG - chr6_3:39235174-39235193 None:intergenic 50.0%
GAATGTTCCAGTGCACGTGT+TGG + chr6_3:39236627-39236646 Msa0950620:intron 50.0%
AAAGACTCACCCCTCTGATG+TGG - chr6_3:39237085-39237104 None:intergenic 50.0%
GGGGAAGCTTTCTCCAGTAA+TGG - chr6_3:39237484-39237503 None:intergenic 50.0%
TGCTCGAAACAAGCGTGTTC+AGG + chr6_3:39237684-39237703 Msa0950620:intron 50.0%
! AGTGTCGGATACTCGGATAC+TGG - chr6_3:39237759-39237778 None:intergenic 50.0%
! CTGTGTCAGTGTCGGATACT+CGG - chr6_3:39237766-39237785 None:intergenic 50.0%
GTATCCGACACTGACACAGA+TGG + chr6_3:39237767-39237786 Msa0950620:intron 50.0%
GACTCAAAGGGTCTATGTCG+TGG - chr6_3:39238654-39238673 None:intergenic 50.0%
CTTGGAGTCGTGTATTTGGG+AGG - chr6_3:39238743-39238762 None:intergenic 50.0%
! TTAGGATTTAGGACCACCCC+TGG - chr6_3:39238812-39238831 None:intergenic 50.0%
TAGAACAAGCGAAGAAGGCG+CGG + chr6_3:39238876-39238895 Msa0950620:CDS 50.0%
CTGGTTGGCACTACAACCAA+AGG + chr6_3:39238909-39238928 Msa0950620:CDS 50.0%
CAACTGACCCCAACTCCAGT+TGG - chr6_3:39233948-39233967 None:intergenic 55.0%
CTGGAGTTGGGGTCAGTTGA+AGG + chr6_3:39233949-39233968 Msa0950620:intron 55.0%
GGAGTTGGGGTCAGTTGAAG+GGG + chr6_3:39233951-39233970 Msa0950620:intron 55.0%
TGTTGCGTCTCCCTCTCTTG+TGG + chr6_3:39234215-39234234 Msa0950620:intron 55.0%
GGGAATGTTGTGGAGACCGA+GGG - chr6_3:39234275-39234294 None:intergenic 55.0%
TGGGAATGTTGTGGAGACCG+AGG - chr6_3:39234276-39234295 None:intergenic 55.0%
GAGGACCGAACATCTATGGG+TGG - chr6_3:39234650-39234669 None:intergenic 55.0%
! TGGAAGTACACCCCCACCAT+TGG - chr6_3:39234854-39234873 None:intergenic 55.0%
!! GACTTGAGCGTTGGAGTGCA+TGG - chr6_3:39234874-39234893 None:intergenic 55.0%
AATTGGTTATGCGGCAGCCG+AGG + chr6_3:39235906-39235925 Msa0950620:CDS 55.0%
ATTGGTTATGCGGCAGCCGA+GGG + chr6_3:39235907-39235926 Msa0950620:CDS 55.0%
AAACCGCTGTGCAAGACCCT+CGG - chr6_3:39235926-39235945 None:intergenic 55.0%
GTAACTCGGGGGAATCTTCG+AGG - chr6_3:39238192-39238211 None:intergenic 55.0%
TGGTCTACCTCCCACTTACC+AGG + chr6_3:39238791-39238810 Msa0950620:intron 55.0%
GGTCTACCTCCCACTTACCA+GGG + chr6_3:39238792-39238811 Msa0950620:intron 55.0%
GTCTACCTCCCACTTACCAG+GGG + chr6_3:39238793-39238812 Msa0950620:intron 55.0%
TAGGACCACCCCTGGTAAGT+GGG - chr6_3:39238804-39238823 None:intergenic 55.0%
TTAGGACCACCCCTGGTAAG+TGG - chr6_3:39238805-39238824 None:intergenic 55.0%
TGTTGCTCTCGGGGTTCCCT+CGG + chr6_3:39234256-39234275 Msa0950620:intron 60.0%
TACCTCCCACTTACCAGGGG+TGG + chr6_3:39238796-39238815 Msa0950620:intron 60.0%
! AAGCGAAGAAGGCGCGGACA+CGG + chr6_3:39238882-39238901 Msa0950620:CDS 60.0%
AAGGCGCGGACACGGTTATC+TGG + chr6_3:39238890-39238909 Msa0950620:CDS 60.0%
CGCGGACACGGTTATCTGGT+TGG + chr6_3:39238894-39238913 Msa0950620:CDS 60.0%
GGGAACCCCGAGAGCAACAC+AGG - chr6_3:39234255-39234274 None:intergenic 65.0%
CAGCCGAGGGTCTTGCACAG+CGG + chr6_3:39235920-39235939 Msa0950620:CDS 65.0%
!! CCAGGAGTGTCAGCCCAACC+TGG - chr6_3:39238466-39238485 None:intergenic 65.0%
! CCAGGTTGGGCTGACACTCC+TGG + chr6_3:39238463-39238482 Msa0950620:CDS 65.0%
GACCACCCCTGGTAAGTGGG+AGG - chr6_3:39238801-39238820 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 39233285 39239372 39233285 ID=Msa0950620;Name=Msa0950620
chr6_3 mRNA 39233285 39239372 39233285 ID=Msa0950620-mRNA-1;Parent=Msa0950620;Name=Msa0950620-mRNA-1;_AED=0.31;_eAED=0.31;_QI=41|0.16|0.71|1|0.33|0.71|7|301|237
chr6_3 exon 39233285 39233409 39233285 ID=Msa0950620-mRNA-1:exon:9503;Parent=Msa0950620-mRNA-1
chr6_3 exon 39235539 39235549 39235539 ID=Msa0950620-mRNA-1:exon:9504;Parent=Msa0950620-mRNA-1
chr6_3 exon 39235822 39235941 39235822 ID=Msa0950620-mRNA-1:exon:9505;Parent=Msa0950620-mRNA-1
chr6_3 exon 39236568 39236614 39236568 ID=Msa0950620-mRNA-1:exon:9506;Parent=Msa0950620-mRNA-1
chr6_3 exon 39237452 39237570 39237452 ID=Msa0950620-mRNA-1:exon:9507;Parent=Msa0950620-mRNA-1
chr6_3 exon 39238397 39238518 39238397 ID=Msa0950620-mRNA-1:exon:9508;Parent=Msa0950620-mRNA-1
chr6_3 exon 39238861 39239372 39238861 ID=Msa0950620-mRNA-1:exon:9509;Parent=Msa0950620-mRNA-1
chr6_3 five_prime_UTR 39233285 39233325 39233285 ID=Msa0950620-mRNA-1:five_prime_utr;Parent=Msa0950620-mRNA-1
chr6_3 CDS 39233326 39233409 39233326 ID=Msa0950620-mRNA-1:cds;Parent=Msa0950620-mRNA-1
chr6_3 CDS 39235539 39235549 39235539 ID=Msa0950620-mRNA-1:cds;Parent=Msa0950620-mRNA-1
chr6_3 CDS 39235822 39235941 39235822 ID=Msa0950620-mRNA-1:cds;Parent=Msa0950620-mRNA-1
chr6_3 CDS 39236568 39236614 39236568 ID=Msa0950620-mRNA-1:cds;Parent=Msa0950620-mRNA-1
chr6_3 CDS 39237452 39237570 39237452 ID=Msa0950620-mRNA-1:cds;Parent=Msa0950620-mRNA-1
chr6_3 CDS 39238397 39238518 39238397 ID=Msa0950620-mRNA-1:cds;Parent=Msa0950620-mRNA-1
chr6_3 CDS 39238861 39239071 39238861 ID=Msa0950620-mRNA-1:cds;Parent=Msa0950620-mRNA-1
chr6_3 three_prime_UTR 39239072 39239372 39239072 ID=Msa0950620-mRNA-1:three_prime_utr;Parent=Msa0950620-mRNA-1
Gene Sequence

>Msa0950620

ATGAAAAAAAGTGGAACATTGCAATTACAACTTCAGTTTCACTTCTCCTTTAACATTGTATCTCTCATTATGTTTCTTATCAAGAGTGAAAGCAACGAGCATTCTAAGAATTTCAAACCAGAGGAAACAGAAACACAAATACCAGGGAAGAATTGCATTGTAACAGGAGCAAACTCTGGAATTGGTTATGCGGCAGCCGAGGGTCTTGCACAGCGATTTGTGATCTGTCATCTGTCAAGGATATCAAGTCAATGGCTTCGAGGCACTTACGCCATGACTGAACTGATGGTACCATTACTGGAGAAAGCTTCCCCTGATGCACGTGTCATTACTGTTTCTTCTGGTGGAATGTATAGTACTCCCTTGACCAAAGATCTACAGGTTGCACTAACAGAAAATTGGGGTGAAACATACAAGAACAAAGGGATAGGATTTTACTCGATGCATCCAGGTTGGGCTGACACTCCTGGTGTTGCAAAAAGTTTGCCAGGCTTCTCAAAATCGCTTGCAGGGAAGCTTAGAACAAGCGAAGAAGGCGCGGACACGGTTATCTGGTTGGCACTACAACCAAAGGAGAAGTTGGTATCTGGTGCATTTTATTTTGATAGAGCTGAAGCTCCCAAACACCTTTCATTTAATGCTACAAGTGGTTCTCATACTGTGATCAACTCTGTCACTGATAGTCTTCGATCCTTGGCATCTCTTTCGGCTTAA

Protein sequence

>Msa0950620

MKKSGTLQLQLQFHFSFNIVSLIMFLIKSESNEHSKNFKPEETETQIPGKNCIVTGANSGIGYAAAEGLAQRFVICHLSRISSQWLRGTYAMTELMVPLLEKASPDARVITVSSGGMYSTPLTKDLQVALTENWGETYKNKGIGFYSMHPGWADTPGVAKSLPGFSKSLAGKLRTSEEGADTVIWLALQPKEKLVSGAFYFDRAEAPKHLSFNATSGSHTVINSVTDSLRSLASLSA*