AlfalfaGEDB | Msa0944760

M. sativa cultivar zhongmu-4 / Msa0944760

KEGG: K15397
GO: GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
PFAM: PF08392.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0944760	XP_013451580.2	96.660	479	16	0	1	479	1	479	0.0	969

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0944760	sp\|Q5XEP9\|KCS2_ARATH	56.108	483	197	6	2	471	36	516	0.0	560

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015710	Msa0944760	0.809746	1.625156e-50	-8.615850e-47
Msa0017510	Msa0944760	0.812077	5.081835e-51	-8.615850e-47
Msa0019600	Msa0944760	0.846371	2.264903e-59	-8.615850e-47
Msa0050040	Msa0944760	0.810960	8.890101e-51	-8.615850e-47
Msa0055450	Msa0944760	0.805112	1.562068e-49	-8.615850e-47
Msa0102990	Msa0944760	0.810659	1.032775e-50	-8.615850e-47
Msa0110970	Msa0944760	0.800270	1.558976e-48	-8.615850e-47
Msa0111750	Msa0944760	0.801638	8.192098e-49	-8.615850e-47
Msa0124130	Msa0944760	0.827194	1.789884e-54	-8.615850e-47
Msa0141120	Msa0944760	0.843539	1.316663e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0944760	MtrunA17_Chr1g0188051	58.650	474	192	2	2	471	34	507	0.0	578
Msa0944760	MtrunA17_Chr1g0166191	58.491	477	188	4	2	471	40	513	0.0	571
Msa0944760	MtrunA17_Chr4g0063011	55.672	476	203	4	2	471	22	495	0.0	545
Msa0944760	MtrunA17_Chr6g0461631	96.958	263	8	0	217	479	3	265	0.0	541
Msa0944760	MtrunA17_Chr6g0480561	56.206	427	185	2	43	468	41	466	1.84e-175	501
Msa0944760	MtrunA17_Chr7g0276251	56.595	417	178	2	60	473	115	531	2.09e-171	493
Msa0944760	MtrunA17_Chr2g0306781	63.562	365	133	0	107	471	36	400	4.09e-171	487
Msa0944760	MtrunA17_Chr4g0035081	51.266	474	224	4	2	470	31	502	2.18e-170	489
Msa0944760	MtrunA17_Chr1g0209881	50.816	429	209	2	43	471	65	491	6.29e-159	459
Msa0944760	MtrunA17_Chr5g0423521	46.809	470	245	4	6	471	23	491	2.26e-154	448

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0944760	AT1G04220.1	56.108	483	197	6	2	471	36	516	0.0	560
Msa0944760	AT2G26640.1	56.303	476	200	4	2	471	31	504	0.0	550
Msa0944760	AT5G43760.1	60.369	434	162	4	48	471	88	521	0.0	541
Msa0944760	AT2G16280.1	51.471	476	220	4	2	470	39	510	2.11e-174	500
Msa0944760	AT1G19440.1	51.261	476	221	4	2	470	43	514	5.00e-174	499
Msa0944760	AT4G34510.1	50.844	474	226	5	2	472	18	487	3.20e-172	493
Msa0944760	AT1G01120.1	53.162	427	190	2	52	468	98	524	1.31e-171	493
Msa0944760	AT2G46720.1	50.227	440	213	3	32	468	27	463	8.64e-165	474
Msa0944760	AT1G25450.1	48.529	476	236	4	2	471	15	487	2.23e-158	458
Msa0944760	AT3G10280.1	49.091	440	211	4	32	468	27	456	2.50e-157	454

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Find 72 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGGCAAATGGCTTT+TGG	0.246325	6_3:+21801795	Msa0944760:CDS
AAAGTTGAAGCTAAAGATAT+TGG	0.336152	6_3:+21799040	Msa0944760:CDS
AAATACCTCAAGAAGACGTT+TGG	0.460466	6_3:-21799209	None:intergenic
AACTTAAAATTCGGCATGTA+TGG	0.357301	6_3:-21801579	None:intergenic
AATATCTTTAGCTTCAACTT+TGG	0.416100	6_3:-21799038	None:intergenic
AATTAGTAAGGATCATTGAA+GGG	0.585870	6_3:-21801242	None:intergenic
AATTGTCTCTTTCGAATGGG+TGG	0.541404	6_3:+21801261	Msa0944760:CDS
ACAATAGTATCTGAAAGTGA+TGG	0.605880	6_3:-21799100	None:intergenic
ACACATCATCAAGTTCTGTT+TGG	0.465892	6_3:+21801724	Msa0944760:CDS
ACTAATTGTCTCTTTCGAAT+GGG	0.459375	6_3:+21801258	Msa0944760:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGAAATGCTTCAACATTGT+TGG	-	chr6_3:21798569-21798588	None:intergenic	30.0%
TTGCACAAAAGAAATGTTGT+TGG	+	chr6_3:21798817-21798836	Msa0944760:CDS	30.0%
GGAATTTCTAATAATGCTTC+AGG	-	chr6_3:21798938-21798957	None:intergenic	30.0%
ACAATAGTATCTGAAAGTGA+TGG	-	chr6_3:21799103-21799122	None:intergenic	30.0%
GATCTATAATCTTAGTGGTA+TGG	+	chr6_3:21799153-21799172	Msa0944760:CDS	30.0%
AAAATATTTGGGTCTCTCAA+TGG	-	chr6_3:21799484-21799503	None:intergenic	30.0%
AATAAAATATGCAAGATCCG+GGG	+	chr6_3:21800354-21800373	Msa0944760:intron	30.0%
GTGTGAATTTGTATCATTTG+CGG	-	chr6_3:21800522-21800541	None:intergenic	30.0%
CAAATCTCAAGCATATACAA+AGG	+	chr6_3:21801213-21801232	Msa0944760:CDS	30.0%
CAATTAGTAAGGATCATTGA+AGG	-	chr6_3:21801246-21801265	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	21798519	21802165	21798519	ID=Msa0944760;Name=Msa0944760
chr6_3	mRNA	21798519	21802165	21798519	ID=Msa0944760-mRNA-1;Parent=Msa0944760;Name=Msa0944760-mRNA-1;_AED=0.01;_eAED=0.01;_QI=53\|1\|1\|1\|1\|1\|2\|209\|479
chr6_3	exon	21798519	21799225	21798519	ID=Msa0944760-mRNA-1:exon:6496;Parent=Msa0944760-mRNA-1
chr6_3	exon	21801171	21802165	21801171	ID=Msa0944760-mRNA-1:exon:6497;Parent=Msa0944760-mRNA-1
chr6_3	five_prime_UTR	21798519	21798571	21798519	ID=Msa0944760-mRNA-1:five_prime_utr;Parent=Msa0944760-mRNA-1
chr6_3	CDS	21798572	21799225	21798572	ID=Msa0944760-mRNA-1:cds;Parent=Msa0944760-mRNA-1
chr6_3	CDS	21801171	21801956	21801171	ID=Msa0944760-mRNA-1:cds;Parent=Msa0944760-mRNA-1
chr6_3	three_prime_UTR	21801957	21802165	21801957	ID=Msa0944760-mRNA-1:three_prime_utr;Parent=Msa0944760-mRNA-1

Gene Sequence

>Msa0944760

ATGTTGAAGCATTTCTATATGATATCAAACATAATGAACATTTTGTTCATGTCACTTTTAATAGTAGTAGCTACATCATGTGTAGGTTGTTTTTATGTCAATGATGAATATTGCAATCCTCAACCATCAATATTGATAAAATCATTTTGTTTAGCTACTTCCTTAGTTTACTACATTTTCATGACTAGACCAAACAAAATATACCTAGTAGATTTTGCATGTCACAAACCAAAAAACAATTGTATTTGCACAAAAGAAATGTTGTTGGATAGAGCAAAACATTTTGGTTTTCTTAATGAAGAAAGTTTCATTTTGATTCATAAGATTTTAGAAAGGTCAGGTGTGGGACCCATCACTTATGTTCCTGAAGCATTATTAGAAATTCCACCAAGACTAACACTTGATGAAGCAAGGAATGAATCAAATTTAGTTCTTTTTGGAGCTGTTGATGAACTTCTTGAGAAAACCAAAGTTGAAGCTAAAGATATTGGAATTCTTGTGGTGAACTGTTGTTTATTTAATCCTACACCATCACTTTCAGATACTATTGTTAATCATTATAAACTTAGAGGGAATATTTTGATCTATAATCTTAGTGGTATGGGATGCAGTGCTGGTGTTATTGCAGTGGACTTTGCCAAACGTCTTCTTGAGGCACACCCAAACTCATATGCTTTAGTGCTAAGTACAGAAAATCAAATCTCAAGCATATACAAAGGCAATAACCCTTCAATGATCCTTACTAATTGTCTCTTTCGAATGGGTGGATCGGCAGCCCTACTCTCAAGTCATCCATCGGACCGTAGCCGCTCAAAATATCAGTTGATGCATTCGTTGCGCACTCACGTAGGCGCTGATGACAACAGTTACAATTGCGTCTTTCAAGAAGAAGACGAAAAAGAAATACTCGGTGTTAAACTATCGAAGGATCTCATGAATGTTGCTAGGGATGCACTTCGTACACACATAACATCGCTCGGTCCATTAGTCCTCCCAATTTCGGAAAAACTCAAGTATGTGAAAAATTTAGTTGAGAGGAAGATTTTGAAGAAGAAGATCGAACCATACATGCCGAATTTTAAGTTAGCGTTCGATCAATTTTGCATGCATACGGGCGGTAGAGCGGTTCTTGATCGGATGCAAAAGAGTCTTGAGCTTGATGATTTTCATATGGAGCCTTCAAGAATGACACTATATAGATATGGTAACACATCATCAAGTTCTGTTTGGTATGAATTGTCTTATTGTGAAGCTAAGGGGAGAGTTAAAAAGGGACATAAAATATGGCAAATGGCTTTTGGATCTGGATTTAAGGTTAATACTGCTGTTTGGTATGCTTTGAAGAATGTTGATCCTAAATCATTGAAAAATGCTTGGATGGATGAGATTGATGATTTCCCTGTTCCATTGCCAATGAACAAACATATGATTAAAGCTTAG

Protein sequence

>Msa0944760

MLKHFYMISNIMNILFMSLLIVVATSCVGCFYVNDEYCNPQPSILIKSFCLATSLVYYIFMTRPNKIYLVDFACHKPKNNCICTKEMLLDRAKHFGFLNEESFILIHKILERSGVGPITYVPEALLEIPPRLTLDEARNESNLVLFGAVDELLEKTKVEAKDIGILVVNCCLFNPTPSLSDTIVNHYKLRGNILIYNLSGMGCSAGVIAVDFAKRLLEAHPNSYALVLSTENQISSIYKGNNPSMILTNCLFRMGGSAALLSSHPSDRSRSKYQLMHSLRTHVGADDNSYNCVFQEEDEKEILGVKLSKDLMNVARDALRTHITSLGPLVLPISEKLKYVKNLVERKILKKKIEPYMPNFKLAFDQFCMHTGGRAVLDRMQKSLELDDFHMEPSRMTLYRYGNTSSSSVWYELSYCEAKGRVKKGHKIWQMAFGSGFKVNTAVWYALKNVDPKSLKNAWMDEIDDFPVPLPMNKHMIKA*