AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1012660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012660 MtrunA17_Chr7g0224251 97.030 101 3 0 1 101 1 101 4.50e-70 205
Msa1012660 MtrunA17_Chr7g0224241 89.189 111 12 0 1 111 1 111 1.82e-69 211
Msa1012660 MtrunA17_Chr8g0386041 64.356 101 36 0 1 101 1 101 3.14e-49 152
Msa1012660 MtrunA17_Chr7g0218501 56.989 93 38 1 3 93 4 96 2.11e-34 115
Msa1012660 MtrunA17_Chr6g0454091 57.471 87 37 0 7 93 8 94 2.71e-33 112
Msa1012660 MtrunA17_Chr7g0268701 51.515 99 46 2 4 101 5 102 7.64e-33 111
Msa1012660 MtrunA17_Chr8g0386071 48.485 66 34 0 48 113 20 85 1.95e-15 66.2
Msa1012660 MtrunA17_Chr8g0386061 53.488 43 20 0 1 43 1 43 1.48e-12 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012660 AT3G26980.1 74.257 101 26 0 1 101 1 101 5.64e-54 165
Msa1012660 AT4G24990.2 62.376 101 38 0 1 101 1 101 5.27e-48 149
Msa1012660 AT4G24990.1 62.376 101 38 0 1 101 1 101 5.27e-48 149
Msa1012660 AT1G22050.1 53.125 96 44 1 3 97 4 99 1.66e-34 115
Msa1012660 AT1G77870.1 54.369 103 45 1 1 101 1 103 1.93e-34 115
Msa1012660 AT5G15460.2 54.651 86 39 0 7 92 8 93 1.59e-31 108
Msa1012660 AT5G15460.1 54.651 86 39 0 7 92 8 93 1.59e-31 108
Msa1012660 AT5G15460.4 54.651 86 39 0 7 92 8 93 1.59e-31 108
Msa1012660 AT3G01050.2 50.000 86 43 0 7 92 8 93 3.26e-27 97.1
Msa1012660 AT3G01050.3 50.000 86 43 0 7 92 8 93 3.26e-27 97.1
Msa1012660 AT3G01050.1 50.000 86 43 0 7 92 8 93 3.26e-27 97.1
Msa1012660 AT3G01050.4 50.000 86 43 0 7 92 8 93 3.26e-27 97.1
Msa1012660 AT3G01050.5 50.000 86 43 0 7 92 8 93 3.26e-27 97.1
Msa1012660 AT5G15460.3 54.902 51 23 0 42 92 17 67 8.25e-14 62.4

Find 27 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAAATGCTGGCAAAATTT+TGG 0.148008 7_1:+17989690 Msa1012660:CDS
TGTTGTCGTTCAGCCATCTT+TGG 0.348360 7_1:+17989783 Msa1012660:CDS
TATCTGATCCATCGTATATA+CGG 0.369078 7_1:-17986676 None:intergenic
ATATACGATGGATCAGATAT+TGG 0.380125 7_1:+17986680 Msa1012660:CDS
GGCCAATGTAGAGTACCTTT+TGG 0.427256 7_1:+17989730 Msa1012660:CDS
TGAAGTTGGTGAATAAGAAA+AGG 0.430837 7_1:-17986705 None:intergenic
AGCTCCACCAATTCATCATC+AGG 0.438663 7_1:-17986647 None:intergenic
CGAGATGCCTGATGATGAAT+TGG 0.447255 7_1:+17986640 Msa1012660:exon
TTAATATCACTTGCTGCCCT+TGG 0.457315 7_1:-17989664 None:intergenic
TCTTTGGCAAAAGCGAAAAC+AGG 0.475441 7_1:+17989799 Msa1012660:CDS
GATATTAAACTCATAAATGC+TGG 0.505519 7_1:+17989679 Msa1012660:CDS
GAAGTTGGTGAATAAGAAAA+GGG 0.509171 7_1:-17986704 None:intergenic
TTCAACTGTTTCCATGCTCA+AGG 0.518291 7_1:+17986724 Msa1012660:CDS
CCAGAAGGAAGCTCACCAAA+AGG 0.552790 7_1:-17989745 None:intergenic
CTGTTTCCATGCTCAAGGAA+AGG 0.562351 7_1:+17986729 Msa1012660:CDS
AGCATGGAAACAGTTGAAGT+TGG 0.586596 7_1:-17986719 None:intergenic
TGCATGGTGATGACCCCAGA+AGG 0.596413 7_1:-17989760 None:intergenic
CACCAAAAGGTACTCTACAT+TGG 0.603291 7_1:-17989732 None:intergenic
TTGGAGAACAACAAGACGGT+GGG 0.608984 7_1:+17989709 Msa1012660:CDS
GATGCCTGATGATGAATTGG+TGG 0.609921 7_1:+17986643 Msa1012660:exon
AGACAAGAAAATTATACCAA+GGG 0.613126 7_1:+17989648 Msa1012660:intron
CTGAAGTTCCGTATATACGA+TGG 0.627299 7_1:+17986668 Msa1012660:CDS
TTGTTTGTAATAAGCAAACA+TGG 0.646664 7_1:-17986488 None:intergenic
CAGACAAGAAAATTATACCA+AGG 0.653948 7_1:+17989647 Msa1012660:intron
TTTGGAGAACAACAAGACGG+TGG 0.663548 7_1:+17989708 Msa1012660:CDS
TGGCTGAACGACAACATGCA+TGG 0.679504 7_1:-17989776 None:intergenic
TTTGTAATAAGCAAACATGG+TGG 0.688014 7_1:-17986485 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTGAATTATTTAAAAT+AGG + chr7_1:17989323-17989342 Msa1012660:intron 10.0%
!! TATGTAATTAATTAACCTTT+GGG - chr7_1:17986770-17986789 None:intergenic 15.0%
!! TTATGTAATTAATTAACCTT+TGG - chr7_1:17986771-17986790 None:intergenic 15.0%
!! TTAATATGTTTATTCTCAAA+TGG + chr7_1:17987745-17987764 Msa1012660:intron 15.0%
!! TAATATGTTTATTCTCAAAT+GGG + chr7_1:17987746-17987765 Msa1012660:intron 15.0%
!! CAACAAATATTAATGTTTAT+CGG - chr7_1:17988047-17988066 None:intergenic 15.0%
!!! TATTTTGTACTTTTTTACTA+TGG + chr7_1:17989210-17989229 Msa1012660:intron 15.0%
!!! TTATTTAAAATAGGATAAGA+TGG + chr7_1:17989332-17989351 Msa1012660:intron 15.0%
!!! AAAAGACACATTTTTATAAA+TGG - chr7_1:17989622-17989641 None:intergenic 15.0%
!! AAATAATAGGGATTTAAATA+AGG + chr7_1:17989925-17989944 Msa1012660:intron 15.0%
!! TCAAAATAATCCAATTATAT+TGG + chr7_1:17989970-17989989 Msa1012660:intron 15.0%
!! AATATGTTTATTCTCAAATG+GGG + chr7_1:17987747-17987766 Msa1012660:intron 20.0%
!!! AAAATGCTTTTGTATTCAAT+TGG + chr7_1:17987850-17987869 Msa1012660:intron 20.0%
!!! AAATGCTTTTGTATTCAATT+GGG + chr7_1:17987851-17987870 Msa1012660:intron 20.0%
!!! ATGTCATAAGATTAGTTTTT+CGG + chr7_1:17987938-17987957 Msa1012660:intron 20.0%
!!! AAAGAAAACTTTACTGTTTT+TGG + chr7_1:17987998-17988017 Msa1012660:intron 20.0%
!! CGATAAACATTAATATTTGT+TGG + chr7_1:17988045-17988064 Msa1012660:intron 20.0%
!!! AATATTTGTTGGATTAGTAA+TGG + chr7_1:17988056-17988075 Msa1012660:intron 20.0%
!! ACGTATACTTATTAATTGTT+TGG + chr7_1:17988197-17988216 Msa1012660:intron 20.0%
!!! CTTGATTTTGTAAATTCATT+CGG + chr7_1:17988251-17988270 Msa1012660:intron 20.0%
!! TATAAATAAGTGGTTAGATT+TGG + chr7_1:17988364-17988383 Msa1012660:intron 20.0%
!! AAAAATATTCCTGTTTAACT+CGG - chr7_1:17988938-17988957 None:intergenic 20.0%
!!! AATATTTTTTTCCAACTGAT+TGG + chr7_1:17988949-17988968 Msa1012660:intron 20.0%
!!! TACTATTTCTTCTTCAATTT+GGG + chr7_1:17989384-17989403 Msa1012660:intron 20.0%
!! AATGGAATAATGAAATAGAA+TGG - chr7_1:17989501-17989520 None:intergenic 20.0%
!! AGTATAAATACATTAACATC+TGG - chr7_1:17989890-17989909 None:intergenic 20.0%
!! TTAAATCCCTATTATTTCAA+TGG - chr7_1:17989922-17989941 None:intergenic 20.0%
!! CACAATAATACCAATATAAT+TGG - chr7_1:17989983-17990002 None:intergenic 20.0%
!! AATAGACCTATCTTATAATA+TGG + chr7_1:17990069-17990088 Msa1012660:intron 20.0%
!! TTGTTTCCATATTATAAGAT+AGG - chr7_1:17990078-17990097 None:intergenic 20.0%
!! ACAACCAAAATTAATTAACT+AGG - chr7_1:17990250-17990269 None:intergenic 20.0%
!! TTCCCCTAAAATAAATAATA+TGG - chr7_1:17990323-17990342 None:intergenic 20.0%
! TTGTTTGTAATAAGCAAACA+TGG - chr7_1:17986491-17986510 None:intergenic 25.0%
!!! GTTTTGTTTTAGTTTTTGTG+TGG + chr7_1:17986868-17986887 Msa1012660:intron 25.0%
!!! ATTGAATTTTTAGCCGTTTT+TGG + chr7_1:17987147-17987166 Msa1012660:intron 25.0%
!!! TGTTAATGGATTCTGTTTTT+AGG + chr7_1:17987706-17987725 Msa1012660:intron 25.0%
! ATAAGATTCTTTGCTTTATC+TGG + chr7_1:17987894-17987913 Msa1012660:intron 25.0%
!!! TGTCATAAGATTAGTTTTTC+GGG + chr7_1:17987939-17987958 Msa1012660:intron 25.0%
!! GATTAGTAATGGAAACTATT+TGG + chr7_1:17988067-17988086 Msa1012660:intron 25.0%
! TAAGCATTTGAATATGAGTA+TGG + chr7_1:17988125-17988144 Msa1012660:intron 25.0%
! TTGAATATGAGTATGGAAAT+TGG + chr7_1:17988132-17988151 Msa1012660:intron 25.0%
! TACATTACCTAGATTTCTAT+TGG + chr7_1:17988305-17988324 Msa1012660:intron 25.0%
! TTATCAACCAATAGAAATCT+AGG - chr7_1:17988315-17988334 None:intergenic 25.0%
!!! AGATTTCTATTGGTTGATAA+AGG + chr7_1:17988315-17988334 Msa1012660:intron 25.0%
! TACATTTCGCTATAAATAAG+TGG + chr7_1:17988354-17988373 Msa1012660:intron 25.0%
! TAGTTTCATTATCAAAATGC+TGG + chr7_1:17988772-17988791 Msa1012660:intron 25.0%
!!! TCATCTTTTTGACTTTTTGT+TGG + chr7_1:17988870-17988889 Msa1012660:intron 25.0%
!!! TTTTGACTTTTTGTTGGAAA+AGG + chr7_1:17988876-17988895 Msa1012660:intron 25.0%
! ATATCTGTATCATGATATTC+TGG + chr7_1:17988994-17989013 Msa1012660:intron 25.0%
!!! GTTTTGTTAGTAACATTAAC+TGG + chr7_1:17989016-17989035 Msa1012660:intron 25.0%
! AGAGTTATTACATCATATGT+AGG - chr7_1:17989083-17989102 None:intergenic 25.0%
! AAAGGTAATACATTTAGAAG+AGG - chr7_1:17989112-17989131 None:intergenic 25.0%
! TATCAAATATAGGTCACTAA+AGG - chr7_1:17989130-17989149 None:intergenic 25.0%
!!! TTGTCTGGTTCTTTATATTA+TGG + chr7_1:17989182-17989201 Msa1012660:intron 25.0%
! ATAATCCAAACATATGCTAA+GGG - chr7_1:17989265-17989284 None:intergenic 25.0%
! AATAATCCAAACATATGCTA+AGG - chr7_1:17989266-17989285 None:intergenic 25.0%
! TTAGCATATGTTTGGATTAT+TGG + chr7_1:17989265-17989284 Msa1012660:intron 25.0%
! ATATGTTTGGATTATTGGAA+AGG + chr7_1:17989270-17989289 Msa1012660:intron 25.0%
!! CTACTATTTCTTCTTCAATT+TGG + chr7_1:17989383-17989402 Msa1012660:intron 25.0%
! AGACAAGAAAATTATACCAA+GGG + chr7_1:17989648-17989667 Msa1012660:intron 25.0%
! GATATTAAACTCATAAATGC+TGG + chr7_1:17989679-17989698 Msa1012660:CDS 25.0%
! AATAGGGATTTAAATAAGGA+AGG + chr7_1:17989929-17989948 Msa1012660:intron 25.0%
!! TTGGTATTATTGTGATTTTG+AGG + chr7_1:17989989-17990008 Msa1012660:intron 25.0%
!! TGGTATTATTGTGATTTTGA+GGG + chr7_1:17989990-17990009 Msa1012660:intron 25.0%
! TATAATATGGAAACAACTGT+TGG + chr7_1:17990082-17990101 Msa1012660:intron 25.0%
! CTCATTTATAAGCTGTTATT+TGG - chr7_1:17990226-17990245 None:intergenic 25.0%
! CAAATAACAGCTTATAAATG+AGG + chr7_1:17990224-17990243 Msa1012660:intron 25.0%
!! TAGTTACTCCTTTTAATCTT+AGG + chr7_1:17990296-17990315 Msa1012660:intron 25.0%
!! AGTTACTCCTTTTAATCTTA+GGG + chr7_1:17990297-17990316 Msa1012660:intron 25.0%
!!! AGGGCCATATTATTTATTTT+AGG + chr7_1:17990316-17990335 Msa1012660:intron 25.0%
!!! GGGCCATATTATTTATTTTA+GGG + chr7_1:17990317-17990336 Msa1012660:intron 25.0%
!!! GGCCATATTATTTATTTTAG+GGG + chr7_1:17990318-17990337 Msa1012660:intron 25.0%
TTTGTAATAAGCAAACATGG+TGG - chr7_1:17986488-17986507 None:intergenic 30.0%
TATCTGATCCATCGTATATA+CGG - chr7_1:17986679-17986698 None:intergenic 30.0%
ATATACGATGGATCAGATAT+TGG + chr7_1:17986680-17986699 Msa1012660:CDS 30.0%
!! GAAGTTGGTGAATAAGAAAA+GGG - chr7_1:17986707-17986726 None:intergenic 30.0%
!! TGAAGTTGGTGAATAAGAAA+AGG - chr7_1:17986708-17986727 None:intergenic 30.0%
!!! TTGTTTTAGTTTTTGTGTGG+TGG + chr7_1:17986871-17986890 Msa1012660:intron 30.0%
!!! TGTTTTAGTTTTTGTGTGGT+GGG + chr7_1:17986872-17986891 Msa1012660:intron 30.0%
CCACTTTCTCAAATTACTAT+TGG - chr7_1:17987264-17987283 None:intergenic 30.0%
CCAATAGTAATTTGAGAAAG+TGG + chr7_1:17987261-17987280 Msa1012660:intron 30.0%
ACTGTTTGCATAAACTATCT+TGG + chr7_1:17987498-17987517 Msa1012660:intron 30.0%
!!! TGGATTCTGTTTTTAGGAAA+AGG + chr7_1:17987712-17987731 Msa1012660:intron 30.0%
TTCAATTGGGTAGTTGAATT+AGG + chr7_1:17987864-17987883 Msa1012660:intron 30.0%
!!! ATAAGATTAGTTTTTCGGGT+TGG + chr7_1:17987943-17987962 Msa1012660:intron 30.0%
! TTTCTTGTCTTGTGTCATTA+AGG + chr7_1:17987973-17987992 Msa1012660:intron 30.0%
TTTATCGGTATTTCCTGAAA+CGG - chr7_1:17988032-17988051 None:intergenic 30.0%
! AGTAATGGAAACTATTTGGT+AGG + chr7_1:17988071-17988090 Msa1012660:intron 30.0%
! AATAAGTGGTTAGATTTGGT+TGG + chr7_1:17988368-17988387 Msa1012660:intron 30.0%
AAAAATCCGCTACATAAACA+TGG - chr7_1:17988666-17988685 None:intergenic 30.0%
AGTCAAAAAGATGAGATTTC+TGG - chr7_1:17988864-17988883 None:intergenic 30.0%
TCTGAAAGAGAGTTTAGTAA+CGG - chr7_1:17989049-17989068 None:intergenic 30.0%
!! GGGAGTATTCTATCAAATAT+AGG - chr7_1:17989140-17989159 None:intergenic 30.0%
! TTTTTCCCTTAGCATATGTT+TGG + chr7_1:17989257-17989276 Msa1012660:intron 30.0%
AAGAAATAGTAGAAAGTGAG+TGG - chr7_1:17989375-17989394 None:intergenic 30.0%
TATTTCTTCTTCAATTTGGG+TGG + chr7_1:17989387-17989406 Msa1012660:intron 30.0%
ATGAGTGGAGCATAATATAA+TGG - chr7_1:17989519-17989538 None:intergenic 30.0%
AGAATATAGCACTAAAGCAA+CGG - chr7_1:17989565-17989584 None:intergenic 30.0%
AGAAAACCGCTAAGAAATAA+GGG - chr7_1:17989591-17989610 None:intergenic 30.0%
AAGAAAACCGCTAAGAAATA+AGG - chr7_1:17989592-17989611 None:intergenic 30.0%
CAGACAAGAAAATTATACCA+AGG + chr7_1:17989647-17989666 Msa1012660:intron 30.0%
! CATAAATGCTGGCAAAATTT+TGG + chr7_1:17989690-17989709 Msa1012660:CDS 30.0%
!! AATTTTGGAGAACAACAAGA+CGG + chr7_1:17989705-17989724 Msa1012660:CDS 30.0%
TATGCCACCATTGAAATAAT+AGG + chr7_1:17989912-17989931 Msa1012660:intron 30.0%
ATGCCACCATTGAAATAATA+GGG + chr7_1:17989913-17989932 Msa1012660:intron 30.0%
AATCCCTATTATTTCAATGG+TGG - chr7_1:17989919-17989938 None:intergenic 30.0%
CATGATAATTGACACAATCA+TGG - chr7_1:17990043-17990062 None:intergenic 30.0%
! GAGGCCTAGTTAATTAATTT+TGG + chr7_1:17990243-17990262 Msa1012660:intron 30.0%
AATATGGCCCTAAGATTAAA+AGG - chr7_1:17990307-17990326 None:intergenic 30.0%
AAGTTTGAACAGTTTCCAAA+CGG - chr7_1:17990431-17990450 None:intergenic 30.0%
AAAAATCCTTTCCTTGAGCA+TGG - chr7_1:17986738-17986757 None:intergenic 35.0%
! AGGAAAGGATTTTTGCTGAA+TGG + chr7_1:17986744-17986763 Msa1012660:CDS 35.0%
GCACATAAACTTCTGATTGA+AGG + chr7_1:17986981-17987000 Msa1012660:intron 35.0%
!!! TTTTAGCCGTTTTTGGTTGT+TGG + chr7_1:17987154-17987173 Msa1012660:intron 35.0%
!!! TTTAGCCGTTTTTGGTTGTT+GGG + chr7_1:17987155-17987174 Msa1012660:intron 35.0%
ATTTGCCCAACAACCAAAAA+CGG - chr7_1:17987163-17987182 None:intergenic 35.0%
AAATAAGCTGAACACGTCTT+AGG + chr7_1:17987532-17987551 Msa1012660:intron 35.0%
GCTTATTTGAACCTATCTAC+CGG - chr7_1:17987614-17987633 None:intergenic 35.0%
TTATGTTTGATGCTCTTTCG+TGG + chr7_1:17987680-17987699 Msa1012660:intron 35.0%
!!! TTTGGTTTTTGAACCGTTTC+AGG + chr7_1:17988016-17988035 Msa1012660:intron 35.0%
TTTATCCAGAAAAGGTTCAG+TGG + chr7_1:17988095-17988114 Msa1012660:intron 35.0%
TCACTTTCTTGTGGTTGTTA+TGG + chr7_1:17988453-17988472 Msa1012660:intron 35.0%
! GGTGATGCAATTGACTATTT+TGG + chr7_1:17988474-17988493 Msa1012660:intron 35.0%
AAATTGCCTCCATAGCATTA+TGG + chr7_1:17988572-17988591 Msa1012660:intron 35.0%
GCGGATAAAATAGTTGTTGT+TGG - chr7_1:17988618-17988637 None:intergenic 35.0%
GCAATACCATGTTTATGTAG+CGG + chr7_1:17988657-17988676 Msa1012660:intron 35.0%
CTATCGAAATCTTCTCTCTA+AGG - chr7_1:17988755-17988774 None:intergenic 35.0%
GCTACTTGCAATTATGTTTC+AGG + chr7_1:17988971-17988990 Msa1012660:intron 35.0%
!!! TTTTTTACTATGGACGCATG+TGG + chr7_1:17989220-17989239 Msa1012660:intron 35.0%
TATGCTAAGGGAAAAATCAC+AGG - chr7_1:17989253-17989272 None:intergenic 35.0%
TAGTAGAAAGTGAGTGGAAT+AGG - chr7_1:17989369-17989388 None:intergenic 35.0%
! CGAGTCTTTTTCTCAAACAA+TGG + chr7_1:17989421-17989440 Msa1012660:intron 35.0%
TCGAACGAAATGAAATGAGA+GGG - chr7_1:17989462-17989481 None:intergenic 35.0%
ATCGAACGAAATGAAATGAG+AGG - chr7_1:17989463-17989482 None:intergenic 35.0%
! TCTTGTCCCTTATTTCTTAG+CGG + chr7_1:17989582-17989601 Msa1012660:intron 35.0%
AGGGATTTAAATAAGGAAGG+AGG + chr7_1:17989932-17989951 Msa1012660:intron 35.0%
TGACATTTGTGTAAACCACA+GGG - chr7_1:17990360-17990379 None:intergenic 35.0%
CTAACATCTACAAAACCTTG+TGG + chr7_1:17990466-17990485 Msa1012660:intron 35.0%
CTGAAGTTCCGTATATACGA+TGG + chr7_1:17986668-17986687 Msa1012660:CDS 40.0%
AGCATGGAAACAGTTGAAGT+TGG - chr7_1:17986722-17986741 None:intergenic 40.0%
TTCAACTGTTTCCATGCTCA+AGG + chr7_1:17986724-17986743 Msa1012660:CDS 40.0%
! ATTTTTGCTGAATGGCCCAA+AGG + chr7_1:17986752-17986771 Msa1012660:CDS 40.0%
AACTCAAACCCTATGAAGCA+AGG - chr7_1:17987118-17987137 None:intergenic 40.0%
! TATTGGTGTCTGACACATGT+CGG - chr7_1:17987247-17987266 None:intergenic 40.0%
! AAGTGTCAGTGCTATTGACA+TGG + chr7_1:17987370-17987389 Msa1012660:intron 40.0%
!! GCTATTGACATGGCTTTGTT+TGG + chr7_1:17987380-17987399 Msa1012660:intron 40.0%
! TGGTAGGCTTTATCCAGAAA+AGG + chr7_1:17988087-17988106 Msa1012660:intron 40.0%
! GGTTAGATTTGGTTGGCAAA+TGG + chr7_1:17988375-17988394 Msa1012660:intron 40.0%
TGGTTGGCAAATGGTTGTAA+AGG + chr7_1:17988384-17988403 Msa1012660:intron 40.0%
GCTATGTCATCACTTTCTTG+TGG + chr7_1:17988444-17988463 Msa1012660:intron 40.0%
TTCACCATGCCATAATGCTA+TGG - chr7_1:17988584-17988603 None:intergenic 40.0%
AAACATGGTATTGCAGCCTA+TGG - chr7_1:17988651-17988670 None:intergenic 40.0%
TAGGCATTTAGAAGACCTGT+AGG + chr7_1:17988817-17988836 Msa1012660:intron 40.0%
AGGCATTTAGAAGACCTGTA+GGG + chr7_1:17988818-17988837 Msa1012660:intron 40.0%
ATTGCAAGTAGCCAATCAGT+TGG - chr7_1:17988963-17988982 None:intergenic 40.0%
TTGTAGACGGCAACATCAAA+GGG - chr7_1:17989160-17989179 None:intergenic 40.0%
TCTTCTTCAATTTGGGTGGA+TGG + chr7_1:17989391-17989410 Msa1012660:intron 40.0%
TTCAATTTGGGTGGATGGTA+TGG + chr7_1:17989396-17989415 Msa1012660:intron 40.0%
GATGGATATTAAGCGATGAG+TGG - chr7_1:17989534-17989553 None:intergenic 40.0%
AAAGCAACGGTAGTTAAGGA+TGG - chr7_1:17989552-17989571 None:intergenic 40.0%
CACTAAAGCAACGGTAGTTA+AGG - chr7_1:17989556-17989575 None:intergenic 40.0%
! TTAATATCACTTGCTGCCCT+TGG - chr7_1:17989667-17989686 None:intergenic 40.0%
!! CACCAAAAGGTACTCTACAT+TGG - chr7_1:17989735-17989754 None:intergenic 40.0%
!! GTTTTCGCTTTTGCCAAAGA+TGG - chr7_1:17989799-17989818 None:intergenic 40.0%
TCTTTGGCAAAAGCGAAAAC+AGG + chr7_1:17989799-17989818 Msa1012660:CDS 40.0%
GACATTTGTGTAAACCACAG+GGG - chr7_1:17990359-17990378 None:intergenic 40.0%
GTGACATTTGTGTAAACCAC+AGG - chr7_1:17990361-17990380 None:intergenic 40.0%
ATATGTGCTTGGGAATAGAG+GGG - chr7_1:17990390-17990409 None:intergenic 40.0%
GATATGTGCTTGGGAATAGA+GGG - chr7_1:17990391-17990410 None:intergenic 40.0%
AGATATGTGCTTGGGAATAG+AGG - chr7_1:17990392-17990411 None:intergenic 40.0%
TACAAAACGTTCAAGCCACA+AGG - chr7_1:17990484-17990503 None:intergenic 40.0%
! TTGTGGCTTGAACGTTTTGT+AGG + chr7_1:17990483-17990502 Msa1012660:intron 40.0%
! CGAGATGCCTGATGATGAAT+TGG + chr7_1:17986640-17986659 Msa1012660:exon 45.0%
! GATGCCTGATGATGAATTGG+TGG + chr7_1:17986643-17986662 Msa1012660:exon 45.0%
AGCTCCACCAATTCATCATC+AGG - chr7_1:17986650-17986669 None:intergenic 45.0%
CTGTTTCCATGCTCAAGGAA+AGG + chr7_1:17986729-17986748 Msa1012660:CDS 45.0%
TACATGTGTCTGTGTCGTGA+TGG - chr7_1:17987023-17987042 None:intergenic 45.0%
ATGAAGCAAGGACACAGACA+CGG - chr7_1:17987106-17987125 None:intergenic 45.0%
TGTCTGTGTCCTTGCTTCAT+AGG + chr7_1:17987106-17987125 Msa1012660:intron 45.0%
GTCTGTGTCCTTGCTTCATA+GGG + chr7_1:17987107-17987126 Msa1012660:intron 45.0%
GCTATGTAGCACTAACATGC+AGG + chr7_1:17987184-17987203 Msa1012660:intron 45.0%
AGTTTCCCAAGTGCTTATGC+CGG + chr7_1:17987592-17987611 Msa1012660:intron 45.0%
ATCTACCGGCATAAGCACTT+GGG - chr7_1:17987600-17987619 None:intergenic 45.0%
TATCTACCGGCATAAGCACT+TGG - chr7_1:17987601-17987620 None:intergenic 45.0%
AAGTGCTTATGCCGGTAGAT+AGG + chr7_1:17987600-17987619 Msa1012660:intron 45.0%
! TCTATGCCTAAGGGCTTGTT+TGG - chr7_1:17987641-17987660 None:intergenic 45.0%
AACAAGCCCTTAGGCATAGA+AGG + chr7_1:17987641-17987660 Msa1012660:intron 45.0%
ACAAGCCCTTAGGCATAGAA+GGG + chr7_1:17987642-17987661 Msa1012660:intron 45.0%
GAAACCCCTTCTATGCCTAA+GGG - chr7_1:17987650-17987669 None:intergenic 45.0%
AGAAACCCCTTCTATGCCTA+AGG - chr7_1:17987651-17987670 None:intergenic 45.0%
TGTTTGATGCTCTTTCGTGG+AGG + chr7_1:17987683-17987702 Msa1012660:intron 45.0%
!! CTCTTTCGTGGAGGTGTTAA+TGG + chr7_1:17987692-17987711 Msa1012660:intron 45.0%
! GATCACCACTGAACCTTTTC+TGG - chr7_1:17988103-17988122 None:intergenic 45.0%
TGGTTGTAAAGGTCACTGAG+AGG + chr7_1:17988395-17988414 Msa1012660:intron 45.0%
ACCATGCCATAATGCTATGG+AGG - chr7_1:17988581-17988600 None:intergenic 45.0%
ATCTTGTCTAACGTGACCAG+TGG - chr7_1:17988708-17988727 None:intergenic 45.0%
GGCATTTAGAAGACCTGTAG+GGG + chr7_1:17988819-17988838 Msa1012660:intron 45.0%
ACACTGCATCCGAGTTAAAC+AGG + chr7_1:17988926-17988945 Msa1012660:intron 45.0%
CTTGTAGACGGCAACATCAA+AGG - chr7_1:17989161-17989180 None:intergenic 45.0%
CTTTGATGTTGCCGTCTACA+AGG + chr7_1:17989159-17989178 Msa1012660:intron 45.0%
GAACCAGACAACCTTGTAGA+CGG - chr7_1:17989173-17989192 None:intergenic 45.0%
TTTGGAGAACAACAAGACGG+TGG + chr7_1:17989708-17989727 Msa1012660:CDS 45.0%
TTGGAGAACAACAAGACGGT+GGG + chr7_1:17989709-17989728 Msa1012660:CDS 45.0%
!! GGCCAATGTAGAGTACCTTT+TGG + chr7_1:17989730-17989749 Msa1012660:CDS 45.0%
! CTTTTGGTGAGCTTCCTTCT+GGG + chr7_1:17989746-17989765 Msa1012660:CDS 45.0%
! TTTTGGTGAGCTTCCTTCTG+GGG + chr7_1:17989747-17989766 Msa1012660:CDS 45.0%
TGTTGTCGTTCAGCCATCTT+TGG + chr7_1:17989783-17989802 Msa1012660:CDS 45.0%
ATTTGTGTAAACCACAGGGG+AGG - chr7_1:17990356-17990375 None:intergenic 45.0%
TATGTGCTTGGGAATAGAGG+GGG - chr7_1:17990389-17990408 None:intergenic 45.0%
TGTAGGGGAGATATGTGCTT+GGG - chr7_1:17990400-17990419 None:intergenic 45.0%
AACATGCAGGTGCAAACACC+TGG + chr7_1:17987197-17987216 Msa1012660:intron 50.0%
AGGTGCAAACACCTGGACAT+TGG + chr7_1:17987204-17987223 Msa1012660:intron 50.0%
ACACATCGTGTCCAATGTCC+AGG - chr7_1:17987218-17987237 None:intergenic 50.0%
GCCAATCCAAACAAGCCCTT+AGG + chr7_1:17987632-17987651 Msa1012660:intron 50.0%
! GCCTAAGGGCTTGTTTGGAT+TGG - chr7_1:17987636-17987655 None:intergenic 50.0%
CAAGCCCTTAGGCATAGAAG+GGG + chr7_1:17987643-17987662 Msa1012660:intron 50.0%
GCCTCCATAGCATTATGGCA+TGG + chr7_1:17988577-17988596 Msa1012660:intron 50.0%
ATCCGCCATGTTTCCACCAT+AGG + chr7_1:17988632-17988651 Msa1012660:intron 50.0%
! AGCCTATGGTGGAAACATGG+CGG - chr7_1:17988637-17988656 None:intergenic 50.0%
! TGCAGCCTATGGTGGAAACA+TGG - chr7_1:17988640-17988659 None:intergenic 50.0%
CATGGTATTGCAGCCTATGG+TGG - chr7_1:17988648-17988667 None:intergenic 50.0%
TTGTCTAACGTGACCAGTGG+CGG - chr7_1:17988705-17988724 None:intergenic 50.0%
! AGTCTCGTCTAAGGTGGTCT+AGG + chr7_1:17988798-17988817 Msa1012660:intron 50.0%
GTACTAACTAGTGCCCCTAC+AGG - chr7_1:17988835-17988854 None:intergenic 50.0%
TTGCCGTCTACAAGGTTGTC+TGG + chr7_1:17989167-17989186 Msa1012660:intron 50.0%
CCAGAAGGAAGCTCACCAAA+AGG - chr7_1:17989748-17989767 None:intergenic 50.0%
! CCTTTTGGTGAGCTTCCTTC+TGG + chr7_1:17989745-17989764 Msa1012660:CDS 50.0%
TGGCTGAACGACAACATGCA+TGG - chr7_1:17989779-17989798 None:intergenic 50.0%
CTGTAGGGGAGATATGTGCT+TGG - chr7_1:17990401-17990420 None:intergenic 50.0%
CAAACGGTGCAAGACTGTAG+GGG - chr7_1:17990415-17990434 None:intergenic 50.0%
CCAAACGGTGCAAGACTGTA+GGG - chr7_1:17990416-17990435 None:intergenic 50.0%
TCCAAACGGTGCAAGACTGT+AGG - chr7_1:17990417-17990436 None:intergenic 50.0%
AAGGACACAGACACGGACAC+TGG - chr7_1:17987099-17987118 None:intergenic 55.0%
TTGCTGCCATAATCCGCCAC+TGG + chr7_1:17988689-17988708 Msa1012660:intron 55.0%
!! ACGTGACCAGTGGCGGATTA+TGG - chr7_1:17988698-17988717 None:intergenic 55.0%
! TGCTGGCTGAGTCTCGTCTA+AGG + chr7_1:17988789-17988808 Msa1012660:intron 55.0%
TGGCTGAGTCTCGTCTAAGG+TGG + chr7_1:17988792-17988811 Msa1012660:intron 55.0%
! TGCATGGTGATGACCCCAGA+AGG - chr7_1:17989763-17989782 None:intergenic 55.0%
AATTACACGCACCTCCCCTG+TGG + chr7_1:17990342-17990361 Msa1012660:intron 55.0%
CCCTACAGTCTTGCACCGTT+TGG + chr7_1:17990413-17990432 Msa1012660:intron 55.0%
CATCCCTGCAGCGATTGAGA+CGG + chr7_1:17990510-17990529 Msa1012660:intron 55.0%
TTGCCGTCTCAATCGCTGCA+GGG - chr7_1:17990516-17990535 None:intergenic 55.0%
TTTGCCGTCTCAATCGCTGC+AGG - chr7_1:17990517-17990536 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 17986337 17990607 17986337 ID=Msa1012660;Name=Msa1012660
chr7_1 mRNA 17986337 17990607 17986337 ID=Msa1012660-mRNA-1;Parent=Msa1012660;Name=Msa1012660-mRNA-1;_AED=0.24;_eAED=0.24;_QI=307|0.33|0.5|0.5|1|1|4|0|113
chr7_1 exon 17986337 17986773 17986337 ID=Msa1012660-mRNA-1:exon:4515;Parent=Msa1012660-mRNA-1
chr7_1 exon 17989650 17989820 17989650 ID=Msa1012660-mRNA-1:exon:4516;Parent=Msa1012660-mRNA-1
chr7_1 exon 17989891 17989898 17989891 ID=Msa1012660-mRNA-1:exon:4517;Parent=Msa1012660-mRNA-1
chr7_1 exon 17990575 17990607 17990575 ID=Msa1012660-mRNA-1:exon:4518;Parent=Msa1012660-mRNA-1
chr7_1 five_prime_UTR 17986337 17986643 17986337 ID=Msa1012660-mRNA-1:five_prime_utr;Parent=Msa1012660-mRNA-1
chr7_1 CDS 17986644 17986773 17986644 ID=Msa1012660-mRNA-1:cds;Parent=Msa1012660-mRNA-1
chr7_1 CDS 17989650 17989820 17989650 ID=Msa1012660-mRNA-1:cds;Parent=Msa1012660-mRNA-1
chr7_1 CDS 17989891 17989898 17989891 ID=Msa1012660-mRNA-1:cds;Parent=Msa1012660-mRNA-1
chr7_1 CDS 17990575 17990607 17990575 ID=Msa1012660-mRNA-1:cds;Parent=Msa1012660-mRNA-1
Gene Sequence

>Msa1012660

ATGCCTGATGATGAATTGGTGGAGCTGAAGTTCCGTATATACGATGGATCAGATATTGGACCCTTTTCTTATTCACCAACTTCAACTGTTTCCATGCTCAAGGAAAGGATTTTTGCTGAATGGCCCAAAGACAAGAAAATTATACCAAGGGCAGCAAGTGATATTAAACTCATAAATGCTGGCAAAATTTTGGAGAACAACAAGACGGTGGGCCAATGTAGAGTACCTTTTGGTGAGCTTCCTTCTGGGGTCATCACCATGCATGTTGTCGTTCAGCCATCTTTGGCAAAAGCGAAAACAGATGTTAATTTTTCACTCACTAAAGCAATTAAAGTTTCATGA

Protein sequence

>Msa1012660

MPDDELVELKFRIYDGSDIGPFSYSPTSTVSMLKERIFAEWPKDKKIIPRAASDIKLINAGKILENNKTVGQCRVPFGELPSGVITMHVVVQPSLAKAKTDVNFSLTKAIKVS*