AlfalfaGEDB | Msa0739680

M. sativa cultivar zhongmu-4 / Msa0739680

KEGG: K13429
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031974 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901700
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739680	AAQ73158.1	94.032	620	23	1	1	606	1	620	0.0	1197

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739680	sp\|Q6UD73\|LYK3_MEDTR	57.051	624	241	8	4	606	3	620	0.0	682

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739680	Q6UD74	94.032	620	23	1	1	606	1	620	0.0	1197

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006040	Msa0739680	0.801463	8.899333e-49	-8.615850e-47
Msa0028660	Msa0739680	0.804184	2.439675e-49	-8.615850e-47
Msa0032610	Msa0739680	0.800880	1.171147e-48	-8.615850e-47
Msa0039330	Msa0739680	0.807682	4.487450e-50	-8.615850e-47
Msa0048100	Msa0739680	0.806416	8.315344e-50	-8.615850e-47
Msa0066390	Msa0739680	0.807007	6.237059e-50	-8.615850e-47
Msa0092990	Msa0739680	0.824777	6.717643e-54	-8.615850e-47
Msa0111310	Msa0739680	0.831830	1.336078e-55	-8.615850e-47
Msa0152170	Msa0739680	0.808384	3.180833e-50	-8.615850e-47
Msa0172780	Msa0739680	0.801231	9.928545e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739680	MtrunA17_Chr5g0439561	94.032	620	23	1	1	606	19	638	0.0	1196
Msa0739680	MtrunA17_Chr3g0119241	63.948	613	203	4	8	606	13	621	0.0	788
Msa0739680	MtrunA17_Chr5g0439601	58.500	600	208	6	18	587	19	607	0.0	683
Msa0739680	MtrunA17_Chr5g0439631	57.051	624	241	8	4	606	3	620	0.0	682
Msa0739680	MtrunA17_Chr5g0439571	61.699	624	182	12	4	606	41	628	0.0	678
Msa0739680	MtrunA17_Chr5g0439801	59.000	600	189	8	1	587	1	556	0.0	672
Msa0739680	MtrunA17_Chr5g0439701	55.072	621	250	6	4	606	3	612	0.0	659
Msa0739680	MtrunA17_Chr2g0289131	57.440	625	227	12	6	606	7	616	0.0	657
Msa0739680	MtrunA17_Chr5g0439621	55.310	452	157	5	170	587	294	734	2.14e-155	464
Msa0739680	MtrunA17_Chr5g0439621	55.474	274	105	2	1	257	26	299	1.51e-90	295

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739680	AT3G21630.1	54.936	628	247	10	4	606	1	617	0.0	671
Msa0739680	AT1G51940.1	45.289	329	168	7	290	606	323	651	5.82e-83	273
Msa0739680	AT5G38560.1	36.364	407	225	12	209	591	228	624	9.06e-69	236
Msa0739680	AT5G54590.3	38.636	396	200	11	211	581	2	379	9.42e-69	230
Msa0739680	AT5G54590.4	38.636	396	200	11	211	581	2	379	9.42e-69	230
Msa0739680	AT5G54590.2	38.636	396	200	11	211	581	2	379	9.42e-69	230
Msa0739680	AT4G29990.1	44.097	288	147	5	296	578	564	842	3.85e-65	229
Msa0739680	AT1G70460.1	36.634	404	220	10	210	580	228	628	5.49e-65	226
Msa0739680	AT1G68690.1	37.245	392	214	11	212	583	275	654	6.00e-65	226
Msa0739680	AT1G68690.3	37.245	392	214	11	212	583	275	654	6.00e-65	226

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Find 138 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGATGTATATGCTTT+TGG	0.214009	5_1:+58047992	Msa0739680:CDS
AAAATCGGTCAAGGTGGTTT+CGG	0.392277	5_1:+58046827	Msa0739680:CDS
AAAGAATCCTCAGGTCTAAG+AGG	0.529611	5_1:-58045389	None:intergenic
AAAGGAGCTGTGATAATGGG+TGG	0.727285	5_1:+58048043	Msa0739680:CDS
AAAGTGGAATATATTGTATT+GGG	0.412218	5_1:+58048723	Msa0739680:three_prime_UTR
AAATCTAATGTCTGGAAGAT+AGG	0.409760	5_1:+58048565	Msa0739680:CDS
AACCTTTGTCATGGTCTAGC+AGG	0.415986	5_1:+58047549	Msa0739680:CDS
AACTTAGGCCAACATCTACG+CGG	0.750211	5_1:+58047411	Msa0739680:CDS
AACTTCAACTACTGAGGATT+GGG	0.417205	5_1:+58048508	Msa0739680:CDS
AACTTGACCGAAGATCGCGC+TGG	0.673348	5_1:-58046570	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCTATGGAAAATGGAAATA+TGG	-	chr5_1:58044805-58044824	None:intergenic	30.0%
TTCTGCTATTAAGGATTTAG+AGG	-	chr5_1:58044934-58044953	None:intergenic	30.0%
CATTCACTCTTGTAAAAGAT+TGG	-	chr5_1:58045118-58045137	None:intergenic	30.0%
GTATCAGGAATATCATTTGA+TGG	-	chr5_1:58045290-58045309	None:intergenic	30.0%
TCAAATGATATTCCTGATAC+TGG	+	chr5_1:58045290-58045309	Msa0739680:CDS	30.0%
ACATTAAGAATTCCAGTATC+AGG	-	chr5_1:58045305-58045324	None:intergenic	30.0%
GTTACTGTTAATTGTTCTTG+TGG	+	chr5_1:58045323-58045342	Msa0739680:CDS	30.0%
CATAATGAAGTTGAAGATAC+AGG	-	chr5_1:58046064-58046083	None:intergenic	30.0%
CTGTATCTTCAACTTCATTA+TGG	+	chr5_1:58046062-58046081	Msa0739680:intron	30.0%
TGAAAAGGAGAATGAAAACA+AGG	-	chr5_1:58046251-58046270	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	58044778	58048818	58044778	ID=Msa0739680;Name=Msa0739680
chr5_1	mRNA	58044778	58048818	58044778	ID=Msa0739680-mRNA-1;Parent=Msa0739680;Name=Msa0739680-mRNA-1;_AED=0.21;_eAED=0.21;_QI=107\|0.88\|1\|1\|1\|1\|10\|232\|606
chr5_1	exon	58044778	58045518	58044778	ID=Msa0739680-mRNA-1:exon:16533;Parent=Msa0739680-mRNA-1
chr5_1	exon	58046438	58046599	58046438	ID=Msa0739680-mRNA-1:exon:16534;Parent=Msa0739680-mRNA-1
chr5_1	exon	58046687	58046880	58046687	ID=Msa0739680-mRNA-1:exon:16535;Parent=Msa0739680-mRNA-1
chr5_1	exon	58047094	58047183	58047094	ID=Msa0739680-mRNA-1:exon:16536;Parent=Msa0739680-mRNA-1
chr5_1	exon	58047345	58047438	58047345	ID=Msa0739680-mRNA-1:exon:16537;Parent=Msa0739680-mRNA-1
chr5_1	exon	58047543	58047694	58047543	ID=Msa0739680-mRNA-1:exon:16538;Parent=Msa0739680-mRNA-1
chr5_1	exon	58047780	58047874	58047780	ID=Msa0739680-mRNA-1:exon:16539;Parent=Msa0739680-mRNA-1
chr5_1	exon	58047967	58048102	58047967	ID=Msa0739680-mRNA-1:exon:16540;Parent=Msa0739680-mRNA-1
chr5_1	exon	58048242	58048340	58048242	ID=Msa0739680-mRNA-1:exon:16541;Parent=Msa0739680-mRNA-1
chr5_1	exon	58048422	58048818	58048422	ID=Msa0739680-mRNA-1:exon:16542;Parent=Msa0739680-mRNA-1
chr5_1	five_prime_UTR	58044778	58044884	58044778	ID=Msa0739680-mRNA-1:five_prime_utr;Parent=Msa0739680-mRNA-1
chr5_1	CDS	58044885	58045518	58044885	ID=Msa0739680-mRNA-1:cds;Parent=Msa0739680-mRNA-1
chr5_1	CDS	58046438	58046599	58046438	ID=Msa0739680-mRNA-1:cds;Parent=Msa0739680-mRNA-1
chr5_1	CDS	58046687	58046880	58046687	ID=Msa0739680-mRNA-1:cds;Parent=Msa0739680-mRNA-1
chr5_1	CDS	58047094	58047183	58047094	ID=Msa0739680-mRNA-1:cds;Parent=Msa0739680-mRNA-1
chr5_1	CDS	58047345	58047438	58047345	ID=Msa0739680-mRNA-1:cds;Parent=Msa0739680-mRNA-1
chr5_1	CDS	58047543	58047694	58047543	ID=Msa0739680-mRNA-1:cds;Parent=Msa0739680-mRNA-1
chr5_1	CDS	58047780	58047874	58047780	ID=Msa0739680-mRNA-1:cds;Parent=Msa0739680-mRNA-1
chr5_1	CDS	58047967	58048102	58047967	ID=Msa0739680-mRNA-1:cds;Parent=Msa0739680-mRNA-1
chr5_1	CDS	58048242	58048340	58048242	ID=Msa0739680-mRNA-1:cds;Parent=Msa0739680-mRNA-1
chr5_1	CDS	58048422	58048586	58048422	ID=Msa0739680-mRNA-1:cds;Parent=Msa0739680-mRNA-1
chr5_1	three_prime_UTR	58048587	58048818	58048587	ID=Msa0739680-mRNA-1:three_prime_utr;Parent=Msa0739680-mRNA-1

Gene Sequence

>Msa0739680

ATGAAACCAATCAAATTCAGATTATCATTTTTATTCTTGTTACTAGCCTCTAAATCCTTAATAGCAGAATCAAAATGTAGCAAAACTTGTAACATAGCTTTAGCTTCCTATTATCTACAAGATGATACAAATCTCACATATGTTTCAAACATCATGCAATCAAACCTTGTTACAAAACCAGAAGATATTGTTAGTTACAACACAGACACAATACAAAACAAAGATTCTGTCCAATCTTTTACAAGAGTGAATGTTCCATTCCCATGTGATTGCATACAAGATGAGTTTCTAGGCCATATATTTCAATACCAAGTTGCTACAAGAGATACTTATTTATCTGTTGCTAGTAACAATTATTCCAATTTGACTACTGCTGAATGGTTGAAAAACTCCAATACCTATCCATCAAATGATATTCCTGATACTGGAATTCTTAATGTTACTGTTAATTGTTCTTGTGGGAACAGTGATGTTTCCAAGGATTATGGTTTGTTTATTACTTATCCTCTTAGACCTGAGGATTCTTTGGAATTGATTTCTAATAAGACTGAGATTGATGCTGAGTTGCTGCAAAAGTATAACCCTGGTGTGAATTTTAGTCAAGGGAGTGGTTTGGTTTATATTCCTGGGAAAGGTCTATCAGGTGGAGTTATAACTGGAATATCTGTTGGAGCAGTAGCAGGACTAATGCTATTATCATTTTGTATTTATGTCACGTATTACCGAAAGAAGAAGGTATGGAAGCAAGAATTTCTTTCAGAAGAATCCAGCGCGATCTTCGGTCAAGTTAAGAATGATGAAGTCTCCGGTAATGCTACATATGGAACTTCAGATTCTGCGAGTCCTGCTAATATGATTGGAATTAGGGTGGAAAAATCAGGAGAGTTTTCATATGAAGAACTAGCCAATGCCACAAATAACTTCAATATGGCTAACAAAATCGGTCAAGGTGGTTTCGGTGAAGTCTATTACGCAGAGCTGAATGGCGAGAAAGCTGCAATAAAAAAGATGGACATGAAAGCAACAAAAGAATTTCTTGCTGAGTTGAAGGTGTTGACGCGTGTTCATCACGTGAACCTGGTACGCTTGATTGGATATTGCGTTGAGGGATCCCTTTTCCTTGTCTACGAATACATTGATAATGGAAACTTAGGCCAACATCTACGCGGTTCAGATGGAGAACCTTTGTCATGGTCTAGCAGGGTTAAAATTGCTCTGGATTCAGCCAGAGGTCTTGAATACATTCATGAACATACCGTCCCTACATATATTCATCGCGACATAAAGTCAGAAAATATTTTATTAGACAAAAACTTCTGTGCAAAGGTTGCAGACTTTGGATTAACCAAGCTGATTGATGTTGGAATTTCATCAGTTCCCACTGCTAATATGGCTGGCACATTTGGCTACATGCCACCAGAATATGCATATGGTAGTGTTTCTTCAAAAATAGATGTATATGCTTTTGGAGTAGTTCTTTATGAACTAATTTCTGCTAAAGGAGCTGTGATAATGGGTGGTGATTCTGGTGCTGATTTAAAGGGCCTTGTAGTTTTGTTTGATGAAGTTCTTGATCAGCCACATCCTATAGAAGGTCTTAAAGAACTGGTTGATCCTAGGCTTGGAGATAACTATCCAATTGATCACGTTTTCAAGATGGCACAACTTGCCAAAGTATGTACAAATAGTGACCCACAGCAACGTCCAAATATGAGTTCTGTTGTAGTTGCTCTTACCACACTAACTTCAACTACTGAGGATTGGGATATCACTTCTATATTTAAAAATCCAAATCTTGTAAATCTAATGTCTGGAAGATAG

Protein sequence

>Msa0739680

MKPIKFRLSFLFLLLASKSLIAESKCSKTCNIALASYYLQDDTNLTYVSNIMQSNLVTKPEDIVSYNTDTIQNKDSVQSFTRVNVPFPCDCIQDEFLGHIFQYQVATRDTYLSVASNNYSNLTTAEWLKNSNTYPSNDIPDTGILNVTVNCSCGNSDVSKDYGLFITYPLRPEDSLELISNKTEIDAELLQKYNPGVNFSQGSGLVYIPGKGLSGGVITGISVGAVAGLMLLSFCIYVTYYRKKKVWKQEFLSEESSAIFGQVKNDEVSGNATYGTSDSASPANMIGIRVEKSGEFSYEELANATNNFNMANKIGQGGFGEVYYAELNGEKAAIKKMDMKATKEFLAELKVLTRVHHVNLVRLIGYCVEGSLFLVYEYIDNGNLGQHLRGSDGEPLSWSSRVKIALDSARGLEYIHEHTVPTYIHRDIKSENILLDKNFCAKVADFGLTKLIDVGISSVPTANMAGTFGYMPPEYAYGSVSSKIDVYAFGVVLYELISAKGAVIMGGDSGADLKGLVVLFDEVLDQPHPIEGLKELVDPRLGDNYPIDHVFKMAQLAKVCTNSDPQQRPNMSSVVVALTTLTSTTEDWDITSIFKNPNLVNLMSGR*