Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1016600 | XP_013448322.1 | 95.899 | 317 | 10 | 3 | 1 | 317 | 1 | 314 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1016600 | sp|Q7XT42|SPL7_ORYSJ | 51.174 | 213 | 77 | 5 | 101 | 286 | 53 | 265 | 1.35e-54 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1016600 | A0A072TXZ6 | 95.899 | 317 | 10 | 3 | 1 | 317 | 1 | 314 | 0.0 | 624 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1016600 | TF | SBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016120 | Msa1016600 | 0.813138 | 2.979004e-51 | -8.615850e-47 |
| Msa0017510 | Msa1016600 | 0.813577 | 2.385523e-51 | -8.615850e-47 |
| Msa0072370 | Msa1016600 | 0.806215 | 9.167726e-50 | -8.615850e-47 |
| Msa0109880 | Msa1016600 | 0.814832 | 1.260538e-51 | -8.615850e-47 |
| Msa0110970 | Msa1016600 | 0.802677 | 5.009205e-49 | -8.615850e-47 |
| Msa0739580 | Msa1016600 | 0.809612 | 1.736149e-50 | -8.615850e-47 |
| Msa0828830 | Msa1016600 | 0.818669 | 1.737122e-52 | -8.615850e-47 |
| Msa0156250 | Msa1016600 | 0.821757 | 3.407685e-53 | -8.615850e-47 |
| Msa0157290 | Msa1016600 | 0.813653 | 2.296019e-51 | -8.615850e-47 |
| Msa0185490 | Msa1016600 | 0.812989 | 3.211579e-51 | -8.615850e-47 |
| Msa0392420 | Msa1016600 | 0.817374 | 3.409493e-52 | -8.615850e-47 |
| Msa0392460 | Msa1016600 | 0.810880 | 9.252279e-51 | -8.615850e-47 |
| Msa0392490 | Msa1016600 | 0.825839 | 3.766426e-54 | -8.615850e-47 |
| Msa0451400 | Msa1016600 | 0.818742 | 1.672132e-52 | -8.615850e-47 |
| Msa1016600 | Msa1037900 | 0.814127 | 1.804710e-51 | -8.615850e-47 |
| Msa1016600 | Msa1041530 | 0.819483 | 1.134220e-52 | -8.615850e-47 |
| Msa1016600 | Msa1081570 | 0.825904 | 3.634773e-54 | -8.615850e-47 |
| Msa1016600 | Msa1127140 | 0.837082 | 6.412749e-57 | -8.615850e-47 |
| Msa1016600 | Msa1129960 | 0.815402 | 9.415483e-52 | -8.615850e-47 |
| Msa1016600 | Msa1166400 | 0.822671 | 2.091457e-53 | -8.615850e-47 |
| Msa1016600 | Msa1176160 | 0.818244 | 2.169358e-52 | -8.615850e-47 |
| Msa1016600 | Msa1201160 | 0.819647 | 1.040845e-52 | -8.615850e-47 |
| Msa1016600 | Msa1228190 | 0.800889 | 1.165838e-48 | -8.615850e-47 |
| Msa1016600 | Msa1294290 | 0.810407 | 1.170367e-50 | -8.615850e-47 |
| Msa1016600 | Msa1307190 | 0.804507 | 2.089981e-49 | -8.615850e-47 |
| Msa1016600 | Msa1374550 | 0.831172 | 1.940198e-55 | -8.615850e-47 |
| Msa1016600 | Msa1379970 | 0.827128 | 1.855754e-54 | -8.615850e-47 |
| Msa1016600 | Msa1406780 | 0.814270 | 1.677875e-51 | -8.615850e-47 |
| Msa1016600 | Msa1420060 | 0.802077 | 6.657935e-49 | -8.615850e-47 |
| Msa1016600 | Msa1421550 | 0.870307 | 1.611049e-66 | -8.615850e-47 |
| Msa1016600 | Msa1423460 | 0.816606 | 5.070068e-52 | -8.615850e-47 |
| Msa1016600 | Msa1431850 | 0.814884 | 1.227378e-51 | -8.615850e-47 |
| Msa1016600 | Msa1461060 | 0.800859 | 1.182612e-48 | -8.615850e-47 |
| Msa0329620 | Msa1016600 | 0.811263 | 7.642309e-51 | -8.615850e-47 |
| Msa0344570 | Msa1016600 | 0.812845 | 3.453510e-51 | -8.615850e-47 |
| Msa0359250 | Msa1016600 | 0.824791 | 6.666018e-54 | -8.615850e-47 |
| Msa0487570 | Msa1016600 | 0.824115 | 9.614962e-54 | -8.615850e-47 |
| Msa0487630 | Msa1016600 | 0.836743 | 7.822778e-57 | -8.615850e-47 |
| Msa0867350 | Msa1016600 | 0.801491 | 8.780619e-49 | -8.615850e-47 |
| Msa0880140 | Msa1016600 | 0.811820 | 5.781945e-51 | -8.615850e-47 |
| Msa0898730 | Msa1016600 | 0.810288 | 1.241770e-50 | -8.615850e-47 |
| Msa0944760 | Msa1016600 | 0.819701 | 1.011526e-52 | -8.615850e-47 |
| Msa0979510 | Msa1016600 | 0.808773 | 2.627294e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1016600 | MtrunA17_Chr7g0231911 | 95.899 | 317 | 10 | 3 | 1 | 317 | 1 | 314 | 0.0 | 624 |
| Msa1016600 | MtrunA17_Chr3g0122411 | 53.957 | 139 | 60 | 2 | 98 | 236 | 115 | 249 | 1.72e-41 | 149 |
| Msa1016600 | MtrunA17_Chr4g0046991 | 72.840 | 81 | 22 | 0 | 152 | 232 | 73 | 153 | 1.24e-36 | 129 |
| Msa1016600 | MtrunA17_Chr7g0258471 | 51.145 | 131 | 61 | 1 | 104 | 231 | 91 | 221 | 7.40e-36 | 133 |
| Msa1016600 | MtrunA17_Chr2g0282521 | 67.778 | 90 | 28 | 1 | 138 | 227 | 51 | 139 | 3.63e-35 | 124 |
| Msa1016600 | MtrunA17_Chr5g0420051 | 51.111 | 135 | 60 | 2 | 98 | 229 | 127 | 258 | 5.14e-35 | 132 |
| Msa1016600 | MtrunA17_Chr8g0360361 | 68.235 | 85 | 27 | 0 | 152 | 236 | 65 | 149 | 7.58e-35 | 125 |
| Msa1016600 | MtrunA17_Chr3g0132091 | 55.000 | 100 | 45 | 0 | 134 | 233 | 55 | 154 | 2.09e-34 | 128 |
| Msa1016600 | MtrunA17_Chr8g0334671 | 67.857 | 84 | 27 | 0 | 145 | 228 | 180 | 263 | 2.62e-34 | 127 |
| Msa1016600 | MtrunA17_Chr4g0061651 | 53.175 | 126 | 55 | 2 | 101 | 225 | 74 | 196 | 3.74e-34 | 130 |
| Msa1016600 | MtrunA17_Chr2g0308321 | 60.377 | 106 | 36 | 2 | 146 | 251 | 165 | 264 | 7.08e-34 | 130 |
| Msa1016600 | MtrunA17_Chr7g0270541 | 58.182 | 110 | 45 | 1 | 128 | 236 | 120 | 229 | 1.89e-33 | 130 |
| Msa1016600 | MtrunA17_Chr8g0386271 | 55.556 | 99 | 44 | 0 | 138 | 236 | 85 | 183 | 7.56e-33 | 125 |
| Msa1016600 | MtrunA17_Chr2g0302791 | 51.938 | 129 | 51 | 3 | 122 | 246 | 116 | 237 | 9.15e-32 | 125 |
| Msa1016600 | MtrunA17_Chr7g0224821 | 65.000 | 80 | 28 | 0 | 152 | 231 | 77 | 156 | 5.28e-31 | 119 |
| Msa1016600 | MtrunA17_Chr1g0194121 | 58.947 | 95 | 39 | 0 | 137 | 231 | 132 | 226 | 7.74e-31 | 122 |
| Msa1016600 | MtrunA17_Chr8g0377421 | 38.983 | 177 | 75 | 5 | 87 | 243 | 58 | 221 | 1.56e-29 | 114 |
| Msa1016600 | MtrunA17_Chr1g0162871 | 66.667 | 81 | 27 | 0 | 152 | 232 | 104 | 184 | 1.88e-29 | 118 |
| Msa1016600 | MtrunA17_Chr8g0377401 | 45.985 | 137 | 51 | 2 | 99 | 227 | 116 | 237 | 7.00e-29 | 111 |
| Msa1016600 | MtrunA17_Chr2g0286661 | 50.515 | 97 | 48 | 0 | 134 | 230 | 85 | 181 | 1.62e-21 | 95.1 |
| Msa1016600 | MtrunA17_Chr1g0175031 | 47.959 | 98 | 48 | 1 | 104 | 198 | 23 | 120 | 5.48e-19 | 81.6 |
| Msa1016600 | MtrunA17_Chr2g0317041 | 55.714 | 70 | 30 | 1 | 129 | 198 | 77 | 145 | 1.13e-16 | 75.9 |
| Msa1016600 | MtrunA17_Chr8g0377431 | 38.889 | 108 | 64 | 1 | 98 | 205 | 99 | 204 | 1.56e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1016600 | AT1G27370.6 | 54.839 | 124 | 55 | 1 | 103 | 225 | 126 | 249 | 5.40e-38 | 138 |
| Msa1016600 | AT1G27370.1 | 54.839 | 124 | 55 | 1 | 103 | 225 | 126 | 249 | 2.15e-37 | 137 |
| Msa1016600 | AT1G27370.5 | 54.839 | 124 | 55 | 1 | 103 | 225 | 126 | 249 | 2.15e-37 | 137 |
| Msa1016600 | AT1G27370.3 | 54.839 | 124 | 55 | 1 | 103 | 225 | 126 | 249 | 2.15e-37 | 137 |
| Msa1016600 | AT1G27370.2 | 54.839 | 124 | 55 | 1 | 103 | 225 | 126 | 249 | 2.15e-37 | 137 |
| Msa1016600 | AT1G27370.4 | 54.839 | 124 | 55 | 1 | 103 | 225 | 126 | 249 | 2.15e-37 | 137 |
| Msa1016600 | AT1G27370.7 | 54.839 | 124 | 55 | 1 | 103 | 225 | 126 | 249 | 2.15e-37 | 137 |
| Msa1016600 | AT1G27360.2 | 55.285 | 123 | 55 | 0 | 103 | 225 | 126 | 248 | 4.13e-37 | 137 |
| Msa1016600 | AT1G27360.1 | 55.285 | 123 | 55 | 0 | 103 | 225 | 126 | 248 | 4.13e-37 | 137 |
| Msa1016600 | AT1G27360.3 | 55.285 | 123 | 55 | 0 | 103 | 225 | 126 | 248 | 4.13e-37 | 137 |
| Msa1016600 | AT1G27360.4 | 55.285 | 123 | 55 | 0 | 103 | 225 | 126 | 248 | 4.13e-37 | 137 |
| Msa1016600 | AT2G33810.1 | 69.231 | 78 | 24 | 0 | 152 | 229 | 54 | 131 | 2.04e-35 | 125 |
| Msa1016600 | AT5G43270.3 | 53.846 | 130 | 56 | 3 | 98 | 225 | 115 | 242 | 2.41e-35 | 132 |
| Msa1016600 | AT5G43270.1 | 53.846 | 130 | 56 | 3 | 98 | 225 | 115 | 242 | 2.41e-35 | 132 |
| Msa1016600 | AT5G43270.2 | 53.846 | 130 | 56 | 3 | 98 | 225 | 115 | 242 | 2.41e-35 | 132 |
| Msa1016600 | AT3G15270.1 | 58.491 | 106 | 40 | 1 | 152 | 253 | 63 | 168 | 4.86e-35 | 125 |
| Msa1016600 | AT1G53160.3 | 70.000 | 80 | 24 | 0 | 152 | 231 | 54 | 133 | 2.25e-33 | 121 |
| Msa1016600 | AT2G42200.1 | 63.736 | 91 | 33 | 0 | 149 | 239 | 71 | 161 | 2.69e-33 | 126 |
| Msa1016600 | AT1G02065.1 | 70.513 | 78 | 23 | 0 | 148 | 225 | 184 | 261 | 2.97e-33 | 125 |
| Msa1016600 | AT1G53160.2 | 70.000 | 80 | 24 | 0 | 152 | 231 | 54 | 133 | 3.36e-33 | 120 |
| Msa1016600 | AT1G53160.1 | 70.000 | 80 | 24 | 0 | 152 | 231 | 54 | 133 | 3.36e-33 | 120 |
| Msa1016600 | AT3G60030.1 | 58.654 | 104 | 42 | 1 | 134 | 236 | 108 | 211 | 6.39e-33 | 129 |
| Msa1016600 | AT3G57920.1 | 53.279 | 122 | 41 | 2 | 104 | 225 | 27 | 132 | 7.24e-33 | 124 |
| Msa1016600 | AT1G69170.1 | 53.982 | 113 | 39 | 1 | 113 | 225 | 98 | 197 | 1.44e-32 | 125 |
| Msa1016600 | AT5G50570.1 | 57.303 | 89 | 38 | 0 | 145 | 233 | 94 | 182 | 6.13e-31 | 119 |
| Msa1016600 | AT5G50570.2 | 57.303 | 89 | 38 | 0 | 145 | 233 | 94 | 182 | 6.13e-31 | 119 |
| Msa1016600 | AT5G50670.1 | 57.303 | 89 | 38 | 0 | 145 | 233 | 94 | 182 | 6.13e-31 | 119 |
| Msa1016600 | AT5G50670.2 | 57.303 | 89 | 38 | 0 | 145 | 233 | 94 | 182 | 6.13e-31 | 119 |
| Msa1016600 | AT1G76580.3 | 66.667 | 81 | 27 | 0 | 151 | 231 | 113 | 193 | 1.05e-30 | 122 |
| Msa1016600 | AT1G76580.2 | 66.667 | 81 | 27 | 0 | 151 | 231 | 113 | 193 | 1.11e-30 | 122 |
| Msa1016600 | AT1G76580.1 | 66.667 | 81 | 27 | 0 | 151 | 231 | 113 | 193 | 1.91e-30 | 122 |
| Msa1016600 | AT1G20980.1 | 70.130 | 77 | 23 | 0 | 152 | 228 | 120 | 196 | 3.27e-30 | 121 |
| Msa1016600 | AT2G47070.1 | 69.333 | 75 | 23 | 0 | 152 | 226 | 106 | 180 | 9.46e-30 | 119 |
| Msa1016600 | AT5G18830.2 | 44.211 | 95 | 53 | 0 | 143 | 237 | 129 | 223 | 1.84e-19 | 89.4 |
| Msa1016600 | AT5G18830.1 | 44.211 | 95 | 53 | 0 | 143 | 237 | 129 | 223 | 1.92e-19 | 89.4 |
| Msa1016600 | AT5G18830.3 | 44.211 | 95 | 53 | 0 | 143 | 237 | 129 | 223 | 2.06e-19 | 89.4 |
| Msa1016600 | AT1G02065.2 | 63.934 | 61 | 20 | 1 | 148 | 206 | 184 | 244 | 7.27e-19 | 84.7 |
| Msa1016600 | AT2G47070.2 | 72.549 | 51 | 14 | 0 | 176 | 226 | 1 | 51 | 8.27e-18 | 84.7 |
Find 104 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAAGACGGCGGCGGTGG+TGG | 0.238002 | 7_1:-33568641 | Msa1016600:CDS |
| GATGTGAGTGGTGGTGGTGG+GGG | 0.246735 | 7_1:-33568709 | Msa1016600:CDS |
| ATGTGAGTGGTGGTGGTGGG+GGG | 0.286741 | 7_1:-33568708 | Msa1016600:CDS |
| GGATGTGAGTGGTGGTGGTG+GGG | 0.287064 | 7_1:-33568710 | Msa1016600:CDS |
| AAACCCAACACCACAACTTT+TGG | 0.295801 | 7_1:+33568508 | None:intergenic |
| CATATGTTGTGGGAAATAAT+TGG | 0.328845 | 7_1:+33564822 | None:intergenic |
| TGTCATCTCGGACTGATTCA+TGG | 0.336380 | 7_1:-33565002 | Msa1016600:CDS |
| AGGATGTGAGTGGTGGTGGT+GGG | 0.362480 | 7_1:-33568711 | Msa1016600:CDS |
| TGGTGGGAAGACGGCGGCGG+TGG | 0.367065 | 7_1:-33568644 | Msa1016600:CDS |
| GAGGATGTGAGTGGTGGTGG+TGG | 0.374532 | 7_1:-33568712 | Msa1016600:CDS |
| CACCTCACATGTTTGAAGTT+GGG | 0.387603 | 7_1:-33568751 | Msa1016600:CDS |
| GGCGGTGGTGGGTGGTTATA+CGG | 0.389810 | 7_1:-33568629 | Msa1016600:CDS |
| GGAGGATATTGTGGTGGTGG+TGG | 0.392988 | 7_1:-33568661 | Msa1016600:CDS |
| AAGACGGCGGCGGTGGTGGG+TGG | 0.396016 | 7_1:-33568637 | Msa1016600:CDS |
| AAAAGTTGTGGTGTTGGGTT+TGG | 0.400118 | 7_1:-33568506 | Msa1016600:CDS |
| GTGACAAGGTGTCAGGTGGA+TGG | 0.400175 | 7_1:-33568604 | Msa1016600:CDS |
| ATTCAAAGAGAAGTTGTAGA+AGG | 0.402392 | 7_1:-33565995 | Msa1016600:CDS |
| CGTCGCTTTCGTTCTGAGGC+AGG | 0.422225 | 7_1:+33568836 | None:intergenic |
| TAATGCAGCGCTGCATCTTA+CGG | 0.427164 | 7_1:+33564960 | None:intergenic |
| GGGAAGACGGCGGCGGTGGT+GGG | 0.428096 | 7_1:-33568640 | Msa1016600:CDS |
| GCACCAAAAGTTGTGGTGTT+GGG | 0.429036 | 7_1:-33568511 | Msa1016600:CDS |
| AGAAAACCGAGCATCGATAA+TGG | 0.432077 | 7_1:-33564923 | Msa1016600:CDS |
| TTTGAGGATGTGAGTGGTGG+TGG | 0.437244 | 7_1:-33568715 | Msa1016600:CDS |
| AAACATGTGAGGTGTGGATC+AGG | 0.445259 | 7_1:+33568760 | None:intergenic |
| CTTTCTCTCTTCTGTCATCT+CGG | 0.450629 | 7_1:-33565014 | Msa1016600:CDS |
| ATACGGTGGAGGTGTGTCTC+GGG | 0.452355 | 7_1:-33568794 | Msa1016600:CDS |
| ACACCTCACATGTTTGAAGT+TGG | 0.453165 | 7_1:-33568752 | Msa1016600:CDS |
| CGTTATTGTTAGTATTACTT+TGG | 0.461547 | 7_1:+33569007 | None:intergenic |
| CATACGGTGGAGGTGTGTCT+CGG | 0.463683 | 7_1:-33568795 | Msa1016600:CDS |
| CATGTTTGAAGTTGGGGAAG+AGG | 0.463800 | 7_1:-33568744 | Msa1016600:CDS |
| ATATAAACAAACATGGACTT+TGG | 0.464767 | 7_1:-33569060 | None:intergenic |
| GGGCTGGCTGGGGAGAAGAA+AGG | 0.471082 | 7_1:-33568688 | Msa1016600:CDS |
| GCCTAGCCATTATCGATGCT+CGG | 0.471586 | 7_1:+33564917 | None:intergenic |
| TGGCTAGACCTGCCTCGTTA+CGG | 0.473753 | 7_1:+33568872 | None:intergenic |
| GGAAATAATTGGACTCGGAT+TGG | 0.474080 | 7_1:+33564833 | None:intergenic |
| GATTCTGTCAACAGTGTAGC+AGG | 0.478919 | 7_1:-33568477 | Msa1016600:intron |
| GGCACCAAAAGTTGTGGTGT+TGG | 0.478965 | 7_1:-33568512 | Msa1016600:CDS |
| GGCTGGCTGGGGAGAAGAAA+GGG | 0.481722 | 7_1:-33568687 | Msa1016600:CDS |
| TACGGCGGTGACAAGGTGTC+AGG | 0.483370 | 7_1:-33568611 | Msa1016600:CDS |
| AATTCCTCCCAACAGAATCA+TGG | 0.485519 | 7_1:+33565934 | None:intergenic |
| ACCTGCCTCGTTACGGTTGG+CGG | 0.491349 | 7_1:+33568879 | None:intergenic |
| ACCTCACATGTTTGAAGTTG+GGG | 0.495007 | 7_1:-33568750 | Msa1016600:CDS |
| TGGTGGTGGGAAGACGGCGG+CGG | 0.500366 | 7_1:-33568647 | Msa1016600:CDS |
| GCCGCCAACCGTAACGAGGC+AGG | 0.504436 | 7_1:-33568880 | Msa1016600:CDS |
| TGAATGCTAAGGAGTATCAT+AGG | 0.506629 | 7_1:-33568564 | Msa1016600:CDS |
| GGAGTATCATAGGAGACATA+AGG | 0.511196 | 7_1:-33568554 | Msa1016600:CDS |
| AGTTGTAGAAGGAGACTGGC+TGG | 0.513272 | 7_1:-33565984 | Msa1016600:CDS |
| GACTGATTCATGGCTTTCAC+CGG | 0.514906 | 7_1:-33564992 | Msa1016600:CDS |
| TTGTGGTGGTGGTGGGAAGA+CGG | 0.516504 | 7_1:-33568653 | Msa1016600:CDS |
| CGTCCGTCGCTTTCGTTCTG+AGG | 0.517597 | 7_1:+33568832 | None:intergenic |
| GAGGATATTGTGGTGGTGGT+GGG | 0.521993 | 7_1:-33568660 | Msa1016600:CDS |
| CATCTTACGGAGAGGTCAGC+CGG | 0.525498 | 7_1:+33564973 | None:intergenic |
| AGAGCTCCCATGATTCTGTT+GGG | 0.525869 | 7_1:-33565941 | Msa1016600:CDS |
| GATCTCCTTGTAGTCTTCCA+CGG | 0.529276 | 7_1:+33564855 | None:intergenic |
| GAGAAGTTGTAGAAGGAGAC+TGG | 0.529685 | 7_1:-33565988 | Msa1016600:CDS |
| TGACAAGGTGTCAGGTGGAT+GGG | 0.531625 | 7_1:-33568603 | Msa1016600:CDS |
| AAGAGCTCCCATGATTCTGT+TGG | 0.535482 | 7_1:-33565942 | Msa1016600:CDS |
| TAAACAAACATGGACTTTGG+AGG | 0.536667 | 7_1:-33569057 | None:intergenic |
| CAAAGTAATACTAACAATAA+CGG | 0.540380 | 7_1:-33569006 | Msa1016600:CDS |
| GGGGAGAAGAAAGGGAAAGG+AGG | 0.540943 | 7_1:-33568679 | Msa1016600:CDS |
| AAAGGAGGATATTGTGGTGG+TGG | 0.543034 | 7_1:-33568664 | Msa1016600:CDS |
| CATCAAATTCTGACACAACA+TGG | 0.543897 | 7_1:+33566018 | None:intergenic |
| TTGTGGGAAATAATTGGACT+CGG | 0.550675 | 7_1:+33564828 | None:intergenic |
| AAAGGGAAAGGAGGATATTG+TGG | 0.551862 | 7_1:-33568670 | Msa1016600:CDS |
| TGCCTCGTTACGGTTGGCGG+CGG | 0.558232 | 7_1:+33568882 | None:intergenic |
| AACAATAACGGTAACAGTAA+CGG | 0.559154 | 7_1:-33568994 | Msa1016600:CDS |
| TAGACCTGCCTCGTTACGGT+TGG | 0.562351 | 7_1:+33568876 | None:intergenic |
| ATTCCTCCCAACAGAATCAT+GGG | 0.563033 | 7_1:+33565935 | None:intergenic |
| CGACAGTATCGGAGTGCATA+CGG | 0.565269 | 7_1:-33568811 | Msa1016600:CDS |
| AATACGTCTCAGACAGAGAC+TGG | 0.567151 | 7_1:-33564894 | Msa1016600:CDS |
| TATCGGAGTGCATACGGTGG+AGG | 0.569830 | 7_1:-33568805 | Msa1016600:CDS |
| GTGGTTATACGGCGGTGACA+AGG | 0.572879 | 7_1:-33568618 | Msa1016600:CDS |
| CCTTGTAGTCTTCCACGGCA+TGG | 0.578162 | 7_1:+33564860 | None:intergenic |
| AAACAAACATGGACTTTGGA+GGG | 0.586271 | 7_1:-33569056 | None:intergenic |
| TACGGTGGAGGTGTGTCTCG+GGG | 0.588358 | 7_1:-33568793 | Msa1016600:CDS |
| CCATGCCGTGGAAGACTACA+AGG | 0.590047 | 7_1:-33564860 | Msa1016600:CDS |
| GGTTTGTGAGATGCATTCAA+AGG | 0.590461 | 7_1:-33568533 | Msa1016600:CDS |
| CGTGGCATTGATGAATGCTA+AGG | 0.590898 | 7_1:-33568575 | Msa1016600:CDS |
| AACTTCAAACATGTGAGGTG+TGG | 0.592893 | 7_1:+33568754 | None:intergenic |
| TTCAAAGGCACCAAAAGTTG+TGG | 0.596745 | 7_1:-33568518 | Msa1016600:CDS |
| AAACACAATCTTGCCTTGTG+AGG | 0.598676 | 7_1:+33565911 | None:intergenic |
| CTCCGCCGCCAACCGTAACG+AGG | 0.600437 | 7_1:-33568884 | Msa1016600:CDS |
| AAAGCGACGGACGACAGTAT+CGG | 0.601886 | 7_1:-33568822 | Msa1016600:CDS |
| GGCGGTGACAAGGTGTCAGG+TGG | 0.614891 | 7_1:-33568608 | Msa1016600:CDS |
| TCTGCGGAAACATATGTTGT+GGG | 0.616543 | 7_1:+33564812 | None:intergenic |
| ACCGAGCATCGATAATGGCT+AGG | 0.618479 | 7_1:-33564918 | Msa1016600:CDS |
| GTTGTAGAAGGAGACTGGCT+GGG | 0.618724 | 7_1:-33565983 | Msa1016600:CDS |
| AGTAGTGGTAGTGCTACTAC+TGG | 0.619066 | 7_1:-33568958 | Msa1016600:CDS |
| GCATTTGCAGCACCATGCCG+TGG | 0.620143 | 7_1:-33564872 | Msa1016600:CDS |
| AACCATCACTAATGTGTCTG+CGG | 0.630280 | 7_1:+33564796 | None:intergenic |
| TGGTGGTGGTGGGAAGACGG+CGG | 0.632124 | 7_1:-33568650 | Msa1016600:CDS |
| GTTGGGAGGAATTCCTCACA+AGG | 0.635637 | 7_1:-33565924 | Msa1016600:intron |
| GTGCTACTACTGGTACTGCA+TGG | 0.636664 | 7_1:-33568948 | Msa1016600:CDS |
| TCCCCAACTTCAAACATGTG+AGG | 0.641757 | 7_1:+33568749 | None:intergenic |
| GCTGGGGAGAAGAAAGGGAA+AGG | 0.645912 | 7_1:-33568682 | Msa1016600:CDS |
| GGGAAAGGAGGATATTGTGG+TGG | 0.654744 | 7_1:-33568667 | Msa1016600:CDS |
| TCAGGTGGATGGGTGTAACG+TGG | 0.655827 | 7_1:-33568593 | Msa1016600:CDS |
| AGGCAGGTACATAAGCGCGT+TGG | 0.656121 | 7_1:+33568852 | None:intergenic |
| GTCTGCGGAAACATATGTTG+TGG | 0.669116 | 7_1:+33564811 | None:intergenic |
| GCTCCCATGATTCTGTTGGG+AGG | 0.673767 | 7_1:-33565938 | Msa1016600:CDS |
| CAGCGCTGCATCTTACGGAG+AGG | 0.691330 | 7_1:+33564965 | None:intergenic |
| CTGCCTCAGAACGAAAGCGA+CGG | 0.700601 | 7_1:-33568835 | Msa1016600:CDS |
| CAGTATCGGAGTGCATACGG+TGG | 0.746660 | 7_1:-33568808 | Msa1016600:CDS |
| GGTGGTGGGTGGTTATACGG+CGG | 0.751778 | 7_1:-33568626 | Msa1016600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTTTTTAATAAA+TGG | - | chr7_1:33565441-33565460 | Msa1016600:intron | 0.0% |
| !!! | TTGTAACTAATATTAAATTT+TGG | - | chr7_1:33565757-33565776 | Msa1016600:intron | 10.0% |
| !! | ATAAAGATAGATATTAAAAA+TGG | - | chr7_1:33566150-33566169 | Msa1016600:intron | 10.0% |
| !! | CTATCAATTAAAAAAAAAAA+AGG | - | chr7_1:33567366-33567385 | Msa1016600:intron | 10.0% |
| !!! | GTTTTTAATTTTATGTTTTA+GGG | - | chr7_1:33567743-33567762 | Msa1016600:intron | 10.0% |
| !! | GATAATTAATATTAAAAATG+TGG | - | chr7_1:33567787-33567806 | Msa1016600:intron | 10.0% |
| !!! | ATATTTTCTACTAGTAAATA+TGG | + | chr7_1:33565600-33565619 | None:intergenic | 15.0% |
| !! | ATAATATTTACTGCTAAATA+TGG | + | chr7_1:33565655-33565674 | None:intergenic | 15.0% |
| !! | ATAGTAAGTTATAAATTACT+AGG | + | chr7_1:33565733-33565752 | None:intergenic | 15.0% |
| !! | TCTATTGATAAAATAATATG+AGG | + | chr7_1:33566100-33566119 | None:intergenic | 15.0% |
| !! | AGAAAAATTTAAATAGAACT+CGG | - | chr7_1:33566117-33566136 | Msa1016600:intron | 15.0% |
| !! | AGATATTAAAAATGGATATT+AGG | - | chr7_1:33566158-33566177 | Msa1016600:intron | 15.0% |
| !! | GATATTAAAAATGGATATTA+GGG | - | chr7_1:33566159-33566178 | Msa1016600:intron | 15.0% |
| !! | ATATTAAAAATGGATATTAG+GGG | - | chr7_1:33566160-33566179 | Msa1016600:intron | 15.0% |
| !!! | TATTTTACATGTAAAAAAGT+AGG | + | chr7_1:33566254-33566273 | None:intergenic | 15.0% |
| !!! | TACTTTTTTACATGTAAAAT+AGG | - | chr7_1:33566253-33566272 | Msa1016600:intron | 15.0% |
| !! | ATAAAAAAGTTGTTAGAAAA+TGG | + | chr7_1:33566389-33566408 | None:intergenic | 15.0% |
| !!! | TAACATTTTTTATACTTTTG+AGG | - | chr7_1:33567210-33567229 | Msa1016600:intron | 15.0% |
| !! | TGTTGGTATTATTATTATAA+GGG | + | chr7_1:33567316-33567335 | None:intergenic | 15.0% |
| !! | TTGTTGGTATTATTATTATA+AGG | + | chr7_1:33567317-33567336 | None:intergenic | 15.0% |
| !! | AAAAATATGTAACTATTACT+AGG | - | chr7_1:33567537-33567556 | Msa1016600:intron | 15.0% |
| !!! | AAAAGAGTATCTTATATTTA+TGG | - | chr7_1:33567642-33567661 | Msa1016600:intron | 15.0% |
| !! | AATAAAAAATAATACTCCTT+CGG | + | chr7_1:33567705-33567724 | None:intergenic | 15.0% |
| !!! | GGTTTTTAATTTTATGTTTT+AGG | - | chr7_1:33567742-33567761 | Msa1016600:intron | 15.0% |
| !! | TTCAAAAAAAGTAAATTTCA+TGG | + | chr7_1:33568027-33568046 | None:intergenic | 15.0% |
| !!! | TTATTTATTTTCAATGCATT+AGG | + | chr7_1:33568146-33568165 | None:intergenic | 15.0% |
| !!! | TTATTTATTTTCAATGCATT+AGG | + | chr7_1:33568146-33568165 | None:intergenic | 15.0% |
| !! | TTAAAGATATCTGATTTATA+AGG | - | chr7_1:33568607-33568626 | Msa1016600:CDS | 15.0% |
| !! | CAAAGTAATACTAACAATAA+CGG | - | chr7_1:33564846-33564865 | Msa1016600:CDS | 20.0% |
| !!! | GAATACTTTTAATGTTAATG+AGG | - | chr7_1:33564932-33564951 | Msa1016600:CDS | 20.0% |
| !!! | TACAATAGTTTGTTAAAGAT+AGG | + | chr7_1:33566343-33566362 | None:intergenic | 20.0% |
| !!! | CCAAATTTTATTTTACAATG+AGG | + | chr7_1:33566546-33566565 | None:intergenic | 20.0% |
| !! | CCTCATTGTAAAATAAAATT+TGG | - | chr7_1:33566543-33566562 | Msa1016600:intron | 20.0% |
| !!! | CTCAGTTTTTTTTTTTTGAA+TGG | - | chr7_1:33566590-33566609 | Msa1016600:intron | 20.0% |
| !! | ATTAATATACATGCAGATAT+TGG | + | chr7_1:33566938-33566957 | None:intergenic | 20.0% |
| !!! | GATATATTTTGTAGTTGTAT+AGG | + | chr7_1:33567033-33567052 | None:intergenic | 20.0% |
| !!! | AAAAAAGGTATTGATTTTAG+AGG | - | chr7_1:33567381-33567400 | Msa1016600:intron | 20.0% |
| !! | GTAAATTACTCTTATACTAA+GGG | + | chr7_1:33567468-33567487 | None:intergenic | 20.0% |
| !! | TGTAAATTACTCTTATACTA+AGG | + | chr7_1:33567469-33567488 | None:intergenic | 20.0% |
| !! | GAGTAATTTACAAAAAATCA+CGG | - | chr7_1:33567477-33567496 | Msa1016600:intron | 20.0% |
| !! | TGATTGCATTTATACATAAA+GGG | + | chr7_1:33567566-33567585 | None:intergenic | 20.0% |
| !! | TTGATTGCATTTATACATAA+AGG | + | chr7_1:33567567-33567586 | None:intergenic | 20.0% |
| !!! | ACAATTGATAGTATTAGTAA+GGG | - | chr7_1:33567608-33567627 | Msa1016600:intron | 20.0% |
| !! | TAATATTAAAAATGTGGTTG+TGG | - | chr7_1:33567793-33567812 | Msa1016600:intron | 20.0% |
| !! | AATATTAAAAATGTGGTTGT+GGG | - | chr7_1:33567794-33567813 | Msa1016600:intron | 20.0% |
| !! | TAAACAAAATGGAAAATCTT+GGG | + | chr7_1:33568681-33568700 | None:intergenic | 20.0% |
| !! | ATAAACAAAATGGAAAATCT+TGG | + | chr7_1:33568682-33568701 | None:intergenic | 20.0% |
| !! | TACTAAGTAGATAAACAAAA+TGG | + | chr7_1:33568692-33568711 | None:intergenic | 20.0% |
| ! | CGTTATTGTTAGTATTACTT+TGG | + | chr7_1:33564848-33564867 | None:intergenic | 25.0% |
| !! | CAGATACAACAATCATTTTA+AGG | + | chr7_1:33565817-33565836 | None:intergenic | 25.0% |
| ! | TTAAACCCAACAAATGTATT+TGG | - | chr7_1:33565929-33565948 | Msa1016600:CDS | 25.0% |
| ! | GGATATTCAAATATAAACTG+CGG | - | chr7_1:33565989-33566008 | Msa1016600:CDS | 25.0% |
| ! | CACATTGCAAAATATATGTA+AGG | - | chr7_1:33566205-33566224 | Msa1016600:intron | 25.0% |
| ! | TGCAAAATATATGTAAGGAT+CGG | - | chr7_1:33566210-33566229 | Msa1016600:intron | 25.0% |
| ! | TGTAAAAAAGTAGGATATCT+CGG | + | chr7_1:33566245-33566264 | None:intergenic | 25.0% |
| !!! | AGTTTGTTAAAGATAGGTTA+AGG | + | chr7_1:33566337-33566356 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCTCATTTGAT+TGG | + | chr7_1:33566480-33566499 | None:intergenic | 25.0% |
| ! | TTGGATCTATTTGAATTTAG+AGG | + | chr7_1:33566634-33566653 | None:intergenic | 25.0% |
| !! | AATTGTTGTTAACAGTTAGT+TGG | + | chr7_1:33566653-33566672 | None:intergenic | 25.0% |
| !! | TTAGGTTTTTGAATTCTCTT+GGG | + | chr7_1:33566720-33566739 | None:intergenic | 25.0% |
| !!! | TTTAGGTTTTTGAATTCTCT+TGG | + | chr7_1:33566721-33566740 | None:intergenic | 25.0% |
| ! | TAAATATTCACCTTCCATAT+CGG | - | chr7_1:33566737-33566756 | Msa1016600:intron | 25.0% |
| ! | ATAAAAAAACGAGTGTTTGT+GGG | + | chr7_1:33566822-33566841 | None:intergenic | 25.0% |
| ! | TATAAAAAAACGAGTGTTTG+TGG | + | chr7_1:33566823-33566842 | None:intergenic | 25.0% |
| ! | ATCTGCATGTATATTAATAG+TGG | - | chr7_1:33566940-33566959 | Msa1016600:intron | 25.0% |
| ! | AAATGTAGAAAGTAGTACAT+TGG | + | chr7_1:33567253-33567272 | None:intergenic | 25.0% |
| ! | ATTATAAGGGAAATGTTAAC+CGG | + | chr7_1:33567303-33567322 | None:intergenic | 25.0% |
| ! | ACTAATACTATCAATTGTCT+TGG | + | chr7_1:33567606-33567625 | None:intergenic | 25.0% |
| !! | GACAATTGATAGTATTAGTA+AGG | - | chr7_1:33567607-33567626 | Msa1016600:intron | 25.0% |
| !! | CAATTGATAGTATTAGTAAG+GGG | - | chr7_1:33567609-33567628 | Msa1016600:intron | 25.0% |
| !!! | GACAAACATTTTTTTGCAAA+TGG | - | chr7_1:33567664-33567683 | Msa1016600:intron | 25.0% |
| !!! | TGCAAATGGTCTTATAATTA+AGG | - | chr7_1:33567678-33567697 | Msa1016600:intron | 25.0% |
| ! | ATATTAAAAATGTGGTTGTG+GGG | - | chr7_1:33567795-33567814 | Msa1016600:intron | 25.0% |
| ! | TACAATTGCATTGAATATCA+TGG | + | chr7_1:33568060-33568079 | None:intergenic | 25.0% |
| !!! | ATAAGAGTACACGATTTTTT+TGG | - | chr7_1:33568162-33568181 | Msa1016600:intron | 25.0% |
| !!! | ATAAGAGTACACGATTTTTT+TGG | - | chr7_1:33568162-33568181 | Msa1016600:intron | 25.0% |
| !!! | GTGTCTTAGATTTGTTATTT+TGG | + | chr7_1:33568450-33568469 | None:intergenic | 25.0% |
| ! | ACTAAAGATAAACAAATTCG+CGG | - | chr7_1:33568491-33568510 | Msa1016600:CDS | 25.0% |
| ! | TCTTTAAATGCAATATGTTG+TGG | + | chr7_1:33568594-33568613 | None:intergenic | 25.0% |
| !! | AGACATGTAATTTTCTTCAT+AGG | - | chr7_1:33568761-33568780 | Msa1016600:CDS | 25.0% |
| !!! | GTTTTTTGTTTCTTGTAATC+AGG | - | chr7_1:33568807-33568826 | Msa1016600:CDS | 25.0% |
| AACAATAACGGTAACAGTAA+CGG | - | chr7_1:33564858-33564877 | Msa1016600:CDS | 30.0% | |
| ! | TTTAATAAATGGAGTGTCTG+AGG | - | chr7_1:33565452-33565471 | Msa1016600:intron | 30.0% |
| TTTGATCTATGCTTGATTGT+TGG | - | chr7_1:33565855-33565874 | Msa1016600:intron | 30.0% | |
| TTGATCTATGCTTGATTGTT+GGG | - | chr7_1:33565856-33565875 | Msa1016600:intron | 30.0% | |
| ! | ACATTTGTTGGGTTTAAAGA+GGG | + | chr7_1:33565926-33565945 | None:intergenic | 30.0% |
| ! | TACATTTGTTGGGTTTAAAG+AGG | + | chr7_1:33565927-33565946 | None:intergenic | 30.0% |
| CAACACCAAATACATTTGTT+GGG | + | chr7_1:33565937-33565956 | None:intergenic | 30.0% | |
| GCAAAATATATGTAAGGATC+GGG | - | chr7_1:33566211-33566230 | Msa1016600:intron | 30.0% | |
| CAAAATATATGTAAGGATCG+GGG | - | chr7_1:33566212-33566231 | Msa1016600:intron | 30.0% | |
| GTAAAAAAGTAGGATATCTC+GGG | + | chr7_1:33566244-33566263 | None:intergenic | 30.0% | |
| TTGTTAAAGATAGGTTAAGG+AGG | + | chr7_1:33566334-33566353 | None:intergenic | 30.0% | |
| GATATGGAAGGTGAATATTT+AGG | + | chr7_1:33566738-33566757 | None:intergenic | 30.0% | |
| ! | TTGTTTGAGCTTGTTCTTTA+TGG | + | chr7_1:33566769-33566788 | None:intergenic | 30.0% |
| !!! | CTTGACTTTTTTTCCAATAG+CGG | + | chr7_1:33566798-33566817 | None:intergenic | 30.0% |
| CTTTCACTATTCTTACAGAT+CGG | + | chr7_1:33566849-33566868 | None:intergenic | 30.0% | |
| CATTCACTAAGATTAAGATC+CGG | + | chr7_1:33566987-33567006 | None:intergenic | 30.0% | |
| ! | TAGTTGTATAGGCTTCTTTT+TGG | + | chr7_1:33567022-33567041 | None:intergenic | 30.0% |
| ACTGGTTAAGGAACTTAAAA+AGG | - | chr7_1:33567170-33567189 | Msa1016600:intron | 30.0% | |
| CAACTAAAGAGTTCATTTGT+TGG | + | chr7_1:33567333-33567352 | None:intergenic | 30.0% | |
| CAACAAATGAACTCTTTAGT+TGG | - | chr7_1:33567331-33567350 | Msa1016600:intron | 30.0% | |
| ! | TCAAAGGTGTAAAAGTTATG+TGG | - | chr7_1:33567410-33567429 | Msa1016600:intron | 30.0% |
| ! | CAAAGGTGTAAAAGTTATGT+GGG | - | chr7_1:33567411-33567430 | Msa1016600:intron | 30.0% |
| ATTACTCTTATACTAAGGGA+CGG | + | chr7_1:33567464-33567483 | None:intergenic | 30.0% | |
| ! | GTATTAGTAAGGGGTATAAT+TGG | - | chr7_1:33567618-33567637 | Msa1016600:intron | 30.0% |
| TATTTGCACACAATGTTGTA+TGG | - | chr7_1:33567721-33567740 | Msa1016600:intron | 30.0% | |
| ATTCAAAGAGAAGTTGTAGA+AGG | - | chr7_1:33567857-33567876 | Msa1016600:intron | 30.0% | |
| ATCTTCAGTTTGTAACTTGA+TGG | - | chr7_1:33568423-33568442 | Msa1016600:intron | 30.0% | |
| ACCAACGAAAAACATATTCA+AGG | - | chr7_1:33568522-33568541 | Msa1016600:CDS | 30.0% | |
| TGTTGTGGAAATTTCATTCT+AGG | + | chr7_1:33568579-33568598 | None:intergenic | 30.0% | |
| !! | TTTTGTTTCTTGTAATCAGG+TGG | - | chr7_1:33568810-33568829 | Msa1016600:CDS | 30.0% |
| ! | TTTGTTTCTTGTAATCAGGT+GGG | - | chr7_1:33568811-33568830 | Msa1016600:CDS | 30.0% |
| CATATGTTGTGGGAAATAAT+TGG | + | chr7_1:33569033-33569052 | None:intergenic | 30.0% | |
| ! | GTAACAGTAACGGTTTTACT+TGG | - | chr7_1:33564868-33564887 | Msa1016600:CDS | 35.0% |
| !! | TGAATGCTAAGGAGTATCAT+AGG | - | chr7_1:33565288-33565307 | Msa1016600:intron | 35.0% |
| !!! | TATGATTGTCGTTTTGCTCA+CGG | - | chr7_1:33565495-33565514 | Msa1016600:intron | 35.0% |
| TGATCTATGCTTGATTGTTG+GGG | - | chr7_1:33565857-33565876 | Msa1016600:intron | 35.0% | |
| CCAACACCAAATACATTTGT+TGG | + | chr7_1:33565938-33565957 | None:intergenic | 35.0% | |
| !! | CCAACAAATGTATTTGGTGT+TGG | - | chr7_1:33565935-33565954 | Msa1016600:CDS | 35.0% |
| !! | CAAATGTATTTGGTGTTGGT+TGG | - | chr7_1:33565939-33565958 | Msa1016600:CDS | 35.0% |
| !! | GGTGTTGGTTGGAATAATAA+TGG | - | chr7_1:33565950-33565969 | Msa1016600:CDS | 35.0% |
| AATGGTTTAGACGACAAAAG+TGG | - | chr7_1:33565968-33565987 | Msa1016600:CDS | 35.0% | |
| GCACAGGATAAATAGTCTAA+TGG | + | chr7_1:33566289-33566308 | None:intergenic | 35.0% | |
| GTGATATTTGTACGACTCTT+TGG | + | chr7_1:33566522-33566541 | None:intergenic | 35.0% | |
| ! | GTTTTTGAATTCTCTTGGGA+GGG | + | chr7_1:33566716-33566735 | None:intergenic | 35.0% |
| CTTTATGGTCTAATCCGATA+TGG | + | chr7_1:33566754-33566773 | None:intergenic | 35.0% | |
| CGGATATTAAGAATAGTTGC+TGG | - | chr7_1:33567497-33567516 | Msa1016600:intron | 35.0% | |
| GTCTTATAATTAAGGACCGA+AGG | - | chr7_1:33567686-33567705 | Msa1016600:intron | 35.0% | |
| CATCAAATTCTGACACAACA+TGG | + | chr7_1:33567837-33567856 | None:intergenic | 35.0% | |
| ! | ATGTAAATTTGAGACGTTCG+AGG | + | chr7_1:33568220-33568239 | None:intergenic | 35.0% |
| ! | ATGTAAATTTGAGACGTTCG+AGG | + | chr7_1:33568220-33568239 | None:intergenic | 35.0% |
| ! | GCCTTGAATATGTTTTTCGT+TGG | + | chr7_1:33568526-33568545 | None:intergenic | 35.0% |
| CATAGGAGACAATATGTTGA+TGG | - | chr7_1:33568778-33568797 | Msa1016600:CDS | 35.0% | |
| TTGTGGGAAATAATTGGACT+CGG | + | chr7_1:33569027-33569046 | None:intergenic | 35.0% | |
| !!! | GGTTTTACTTGGTGTAGTAG+TGG | - | chr7_1:33564879-33564898 | Msa1016600:CDS | 40.0% |
| AACTTCAAACATGTGAGGTG+TGG | + | chr7_1:33565101-33565120 | None:intergenic | 40.0% | |
| ! | ACACCTCACATGTTTGAAGT+TGG | - | chr7_1:33565100-33565119 | Msa1016600:intron | 40.0% |
| ! | CACCTCACATGTTTGAAGTT+GGG | - | chr7_1:33565101-33565120 | Msa1016600:intron | 40.0% |
| ! | ACCTCACATGTTTGAAGTTG+GGG | - | chr7_1:33565102-33565121 | Msa1016600:intron | 40.0% |
| !! | CACTATTTTGAGGATGTGAG+TGG | - | chr7_1:33565131-33565150 | Msa1016600:intron | 40.0% |
| !! | TATTTTGAGGATGTGAGTGG+TGG | - | chr7_1:33565134-33565153 | Msa1016600:intron | 40.0% |
| AAAGGGAAAGGAGGATATTG+TGG | - | chr7_1:33565182-33565201 | Msa1016600:intron | 40.0% | |
| ! | GGAGTATCATAGGAGACATA+AGG | - | chr7_1:33565298-33565317 | Msa1016600:intron | 40.0% |
| GGTTTGTGAGATGCATTCAA+AGG | - | chr7_1:33565319-33565338 | Msa1016600:intron | 40.0% | |
| !! | TTCAAAGGCACCAAAAGTTG+TGG | - | chr7_1:33565334-33565353 | Msa1016600:intron | 40.0% |
| ! | AAACCCAACACCACAACTTT+TGG | + | chr7_1:33565347-33565366 | None:intergenic | 40.0% |
| ! | AAAAGTTGTGGTGTTGGGTT+TGG | - | chr7_1:33565346-33565365 | Msa1016600:intron | 40.0% |
| !!! | ATGATTGTCGTTTTGCTCAC+GGG | - | chr7_1:33565496-33565515 | Msa1016600:intron | 40.0% |
| TTGAGTTCGAACATGTGTGT+TGG | - | chr7_1:33565881-33565900 | Msa1016600:intron | 40.0% | |
| ! | GGTTTTTGAATTCTCTTGGG+AGG | + | chr7_1:33566717-33566736 | None:intergenic | 40.0% |
| ATGGTCTAATCCGATATGGA+AGG | + | chr7_1:33566750-33566769 | None:intergenic | 40.0% | |
| CAAACAAACACAACCGCTAT+TGG | - | chr7_1:33566782-33566801 | Msa1016600:intron | 40.0% | |
| CCAAGATGATTCACACAATC+CGG | - | chr7_1:33566965-33566984 | Msa1016600:intron | 40.0% | |
| !!! | AGGTATTGATTTTAGAGGCC+TGG | - | chr7_1:33567386-33567405 | Msa1016600:intron | 40.0% |
| !!! | GGTATTGATTTTAGAGGCCT+GGG | - | chr7_1:33567387-33567406 | Msa1016600:intron | 40.0% |
| ! | AACTTTTACACCTTTGACCC+AGG | + | chr7_1:33567407-33567426 | None:intergenic | 40.0% |
| ATTCCTCCCAACAGAATCAT+GGG | + | chr7_1:33567920-33567939 | None:intergenic | 40.0% | |
| AATTCCTCCCAACAGAATCA+TGG | + | chr7_1:33567921-33567940 | None:intergenic | 40.0% | |
| AAACACAATCTTGCCTTGTG+AGG | + | chr7_1:33567944-33567963 | None:intergenic | 40.0% | |
| !! | GGAGACAATATGTTGATGGT+TGG | - | chr7_1:33568782-33568801 | Msa1016600:CDS | 40.0% |
| !! | GACAATATGTTGATGGTTGG+TGG | - | chr7_1:33568785-33568804 | Msa1016600:CDS | 40.0% |
| CTTTCTCTCTTCTGTCATCT+CGG | - | chr7_1:33568838-33568857 | Msa1016600:CDS | 40.0% | |
| !! | AGAAAACCGAGCATCGATAA+TGG | - | chr7_1:33568929-33568948 | Msa1016600:CDS | 40.0% |
| GGAAATAATTGGACTCGGAT+TGG | + | chr7_1:33569022-33569041 | None:intergenic | 40.0% | |
| TCTGCGGAAACATATGTTGT+GGG | + | chr7_1:33569043-33569062 | None:intergenic | 40.0% | |
| ! | AGTAGTGGTAGTGCTACTAC+TGG | - | chr7_1:33564894-33564913 | Msa1016600:CDS | 45.0% |
| AAACATGTGAGGTGTGGATC+AGG | + | chr7_1:33565095-33565114 | None:intergenic | 45.0% | |
| TCCCCAACTTCAAACATGTG+AGG | + | chr7_1:33565106-33565125 | None:intergenic | 45.0% | |
| ! | CATGTTTGAAGTTGGGGAAG+AGG | - | chr7_1:33565108-33565127 | Msa1016600:intron | 45.0% |
| AAAGGAGGATATTGTGGTGG+TGG | - | chr7_1:33565188-33565207 | Msa1016600:intron | 45.0% | |
| !! | CGTGGCATTGATGAATGCTA+AGG | - | chr7_1:33565277-33565296 | Msa1016600:intron | 45.0% |
| GCACCAAAAGTTGTGGTGTT+GGG | - | chr7_1:33565341-33565360 | Msa1016600:intron | 45.0% | |
| GATTCTGTCAACAGTGTAGC+AGG | - | chr7_1:33565375-33565394 | Msa1016600:intron | 45.0% | |
| AGTTCGAACATGTGTGTTGG+AGG | - | chr7_1:33565884-33565903 | Msa1016600:intron | 45.0% | |
| GTTCGAACATGTGTGTTGGA+GGG | - | chr7_1:33565885-33565904 | Msa1016600:intron | 45.0% | |
| GTTTCTGTGAGCTTAACGAC+AGG | - | chr7_1:33566182-33566201 | Msa1016600:intron | 45.0% | |
| TTATCCTGTGCTGTGTGACT+AGG | - | chr7_1:33566298-33566317 | Msa1016600:intron | 45.0% | |
| TATCCTGTGCTGTGTGACTA+GGG | - | chr7_1:33566299-33566318 | Msa1016600:intron | 45.0% | |
| CCGGATTGTGTGAATCATCT+TGG | + | chr7_1:33566968-33566987 | None:intergenic | 45.0% | |
| !! | ATTTTAGAGGCCTGGGTCAA+AGG | - | chr7_1:33567394-33567413 | Msa1016600:intron | 45.0% |
| CTCTTATACTAAGGGACGGA+GGG | + | chr7_1:33567460-33567479 | None:intergenic | 45.0% | |
| ACTCTTATACTAAGGGACGG+AGG | + | chr7_1:33567461-33567480 | None:intergenic | 45.0% | |
| AAAAATGTGGTTGTGGGGAC+TGG | - | chr7_1:33567800-33567819 | Msa1016600:intron | 45.0% | |
| GAGAAGTTGTAGAAGGAGAC+TGG | - | chr7_1:33567864-33567883 | Msa1016600:intron | 45.0% | |
| AAGAGCTCCCATGATTCTGT+TGG | - | chr7_1:33567910-33567929 | Msa1016600:intron | 45.0% | |
| AGAGCTCCCATGATTCTGTT+GGG | - | chr7_1:33567911-33567930 | Msa1016600:intron | 45.0% | |
| ! | TGTCATCTCGGACTGATTCA+TGG | - | chr7_1:33568850-33568869 | Msa1016600:CDS | 45.0% |
| ! | GACTGATTCATGGCTTTCAC+CGG | - | chr7_1:33568860-33568879 | Msa1016600:CDS | 45.0% |
| TAATGCAGCGCTGCATCTTA+CGG | + | chr7_1:33568895-33568914 | None:intergenic | 45.0% | |
| AATACGTCTCAGACAGAGAC+TGG | - | chr7_1:33568958-33568977 | Msa1016600:CDS | 45.0% | |
| GATCTCCTTGTAGTCTTCCA+CGG | + | chr7_1:33569000-33569019 | None:intergenic | 45.0% | |
| GTCTGCGGAAACATATGTTG+TGG | + | chr7_1:33569044-33569063 | None:intergenic | 45.0% | |
| !! | TAAAAAATGAATTTATAATA+AGG | - | chr7_1:33567121-33567140 | Msa1016600:intron | 5.0% |
| !! | AAAAAATGAATTTATAATAA+GGG | - | chr7_1:33567122-33567141 | Msa1016600:intron | 5.0% |
| ! | GTGCTACTACTGGTACTGCA+TGG | - | chr7_1:33564904-33564923 | Msa1016600:CDS | 50.0% |
| AAAGCGACGGACGACAGTAT+CGG | - | chr7_1:33565030-33565049 | Msa1016600:intron | 50.0% | |
| ! | CGACAGTATCGGAGTGCATA+CGG | - | chr7_1:33565041-33565060 | Msa1016600:intron | 50.0% |
| !!! | GGGGAAGAGGCACTATTTTG+AGG | - | chr7_1:33565121-33565140 | Msa1016600:intron | 50.0% |
| TTTGAGGATGTGAGTGGTGG+TGG | - | chr7_1:33565137-33565156 | Msa1016600:intron | 50.0% | |
| GGGAAAGGAGGATATTGTGG+TGG | - | chr7_1:33565185-33565204 | Msa1016600:intron | 50.0% | |
| !! | GAGGATATTGTGGTGGTGGT+GGG | - | chr7_1:33565192-33565211 | Msa1016600:intron | 50.0% |
| ! | TGACAAGGTGTCAGGTGGAT+GGG | - | chr7_1:33565249-33565268 | Msa1016600:intron | 50.0% |
| GGCACCAAAAGTTGTGGTGT+TGG | - | chr7_1:33565340-33565359 | Msa1016600:intron | 50.0% | |
| AAGTTCCTTAACCAGTGCCC+CGG | + | chr7_1:33567166-33567185 | None:intergenic | 50.0% | |
| AGTTGTAGAAGGAGACTGGC+TGG | - | chr7_1:33567868-33567887 | Msa1016600:intron | 50.0% | |
| ! | GTTGTAGAAGGAGACTGGCT+GGG | - | chr7_1:33567869-33567888 | Msa1016600:intron | 50.0% |
| GTTGGGAGGAATTCCTCACA+AGG | - | chr7_1:33567928-33567947 | Msa1016600:intron | 50.0% | |
| !! | ACCGAGCATCGATAATGGCT+AGG | - | chr7_1:33568934-33568953 | Msa1016600:CDS | 50.0% |
| GCCTAGCCATTATCGATGCT+CGG | + | chr7_1:33568938-33568957 | None:intergenic | 50.0% | |
| TAGACCTGCCTCGTTACGGT+TGG | + | chr7_1:33564979-33564998 | None:intergenic | 55.0% | |
| TGGCTAGACCTGCCTCGTTA+CGG | + | chr7_1:33564983-33565002 | None:intergenic | 55.0% | |
| AGGCAGGTACATAAGCGCGT+TGG | + | chr7_1:33565003-33565022 | None:intergenic | 55.0% | |
| CTGCCTCAGAACGAAAGCGA+CGG | - | chr7_1:33565017-33565036 | Msa1016600:CDS | 55.0% | |
| ! | CAGTATCGGAGTGCATACGG+TGG | - | chr7_1:33565044-33565063 | Msa1016600:intron | 55.0% |
| TATCGGAGTGCATACGGTGG+AGG | - | chr7_1:33565047-33565066 | Msa1016600:intron | 55.0% | |
| ! | CATACGGTGGAGGTGTGTCT+CGG | - | chr7_1:33565057-33565076 | Msa1016600:intron | 55.0% |
| ! | ATACGGTGGAGGTGTGTCTC+GGG | - | chr7_1:33565058-33565077 | Msa1016600:intron | 55.0% |
| !! | AGGATGTGAGTGGTGGTGGT+GGG | - | chr7_1:33565141-33565160 | Msa1016600:intron | 55.0% |
| GCTGGGGAGAAGAAAGGGAA+AGG | - | chr7_1:33565170-33565189 | Msa1016600:intron | 55.0% | |
| GGGGAGAAGAAAGGGAAAGG+AGG | - | chr7_1:33565173-33565192 | Msa1016600:intron | 55.0% | |
| !! | GGAGGATATTGTGGTGGTGG+TGG | - | chr7_1:33565191-33565210 | Msa1016600:intron | 55.0% |
| !! | TTGTGGTGGTGGTGGGAAGA+CGG | - | chr7_1:33565199-33565218 | Msa1016600:intron | 55.0% |
| GTGGTTATACGGCGGTGACA+AGG | - | chr7_1:33565234-33565253 | Msa1016600:intron | 55.0% | |
| ! | GTGACAAGGTGTCAGGTGGA+TGG | - | chr7_1:33565248-33565267 | Msa1016600:intron | 55.0% |
| TCAGGTGGATGGGTGTAACG+TGG | - | chr7_1:33565259-33565278 | Msa1016600:intron | 55.0% | |
| ACTCCCTAGTCACACAGCAC+AGG | + | chr7_1:33566305-33566324 | None:intergenic | 55.0% | |
| GTCATGTTAACCAGTGCCCC+CGG | - | chr7_1:33567144-33567163 | Msa1016600:intron | 55.0% | |
| TCATGTTAACCAGTGCCCCC+GGG | - | chr7_1:33567145-33567164 | Msa1016600:intron | 55.0% | |
| AGTTCCTTAACCAGTGCCCC+GGG | + | chr7_1:33567165-33567184 | None:intergenic | 55.0% | |
| AGTTCCCTTAACCAGTGCCC+CGG | - | chr7_1:33567273-33567292 | Msa1016600:intron | 55.0% | |
| AAATGTTAACCGGTGCCCCG+GGG | + | chr7_1:33567293-33567312 | None:intergenic | 55.0% | |
| GAAATGTTAACCGGTGCCCC+GGG | + | chr7_1:33567294-33567313 | None:intergenic | 55.0% | |
| GGAAATGTTAACCGGTGCCC+CGG | + | chr7_1:33567295-33567314 | None:intergenic | 55.0% | |
| !! | GTTGTGGGGACTGGTTCTTC+AGG | - | chr7_1:33567809-33567828 | Msa1016600:intron | 55.0% |
| GCTCCCATGATTCTGTTGGG+AGG | - | chr7_1:33567914-33567933 | Msa1016600:intron | 55.0% | |
| CATCTTACGGAGAGGTCAGC+CGG | + | chr7_1:33568882-33568901 | None:intergenic | 55.0% | |
| CCTTGTAGTCTTCCACGGCA+TGG | + | chr7_1:33568995-33569014 | None:intergenic | 55.0% | |
| CCATGCCGTGGAAGACTACA+AGG | - | chr7_1:33568992-33569011 | Msa1016600:CDS | 55.0% | |
| ACCTGCCTCGTTACGGTTGG+CGG | + | chr7_1:33564976-33564995 | None:intergenic | 60.0% | |
| !! | CGTCGCTTTCGTTCTGAGGC+AGG | + | chr7_1:33565019-33565038 | None:intergenic | 60.0% |
| ! | CGTCCGTCGCTTTCGTTCTG+AGG | + | chr7_1:33565023-33565042 | None:intergenic | 60.0% |
| ! | TACGGTGGAGGTGTGTCTCG+GGG | - | chr7_1:33565059-33565078 | Msa1016600:intron | 60.0% |
| !! | GAGGATGTGAGTGGTGGTGG+TGG | - | chr7_1:33565140-33565159 | Msa1016600:intron | 60.0% |
| !! | GGATGTGAGTGGTGGTGGTG+GGG | - | chr7_1:33565142-33565161 | Msa1016600:intron | 60.0% |
| !! | GATGTGAGTGGTGGTGGTGG+GGG | - | chr7_1:33565143-33565162 | Msa1016600:intron | 60.0% |
| !! | ATGTGAGTGGTGGTGGTGGG+GGG | - | chr7_1:33565144-33565163 | Msa1016600:intron | 60.0% |
| ! | GGCTGGCTGGGGAGAAGAAA+GGG | - | chr7_1:33565165-33565184 | Msa1016600:intron | 60.0% |
| !! | GGCGGTGGTGGGTGGTTATA+CGG | - | chr7_1:33565223-33565242 | Msa1016600:intron | 60.0% |
| !! | GGTGGTGGGTGGTTATACGG+CGG | - | chr7_1:33565226-33565245 | Msa1016600:intron | 60.0% |
| ! | TACGGCGGTGACAAGGTGTC+AGG | - | chr7_1:33565241-33565260 | Msa1016600:intron | 60.0% |
| CATGTTAACCAGTGCCCCCG+GGG | - | chr7_1:33567146-33567165 | Msa1016600:intron | 60.0% | |
| TTCCTTAACCAGTGCCCCGG+GGG | + | chr7_1:33567163-33567182 | None:intergenic | 60.0% | |
| GTTCCTTAACCAGTGCCCCG+GGG | + | chr7_1:33567164-33567183 | None:intergenic | 60.0% | |
| GTTCCCTTAACCAGTGCCCC+GGG | - | chr7_1:33567274-33567293 | Msa1016600:intron | 60.0% | |
| TTCCCTTAACCAGTGCCCCG+GGG | - | chr7_1:33567275-33567294 | Msa1016600:intron | 60.0% | |
| CAGCGCTGCATCTTACGGAG+AGG | + | chr7_1:33568890-33568909 | None:intergenic | 60.0% | |
| GCATTTGCAGCACCATGCCG+TGG | - | chr7_1:33568980-33568999 | Msa1016600:CDS | 60.0% | |
| TGCCTCGTTACGGTTGGCGG+CGG | + | chr7_1:33564973-33564992 | None:intergenic | 65.0% | |
| !! | GGGCTGGCTGGGGAGAAGAA+AGG | - | chr7_1:33565164-33565183 | Msa1016600:intron | 65.0% |
| !! | TGGTGGTGGTGGGAAGACGG+CGG | - | chr7_1:33565202-33565221 | Msa1016600:intron | 65.0% |
| ! | GGCGGTGACAAGGTGTCAGG+TGG | - | chr7_1:33565244-33565263 | Msa1016600:intron | 65.0% |
| !! | TGCCCCGGGGCACTGGTTAA+GGG | + | chr7_1:33567280-33567299 | None:intergenic | 65.0% |
| CTCCGCCGCCAACCGTAACG+AGG | - | chr7_1:33564968-33564987 | Msa1016600:CDS | 70.0% | |
| GCCGCCAACCGTAACGAGGC+AGG | - | chr7_1:33564972-33564991 | Msa1016600:CDS | 70.0% | |
| !! | TGGTGGTGGGAAGACGGCGG+CGG | - | chr7_1:33565205-33565224 | Msa1016600:intron | 70.0% |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | - | chr7_1:33567158-33567177 | Msa1016600:intron | 70.0% |
| !! | GTGCCCCGGGGCACTGGTTA+AGG | + | chr7_1:33567281-33567300 | None:intergenic | 70.0% |
| TAACCAGTGCCCCGGGGCAC+CGG | - | chr7_1:33567281-33567300 | Msa1016600:intron | 70.0% | |
| !! | GAGTGGTGGTGGTGGGGGGC+TGG | - | chr7_1:33565148-33565167 | Msa1016600:intron | 75.0% |
| !! | GTGGTGGTGGGGGGCTGGCT+GGG | - | chr7_1:33565153-33565172 | Msa1016600:intron | 75.0% |
| !! | TGGTGGTGGGGGGCTGGCTG+GGG | - | chr7_1:33565154-33565173 | Msa1016600:intron | 75.0% |
| TGGTGGGAAGACGGCGGCGG+TGG | - | chr7_1:33565208-33565227 | Msa1016600:intron | 75.0% | |
| TGGGAAGACGGCGGCGGTGG+TGG | - | chr7_1:33565211-33565230 | Msa1016600:intron | 75.0% | |
| GGGAAGACGGCGGCGGTGGT+GGG | - | chr7_1:33565212-33565231 | Msa1016600:intron | 75.0% | |
| !! | AAGACGGCGGCGGTGGTGGG+TGG | - | chr7_1:33565215-33565234 | Msa1016600:intron | 75.0% |
| AACCAGTGCCCCCGGGGCAC+TGG | - | chr7_1:33567152-33567171 | Msa1016600:intron | 75.0% | |
| ! | AACCAGTGCCCCGGGGGCAC+TGG | + | chr7_1:33567157-33567176 | None:intergenic | 75.0% |
| TAACCGGTGCCCCGGGGCAC+TGG | + | chr7_1:33567287-33567306 | None:intergenic | 75.0% | |
| !!! | GGTGGTGGTGGGGGGCTGGC+TGG | - | chr7_1:33565152-33565171 | Msa1016600:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 33564804 | 33569070 | 33564804 | ID=Msa1016600;Name=Msa1016600 |
| chr7_1 | mRNA | 33564804 | 33569070 | 33564804 | ID=Msa1016600-mRNA-1;Parent=Msa1016600;Name=Msa1016600-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|317 |
| chr7_1 | exon | 33568478 | 33569070 | 33568478 | ID=Msa1016600-mRNA-1:exon:6512;Parent=Msa1016600-mRNA-1 |
| chr7_1 | exon | 33565925 | 33566043 | 33565925 | ID=Msa1016600-mRNA-1:exon:6511;Parent=Msa1016600-mRNA-1 |
| chr7_1 | exon | 33564804 | 33565045 | 33564804 | ID=Msa1016600-mRNA-1:exon:6510;Parent=Msa1016600-mRNA-1 |
| chr7_1 | CDS | 33568478 | 33569070 | 33568478 | ID=Msa1016600-mRNA-1:cds;Parent=Msa1016600-mRNA-1 |
| chr7_1 | CDS | 33565925 | 33566043 | 33565925 | ID=Msa1016600-mRNA-1:cds;Parent=Msa1016600-mRNA-1 |
| chr7_1 | CDS | 33564804 | 33565045 | 33564804 | ID=Msa1016600-mRNA-1:cds;Parent=Msa1016600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
