Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1012660 | AFK35066.1 | 89.189 | 111 | 12 | 0 | 1 | 111 | 1 | 111 | 4.04e-66 | 208 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1012660 | sp|Q9LSD8|MUB4_ARATH | 74.257 | 101 | 26 | 0 | 1 | 101 | 1 | 101 | 5.55e-53 | 165 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1012660 | I3S474 | 89.189 | 111 | 12 | 0 | 1 | 111 | 1 | 111 | 1.93e-66 | 208 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0013050 | Msa1012660 | -0.802332 | 5.900366e-49 | -8.615850e-47 |
Msa0028660 | Msa1012660 | 0.834402 | 3.059506e-56 | -8.615850e-47 |
Msa0032610 | Msa1012660 | 0.812458 | 4.197126e-51 | -8.615850e-47 |
Msa0054750 | Msa1012660 | 0.809330 | 1.995436e-50 | -8.615850e-47 |
Msa0115270 | Msa1012660 | 0.853239 | 2.724903e-61 | -8.615850e-47 |
Msa0115390 | Msa1012660 | 0.823921 | 1.067299e-53 | -8.615850e-47 |
Msa0119850 | Msa1012660 | 0.802287 | 6.027956e-49 | -8.615850e-47 |
Msa0608160 | Msa1012660 | 0.823351 | 1.451816e-53 | -8.615850e-47 |
Msa0647450 | Msa1012660 | -0.805869 | 1.083606e-49 | -8.615850e-47 |
Msa0648080 | Msa1012660 | 0.820626 | 6.209049e-53 | -8.615850e-47 |
Msa0661190 | Msa1012660 | -0.800788 | 1.222657e-48 | -8.615850e-47 |
Msa0739680 | Msa1012660 | 0.808558 | 2.919590e-50 | -8.615850e-47 |
Msa0761800 | Msa1012660 | 0.800274 | 1.556715e-48 | -8.615850e-47 |
Msa0782490 | Msa1012660 | 0.813947 | 1.977157e-51 | -8.615850e-47 |
Msa0784860 | Msa1012660 | 0.813524 | 2.450754e-51 | -8.615850e-47 |
Msa0793380 | Msa1012660 | 0.819977 | 8.748847e-53 | -8.615850e-47 |
Msa0152170 | Msa1012660 | 0.803610 | 3.210474e-49 | -8.615850e-47 |
Msa0172780 | Msa1012660 | 0.822082 | 2.865167e-53 | -8.615850e-47 |
Msa0389810 | Msa1012660 | 0.809641 | 1.711641e-50 | -8.615850e-47 |
Msa0442200 | Msa1012660 | 0.836519 | 8.922304e-57 | -8.615850e-47 |
Msa0982270 | Msa1012660 | 0.810586 | 1.071048e-50 | -8.615850e-47 |
Msa0996170 | Msa1012660 | 0.809941 | 1.475176e-50 | -8.615850e-47 |
Msa1012660 | Msa1012830 | 0.853918 | 1.738488e-61 | -8.615850e-47 |
Msa1012660 | Msa1143930 | -0.815697 | 8.096014e-52 | -8.615850e-47 |
Msa1012660 | Msa1217430 | -0.836515 | 8.942097e-57 | -8.615850e-47 |
Msa1012660 | Msa1233500 | 0.818556 | 1.843526e-52 | -8.615850e-47 |
Msa1012660 | Msa1275360 | 0.826909 | 2.094425e-54 | -8.615850e-47 |
Msa1012660 | Msa1302100 | 0.802516 | 5.406247e-49 | -8.615850e-47 |
Msa1012660 | Msa1302190 | -0.813098 | 3.040333e-51 | -8.615850e-47 |
Msa1012660 | Msa1319800 | 0.801395 | 9.186517e-49 | -8.615850e-47 |
Msa1012660 | Msa1362880 | 0.829180 | 5.945083e-55 | -8.615850e-47 |
Msa1012660 | Msa1455490 | 0.800065 | 1.716239e-48 | -8.615850e-47 |
Msa1012660 | Msa1465960 | 0.829023 | 6.491828e-55 | -8.615850e-47 |
Msa0256330 | Msa1012660 | 0.826387 | 2.789350e-54 | -8.615850e-47 |
Msa0295330 | Msa1012660 | 0.824107 | 9.652600e-54 | -8.615850e-47 |
Msa0302580 | Msa1012660 | -0.811632 | 6.352327e-51 | -8.615850e-47 |
Msa0500720 | Msa1012660 | 0.812403 | 4.314047e-51 | -8.615850e-47 |
Msa0529040 | Msa1012660 | 0.804387 | 2.213543e-49 | -8.615850e-47 |
Msa0553220 | Msa1012660 | -0.822155 | 2.755520e-53 | -8.615850e-47 |
Msa0562440 | Msa1012660 | 0.825827 | 3.791440e-54 | -8.615850e-47 |
Msa0870150 | Msa1012660 | 0.827642 | 1.397702e-54 | -8.615850e-47 |
Msa0935850 | Msa1012660 | 0.805652 | 1.204075e-49 | -8.615850e-47 |
Msa0971020 | Msa1012660 | 0.806865 | 6.685268e-50 | -8.615850e-47 |
Msa0976670 | Msa1012660 | 0.800442 | 1.438785e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1012660 | MtrunA17_Chr7g0224251 | 97.030 | 101 | 3 | 0 | 1 | 101 | 1 | 101 | 4.50e-70 | 205 |
Msa1012660 | MtrunA17_Chr7g0224241 | 89.189 | 111 | 12 | 0 | 1 | 111 | 1 | 111 | 1.82e-69 | 211 |
Msa1012660 | MtrunA17_Chr8g0386041 | 64.356 | 101 | 36 | 0 | 1 | 101 | 1 | 101 | 3.14e-49 | 152 |
Msa1012660 | MtrunA17_Chr7g0218501 | 56.989 | 93 | 38 | 1 | 3 | 93 | 4 | 96 | 2.11e-34 | 115 |
Msa1012660 | MtrunA17_Chr6g0454091 | 57.471 | 87 | 37 | 0 | 7 | 93 | 8 | 94 | 2.71e-33 | 112 |
Msa1012660 | MtrunA17_Chr7g0268701 | 51.515 | 99 | 46 | 2 | 4 | 101 | 5 | 102 | 7.64e-33 | 111 |
Msa1012660 | MtrunA17_Chr8g0386071 | 48.485 | 66 | 34 | 0 | 48 | 113 | 20 | 85 | 1.95e-15 | 66.2 |
Msa1012660 | MtrunA17_Chr8g0386061 | 53.488 | 43 | 20 | 0 | 1 | 43 | 1 | 43 | 1.48e-12 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1012660 | AT3G26980.1 | 74.257 | 101 | 26 | 0 | 1 | 101 | 1 | 101 | 5.64e-54 | 165 |
Msa1012660 | AT4G24990.2 | 62.376 | 101 | 38 | 0 | 1 | 101 | 1 | 101 | 5.27e-48 | 149 |
Msa1012660 | AT4G24990.1 | 62.376 | 101 | 38 | 0 | 1 | 101 | 1 | 101 | 5.27e-48 | 149 |
Msa1012660 | AT1G22050.1 | 53.125 | 96 | 44 | 1 | 3 | 97 | 4 | 99 | 1.66e-34 | 115 |
Msa1012660 | AT1G77870.1 | 54.369 | 103 | 45 | 1 | 1 | 101 | 1 | 103 | 1.93e-34 | 115 |
Msa1012660 | AT5G15460.2 | 54.651 | 86 | 39 | 0 | 7 | 92 | 8 | 93 | 1.59e-31 | 108 |
Msa1012660 | AT5G15460.1 | 54.651 | 86 | 39 | 0 | 7 | 92 | 8 | 93 | 1.59e-31 | 108 |
Msa1012660 | AT5G15460.4 | 54.651 | 86 | 39 | 0 | 7 | 92 | 8 | 93 | 1.59e-31 | 108 |
Msa1012660 | AT3G01050.2 | 50.000 | 86 | 43 | 0 | 7 | 92 | 8 | 93 | 3.26e-27 | 97.1 |
Msa1012660 | AT3G01050.3 | 50.000 | 86 | 43 | 0 | 7 | 92 | 8 | 93 | 3.26e-27 | 97.1 |
Msa1012660 | AT3G01050.1 | 50.000 | 86 | 43 | 0 | 7 | 92 | 8 | 93 | 3.26e-27 | 97.1 |
Msa1012660 | AT3G01050.4 | 50.000 | 86 | 43 | 0 | 7 | 92 | 8 | 93 | 3.26e-27 | 97.1 |
Msa1012660 | AT3G01050.5 | 50.000 | 86 | 43 | 0 | 7 | 92 | 8 | 93 | 3.26e-27 | 97.1 |
Msa1012660 | AT5G15460.3 | 54.902 | 51 | 23 | 0 | 42 | 92 | 17 | 67 | 8.25e-14 | 62.4 |
Find 27 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATAAATGCTGGCAAAATTT+TGG | 0.148008 | 7_1:+17989690 | Msa1012660:CDS |
TGTTGTCGTTCAGCCATCTT+TGG | 0.348360 | 7_1:+17989783 | Msa1012660:CDS |
TATCTGATCCATCGTATATA+CGG | 0.369078 | 7_1:-17986676 | None:intergenic |
ATATACGATGGATCAGATAT+TGG | 0.380125 | 7_1:+17986680 | Msa1012660:CDS |
GGCCAATGTAGAGTACCTTT+TGG | 0.427256 | 7_1:+17989730 | Msa1012660:CDS |
TGAAGTTGGTGAATAAGAAA+AGG | 0.430837 | 7_1:-17986705 | None:intergenic |
AGCTCCACCAATTCATCATC+AGG | 0.438663 | 7_1:-17986647 | None:intergenic |
CGAGATGCCTGATGATGAAT+TGG | 0.447255 | 7_1:+17986640 | Msa1012660:exon |
TTAATATCACTTGCTGCCCT+TGG | 0.457315 | 7_1:-17989664 | None:intergenic |
TCTTTGGCAAAAGCGAAAAC+AGG | 0.475441 | 7_1:+17989799 | Msa1012660:CDS |
GATATTAAACTCATAAATGC+TGG | 0.505519 | 7_1:+17989679 | Msa1012660:CDS |
GAAGTTGGTGAATAAGAAAA+GGG | 0.509171 | 7_1:-17986704 | None:intergenic |
TTCAACTGTTTCCATGCTCA+AGG | 0.518291 | 7_1:+17986724 | Msa1012660:CDS |
CCAGAAGGAAGCTCACCAAA+AGG | 0.552790 | 7_1:-17989745 | None:intergenic |
CTGTTTCCATGCTCAAGGAA+AGG | 0.562351 | 7_1:+17986729 | Msa1012660:CDS |
AGCATGGAAACAGTTGAAGT+TGG | 0.586596 | 7_1:-17986719 | None:intergenic |
TGCATGGTGATGACCCCAGA+AGG | 0.596413 | 7_1:-17989760 | None:intergenic |
CACCAAAAGGTACTCTACAT+TGG | 0.603291 | 7_1:-17989732 | None:intergenic |
TTGGAGAACAACAAGACGGT+GGG | 0.608984 | 7_1:+17989709 | Msa1012660:CDS |
GATGCCTGATGATGAATTGG+TGG | 0.609921 | 7_1:+17986643 | Msa1012660:exon |
AGACAAGAAAATTATACCAA+GGG | 0.613126 | 7_1:+17989648 | Msa1012660:intron |
CTGAAGTTCCGTATATACGA+TGG | 0.627299 | 7_1:+17986668 | Msa1012660:CDS |
TTGTTTGTAATAAGCAAACA+TGG | 0.646664 | 7_1:-17986488 | None:intergenic |
CAGACAAGAAAATTATACCA+AGG | 0.653948 | 7_1:+17989647 | Msa1012660:intron |
TTTGGAGAACAACAAGACGG+TGG | 0.663548 | 7_1:+17989708 | Msa1012660:CDS |
TGGCTGAACGACAACATGCA+TGG | 0.679504 | 7_1:-17989776 | None:intergenic |
TTTGTAATAAGCAAACATGG+TGG | 0.688014 | 7_1:-17986485 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTGTTTGAATTATTTAAAAT+AGG | + | chr7_1:17989323-17989342 | Msa1012660:intron | 10.0% |
!! | TATGTAATTAATTAACCTTT+GGG | - | chr7_1:17986770-17986789 | None:intergenic | 15.0% |
!! | TTATGTAATTAATTAACCTT+TGG | - | chr7_1:17986771-17986790 | None:intergenic | 15.0% |
!! | TTAATATGTTTATTCTCAAA+TGG | + | chr7_1:17987745-17987764 | Msa1012660:intron | 15.0% |
!! | TAATATGTTTATTCTCAAAT+GGG | + | chr7_1:17987746-17987765 | Msa1012660:intron | 15.0% |
!! | CAACAAATATTAATGTTTAT+CGG | - | chr7_1:17988047-17988066 | None:intergenic | 15.0% |
!!! | TATTTTGTACTTTTTTACTA+TGG | + | chr7_1:17989210-17989229 | Msa1012660:intron | 15.0% |
!!! | TTATTTAAAATAGGATAAGA+TGG | + | chr7_1:17989332-17989351 | Msa1012660:intron | 15.0% |
!!! | AAAAGACACATTTTTATAAA+TGG | - | chr7_1:17989622-17989641 | None:intergenic | 15.0% |
!! | AAATAATAGGGATTTAAATA+AGG | + | chr7_1:17989925-17989944 | Msa1012660:intron | 15.0% |
!! | TCAAAATAATCCAATTATAT+TGG | + | chr7_1:17989970-17989989 | Msa1012660:intron | 15.0% |
!! | AATATGTTTATTCTCAAATG+GGG | + | chr7_1:17987747-17987766 | Msa1012660:intron | 20.0% |
!!! | AAAATGCTTTTGTATTCAAT+TGG | + | chr7_1:17987850-17987869 | Msa1012660:intron | 20.0% |
!!! | AAATGCTTTTGTATTCAATT+GGG | + | chr7_1:17987851-17987870 | Msa1012660:intron | 20.0% |
!!! | ATGTCATAAGATTAGTTTTT+CGG | + | chr7_1:17987938-17987957 | Msa1012660:intron | 20.0% |
!!! | AAAGAAAACTTTACTGTTTT+TGG | + | chr7_1:17987998-17988017 | Msa1012660:intron | 20.0% |
!! | CGATAAACATTAATATTTGT+TGG | + | chr7_1:17988045-17988064 | Msa1012660:intron | 20.0% |
!!! | AATATTTGTTGGATTAGTAA+TGG | + | chr7_1:17988056-17988075 | Msa1012660:intron | 20.0% |
!! | ACGTATACTTATTAATTGTT+TGG | + | chr7_1:17988197-17988216 | Msa1012660:intron | 20.0% |
!!! | CTTGATTTTGTAAATTCATT+CGG | + | chr7_1:17988251-17988270 | Msa1012660:intron | 20.0% |
!! | TATAAATAAGTGGTTAGATT+TGG | + | chr7_1:17988364-17988383 | Msa1012660:intron | 20.0% |
!! | AAAAATATTCCTGTTTAACT+CGG | - | chr7_1:17988938-17988957 | None:intergenic | 20.0% |
!!! | AATATTTTTTTCCAACTGAT+TGG | + | chr7_1:17988949-17988968 | Msa1012660:intron | 20.0% |
!!! | TACTATTTCTTCTTCAATTT+GGG | + | chr7_1:17989384-17989403 | Msa1012660:intron | 20.0% |
!! | AATGGAATAATGAAATAGAA+TGG | - | chr7_1:17989501-17989520 | None:intergenic | 20.0% |
!! | AGTATAAATACATTAACATC+TGG | - | chr7_1:17989890-17989909 | None:intergenic | 20.0% |
!! | TTAAATCCCTATTATTTCAA+TGG | - | chr7_1:17989922-17989941 | None:intergenic | 20.0% |
!! | CACAATAATACCAATATAAT+TGG | - | chr7_1:17989983-17990002 | None:intergenic | 20.0% |
!! | AATAGACCTATCTTATAATA+TGG | + | chr7_1:17990069-17990088 | Msa1012660:intron | 20.0% |
!! | TTGTTTCCATATTATAAGAT+AGG | - | chr7_1:17990078-17990097 | None:intergenic | 20.0% |
!! | ACAACCAAAATTAATTAACT+AGG | - | chr7_1:17990250-17990269 | None:intergenic | 20.0% |
!! | TTCCCCTAAAATAAATAATA+TGG | - | chr7_1:17990323-17990342 | None:intergenic | 20.0% |
! | TTGTTTGTAATAAGCAAACA+TGG | - | chr7_1:17986491-17986510 | None:intergenic | 25.0% |
!!! | GTTTTGTTTTAGTTTTTGTG+TGG | + | chr7_1:17986868-17986887 | Msa1012660:intron | 25.0% |
!!! | ATTGAATTTTTAGCCGTTTT+TGG | + | chr7_1:17987147-17987166 | Msa1012660:intron | 25.0% |
!!! | TGTTAATGGATTCTGTTTTT+AGG | + | chr7_1:17987706-17987725 | Msa1012660:intron | 25.0% |
! | ATAAGATTCTTTGCTTTATC+TGG | + | chr7_1:17987894-17987913 | Msa1012660:intron | 25.0% |
!!! | TGTCATAAGATTAGTTTTTC+GGG | + | chr7_1:17987939-17987958 | Msa1012660:intron | 25.0% |
!! | GATTAGTAATGGAAACTATT+TGG | + | chr7_1:17988067-17988086 | Msa1012660:intron | 25.0% |
! | TAAGCATTTGAATATGAGTA+TGG | + | chr7_1:17988125-17988144 | Msa1012660:intron | 25.0% |
! | TTGAATATGAGTATGGAAAT+TGG | + | chr7_1:17988132-17988151 | Msa1012660:intron | 25.0% |
! | TACATTACCTAGATTTCTAT+TGG | + | chr7_1:17988305-17988324 | Msa1012660:intron | 25.0% |
! | TTATCAACCAATAGAAATCT+AGG | - | chr7_1:17988315-17988334 | None:intergenic | 25.0% |
!!! | AGATTTCTATTGGTTGATAA+AGG | + | chr7_1:17988315-17988334 | Msa1012660:intron | 25.0% |
! | TACATTTCGCTATAAATAAG+TGG | + | chr7_1:17988354-17988373 | Msa1012660:intron | 25.0% |
! | TAGTTTCATTATCAAAATGC+TGG | + | chr7_1:17988772-17988791 | Msa1012660:intron | 25.0% |
!!! | TCATCTTTTTGACTTTTTGT+TGG | + | chr7_1:17988870-17988889 | Msa1012660:intron | 25.0% |
!!! | TTTTGACTTTTTGTTGGAAA+AGG | + | chr7_1:17988876-17988895 | Msa1012660:intron | 25.0% |
! | ATATCTGTATCATGATATTC+TGG | + | chr7_1:17988994-17989013 | Msa1012660:intron | 25.0% |
!!! | GTTTTGTTAGTAACATTAAC+TGG | + | chr7_1:17989016-17989035 | Msa1012660:intron | 25.0% |
! | AGAGTTATTACATCATATGT+AGG | - | chr7_1:17989083-17989102 | None:intergenic | 25.0% |
! | AAAGGTAATACATTTAGAAG+AGG | - | chr7_1:17989112-17989131 | None:intergenic | 25.0% |
! | TATCAAATATAGGTCACTAA+AGG | - | chr7_1:17989130-17989149 | None:intergenic | 25.0% |
!!! | TTGTCTGGTTCTTTATATTA+TGG | + | chr7_1:17989182-17989201 | Msa1012660:intron | 25.0% |
! | ATAATCCAAACATATGCTAA+GGG | - | chr7_1:17989265-17989284 | None:intergenic | 25.0% |
! | AATAATCCAAACATATGCTA+AGG | - | chr7_1:17989266-17989285 | None:intergenic | 25.0% |
! | TTAGCATATGTTTGGATTAT+TGG | + | chr7_1:17989265-17989284 | Msa1012660:intron | 25.0% |
! | ATATGTTTGGATTATTGGAA+AGG | + | chr7_1:17989270-17989289 | Msa1012660:intron | 25.0% |
!! | CTACTATTTCTTCTTCAATT+TGG | + | chr7_1:17989383-17989402 | Msa1012660:intron | 25.0% |
! | AGACAAGAAAATTATACCAA+GGG | + | chr7_1:17989648-17989667 | Msa1012660:intron | 25.0% |
! | GATATTAAACTCATAAATGC+TGG | + | chr7_1:17989679-17989698 | Msa1012660:CDS | 25.0% |
! | AATAGGGATTTAAATAAGGA+AGG | + | chr7_1:17989929-17989948 | Msa1012660:intron | 25.0% |
!! | TTGGTATTATTGTGATTTTG+AGG | + | chr7_1:17989989-17990008 | Msa1012660:intron | 25.0% |
!! | TGGTATTATTGTGATTTTGA+GGG | + | chr7_1:17989990-17990009 | Msa1012660:intron | 25.0% |
! | TATAATATGGAAACAACTGT+TGG | + | chr7_1:17990082-17990101 | Msa1012660:intron | 25.0% |
! | CTCATTTATAAGCTGTTATT+TGG | - | chr7_1:17990226-17990245 | None:intergenic | 25.0% |
! | CAAATAACAGCTTATAAATG+AGG | + | chr7_1:17990224-17990243 | Msa1012660:intron | 25.0% |
!! | TAGTTACTCCTTTTAATCTT+AGG | + | chr7_1:17990296-17990315 | Msa1012660:intron | 25.0% |
!! | AGTTACTCCTTTTAATCTTA+GGG | + | chr7_1:17990297-17990316 | Msa1012660:intron | 25.0% |
!!! | AGGGCCATATTATTTATTTT+AGG | + | chr7_1:17990316-17990335 | Msa1012660:intron | 25.0% |
!!! | GGGCCATATTATTTATTTTA+GGG | + | chr7_1:17990317-17990336 | Msa1012660:intron | 25.0% |
!!! | GGCCATATTATTTATTTTAG+GGG | + | chr7_1:17990318-17990337 | Msa1012660:intron | 25.0% |
TTTGTAATAAGCAAACATGG+TGG | - | chr7_1:17986488-17986507 | None:intergenic | 30.0% | |
TATCTGATCCATCGTATATA+CGG | - | chr7_1:17986679-17986698 | None:intergenic | 30.0% | |
ATATACGATGGATCAGATAT+TGG | + | chr7_1:17986680-17986699 | Msa1012660:CDS | 30.0% | |
!! | GAAGTTGGTGAATAAGAAAA+GGG | - | chr7_1:17986707-17986726 | None:intergenic | 30.0% |
!! | TGAAGTTGGTGAATAAGAAA+AGG | - | chr7_1:17986708-17986727 | None:intergenic | 30.0% |
!!! | TTGTTTTAGTTTTTGTGTGG+TGG | + | chr7_1:17986871-17986890 | Msa1012660:intron | 30.0% |
!!! | TGTTTTAGTTTTTGTGTGGT+GGG | + | chr7_1:17986872-17986891 | Msa1012660:intron | 30.0% |
CCACTTTCTCAAATTACTAT+TGG | - | chr7_1:17987264-17987283 | None:intergenic | 30.0% | |
CCAATAGTAATTTGAGAAAG+TGG | + | chr7_1:17987261-17987280 | Msa1012660:intron | 30.0% | |
ACTGTTTGCATAAACTATCT+TGG | + | chr7_1:17987498-17987517 | Msa1012660:intron | 30.0% | |
!!! | TGGATTCTGTTTTTAGGAAA+AGG | + | chr7_1:17987712-17987731 | Msa1012660:intron | 30.0% |
TTCAATTGGGTAGTTGAATT+AGG | + | chr7_1:17987864-17987883 | Msa1012660:intron | 30.0% | |
!!! | ATAAGATTAGTTTTTCGGGT+TGG | + | chr7_1:17987943-17987962 | Msa1012660:intron | 30.0% |
! | TTTCTTGTCTTGTGTCATTA+AGG | + | chr7_1:17987973-17987992 | Msa1012660:intron | 30.0% |
TTTATCGGTATTTCCTGAAA+CGG | - | chr7_1:17988032-17988051 | None:intergenic | 30.0% | |
! | AGTAATGGAAACTATTTGGT+AGG | + | chr7_1:17988071-17988090 | Msa1012660:intron | 30.0% |
! | AATAAGTGGTTAGATTTGGT+TGG | + | chr7_1:17988368-17988387 | Msa1012660:intron | 30.0% |
AAAAATCCGCTACATAAACA+TGG | - | chr7_1:17988666-17988685 | None:intergenic | 30.0% | |
AGTCAAAAAGATGAGATTTC+TGG | - | chr7_1:17988864-17988883 | None:intergenic | 30.0% | |
TCTGAAAGAGAGTTTAGTAA+CGG | - | chr7_1:17989049-17989068 | None:intergenic | 30.0% | |
!! | GGGAGTATTCTATCAAATAT+AGG | - | chr7_1:17989140-17989159 | None:intergenic | 30.0% |
! | TTTTTCCCTTAGCATATGTT+TGG | + | chr7_1:17989257-17989276 | Msa1012660:intron | 30.0% |
AAGAAATAGTAGAAAGTGAG+TGG | - | chr7_1:17989375-17989394 | None:intergenic | 30.0% | |
TATTTCTTCTTCAATTTGGG+TGG | + | chr7_1:17989387-17989406 | Msa1012660:intron | 30.0% | |
ATGAGTGGAGCATAATATAA+TGG | - | chr7_1:17989519-17989538 | None:intergenic | 30.0% | |
AGAATATAGCACTAAAGCAA+CGG | - | chr7_1:17989565-17989584 | None:intergenic | 30.0% | |
AGAAAACCGCTAAGAAATAA+GGG | - | chr7_1:17989591-17989610 | None:intergenic | 30.0% | |
AAGAAAACCGCTAAGAAATA+AGG | - | chr7_1:17989592-17989611 | None:intergenic | 30.0% | |
CAGACAAGAAAATTATACCA+AGG | + | chr7_1:17989647-17989666 | Msa1012660:intron | 30.0% | |
! | CATAAATGCTGGCAAAATTT+TGG | + | chr7_1:17989690-17989709 | Msa1012660:CDS | 30.0% |
!! | AATTTTGGAGAACAACAAGA+CGG | + | chr7_1:17989705-17989724 | Msa1012660:CDS | 30.0% |
TATGCCACCATTGAAATAAT+AGG | + | chr7_1:17989912-17989931 | Msa1012660:intron | 30.0% | |
ATGCCACCATTGAAATAATA+GGG | + | chr7_1:17989913-17989932 | Msa1012660:intron | 30.0% | |
AATCCCTATTATTTCAATGG+TGG | - | chr7_1:17989919-17989938 | None:intergenic | 30.0% | |
CATGATAATTGACACAATCA+TGG | - | chr7_1:17990043-17990062 | None:intergenic | 30.0% | |
! | GAGGCCTAGTTAATTAATTT+TGG | + | chr7_1:17990243-17990262 | Msa1012660:intron | 30.0% |
AATATGGCCCTAAGATTAAA+AGG | - | chr7_1:17990307-17990326 | None:intergenic | 30.0% | |
AAGTTTGAACAGTTTCCAAA+CGG | - | chr7_1:17990431-17990450 | None:intergenic | 30.0% | |
AAAAATCCTTTCCTTGAGCA+TGG | - | chr7_1:17986738-17986757 | None:intergenic | 35.0% | |
! | AGGAAAGGATTTTTGCTGAA+TGG | + | chr7_1:17986744-17986763 | Msa1012660:CDS | 35.0% |
GCACATAAACTTCTGATTGA+AGG | + | chr7_1:17986981-17987000 | Msa1012660:intron | 35.0% | |
!!! | TTTTAGCCGTTTTTGGTTGT+TGG | + | chr7_1:17987154-17987173 | Msa1012660:intron | 35.0% |
!!! | TTTAGCCGTTTTTGGTTGTT+GGG | + | chr7_1:17987155-17987174 | Msa1012660:intron | 35.0% |
ATTTGCCCAACAACCAAAAA+CGG | - | chr7_1:17987163-17987182 | None:intergenic | 35.0% | |
AAATAAGCTGAACACGTCTT+AGG | + | chr7_1:17987532-17987551 | Msa1012660:intron | 35.0% | |
GCTTATTTGAACCTATCTAC+CGG | - | chr7_1:17987614-17987633 | None:intergenic | 35.0% | |
TTATGTTTGATGCTCTTTCG+TGG | + | chr7_1:17987680-17987699 | Msa1012660:intron | 35.0% | |
!!! | TTTGGTTTTTGAACCGTTTC+AGG | + | chr7_1:17988016-17988035 | Msa1012660:intron | 35.0% |
TTTATCCAGAAAAGGTTCAG+TGG | + | chr7_1:17988095-17988114 | Msa1012660:intron | 35.0% | |
TCACTTTCTTGTGGTTGTTA+TGG | + | chr7_1:17988453-17988472 | Msa1012660:intron | 35.0% | |
! | GGTGATGCAATTGACTATTT+TGG | + | chr7_1:17988474-17988493 | Msa1012660:intron | 35.0% |
AAATTGCCTCCATAGCATTA+TGG | + | chr7_1:17988572-17988591 | Msa1012660:intron | 35.0% | |
GCGGATAAAATAGTTGTTGT+TGG | - | chr7_1:17988618-17988637 | None:intergenic | 35.0% | |
GCAATACCATGTTTATGTAG+CGG | + | chr7_1:17988657-17988676 | Msa1012660:intron | 35.0% | |
CTATCGAAATCTTCTCTCTA+AGG | - | chr7_1:17988755-17988774 | None:intergenic | 35.0% | |
GCTACTTGCAATTATGTTTC+AGG | + | chr7_1:17988971-17988990 | Msa1012660:intron | 35.0% | |
!!! | TTTTTTACTATGGACGCATG+TGG | + | chr7_1:17989220-17989239 | Msa1012660:intron | 35.0% |
TATGCTAAGGGAAAAATCAC+AGG | - | chr7_1:17989253-17989272 | None:intergenic | 35.0% | |
TAGTAGAAAGTGAGTGGAAT+AGG | - | chr7_1:17989369-17989388 | None:intergenic | 35.0% | |
! | CGAGTCTTTTTCTCAAACAA+TGG | + | chr7_1:17989421-17989440 | Msa1012660:intron | 35.0% |
TCGAACGAAATGAAATGAGA+GGG | - | chr7_1:17989462-17989481 | None:intergenic | 35.0% | |
ATCGAACGAAATGAAATGAG+AGG | - | chr7_1:17989463-17989482 | None:intergenic | 35.0% | |
! | TCTTGTCCCTTATTTCTTAG+CGG | + | chr7_1:17989582-17989601 | Msa1012660:intron | 35.0% |
AGGGATTTAAATAAGGAAGG+AGG | + | chr7_1:17989932-17989951 | Msa1012660:intron | 35.0% | |
TGACATTTGTGTAAACCACA+GGG | - | chr7_1:17990360-17990379 | None:intergenic | 35.0% | |
CTAACATCTACAAAACCTTG+TGG | + | chr7_1:17990466-17990485 | Msa1012660:intron | 35.0% | |
CTGAAGTTCCGTATATACGA+TGG | + | chr7_1:17986668-17986687 | Msa1012660:CDS | 40.0% | |
AGCATGGAAACAGTTGAAGT+TGG | - | chr7_1:17986722-17986741 | None:intergenic | 40.0% | |
TTCAACTGTTTCCATGCTCA+AGG | + | chr7_1:17986724-17986743 | Msa1012660:CDS | 40.0% | |
! | ATTTTTGCTGAATGGCCCAA+AGG | + | chr7_1:17986752-17986771 | Msa1012660:CDS | 40.0% |
AACTCAAACCCTATGAAGCA+AGG | - | chr7_1:17987118-17987137 | None:intergenic | 40.0% | |
! | TATTGGTGTCTGACACATGT+CGG | - | chr7_1:17987247-17987266 | None:intergenic | 40.0% |
! | AAGTGTCAGTGCTATTGACA+TGG | + | chr7_1:17987370-17987389 | Msa1012660:intron | 40.0% |
!! | GCTATTGACATGGCTTTGTT+TGG | + | chr7_1:17987380-17987399 | Msa1012660:intron | 40.0% |
! | TGGTAGGCTTTATCCAGAAA+AGG | + | chr7_1:17988087-17988106 | Msa1012660:intron | 40.0% |
! | GGTTAGATTTGGTTGGCAAA+TGG | + | chr7_1:17988375-17988394 | Msa1012660:intron | 40.0% |
TGGTTGGCAAATGGTTGTAA+AGG | + | chr7_1:17988384-17988403 | Msa1012660:intron | 40.0% | |
GCTATGTCATCACTTTCTTG+TGG | + | chr7_1:17988444-17988463 | Msa1012660:intron | 40.0% | |
TTCACCATGCCATAATGCTA+TGG | - | chr7_1:17988584-17988603 | None:intergenic | 40.0% | |
AAACATGGTATTGCAGCCTA+TGG | - | chr7_1:17988651-17988670 | None:intergenic | 40.0% | |
TAGGCATTTAGAAGACCTGT+AGG | + | chr7_1:17988817-17988836 | Msa1012660:intron | 40.0% | |
AGGCATTTAGAAGACCTGTA+GGG | + | chr7_1:17988818-17988837 | Msa1012660:intron | 40.0% | |
ATTGCAAGTAGCCAATCAGT+TGG | - | chr7_1:17988963-17988982 | None:intergenic | 40.0% | |
TTGTAGACGGCAACATCAAA+GGG | - | chr7_1:17989160-17989179 | None:intergenic | 40.0% | |
TCTTCTTCAATTTGGGTGGA+TGG | + | chr7_1:17989391-17989410 | Msa1012660:intron | 40.0% | |
TTCAATTTGGGTGGATGGTA+TGG | + | chr7_1:17989396-17989415 | Msa1012660:intron | 40.0% | |
GATGGATATTAAGCGATGAG+TGG | - | chr7_1:17989534-17989553 | None:intergenic | 40.0% | |
AAAGCAACGGTAGTTAAGGA+TGG | - | chr7_1:17989552-17989571 | None:intergenic | 40.0% | |
CACTAAAGCAACGGTAGTTA+AGG | - | chr7_1:17989556-17989575 | None:intergenic | 40.0% | |
! | TTAATATCACTTGCTGCCCT+TGG | - | chr7_1:17989667-17989686 | None:intergenic | 40.0% |
!! | CACCAAAAGGTACTCTACAT+TGG | - | chr7_1:17989735-17989754 | None:intergenic | 40.0% |
!! | GTTTTCGCTTTTGCCAAAGA+TGG | - | chr7_1:17989799-17989818 | None:intergenic | 40.0% |
TCTTTGGCAAAAGCGAAAAC+AGG | + | chr7_1:17989799-17989818 | Msa1012660:CDS | 40.0% | |
GACATTTGTGTAAACCACAG+GGG | - | chr7_1:17990359-17990378 | None:intergenic | 40.0% | |
GTGACATTTGTGTAAACCAC+AGG | - | chr7_1:17990361-17990380 | None:intergenic | 40.0% | |
ATATGTGCTTGGGAATAGAG+GGG | - | chr7_1:17990390-17990409 | None:intergenic | 40.0% | |
GATATGTGCTTGGGAATAGA+GGG | - | chr7_1:17990391-17990410 | None:intergenic | 40.0% | |
AGATATGTGCTTGGGAATAG+AGG | - | chr7_1:17990392-17990411 | None:intergenic | 40.0% | |
TACAAAACGTTCAAGCCACA+AGG | - | chr7_1:17990484-17990503 | None:intergenic | 40.0% | |
! | TTGTGGCTTGAACGTTTTGT+AGG | + | chr7_1:17990483-17990502 | Msa1012660:intron | 40.0% |
! | CGAGATGCCTGATGATGAAT+TGG | + | chr7_1:17986640-17986659 | Msa1012660:exon | 45.0% |
! | GATGCCTGATGATGAATTGG+TGG | + | chr7_1:17986643-17986662 | Msa1012660:exon | 45.0% |
AGCTCCACCAATTCATCATC+AGG | - | chr7_1:17986650-17986669 | None:intergenic | 45.0% | |
CTGTTTCCATGCTCAAGGAA+AGG | + | chr7_1:17986729-17986748 | Msa1012660:CDS | 45.0% | |
TACATGTGTCTGTGTCGTGA+TGG | - | chr7_1:17987023-17987042 | None:intergenic | 45.0% | |
ATGAAGCAAGGACACAGACA+CGG | - | chr7_1:17987106-17987125 | None:intergenic | 45.0% | |
TGTCTGTGTCCTTGCTTCAT+AGG | + | chr7_1:17987106-17987125 | Msa1012660:intron | 45.0% | |
GTCTGTGTCCTTGCTTCATA+GGG | + | chr7_1:17987107-17987126 | Msa1012660:intron | 45.0% | |
GCTATGTAGCACTAACATGC+AGG | + | chr7_1:17987184-17987203 | Msa1012660:intron | 45.0% | |
AGTTTCCCAAGTGCTTATGC+CGG | + | chr7_1:17987592-17987611 | Msa1012660:intron | 45.0% | |
ATCTACCGGCATAAGCACTT+GGG | - | chr7_1:17987600-17987619 | None:intergenic | 45.0% | |
TATCTACCGGCATAAGCACT+TGG | - | chr7_1:17987601-17987620 | None:intergenic | 45.0% | |
AAGTGCTTATGCCGGTAGAT+AGG | + | chr7_1:17987600-17987619 | Msa1012660:intron | 45.0% | |
! | TCTATGCCTAAGGGCTTGTT+TGG | - | chr7_1:17987641-17987660 | None:intergenic | 45.0% |
AACAAGCCCTTAGGCATAGA+AGG | + | chr7_1:17987641-17987660 | Msa1012660:intron | 45.0% | |
ACAAGCCCTTAGGCATAGAA+GGG | + | chr7_1:17987642-17987661 | Msa1012660:intron | 45.0% | |
GAAACCCCTTCTATGCCTAA+GGG | - | chr7_1:17987650-17987669 | None:intergenic | 45.0% | |
AGAAACCCCTTCTATGCCTA+AGG | - | chr7_1:17987651-17987670 | None:intergenic | 45.0% | |
TGTTTGATGCTCTTTCGTGG+AGG | + | chr7_1:17987683-17987702 | Msa1012660:intron | 45.0% | |
!! | CTCTTTCGTGGAGGTGTTAA+TGG | + | chr7_1:17987692-17987711 | Msa1012660:intron | 45.0% |
! | GATCACCACTGAACCTTTTC+TGG | - | chr7_1:17988103-17988122 | None:intergenic | 45.0% |
TGGTTGTAAAGGTCACTGAG+AGG | + | chr7_1:17988395-17988414 | Msa1012660:intron | 45.0% | |
ACCATGCCATAATGCTATGG+AGG | - | chr7_1:17988581-17988600 | None:intergenic | 45.0% | |
ATCTTGTCTAACGTGACCAG+TGG | - | chr7_1:17988708-17988727 | None:intergenic | 45.0% | |
GGCATTTAGAAGACCTGTAG+GGG | + | chr7_1:17988819-17988838 | Msa1012660:intron | 45.0% | |
ACACTGCATCCGAGTTAAAC+AGG | + | chr7_1:17988926-17988945 | Msa1012660:intron | 45.0% | |
CTTGTAGACGGCAACATCAA+AGG | - | chr7_1:17989161-17989180 | None:intergenic | 45.0% | |
CTTTGATGTTGCCGTCTACA+AGG | + | chr7_1:17989159-17989178 | Msa1012660:intron | 45.0% | |
GAACCAGACAACCTTGTAGA+CGG | - | chr7_1:17989173-17989192 | None:intergenic | 45.0% | |
TTTGGAGAACAACAAGACGG+TGG | + | chr7_1:17989708-17989727 | Msa1012660:CDS | 45.0% | |
TTGGAGAACAACAAGACGGT+GGG | + | chr7_1:17989709-17989728 | Msa1012660:CDS | 45.0% | |
!! | GGCCAATGTAGAGTACCTTT+TGG | + | chr7_1:17989730-17989749 | Msa1012660:CDS | 45.0% |
! | CTTTTGGTGAGCTTCCTTCT+GGG | + | chr7_1:17989746-17989765 | Msa1012660:CDS | 45.0% |
! | TTTTGGTGAGCTTCCTTCTG+GGG | + | chr7_1:17989747-17989766 | Msa1012660:CDS | 45.0% |
TGTTGTCGTTCAGCCATCTT+TGG | + | chr7_1:17989783-17989802 | Msa1012660:CDS | 45.0% | |
ATTTGTGTAAACCACAGGGG+AGG | - | chr7_1:17990356-17990375 | None:intergenic | 45.0% | |
TATGTGCTTGGGAATAGAGG+GGG | - | chr7_1:17990389-17990408 | None:intergenic | 45.0% | |
TGTAGGGGAGATATGTGCTT+GGG | - | chr7_1:17990400-17990419 | None:intergenic | 45.0% | |
AACATGCAGGTGCAAACACC+TGG | + | chr7_1:17987197-17987216 | Msa1012660:intron | 50.0% | |
AGGTGCAAACACCTGGACAT+TGG | + | chr7_1:17987204-17987223 | Msa1012660:intron | 50.0% | |
ACACATCGTGTCCAATGTCC+AGG | - | chr7_1:17987218-17987237 | None:intergenic | 50.0% | |
GCCAATCCAAACAAGCCCTT+AGG | + | chr7_1:17987632-17987651 | Msa1012660:intron | 50.0% | |
! | GCCTAAGGGCTTGTTTGGAT+TGG | - | chr7_1:17987636-17987655 | None:intergenic | 50.0% |
CAAGCCCTTAGGCATAGAAG+GGG | + | chr7_1:17987643-17987662 | Msa1012660:intron | 50.0% | |
GCCTCCATAGCATTATGGCA+TGG | + | chr7_1:17988577-17988596 | Msa1012660:intron | 50.0% | |
ATCCGCCATGTTTCCACCAT+AGG | + | chr7_1:17988632-17988651 | Msa1012660:intron | 50.0% | |
! | AGCCTATGGTGGAAACATGG+CGG | - | chr7_1:17988637-17988656 | None:intergenic | 50.0% |
! | TGCAGCCTATGGTGGAAACA+TGG | - | chr7_1:17988640-17988659 | None:intergenic | 50.0% |
CATGGTATTGCAGCCTATGG+TGG | - | chr7_1:17988648-17988667 | None:intergenic | 50.0% | |
TTGTCTAACGTGACCAGTGG+CGG | - | chr7_1:17988705-17988724 | None:intergenic | 50.0% | |
! | AGTCTCGTCTAAGGTGGTCT+AGG | + | chr7_1:17988798-17988817 | Msa1012660:intron | 50.0% |
GTACTAACTAGTGCCCCTAC+AGG | - | chr7_1:17988835-17988854 | None:intergenic | 50.0% | |
TTGCCGTCTACAAGGTTGTC+TGG | + | chr7_1:17989167-17989186 | Msa1012660:intron | 50.0% | |
CCAGAAGGAAGCTCACCAAA+AGG | - | chr7_1:17989748-17989767 | None:intergenic | 50.0% | |
! | CCTTTTGGTGAGCTTCCTTC+TGG | + | chr7_1:17989745-17989764 | Msa1012660:CDS | 50.0% |
TGGCTGAACGACAACATGCA+TGG | - | chr7_1:17989779-17989798 | None:intergenic | 50.0% | |
CTGTAGGGGAGATATGTGCT+TGG | - | chr7_1:17990401-17990420 | None:intergenic | 50.0% | |
CAAACGGTGCAAGACTGTAG+GGG | - | chr7_1:17990415-17990434 | None:intergenic | 50.0% | |
CCAAACGGTGCAAGACTGTA+GGG | - | chr7_1:17990416-17990435 | None:intergenic | 50.0% | |
TCCAAACGGTGCAAGACTGT+AGG | - | chr7_1:17990417-17990436 | None:intergenic | 50.0% | |
AAGGACACAGACACGGACAC+TGG | - | chr7_1:17987099-17987118 | None:intergenic | 55.0% | |
TTGCTGCCATAATCCGCCAC+TGG | + | chr7_1:17988689-17988708 | Msa1012660:intron | 55.0% | |
!! | ACGTGACCAGTGGCGGATTA+TGG | - | chr7_1:17988698-17988717 | None:intergenic | 55.0% |
! | TGCTGGCTGAGTCTCGTCTA+AGG | + | chr7_1:17988789-17988808 | Msa1012660:intron | 55.0% |
TGGCTGAGTCTCGTCTAAGG+TGG | + | chr7_1:17988792-17988811 | Msa1012660:intron | 55.0% | |
! | TGCATGGTGATGACCCCAGA+AGG | - | chr7_1:17989763-17989782 | None:intergenic | 55.0% |
AATTACACGCACCTCCCCTG+TGG | + | chr7_1:17990342-17990361 | Msa1012660:intron | 55.0% | |
CCCTACAGTCTTGCACCGTT+TGG | + | chr7_1:17990413-17990432 | Msa1012660:intron | 55.0% | |
CATCCCTGCAGCGATTGAGA+CGG | + | chr7_1:17990510-17990529 | Msa1012660:intron | 55.0% | |
TTGCCGTCTCAATCGCTGCA+GGG | - | chr7_1:17990516-17990535 | None:intergenic | 55.0% | |
TTTGCCGTCTCAATCGCTGC+AGG | - | chr7_1:17990517-17990536 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 17986337 | 17990607 | 17986337 | ID=Msa1012660;Name=Msa1012660 |
chr7_1 | mRNA | 17986337 | 17990607 | 17986337 | ID=Msa1012660-mRNA-1;Parent=Msa1012660;Name=Msa1012660-mRNA-1;_AED=0.24;_eAED=0.24;_QI=307|0.33|0.5|0.5|1|1|4|0|113 |
chr7_1 | exon | 17986337 | 17986773 | 17986337 | ID=Msa1012660-mRNA-1:exon:4515;Parent=Msa1012660-mRNA-1 |
chr7_1 | exon | 17989650 | 17989820 | 17989650 | ID=Msa1012660-mRNA-1:exon:4516;Parent=Msa1012660-mRNA-1 |
chr7_1 | exon | 17989891 | 17989898 | 17989891 | ID=Msa1012660-mRNA-1:exon:4517;Parent=Msa1012660-mRNA-1 |
chr7_1 | exon | 17990575 | 17990607 | 17990575 | ID=Msa1012660-mRNA-1:exon:4518;Parent=Msa1012660-mRNA-1 |
chr7_1 | five_prime_UTR | 17986337 | 17986643 | 17986337 | ID=Msa1012660-mRNA-1:five_prime_utr;Parent=Msa1012660-mRNA-1 |
chr7_1 | CDS | 17986644 | 17986773 | 17986644 | ID=Msa1012660-mRNA-1:cds;Parent=Msa1012660-mRNA-1 |
chr7_1 | CDS | 17989650 | 17989820 | 17989650 | ID=Msa1012660-mRNA-1:cds;Parent=Msa1012660-mRNA-1 |
chr7_1 | CDS | 17989891 | 17989898 | 17989891 | ID=Msa1012660-mRNA-1:cds;Parent=Msa1012660-mRNA-1 |
chr7_1 | CDS | 17990575 | 17990607 | 17990575 | ID=Msa1012660-mRNA-1:cds;Parent=Msa1012660-mRNA-1 |
Gene Sequence |
Protein sequence |